Mercurial > repos > dereeper > beagle
changeset 0:a929ef8dea25 draft default tip
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
| author | dereeper |
|---|---|
| date | Tue, 14 Aug 2018 07:59:19 -0400 |
| parents | |
| children | |
| files | execute_beagle.sh execute_beagle.xml test-data/Annotated_VCF.vcf test-data/filelog.txt test-data/output.vcf |
| diffstat | 5 files changed, 6407 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/execute_beagle.sh Tue Aug 14 07:59:19 2018 -0400 @@ -0,0 +1,18 @@ +#!/bin/bash + + +vcf_input=$1 +phase=$2 +impute=$3 +out_prefix="out" + +mkdir tmpdir$$ + +cp -rf $vcf_input tmpdir$$/input.vcf + +beagle gt=$vcf_input phase-its=$phase impute-its=$impute out=$out_prefix + +gunzip $out_prefix.vcf.gz + +rm -rf tmpdir$$ +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/execute_beagle.xml Tue Aug 14 07:59:19 2018 -0400 @@ -0,0 +1,78 @@ +<tool id="Beagle" name="Beagle" version="1.0.0" > + <description>Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection</description> + <requirements> + <requirement type="package" version="4.0">Beagle</requirement> + </requirements> + <command interpreter="bash">$__tool_directory__/execute_beagle.sh $vcf_input $phase $impute</command> + <inputs> + <param format="vcf" name="vcf_input" type="data" label="Variant call format"/> + <param type="text" name="phase" value="5" help="Non-negative integer" label="specifies the number of iterations for estimating genotype phase (default: phase-its=5).Increasing this parameter will typicall increase genotype phaseaccuracy."/> + <param type="text" name="impute" value="5" help="Non-negative integer" label="specifies the number of iterations for estimating genotypes at ungenotyped markers (default:impute-its=5). Increasing this parameter (up to ~10 iterations) will typically increase genotype imputation accuracy."/> + </inputs> + <outputs> + <data format="vcf" name="vcf_ouput" label="Phased and imputed VCF" from_work_dir="out.vcf"/> + <data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/> + </outputs> + + <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> + <tests> + <!-- [HELP] Test files have to be in the ~/test-data directory --> + <test> + <param name="vcf_input" value="Annotated_VCF.vcf" /> + <param name="phase" value="5" /> + <param name="impute" value="5" /> + <output name="vcf_ouput" file="output.vcf" compare="sim_size"/> + <output name="log" file="filelog.txt" compare="sim_size"/> + </test> + </tests> + <help><![CDATA[ + + + +.. class:: infomark + +**Beagle** version 4 + | **If you use Beagle in a published analysis, please report the program version and cite the following article** "S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-97." + +.. class:: infomark + +**Galaxy integration** Provided by Southgreen & Marcon Valentin (IFB & INRA) + +.. class:: infomark + +**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr + +--------------------------------------------------- + +====== +Beagle +====== + +----------- +Description +----------- + + | Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. + +Version 4 has multiple improvements: + + a standard format (Variant Call Format) for input and output files + a powerful identity by descent detection algorithm: Refined IBD + support for multi-threaded computation + support for multi-allelic markers + improved methods for phasing and genotype imputation + elimination of temporary files + use of a sliding window permit control memory use + + | For further informations, please visite the Beagle website_. + + +.. _website: https://faculty.washington.edu/browning/beagle/b4_0.html + + + ]]></help> + <citations> + <citation type="doi">10.1086/521987</citation> + </citations> + +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Annotated_VCF.vcf Tue Aug 14 07:59:19 2018 -0400 @@ -0,0 +1,3106 @@ +##fileformat=VCFv4.2 +##fileDate=20180115 +##source=PLINKv1.90 +##contig=<ID=3,length=19999036> +##INFO=<ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##SnpEffVersion="4.0e (build 2014-09-13), by Pablo Cingolani" +##SnpEffCmd="SnpEff -o vcf -no-downstream -no-upstream myspecies -s /work/GALAXY/galaxy/database/files/071/dataset_71178.dat /work/GALAXY/galaxy/database/files/071/dataset_71176.dat " +##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact | Functional_Class | Codon_Change | Amino_Acid_Change| Amino_Acid_length | Gene_Name | Transcript_BioType | Gene_Coding | Transcript_ID | Exon_Rank | Genotype_Number [ | ERRORS | WARNINGS ] )' "> +##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' "> +##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' "> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT c88dcbba.0 0b7d031b.0 16ef3c90.0 26863647.0 7f32098d.0 608b0d34.0 46aa9c6a.0 d00c1e13.0 8366125c.0 a358fb3f.0 2a5ee06d.0 df3c89f8.0 78f9e9fe.0 04aca4b5.0 04704bb4.0 5cf82125.0 559cd294.0 98ca16ae.0 1865f890.0 66391666.0 824bd841.0 971d8d35.0 1580b445.0 3476f3f1.0 6fe1d5f1.0 727d7321.0 8a1459b3.0 1a210383.0 2aa697f5.0 a7596568.0 41872470.0 d9a92db4.0 66b6164a.0 5a43ae22.0 6ac8c69b.0 3afe78bc.0 bf19b73d.0 d7e9eece.0 82e8b7f7.0 60121701.0 6cf8dce4.0 3051c486.0 59afa5e3.0 68b91064.0 ae03e236.0 ddaead61.0 aa6cd0c1.0 e1d9a122.0 fb625f89.0 cb0723a4.0 98042619.0 aca14ce9.0 bada3969.0 5efeb5b6.0 fe614ecb.0 bea7cbcf.0 1abb6b2c.0 4506b36e.0 addc58a4.0 f5f3d6ea.0 e1838272.0 d2dd5d08.0 4874cc49.0 a6e508e5.0 61544ce0.0 429e439a.0 522427a2.0 b41ea6b3.0 773db8bf.0 ce7eb496.0 2eafa96f.0 533385bb.0 1f8b989f.0 44fe4cf1.0 07990ed9.0 f40ea464.0 c7913661.0 c54cc672.0 66c5c186.0 c111198a.0 5b45a727.0 de954805.0 2552833e.0 c840a160.0 529e807c.0 1fb8be6d.0 a85f295d.0 cb0c4d54.0 c3b20632.0 3f0e6324.0 178d96de.0 225b17eb.0 99d33763.0 d10e2929.0 8f99b9e2.0 f6801eb5.0 e2606999.0 b308ee1b.0 a7e6bc0f.0 84e1a141.0 bcea78dd.0 e1d1c3b0.0 01a58510.0 9c00ac3a.0 71ad2583.0 ea2ae002.0 bc730b70.0 9c62b49e.0 5da42fd9.0 3b7bddf8.0 45388f1b.0 cd33864f.0 28dd8a58.0 1de0e087.0 07fd6392.0 f8c60a5c.0 25cdd8ae.0 23b0b44c.0 484b2a0f.0 82e17a03.0 be2b0b83.0 260c1d61.0 e30161a0.0 115e701d.0 4c13a3a3.0 08beaab3.0 68f6c96b.0 2d661c20.0 fb2aa5d5.0 2ece01ea.0 e048f5ff.0 ee58d650.0 5872a595.0 5975119a.0 e3fc5497.0 a51b2a39.0 d66638c8.0 a5ef5ab7.0 7d71b69f.0 b4b4df33.0 14d89242.0 9bdaf6eb.0 c949dc7c.0 d4dd88ed.0 8fa373e8.0 eaa3a28a.0 8609fb0e.0 a6d8f1fd.0 be814f56.0 abc6960f.0 832b2be7.0 5776533f.0 3d3f5b4e.0 bc700e39.0 946e0202.0 47c2ea40.0 c86d6702.0 b95ce243.0 2e05f839.0 79ec00de.0 f292fe0a.0 a65ecc2d.0 2b962329.0 718e09f3.0 0a5fbba4.0 89d2c5a0.0 61d7b167.0 2bfcbe44.0 90bc17da.0 65329b91.0 e069425a.0 5325e87e.0 7578b606.0 6fb127b9.0 3b8476cc.0 c8fc9010.0 fd96414a.0 7f0e7041.0 a0c41ad0.0 1e5e8456.0 ab4a346a.0 77bec15a.0 2bca2f34.0 9651d67d.0 9a5569b2.0 b961cc90.0 e42dd51d.0 911f856a.0 53e1db9a.0 e5b216b3.0 18484bd4.0 64f24c90.0 9cbb223a.0 f7e1ce6e.0 9e44e293.0 eac19fb8.0 76f56677.0 87621330.0 dc2cf39b.0 17627a92.0 7126c359.0 c20dfc59.0 cbd6b346.0 f30e146b.0 1510e4aa.0 cf44b628.0 bd7aaa87.0 e8f708a5.0 2b4e06fe.0 3eb8fab5.0 aeed4684.0 328163e1.0 c7aeb39f.0 3e58f34c.0 cc0ef8cf.0 30646147.0 192e24ab.0 5ef1be74.0 71d5fcf4.0 714ac141.0 0f6a67da.0 a796716d.0 a8319fc6.0 93387d96.0 5384be83.0 8fafd383.0 cff871e8.0 2a7724c1.0 773e969e.0 743f41c1.0 1a946dc6.0 9ac72c9e.0 5505a767.0 8cd35626.0 fdd98970.0 86556239.0 44aeff79.0 c7d2513e.0 2a9d8d47.0 39dd7feb.0 c0936cf1.0 5aa7968d.0 73c4fdfb.0 5ae0bd70.0 122a975b.0 2b81cf74.0 9b2223bb.0 bf18cbae.0 16463092.0 7a723d9e.0 c8a73fe7.0 5b144b9c.0 3aa51818.0 4f643bf5.0 3fb62843.0 c0d6eca3.0 43f72773.0 +3 15001183 SNP-3.14999829. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu98Leu/c.294C>A|274|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||ctA/ctA|p.Leu76Leu/c.228C>A|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||ctA/ctA|p.Leu76Leu/c.228C>A|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.3|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15001469 SNP-3.15000115. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala142Gly/c.425A>G|274|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala120Gly/c.359A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala120Gly/c.359A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15002088 SNP-3.15000734. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||219|c.*219A>G|274|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||219|c.*219A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||219|c.*219A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 +3 15002962 SNP-3.15001608. C A . . PR;EFF=synonymous_variant(LOW||Tca/Tca|p.Ser189Ser/c.565G>T|309|LOC_Os03g26220|protein_coding|CODING|LOC_Os03g26220.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15006811 SNP-3.15005457. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||2|c.-2C>A|72|LOC_Os03g26229|protein_coding|CODING|LOC_Os03g26229.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15008914 SNP-3.15007560. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctT|p.Leu34Leu/c.102G>T|86|LOC_Os03g26240|protein_coding|CODING|LOC_Os03g26240.1|2|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 15009272 SNP-3.15007918. A G . . PR;EFF=intron_variant(MODIFIER|||c.28+154T>C|86|LOC_Os03g26240|protein_coding|CODING|LOC_Os03g26240.1|1|1) GT 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 +3 15009454 SNP-3.15008100. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15010303 SNP-3.15008949. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 +3 15012222 SNP-3.15010868. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 15013793 SNP-3.15012439. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15016928 SNP-3.15015574. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cAc|p.Arg29His/c.86C>A|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15016994 SNP-3.15015640. A G . . PR;EFF=synonymous_variant(LOW||aGg/aGg|p.Arg51Arg/c.152A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15017069 SNP-3.15015715. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tGt|p.Ser76Cys/c.227A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15017825 SNP-3.15016471. A G . . PR;EFF=intron_variant(MODIFIER|||c.233+750A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1) GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15021297 SNP-3.15019943. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCc/cGc|p.Pro159Arg/c.476A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15021415 SNP-3.15020061. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|atA/atG|p.Ile198Met/c.594A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 +3 15021478 SNP-3.15020124. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val219Val/c.657A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 15021637 SNP-3.15020283. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala272Ala/c.816A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15022555 SNP-3.15021201. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro578Pro/c.1734A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 +3 15022888 SNP-3.15021534. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caG|p.His689Gln/c.2067A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 +3 15023579 SNP-3.15022225. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15025795 SNP-3.15024441. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15029041 SNP-3.15027687. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 +3 15029887 SNP-3.15028533. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTt/cGt|p.Leu65Arg/c.194A>G|84|LOC_Os03g26280|protein_coding|CODING|LOC_Os03g26280.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 15030098 SNP-3.15028744. A G . . PR;EFF=intron_variant(MODIFIER|||c.207+198A>G|84|LOC_Os03g26280|protein_coding|CODING|LOC_Os03g26280.1|1|1) GT 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15031273 SNP-3.15029919. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15032589 SNP-3.15031235. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 +3 15032652 SNP-3.15031298. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 +3 15033259 SNP-3.15031905. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15041164 SNP-3.15039810. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 +3 15045891 SNP-3.15044537. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 +3 15048277 SNP-3.15046923. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val482Asp/c.1445C>A|1310|LOC_Os03g26329|protein_coding|CODING|LOC_Os03g26329.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 +3 15048568 SNP-3.15047214. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCc/cGc|p.Pro579Arg/c.1736A>G|1310|LOC_Os03g26329|protein_coding|CODING|LOC_Os03g26329.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 +3 15063744 SNP-3.15062390. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15063983 SNP-3.15062629. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 +3 15064067 SNP-3.15062713. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 +3 15064405 SNP-3.15063051. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly37Gly/c.109A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15065635 SNP-3.15064281. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgg/Ggg|p.Trp166Gly/c.496A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 15065828 SNP-3.15064474. A G . . PR;EFF=intron_variant(MODIFIER|||c.515+174A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|4|1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 15067575 SNP-3.15066221. A G . . PR;EFF=intron_variant(MODIFIER|||c.516-13A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 +3 15067632 SNP-3.15066278. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|tCa/tGa|p.Ser187*/c.560A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00);NMD=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 +3 15067704 SNP-3.15066350. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cGa|p.Pro211Arg/c.632A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 +3 15067776 SNP-3.15066422. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val235Gly/c.704A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 +3 15067863 SNP-3.15066509. C A . . PR;EFF=synonymous_variant(LOW||cAc/cAc|p.His264His/c.791C>A|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15067938 SNP-3.15066584. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro289Arg/c.866A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 +3 15067978 SNP-3.15066624. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|agT/agG|p.Ser302Arg/c.906A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. +3 15068177 SNP-3.15066823. A G . . PR;EFF=synonymous_variant(LOW||Gca/Gca|p.Ala369Ala/c.1105A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 +3 15068200 SNP-3.15066846. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taG|p.Tyr376*/c.1128A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00);NMD=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 +3 15068596 SNP-3.15067242. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys452Trp/c.1356A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15069419 SNP-3.15068065. A G . . PR;EFF=synonymous_variant(LOW||Gga/Gga|p.Gly696Gly/c.2086A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15069431 SNP-3.15068077. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Gct|p.Pro700Ala/c.2098A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 +3 15069683 SNP-3.15068329. A G . . PR;EFF=splice_donor_variant(HIGH|||c.2267A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1),intron_variant(MODIFIER|||c.2266+1A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1);LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15069856 SNP-3.15068502. A G . . PR;EFF=intron_variant(MODIFIER|||c.2266+174A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15069889 SNP-3.15068535. A G . . PR;EFF=intron_variant(MODIFIER|||c.2266+207A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 +3 15070071 SNP-3.15068717. A G . . PR;EFF=intron_variant(MODIFIER|||c.2267-189A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 15070205 SNP-3.15068851. A G . . PR;EFF=intron_variant(MODIFIER|||c.2267-55A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15070559 SNP-3.15069205. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 +3 15070657 SNP-3.15069303. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 +3 15071721 SNP-3.15070367. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Gtg|p.Leu124Val/c.370A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 +3 15071916 SNP-3.15070562. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aGa|p.Thr163Arg/c.488A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 +3 15072360 SNP-3.15071006. A G . . PR;EFF=intron_variant(MODIFIER|||c.817+115A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 +3 15072470 SNP-3.15071116. A G . . PR;EFF=intron_variant(MODIFIER|||c.817+225A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. +3 15072855 SNP-3.15071501. A G . . PR;EFF=intron_variant(MODIFIER|||c.817+610A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 15073143 SNP-3.15071789. A G . . PR;EFF=intron_variant(MODIFIER|||c.818-652A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15073653 SNP-3.15072299. A G . . PR;EFF=intron_variant(MODIFIER|||c.818-142A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 +3 15073924 SNP-3.15072570. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|tCa/tGa|p.Ser316*/c.947A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26360|LOC_Os03g26360|1|1.00);NMD=(LOC_Os03g26360|LOC_Os03g26360|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15074046 SNP-3.15072692. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgt/Ggt|p.Arg340Gly/c.1018A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 +3 15075268 SNP-3.15073914. A G . . PR;EFF=synonymous_variant(LOW||Gaa/Gaa|p.Glu510Glu/c.1528A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15076823 SNP-3.15075469. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 +3 15092922 SNP-3.15091568. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15093289 SNP-3.15091935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15094063 SNP-3.15092709. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 +3 15095753 SNP-3.15094399. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 +3 15097742 SNP-3.15096388. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg209Arg/c.626A>G|220|LOC_Os03g26420|protein_coding|CODING|LOC_Os03g26420.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/1 ./. 0/1 ./. ./. ./. ./. 1/1 ./. 0/1 ./. ./. 0/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 +3 15098539 SNP-3.15097185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 +3 15104295 SNP-3.15102941. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15105593 SNP-3.15104239. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15105921 SNP-3.15104567. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 +3 15106183 SNP-3.15104829. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. ./. 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 +3 15108121 SNP-3.15106767. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg92Arg/c.275A>G|411|LOC_Os03g26440|protein_coding|CODING|LOC_Os03g26440.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 +3 15108954 SNP-3.15107600. A G . . PR;EFF=intron_variant(MODIFIER|||c.468+106A>G|411|LOC_Os03g26440|protein_coding|CODING|LOC_Os03g26440.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15112916 SNP-3.15111562. C A . . PR;EFF=intron_variant(MODIFIER|||c.1157-616C>A|411|LOC_Os03g26440|protein_coding|CODING|LOC_Os03g26440.1|14|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 15116227 SNP-3.15114873. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcA|p.Ser85Ser/c.255C>A|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|3|1) GT 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15117473 SNP-3.15116119. A G . . PR;EFF=intron_variant(MODIFIER|||c.580-207A>G|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 15118197 SNP-3.15116843ga. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||219|c.*219C>A|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 +3 15118218 SNP-3.15116864. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||240|c.*240C>A|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|8|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15120220 SNP-3.15118866. A G . . PR;EFF=intron_variant(MODIFIER|||c.614-34T>C|260|LOC_Os03g26460|protein_coding|CODING|LOC_Os03g26460.1|3|1),intron_variant(MODIFIER|||c.614-34T>C|247|LOC_Os03g26460|protein_coding|CODING|LOC_Os03g26460.2|3|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15122456 SNP-3.15121102. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15123271 SNP-3.15121917. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 15123515 SNP-3.15122161. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15124843 SNP-3.15123489. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acG|p.Thr141Thr/c.423A>G|429|LOC_Os03g26480|protein_coding|CODING|LOC_Os03g26480.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/0 +3 15126492 SNP-3.15125138. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cca/Gca|p.Pro242Ala/c.724A>G|429|LOC_Os03g26480|protein_coding|CODING|LOC_Os03g26480.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 +3 15131782 SNP-3.15130428. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAc/gTc|p.Asp119Val/c.356G>T|249|LOC_Os03g26500|protein_coding|CODING|LOC_Os03g26500.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 +3 15134720 SNP-3.15133366. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15134837 SNP-3.15133483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15135234 SNP-3.15133880. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15135562 SNP-3.15134208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15135826 SNP-3.15134472. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15137113 SNP-3.15135759. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15138175 SNP-3.15136821. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 +3 15140186 SNP-3.15138832. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 +3 15141993 SNP-3.15140639. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15142981 SNP-3.15141627. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15145671 SNP-3.15144317. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15146229 SNP-3.15144875. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15146763 SNP-3.15145409. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.491G>T|201|LOC_Os03g26520|protein_coding|CODING|LOC_Os03g26520.1|2|1),intron_variant(MODIFIER|||c.491-2G>T|201|LOC_Os03g26520|protein_coding|CODING|LOC_Os03g26520.1|1|1);LOF=(LOC_Os03g26520|LOC_Os03g26520|1|1.00) GT 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15146784 SNP-3.15145430. A G . . PR;EFF=intron_variant(MODIFIER|||c.491-23T>C|201|LOC_Os03g26520|protein_coding|CODING|LOC_Os03g26520.1|1|1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15147681 SNP-3.15146327. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 +3 15151367 SNP-3.15150013. C A . . PR;EFF=synonymous_variant(LOW||tAt/tAt|p.Tyr454Tyr/c.1361C>A|467|LOC_Os03g26530|protein_coding|CODING|LOC_Os03g26530.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15151714 SNP-3.15150360. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||304|c.*304A>G|467|LOC_Os03g26530|protein_coding|CODING|LOC_Os03g26530.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. +3 15154622 SNP-3.15153268. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15155173 SNP-3.15153819. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 +3 15155827 SNP-3.15154473. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 +3 15155951 SNP-3.15154597. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15158042 SNP-3.15156688. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 +3 15163259 SNP-3.15161905. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 15163904 SNP-3.15162550. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15164146 SNP-3.15162792. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 +3 15164772 SNP-3.15163418. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15165486 SNP-3.15164132. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTg/gGg|p.Val9Gly/c.26A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15165606 SNP-3.15164252. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met49Arg/c.146A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 15165621 SNP-3.15164267. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp54Gly/c.161A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 15165706 SNP-3.15164352. A G . . PR;EFF=intron_variant(MODIFIER|||c.170-19A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 +3 15177294 SNP-3.15175940. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 1/1 +3 15177335 SNP-3.15175981. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 15178305 SNP-3.15176951. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 +3 15178849 SNP-3.15177495. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15178882 SNP-3.15177528. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTt/cAt|p.Leu4His/c.11C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15180161 SNP-3.15178807. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Atc|p.Phe279Ile/c.835C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15180305 SNP-3.15178951. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln327Glu/c.979A>G|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15180782 SNP-3.15179428. C A . . PR;EFF=synonymous_variant(LOW||Agc/Agc|p.Ser486Ser/c.1456C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15181560 SNP-3.15180206. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aGt|p.Thr691Ser/c.2072A>G|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15181674 SNP-3.15180320. C A . . PR;EFF=synonymous_variant(LOW||gAc/gAc|p.Asp729Asp/c.2186C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 +3 15182020 SNP-3.15180666. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaA|p.Asn809Lys/c.2427C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.2427C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. +3 15182293 SNP-3.15180939. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taA|p.Tyr900*/c.2700C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26570|LOC_Os03g26570|1|1.00);NMD=(LOC_Os03g26570|LOC_Os03g26570|1|1.00) GT ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15183245 SNP-3.15181891. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15183327 SNP-3.15181973. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 +3 15183542 SNP-3.15182188. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. ./. ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15185690 SNP-3.15184336. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 15185780 SNP-3.15184426. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 +3 15186485 SNP-3.15185131. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15186576 SNP-3.15185222. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 15187562 SNP-3.15186208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. +3 15187944 SNP-3.15186590. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15188301 SNP-3.15186947. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/1 1/1 +3 15189650 SNP-3.15188296. A G . . PR;EFF=intron_variant(MODIFIER|||c.-164-104A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|1|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 +3 15189903 SNP-3.15188549. A G . . PR;EFF=intron_variant(MODIFIER|||c.-94+79A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 +3 15190247 SNP-3.15188893. C A . . PR;EFF=intron_variant(MODIFIER|||c.-94+423C>A|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|2|1) GT 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 15194289 SNP-3.15192935. A G . . PR;EFF=intron_variant(MODIFIER|||c.-93-62A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15194367 SNP-3.15193013. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||77|c.-77A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 +3 15199663 SNP-3.15198309. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/1 ./. ./. 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15199752 SNP-3.15198398. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15199829 SNP-3.15198475. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15201959 SNP-3.15200605. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15202420 SNP-3.15201066. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 +3 15206365 SNP-3.15205011. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aGg|p.Lys329Arg/c.986A>G|497|LOC_Os03g26610|protein_coding|CODING|LOC_Os03g26610.1|5|1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 +3 15208339 SNP-3.15206985. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 +3 15208375 SNP-3.15207021. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 15208508 SNP-3.15207154. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 +3 15210667 SNP-3.15209313. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||356|c.*356C>A|472|LOC_Os03g26620|protein_coding|CODING|LOC_Os03g26620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15210787 SNP-3.15209433. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15212642 SNP-3.15211288. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. ./. 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. ./. ./. 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15212918 SNP-3.15211564. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15214904 SNP-3.15213550. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Cct|p.Ala637Pro/c.1909T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Gct/Cct|p.Ala637Pro/c.1909T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 +3 15215501 SNP-3.15214147. A G . . PR;EFF=intron_variant(MODIFIER|||c.1683+94T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|5|1),intron_variant(MODIFIER|||c.1683+94T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|5|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15215914 SNP-3.15214560. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAt/aTt|p.Asn485Ile/c.1454G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aAt/aTt|p.Asn485Ile/c.1454G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15216651 SNP-3.15215297. C A . . PR;EFF=intron_variant(MODIFIER|||c.1333+184G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|3|1),intron_variant(MODIFIER|||c.1333+184G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15219769 SNP-3.15218415. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15222669 SNP-3.15221315. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15222691 SNP-3.15221337. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/1 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15223329 SNP-3.15221975. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15224013 SNP-3.15222659. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15224158 SNP-3.15222804. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||505|c.-505A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15224552 SNP-3.15223198. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||111|c.-111C>A|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.-54-57C>A|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15224739 SNP-3.15223385. A G . . PR;EFF=synonymous_variant(LOW||aGg/aGg|p.Arg26Arg/c.77A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||aGg/aGg|p.Arg26Arg/c.77A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15225273 SNP-3.15223919. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctc/Gtc|p.Leu156Val/c.466A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Ctc/Gtc|p.Leu156Val/c.466A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 +3 15225820 SNP-3.15224466. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 +3 15226647 SNP-3.15225293. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. +3 15233433 SNP-3.15232079. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 +3 15233559 SNP-3.15232205. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 +3 15234063 SNP-3.15232709. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15235833 SNP-3.15234479. A G . . PR;EFF=synonymous_variant(LOW||Ctt/Ctt|p.Leu80Leu/c.238T>C|158|LOC_Os03g26680|protein_coding|CODING|LOC_Os03g26680.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15239794 SNP-3.15238440. A G . . PR;EFF=intron_variant(MODIFIER|||c.957-297A>G|817|LOC_Os03g26690|protein_coding|CODING|LOC_Os03g26690.1|2|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 +3 15241687 SNP-3.15240333. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys536Lys/c.1608C>A|817|LOC_Os03g26690|protein_coding|CODING|LOC_Os03g26690.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 15254129 SNP-3.15252775. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 +3 15254265 SNP-3.15252911. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15290587 SNP-3.15289233. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 +3 15290918 SNP-3.15289564. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15291376 SNP-3.15290022. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaG/aaC|p.Lys417Asn/c.1251T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15292524 SNP-3.15291170. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gCt|p.Asp118Ala/c.353T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 1/1 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 +3 15292560 SNP-3.15291206. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg106Pro/c.317T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 +3 15292626 SNP-3.15291272. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAa/cCa|p.Gln84Pro/c.251T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15293334 SNP-3.15291980. A G . . PR;EFF=intron_variant(MODIFIER|||c.143-600T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|1|1) GT 1/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 +3 15293985 SNP-3.15292631. A G . . PR;EFF=intron_variant(MODIFIER|||c.142+129T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 +3 15294598 SNP-3.15293244. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15294874 SNP-3.15293520. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 +3 15301525 SNP-3.15300171. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15304027 SNP-3.15302673. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys68Glu/c.202A>G|235|LOC_Os03g26810|protein_coding|CODING|LOC_Os03g26810.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. +3 15309510 SNP-3.15308156. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttt/Gtt|p.Phe176Val/c.526A>G|178|LOC_Os03g26820|protein_coding|CODING|LOC_Os03g26820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/1 0/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 +3 15309552 SNP-3.15308198. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||31|c.*31A>G|178|LOC_Os03g26820|protein_coding|CODING|LOC_Os03g26820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 +3 15315887 SNP-3.15314533. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15316277 SNP-3.15314923. C A . . PR;EFF=synonymous_variant(LOW||tTg/tTg|p.Leu86Leu/c.257G>T|187|LOC_Os03g26840|protein_coding|CODING|LOC_Os03g26840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15316494 SNP-3.15315140. A G . . PR;EFF=synonymous_variant(LOW||Ctg/Ctg|p.Leu14Leu/c.40T>C|187|LOC_Os03g26840|protein_coding|CODING|LOC_Os03g26840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15318459 SNP-3.15317105. A G . . PR;EFF=splice_acceptor_variant(HIGH|||c.151A>G|97|LOC_Os03g26850|protein_coding|CODING|LOC_Os03g26850.1|2|1),intron_variant(MODIFIER|||c.151-1A>G|97|LOC_Os03g26850|protein_coding|CODING|LOC_Os03g26850.1|1|1);LOF=(LOC_Os03g26850|LOC_Os03g26850|1|1.00) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15319991 SNP-3.15318637. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15320714 SNP-3.15319360. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15321314 SNP-3.15319960. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 +3 15321781 SNP-3.15320427. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15323105 SNP-3.15321751. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctA/ctT|p.Leu153Leu/c.459G>T|332|LOC_Os03g26860|protein_coding|CODING|LOC_Os03g26860.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 +3 15323126 SNP-3.15321772. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caA/caT|p.Gln146His/c.438G>T|332|LOC_Os03g26860|protein_coding|CODING|LOC_Os03g26860.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 15323380 SNP-3.15322026. A G . . PR;EFF=intron_variant(MODIFIER|||c.367-183T>C|332|LOC_Os03g26860|protein_coding|CODING|LOC_Os03g26860.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15326858 SNP-3.15325504. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 +3 15326925 SNP-3.15325571. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/1 0/0 0/1 ./. 0/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15327621 SNP-3.15326267. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 +3 15327657 SNP-3.15326303. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15327752 SNP-3.15326398. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15328210 SNP-3.15326856. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15329206 SNP-3.15327852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15329912 SNP-3.15328558. A G . . PR;EFF=intron_variant(MODIFIER|||c.-116-20A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|1|1),intron_variant(MODIFIER|||c.-1641-20A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|1|1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. +3 15331834 SNP-3.15330480. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||1077|c.-1077A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.252+197A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|4|1) GT ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. +3 15332489 SNP-3.15331135. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||422|c.-422C>A|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.253-452C>A|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|4|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15333239 SNP-3.15331885. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala154Ala/c.462A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala80Ala/c.240A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 +3 15333774 SNP-3.15332420. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu240Leu/c.720A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||ctG/ctG|p.Leu166Leu/c.498A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15333798 SNP-3.15332444. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcA|p.Ser248Ser/c.744C>A|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|9|1),synonymous_variant(LOW|SILENT|tcC/tcA|p.Ser174Ser/c.522C>A|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|8|1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15333950 SNP-3.15332596. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys265Glu/c.793A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|10|1),missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys191Glu/c.571A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|9|1) GT ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 +3 15335806 SNP-3.15334452. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 +3 15335891 SNP-3.15334537. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 15336159 SNP-3.15334805. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 +3 15336618 SNP-3.15335264. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15336996 SNP-3.15335642. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 +3 15337287 SNP-3.15335933. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15340437 SNP-3.15339083. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/1 0/0 0/0 0/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15341253 SNP-3.15339899. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 15341900 SNP-3.15340546. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 +3 15343206 SNP-3.15341852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 15346607 SNP-3.15345253. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15347942 SNP-3.15346588. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 15348159 SNP-3.15346805. A G . . PR;EFF=intron_variant(MODIFIER|||c.52-40A>G|800|LOC_Os03g26880|protein_coding|CODING|LOC_Os03g26880.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15349886 SNP-3.15348532. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caA|p.His445Gln/c.1335C>A|800|LOC_Os03g26880|protein_coding|CODING|LOC_Os03g26880.1|4|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 +3 15351072 SNP-3.15349718. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcA|p.Ser757Ser/c.2271C>A|800|LOC_Os03g26880|protein_coding|CODING|LOC_Os03g26880.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 15352213 SNP-3.15350859. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttG/ttC|p.Leu1190Phe/c.3570T>C|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 15353046 SNP-3.15351692. C A . . PR;EFF=intron_variant(MODIFIER|||c.2885-52G>T|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|5|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 +3 15355248 SNP-3.15353894. A G . . PR;EFF=synonymous_variant(LOW||aCt/aCt|p.Thr508Thr/c.1523T>C|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15355846 SNP-3.15354492. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Agg/Cgg|p.Arg340Arg/c.1018T>C|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 15357818 SNP-3.15356464. C A . . PR;EFF=intron_variant(MODIFIER|||c.458-173G>T|321|LOC_Os03g26900|protein_coding|CODING|LOC_Os03g26900.1|2|1) GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 15358532 SNP-3.15357178. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caG/caC|p.Gln22His/c.66T>C|321|LOC_Os03g26900|protein_coding|CODING|LOC_Os03g26900.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 +3 15361028 SNP-3.15359674. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 +3 15361971 SNP-3.15360617. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15363498 SNP-3.15362144. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15366115 SNP-3.15364761. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 +3 15366187 SNP-3.15364833. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 +3 15367078 SNP-3.15365724. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. ./. ./. ./. ./. 0/1 0/1 ./. 0/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 1/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15368555 SNP-3.15367201. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15369388 SNP-3.15368034. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15369587 SNP-3.15368233. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15369786 SNP-3.15368432. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15370592 SNP-3.15369238. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 +3 15370686 SNP-3.15369332. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15370768 SNP-3.15369414. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15371351 SNP-3.15369997. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15372006 SNP-3.15370652. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15373779 SNP-3.15372425. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15377035 SNP-3.15375681. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/1 ./. 0/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 15378020 SNP-3.15376666. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 15379589 SNP-3.15378235. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15379816 SNP-3.15378462. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15379991 SNP-3.15378637. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 +3 15382697 SNP-3.15381343. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro148Pro/c.444C>A|374|LOC_Os03g26910|protein_coding|CODING|LOC_Os03g26910.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 +3 15384795 SNP-3.15383441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 +3 15386720 SNP-3.15385366. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 +3 15387032 SNP-3.15385678. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 +3 15388007 SNP-3.15386653. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 +3 15388697 SNP-3.15387343. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15389271 SNP-3.15387917. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15389524 SNP-3.15388170. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 +3 15389626 SNP-3.15388272. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15390114 SNP-3.15388760. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15393029 SNP-3.15391675. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15395475 SNP-3.15394121. A G . . PR;EFF=synonymous_variant(LOW||cGt/cGt|p.Arg50Arg/c.149A>G|503|LOC_Os03g26920|protein_coding|CODING|LOC_Os03g26920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15399098 SNP-3.15397744. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 ./. 0/1 ./. ./. 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/1 ./. ./. 0/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/1 ./. 0/1 1/1 1/1 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/1 1/1 ./. 0/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/0 ./. 0/1 ./. 0/1 0/0 +3 15401934 SNP-3.15400580. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCc/gGc|p.Ala290Gly/c.869A>G|478|LOC_Os03g26930|protein_coding|CODING|LOC_Os03g26930.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15402454 SNP-3.15401100. C A . . PR;EFF=intron_variant(MODIFIER|||c.1094+201C>A|478|LOC_Os03g26930|protein_coding|CODING|LOC_Os03g26930.1|5|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15402840 SNP-3.15401486. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ccA/ccG|p.Pro376Pro/c.1128A>G|478|LOC_Os03g26930|protein_coding|CODING|LOC_Os03g26930.1|6|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15407650 SNP-3.15406296. A G . . PR;EFF=intron_variant(MODIFIER|||c.248-77A>G|181|LOC_Os03g26940|protein_coding|CODING|LOC_Os03g26940.1|2|1) GT 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15407820 SNP-3.15406466. A G . . PR;EFF=intron_variant(MODIFIER|||c.298+43A>G|181|LOC_Os03g26940|protein_coding|CODING|LOC_Os03g26940.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15410098 SNP-3.15408744. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/1 0/1 0/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 +3 15417237 SNP-3.15415883. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp1054Gly/c.3161A>G|1581|LOC_Os03g26960|protein_coding|CODING|LOC_Os03g26960.1|13|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 +3 15420573 SNP-3.15419219. A G . . PR;EFF=intron_variant(MODIFIER|||c.118+84A>G|235|LOC_Os03g26970|protein_coding|CODING|LOC_Os03g26970.1|2|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 15423622 SNP-3.15422268. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaG|p.Asp181Glu/c.543A>G|235|LOC_Os03g26970|protein_coding|CODING|LOC_Os03g26970.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15426783 SNP-3.15425429. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 +3 15428351 SNP-3.15426997. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15429024 SNP-3.15427670. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15431066 SNP-3.15429712. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15432664 SNP-3.15431310. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15433832 SNP-3.15432478. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15434604 SNP-3.15433250. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15437886 SNP-3.15436532. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 +3 15442866 SNP-3.15441512. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15443878 SNP-3.15442524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 15445331 SNP-3.15443977. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 +3 15446453 SNP-3.15445099. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15447518 SNP-3.15446164. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 +3 15449713 SNP-3.15448359. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 +3 15451422 SNP-3.15450068. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15451733 SNP-3.15450379. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15452883 SNP-3.15451529. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 +3 15453230 SNP-3.15451876. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 +3 15454100 SNP-3.15452746. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile13Asn/c.38C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile13Asn/c.38C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15454253 SNP-3.15452899. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aAg|p.Met64Lys/c.191C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aTg/aAg|p.Met64Lys/c.191C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 +3 15455450 SNP-3.15454096. A G . . PR;EFF=intron_variant(MODIFIER|||c.*65-712A>G|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|2|1),intron_variant(MODIFIER|||c.*65-712A>G|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.2|1|1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 +3 15456672 SNP-3.15455318. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||2382|c.*575C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15457547 SNP-3.15456193. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3257|c.*1450A>G|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 +3 15457947 SNP-3.15456593. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 15458910 SNP-3.15457556. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15459967 SNP-3.15458613. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15462917 SNP-3.15461563. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||182|c.*182A>G|290|LOC_Os03g27010|protein_coding|CODING|LOC_Os03g27010.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15463539 SNP-3.15462185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15463651 SNP-3.15462297. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15473418 SNP-3.15472064. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys567Lys/c.1699C>A|572|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aaa/Aaa|p.Lys567Lys/c.1699C>A|572|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.2|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aaa/Aaa|p.Lys566Lys/c.1696C>A|571|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.3|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aaa/Aaa|p.Lys543Lys/c.1627C>A|548|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.5|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||748|c.*653C>A|505|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.6|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1472|c.*599C>A|364|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.7|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15476947 SNP-3.15475593. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Act/Tct|p.Thr35Ser/c.103G>T|184|LOC_Os03g27030|protein_coding|CODING|LOC_Os03g27030.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.303-137G>T|206|LOC_Os03g27030|protein_coding|CODING|LOC_Os03g27030.1|4|1),intron_variant(MODIFIER|||c.303-137G>T|205|LOC_Os03g27030|protein_coding|CODING|LOC_Os03g27030.2|4|1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15482936 SNP-3.15481582. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 +3 15482992 SNP-3.15481638. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15483577 SNP-3.15482223. A G . . PR;EFF=synonymous_variant(LOW||aGt/aGt|p.Ser56Ser/c.167A>G|130|LOC_Os03g27050|protein_coding|CODING|LOC_Os03g27050.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15485632 SNP-3.15484278. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15486523 SNP-3.15485169. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 15486613 SNP-3.15485259. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15487081 SNP-3.15485727. A G . . PR;EFF=synonymous_variant(LOW||atG/atG|p.Met12Met/c.36A>G|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 +3 15487224 SNP-3.15485870. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTg/gGg|p.Val60Gly/c.179A>G|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15487245 SNP-3.15485891. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cGt|p.His67Arg/c.200A>G|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1) GT ./. ./. 0/1 1/1 ./. 0/0 ./. ./. 0/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 +3 15487265 SNP-3.15485911. C A . . PR;EFF=splice_donor_variant(HIGH|||c.220C>A|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1),intron_variant(MODIFIER|||c.219+1C>A|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1);LOF=(LOC_Os03g27054|LOC_Os03g27054|1|1.00) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 15491015 SNP-3.15489661. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/1 ./. 0/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 +3 15493570 SNP-3.15492216. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aAa|p.Thr75Lys/c.224C>A|169|LOC_Os03g27070|protein_coding|CODING|LOC_Os03g27070.1|1|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15493738 SNP-3.15492384. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcG/gcA|p.Ala95Ala/c.285C>A|169|LOC_Os03g27070|protein_coding|CODING|LOC_Os03g27070.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15494636 SNP-3.15493282. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 15497892 SNP-3.15496538. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 ./. ./. 0/1 ./. ./. ./. 0/0 0/1 ./. 0/1 ./. 1/1 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 +3 15505717 SNP-3.15504363. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gaA/gaG|p.Glu276Glu/c.828A>G|545|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.1|3|1),synonymous_variant(LOW|SILENT|gaA/gaG|p.Glu276Glu/c.828A>G|509|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.2|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 15507530 SNP-3.15506176. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Gct|p.Ser542Ala/c.1624A>G|545|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||563|c.*563A>G|509|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 +3 15508267 SNP-3.15506913. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 15511291 SNP-3.15509937. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 15512315 SNP-3.15510961. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15514427 SNP-3.15513073. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 15516480 SNP-3.15515126. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/1 0/0 ./. ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 +3 15519829 SNP-3.15518475. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 15523120 SNP-3.15521766. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 +3 15523284 SNP-3.15521930. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 1/1 +3 15524641 SNP-3.15523287. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 +3 15529204 SNP-3.15527850. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu256Leu/c.768A>G|338|LOC_Os03g27110|protein_coding|CODING|LOC_Os03g27110.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 15529402 SNP-3.15528048. C A . . PR;EFF=intron_variant(MODIFIER|||c.860+18C>A|338|LOC_Os03g27110|protein_coding|CODING|LOC_Os03g27110.1|3|1) GT 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 +3 15530319 SNP-3.15528965. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 15530704 SNP-3.15529350. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||258|c.*258T>C|368|LOC_Os03g27120|protein_coding|CODING|LOC_Os03g27120.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. +3 15533512 SNP-3.15532158. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 15534597 SNP-3.15533243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 +3 15534832 SNP-3.15533478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 +3 15535412 SNP-3.15534058. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. +3 15550180 SNP-3.15548826. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 15550690 SNP-3.15549336. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 +3 15550878 SNP-3.15549524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 15551274 SNP-3.15549920. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 +3 15553792 SNP-3.15552438. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/1 1/1 0/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 15554798 SNP-3.15553444. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 +3 15558056 SNP-3.15556702. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 +3 15558608 SNP-3.15557254. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 +3 15560579 SNP-3.15559225. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cGg|p.Pro31Arg/c.92A>G|91|LOC_Os03g27160|protein_coding|CODING|LOC_Os03g27160.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 +3 15562827 SNP-3.15561473. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 +3 15566406 SNP-3.15565052. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 ./. ./. ./. 0/1 1/1 1/1 ./. ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. ./. 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 0/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 +3 15567183 SNP-3.15565829. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 +3 15568341 SNP-3.15566987. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aag/Tag|p.Lys291*/c.871G>T|302|LOC_Os03g27190|protein_coding|CODING|LOC_Os03g27190.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 +3 15574292 SNP-3.15572938. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 +3 15575719 SNP-3.15574365. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15576415 SNP-3.15575061. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 +3 15576739 SNP-3.15575385. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 15577351 SNP-3.15575997. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15577952 SNP-3.15576598. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15578355 SNP-3.15577001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 +3 15578684 SNP-3.15577330. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/1 ./. 1/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15579534 SNP-3.15578180. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 +3 15586161 SNP-3.15584807. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acC|p.Thr228Thr/c.684T>C|369|LOC_Os03g27210|protein_coding|CODING|LOC_Os03g27210.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 15587687 SNP-3.15586333. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 15588394 SNP-3.15587040. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 15589168 SNP-3.15587814. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. +3 15591769 SNP-3.15590415. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/1 1/1 ./. 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 +3 15592964 SNP-3.15591610. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 +3 15593033 SNP-3.15591679. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 +3 15593083 SNP-3.15591729. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 15593983 SNP-3.15592629. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 15596333 SNP-3.15594979. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 15597089 SNP-3.15595735. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 15599575 SNP-3.15598221. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 +3 15600047 SNP-3.15598693. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 15600414 SNP-3.15599060. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 15601856 SNP-3.15600502. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 15602755 SNP-3.15601401. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 15604306 SNP-3.15602952. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aGg|p.Lys122Arg/c.365A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 +3 15605931 SNP-3.15604577. A G . . PR;EFF=intron_variant(MODIFIER|||c.864-143A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|2|1) GT 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 +3 15606188 SNP-3.15604834. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys326Trp/c.978A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 1/1 +3 15606329 SNP-3.15604975. A G . . PR;EFF=synonymous_variant(LOW||gtG/gtG|p.Val373Val/c.1119A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 +3 15607445 SNP-3.15606091. A G . . PR;EFF=intron_variant(MODIFIER|||c.1387-690A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|4|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15610080 SNP-3.15608726. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15610619 SNP-3.15609265. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15613875 SNP-3.15612521. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15615734 SNP-3.15614380. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caA|p.His124Gln/c.372C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 15617233 SNP-3.15615879. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp372Glu/c.1116C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15618492 SNP-3.15617138. C A . . PR;EFF=synonymous_variant(LOW||cAa/cAa|p.Gln581Gln/c.1742C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15618508 SNP-3.15617154. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro586Pro/c.1758C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15625137 SNP-3.15623783. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15625252 SNP-3.15623898. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15626613 SNP-3.15625259. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaG/gaA|p.Glu24Glu/c.72C>A|220|LOC_Os03g27270|protein_coding|CODING|LOC_Os03g27270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15627582 SNP-3.15626228. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15630323 SNP-3.15628969. C A . . PR;EFF=intron_variant(MODIFIER|||c.196-350G>T|342|LOC_Os03g27280|protein_coding|CODING|LOC_Os03g27280.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15630482 SNP-3.15629128. C A . . PR;EFF=intron_variant(MODIFIER|||c.196-509G>T|342|LOC_Os03g27280|protein_coding|CODING|LOC_Os03g27280.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15632541 SNP-3.15631187. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15633595 SNP-3.15632241. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15634843 SNP-3.15633489. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 +3 15635264 SNP-3.15633910. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15638394 SNP-3.15637040. A G . . PR;EFF=intron_variant(MODIFIER|||c.36+397A>G|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 ./. +3 15638443 SNP-3.15637089. C A . . PR;EFF=intron_variant(MODIFIER|||c.36+446C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|1|1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15640372 SNP-3.15639018. C A . . PR;EFF=splice_region_variant(LOW|||c.39C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gaA/gaA|p.Glu13Glu/c.39C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15641375 SNP-3.15640021. C A . . PR;EFF=intron_variant(MODIFIER|||c.456+395C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15642911 SNP-3.15641557. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15644246 SNP-3.15642892. C A . . PR;EFF=synonymous_variant(LOW||caT/caT|p.His56His/c.168G>T|65|LOC_Os03g27300|protein_coding|CODING|LOC_Os03g27300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/1 0/0 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 +3 15645382 SNP-3.15644028. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15648914 SNP-3.15647560. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||59|c.-59C>A|334|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||59|c.-59C>A|314|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||59|c.-59C>A|309|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||59|c.-59C>A|230|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.4|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1178|c.-507C>A|224|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.5|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15650573 SNP-3.15649219. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|334|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|314|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|309|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr58Thr/c.174C>A|224|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.5|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|230|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.4|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15651375 SNP-3.15650021. C A . . PR;EFF=intron_variant(MODIFIER|||c.542-47C>A|334|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.1|5|1),intron_variant(MODIFIER|||c.212-47C>A|224|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.5|4|1),intron_variant(MODIFIER|||c.542-107C>A|314|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.2|5|1),intron_variant(MODIFIER|||c.542-122C>A|309|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.3|5|1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15661274 SNP-3.15659920. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||265|c.-265T>C|87|LOC_Os03g27340|protein_coding|CODING|LOC_Os03g27340.1|1|1),5_prime_UTR_variant(MODIFIER||265|c.-265T>C|87|LOC_Os03g27340|protein_coding|CODING|LOC_Os03g27340.2|1|1) GT ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 +3 15663019 SNP-3.15661665. C A . . PR;EFF=splice_region_variant(LOW|||c.517C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|3|1),splice_region_variant(LOW|||c.517C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|3|1),splice_region_variant(LOW|||c.259C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|4|1),intron_variant(MODIFIER|||c.516+4C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|3|1),intron_variant(MODIFIER|||c.516+4C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|3|1),intron_variant(MODIFIER|||c.258+4C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15665019 SNP-3.15663665. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu392Met/c.1174C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|8|1),missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu306Met/c.916C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|9|1),missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu392Met/c.1174C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15665154 SNP-3.15663800. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gta/Ata|p.Val437Ile/c.1309C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.1220-4C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|8|1),intron_variant(MODIFIER|||c.962-4C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|9|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15667170 SNP-3.15665816. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 15669666 SNP-3.15668312. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 15670928 SNP-3.15669574. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 15671045 SNP-3.15669691. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15672470 SNP-3.15671116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15674475 SNP-3.15673121. C A . . PR;EFF=intron_variant(MODIFIER|||c.96+660C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|1|1) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15675533 SNP-3.15674179. C A . . PR;EFF=intron_variant(MODIFIER|||c.97-89C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|1|1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15678560 SNP-3.15677206. A G . . PR;EFF=synonymous_variant(LOW||acG/acG|p.Thr829Thr/c.2487A>G|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 +3 15678743 SNP-3.15677389. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||114|c.*114C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 ./. 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15679056 SNP-3.15677702. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||427|c.*427C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|4|1) GT 0/0 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 15680226 SNP-3.15678872. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15683355 SNP-3.15682001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 15684816 SNP-3.15683462. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 +3 15685034 SNP-3.15683680. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 15685344 SNP-3.15683990. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 15686242 SNP-3.15684888. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||116|c.*116G>T|315|LOC_Os03g27390|protein_coding|CODING|LOC_Os03g27390.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||116|c.*116G>T|315|LOC_Os03g27390|protein_coding|CODING|LOC_Os03g27390.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15695215 SNP-3.15693861. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 15695269 SNP-3.15693915. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 15696808 SNP-3.15695454. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 15702651 SNP-3.15701297. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 +3 15703264 SNP-3.15701910. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/1 ./. 0/0 0/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 +3 15704365 SNP-3.15703011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15705364 SNP-3.15704010. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 +3 15707329 SNP-3.15705975. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15710789 SNP-3.15709435. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15711523 SNP-3.15710169. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 +3 15712612 SNP-3.15711258. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15712766 SNP-3.15711412. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15714336 SNP-3.15712982. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15716353 SNP-3.15714999. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15717090 SNP-3.15715736. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 +3 15718646 SNP-3.15717292. C A . . PR;EFF=splice_region_variant(LOW|||c.1254G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|5|1),synonymous_variant(LOW|SILENT|acG/acT|p.Thr418Thr/c.1254G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|5|1) GT 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15719030 SNP-3.15717676. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala314Ser/c.940G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15720172 SNP-3.15718818. A G . . PR;EFF=intron_variant(MODIFIER|||c.39-70T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15720536 SNP-3.15719182. A G . . PR;EFF=intron_variant(MODIFIER|||c.39-434T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 +3 15720660 SNP-3.15719306. A G . . PR;EFF=intron_variant(MODIFIER|||c.39-558T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15720901 SNP-3.15719547. C A . . PR;EFF=intron_variant(MODIFIER|||c.38+731G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15720951 SNP-3.15719597. A G . . PR;EFF=intron_variant(MODIFIER|||c.38+681T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 +3 15722768 SNP-3.15721414. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 +3 15722844 SNP-3.15721490. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 15723092 SNP-3.15721738. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 15725488 SNP-3.15724134. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15726847 SNP-3.15725493. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15729319 SNP-3.15727965. C A . . PR;EFF=intron_variant(MODIFIER|||c.938-336G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15729443 SNP-3.15728089. C A . . PR;EFF=intron_variant(MODIFIER|||c.938-460G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15730077 SNP-3.15728723. C A . . PR;EFF=intron_variant(MODIFIER|||c.937+264G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 15730296 SNP-3.15728942. C A . . PR;EFF=intron_variant(MODIFIER|||c.937+45G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 +3 15732998 SNP-3.15731644. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15733340 SNP-3.15731986. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15736711 SNP-3.15735357. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15740027 SNP-3.15738673. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 +3 15741078 SNP-3.15739724. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 +3 15742728 SNP-3.15741374. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15743490 SNP-3.15742136. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15744367 SNP-3.15743013. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 1/1 ./. +3 15745506 SNP-3.15744152. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCc/cAc|p.Pro69His/c.206C>A|150|LOC_Os03g27440|protein_coding|CODING|LOC_Os03g27440.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 ./. 0/0 0/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/0 +3 15748572 SNP-3.15747218. C A . . PR;EFF=intron_variant(MODIFIER|||c.-96-80C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|1|1),intron_variant(MODIFIER|||c.93+254C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|2|1) GT 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15750549 SNP-3.15749195. C A . . PR;EFF=intron_variant(MODIFIER|||c.406-437C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|5|1),intron_variant(MODIFIER|||c.322-437C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|5|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15751111 SNP-3.15749757. C A . . PR;EFF=intron_variant(MODIFIER|||c.509+22C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|6|1),intron_variant(MODIFIER|||c.425+22C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|6|1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15751427 SNP-3.15750073. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe171Leu/c.513C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe199Leu/c.597C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||3412|c.*1612G>T|405|LOC_Os03g27460|protein_coding|CODING|LOC_Os03g27460.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15762346 SNP-3.15760992. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 15763066 SNP-3.15761712. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 15764011 SNP-3.15762657. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAg/cCg|p.Gln414Pro/c.1241T>C|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|cAg/cCg|p.Gln413Pro/c.1238T>C|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 15766609 SNP-3.15765255. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly134Gly/c.402G>T|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly134Gly/c.402G>T|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15766800 SNP-3.15765446. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Ttc|p.Val104Phe/c.310G>T|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|3|1),missense_variant(MODERATE|MISSENSE|Gtc/Ttc|p.Val104Phe/c.310G>T|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|3|1) GT 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 15767218 SNP-3.15765864. C A . . PR;EFF=synonymous_variant(LOW||aTc/aTc|p.Ile29Ile/c.86G>T|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||aTc/aTc|p.Ile29Ile/c.86G>T|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15769262 SNP-3.15767908. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15769501 SNP-3.15768147. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/1 ./. 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 +3 15770793 SNP-3.15769439. A G . . PR;EFF=intron_variant(MODIFIER|||c.267+108T>C|113|LOC_Os03g27484|protein_coding|CODING|LOC_Os03g27484.1|3|1) GT ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/1 0/1 0/1 0/1 0/1 1/1 ./. 0/1 ./. ./. 0/1 0/0 0/1 0/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. 0/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 0/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/1 0/0 0/1 +3 15771714 SNP-3.15770360. C A . . PR;EFF=intron_variant(MODIFIER|||c.157+486G>T|113|LOC_Os03g27484|protein_coding|CODING|LOC_Os03g27484.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 15773322 SNP-3.15771968. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15775573 SNP-3.15774219. C A . . PR;EFF=intron_variant(MODIFIER|||c.259-421C>A|122|LOC_Os03g27490|protein_coding|CODING|LOC_Os03g27490.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 15776058 SNP-3.15774704. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCc/aAc|p.Thr108Asn/c.323C>A|122|LOC_Os03g27490|protein_coding|CODING|LOC_Os03g27490.1|2|1) GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15777218 SNP-3.15775864. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15779971 SNP-3.15778617. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15780788 SNP-3.15779434. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly280Gly/c.840G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 +3 15782589 SNP-3.15781235. C A . . PR;EFF=intron_variant(MODIFIER|||c.375+105G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|4|1) GT ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 +3 15782853 SNP-3.15781499. C A . . PR;EFF=intron_variant(MODIFIER|||c.307-91G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|3|1) GT 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 15784197 SNP-3.15782843. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaG/aaT|p.Lys50Asn/c.150G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15792724 SNP-3.15791370. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agg/Tgg|p.Arg142Trp/c.424G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15794165 SNP-3.15792811. C A . . PR;EFF=intron_variant(MODIFIER|||c.413-1430G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15794967 SNP-3.15793613. C A . . PR;EFF=intron_variant(MODIFIER|||c.412+675G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15795700 SNP-3.15794346. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|atG/atT|p.Met118Ile/c.354G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1) GT 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15795737 SNP-3.15794383. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His106Leu/c.317G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15795753 SNP-3.15794399. C A . . PR;EFF=synonymous_variant(LOW||Tgt/Tgt|p.Cys101Cys/c.301G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 15796375 SNP-3.15795021. C A . . PR;EFF=intron_variant(MODIFIER|||c.128+156G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|1|1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15802277 SNP-3.15800923. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 +3 15803454 SNP-3.15802100. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15803470 SNP-3.15802116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 +3 15804561 SNP-3.15803207. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15804879 SNP-3.15803525. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15808214 SNP-3.15806860. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15808331 SNP-3.15806977. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15808814 SNP-3.15807460. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15809084 SNP-3.15807730. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15809261 SNP-3.15807907. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15809606 SNP-3.15808252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15809832 SNP-3.15808478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15810017 SNP-3.15808663. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15812305 SNP-3.15810951. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaC/aaA|p.Asn30Lys/c.90C>A|128|LOC_Os03g27580|protein_coding|CODING|LOC_Os03g27580.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15813860 SNP-3.15812506. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15814019 SNP-3.15812665. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15814535 SNP-3.15813181. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 1/1 +3 15814961 SNP-3.15813607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15815100 SNP-3.15813746. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15815426 SNP-3.15814072. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15816152 SNP-3.15814798. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15819390 SNP-3.15818036. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15820972 SNP-3.15819618. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15824185 SNP-3.15822831. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||27|c.*27G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1505|c.*960G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1964|c.*969G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 15824804 SNP-3.15823450. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acT|p.Thr427Thr/c.1281G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1345|c.*350G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||886|c.*801G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 +3 15826299 SNP-3.15824945. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn305Asn/c.915G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn343Asn/c.1029G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn343Asn/c.1029G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15826347 SNP-3.15824993. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaG/gaT|p.Glu289Asp/c.867G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|6|1),missense_variant(MODERATE|MISSENSE|gaG/gaT|p.Glu327Asp/c.981G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|7|1),missense_variant(MODERATE|MISSENSE|gaG/gaT|p.Glu327Asp/c.981G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|7|1) GT 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 15830365 SNP-3.15829011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15833405 SNP-3.15832051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15833795 SNP-3.15832441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/1 ./. ./. ./. 1/1 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15835616 SNP-3.15834262. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15836215 SNP-3.15834861. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. +3 15836610 SNP-3.15835256. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15839721 SNP-3.15838367. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15841147 SNP-3.15839793. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15842052 SNP-3.15840698. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly101Gly/c.303G>T|151|LOC_Os03g27630|protein_coding|CODING|LOC_Os03g27630.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 +3 15842242 SNP-3.15840888. C A . . PR;EFF=intron_variant(MODIFIER|||c.288+101G>T|151|LOC_Os03g27630|protein_coding|CODING|LOC_Os03g27630.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15847180 SNP-3.15845826. C A . . PR;EFF=synonymous_variant(LOW||Atc/Atc|p.Ile131Ile/c.391C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 15847403 SNP-3.15846049. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cAt|p.Pro205His/c.614C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15847427 SNP-3.15846073. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile213Asn/c.638C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15847481 SNP-3.15846127. C A . . PR;EFF=synonymous_variant(LOW||tAc/tAc|p.Tyr231Tyr/c.692C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15848368 SNP-3.15847014. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/0 1/1 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15848764 SNP-3.15847410. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. ./. 1/1 0/0 1/1 +3 15848878 SNP-3.15847524. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15853768 SNP-3.15852414. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 ./. 0/0 1/1 0/1 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/1 +3 15857444 SNP-3.15856090. C A . . PR;EFF=intron_variant(MODIFIER|||c.427-46G>T|569|LOC_Os03g27670|protein_coding|CODING|LOC_Os03g27670.1|1|1) GT 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/1 0/1 0/1 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15860365 SNP-3.15859011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/1 ./. ./. 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15860636 SNP-3.15859282. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15862776 SNP-3.15861422. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15865627 SNP-3.15864273. C A . . PR;EFF=intron_variant(MODIFIER|||c.41-1006G>T|190|LOC_Os03g27680|protein_coding|CODING|LOC_Os03g27680.1|1|1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 15865779 SNP-3.15864425. C A . . PR;EFF=intron_variant(MODIFIER|||c.41-1158G>T|190|LOC_Os03g27680|protein_coding|CODING|LOC_Os03g27680.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15867554 SNP-3.15866200. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/1 ./. 0/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 +3 15869927 SNP-3.15868573. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 15869964 SNP-3.15868610. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 0/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15871283 SNP-3.15869929. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 +3 15871582 SNP-3.15870228. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15872706 SNP-3.15871352. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15873707 SNP-3.15872353. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile12Lys/c.35C>A|102|LOC_Os03g27690|protein_coding|CODING|LOC_Os03g27690.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 15874648 SNP-3.15873294. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 +3 15877499 SNP-3.15876145. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15877965 SNP-3.15876611. C A . . PR;EFF=intron_variant(MODIFIER|||c.471-19G>T|214|LOC_Os03g27700|protein_coding|CODING|LOC_Os03g27700.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15881921 SNP-3.15880567. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15883684 SNP-3.15882330. A G . . PR;EFF=intron_variant(MODIFIER|||c.52+109A>G|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|1|1) GT 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 +3 15884489 SNP-3.15883135. C A . . PR;EFF=intron_variant(MODIFIER|||c.52+914C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15886037 SNP-3.15884683. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtA|p.Val193Val/c.579C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|2|1) GT 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 +3 15886252 SNP-3.15884898. C A . . PR;EFF=intron_variant(MODIFIER|||c.588+206C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|2|1) GT 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15886445 SNP-3.15885091. C A . . PR;EFF=intron_variant(MODIFIER|||c.589-254C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|2|1) GT 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15897972 SNP-3.15896618. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15898240 SNP-3.15896886. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 15900299 SNP-3.15898945. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 15902939 SNP-3.15901585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 +3 15903204 SNP-3.15901850. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 +3 15903642 SNP-3.15902288. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 15904461 SNP-3.15903107. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 +3 15907342 SNP-3.15905988. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15910577 SNP-3.15909223. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala49Ser/c.145G>T|308|LOC_Os03g27760|protein_coding|CODING|LOC_Os03g27760.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15912349 SNP-3.15910995. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 1/1 ./. ./. 0/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 15912431 SNP-3.15911077. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 15915064 SNP-3.15913710. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 15915708 SNP-3.15914354. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. ./. 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 +3 15916013 SNP-3.15914659. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 15917390 SNP-3.15916036. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 15917486 SNP-3.15916132. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 +3 15917567 SNP-3.15916213. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 +3 15917764 SNP-3.15916410. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 15919165 SNP-3.15917811. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 +3 15919943 SNP-3.15918589. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 15921499 SNP-3.15920145. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 15922395 SNP-3.15921041. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 +3 15922480 SNP-3.15921126. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 +3 15923846 SNP-3.15922492. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15923992 SNP-3.15922638. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||621|c.*621T>C|330|LOC_Os03g27770|protein_coding|CODING|LOC_Os03g27770.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 15927697 SNP-3.15926343. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15929137 SNP-3.15927783. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 +3 15929691 SNP-3.15928337. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 +3 15930366 SNP-3.15929012. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 15931727 SNP-3.15930373. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15931993 SNP-3.15930639. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 0/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. +3 15934316 SNP-3.15932962. C A . . PR;EFF=intron_variant(MODIFIER|||c.413-22C>A|444|LOC_Os03g27780|protein_coding|CODING|LOC_Os03g27780.1|2|1),intron_variant(MODIFIER|||c.413-22C>A|439|LOC_Os03g27780|protein_coding|CODING|LOC_Os03g27780.2|2|1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15937104 SNP-3.15935750. C A . . PR;EFF=splice_region_variant(LOW|||c.439G>T|155|LOC_Os03g27790|protein_coding|CODING|LOC_Os03g27790.1|2|1),intron_variant(MODIFIER|||c.438+5G>T|155|LOC_Os03g27790|protein_coding|CODING|LOC_Os03g27790.1|2|1) GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 +3 15940139 SNP-3.15938785. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Tct|p.Pro544Ser/c.1630G>T|776|LOC_Os03g27800|protein_coding|CODING|LOC_Os03g27800.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15941372 SNP-3.15940018. A G . . PR;EFF=intron_variant(MODIFIER|||c.522+100T>C|776|LOC_Os03g27800|protein_coding|CODING|LOC_Os03g27800.1|2|1) GT ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 15943543 SNP-3.15942189. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15943766 SNP-3.15942412. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 15944709 SNP-3.15943355. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15945019 SNP-3.15943665. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15945110 SNP-3.15943756. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 +3 15946086 SNP-3.15944732. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15947339 SNP-3.15945985. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 +3 15947702 SNP-3.15946348. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15947731 SNP-3.15946377. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15948026 SNP-3.15946672. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 +3 15950880 SNP-3.15949526. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|tTa/tAa|p.Leu190*/c.569C>A|193|LOC_Os03g27810|protein_coding|CODING|LOC_Os03g27810.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15953451 SNP-3.15952097. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 15954887 SNP-3.15953533. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 +3 15955221 SNP-3.15953867. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. +3 15956001 SNP-3.15954647. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 ./. 1/1 0/1 ./. ./. ./. ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 +3 15962868 SNP-3.15961514. A G . . PR;EFF=intron_variant(MODIFIER|||c.445-503A>G|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|3|1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 15963726 SNP-3.15962372. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Aat|p.His242Asn/c.724C>A|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|5|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15964296 SNP-3.15962942. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val403Asp/c.1208C>A|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15964532 SNP-3.15963178. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Act|p.Ser482Thr/c.1444C>A|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15966855 SNP-3.15965501. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 +3 15968302 SNP-3.15966948. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||685|c.*685T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 15968647 SNP-3.15967293. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||340|c.*340T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 +3 15968918 SNP-3.15967564. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||69|c.*69T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 +3 15969236 SNP-3.15967882. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctC|p.Leu190Leu/c.570T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/1 ./. ./. ./. ./. ./. 0/1 ./. ./. 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 0/1 ./. ./. ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 ./. ./. ./. 0/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 +3 15970345 SNP-3.15968991. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15970854 SNP-3.15969500. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 +3 15971326 SNP-3.15969972. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 15972105 SNP-3.15970751. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 ./. ./. ./. 0/0 1/1 0/1 0/0 ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 +3 15974601 SNP-3.15973247. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 15976989 SNP-3.15975635. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 15977444 SNP-3.15976090. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 15978213 SNP-3.15976859. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15979612 SNP-3.15978258. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 15979735 SNP-3.15978381. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 +3 15980358 SNP-3.15979004. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 +3 15981578 SNP-3.15980224. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15983192 SNP-3.15981838. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 +3 15985025 SNP-3.15983671. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 ./. ./. 1/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 +3 15988366 SNP-3.15987012. C A . . PR;EFF=intron_variant(MODIFIER|||c.386-66C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|3|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 15989426 SNP-3.15988072. C A . . PR;EFF=intron_variant(MODIFIER|||c.462-722C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|4|1) GT ./. 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 ./. ./. 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 15990244 SNP-3.15988890. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys186Lys/c.558C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 +3 15991434 SNP-3.15990080. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaG/gaA|p.Glu396Glu/c.1188C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 15997983 SNP-3.15996629. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 15998144 SNP-3.15996790. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/0 +3 16000772 SNP-3.15999418. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16001391 SNP-3.16000037. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 16001554 SNP-3.16000200. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 +3 16012630 SNP-3.16011276. A G . . PR;EFF=splice_region_variant(LOW|||c.478T>C|899|LOC_Os03g27870|protein_coding|CODING|LOC_Os03g27870.1|6|1),intron_variant(MODIFIER|||c.478-3T>C|899|LOC_Os03g27870|protein_coding|CODING|LOC_Os03g27870.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 +3 16012660 SNP-3.16011306. C A . . PR;EFF=intron_variant(MODIFIER|||c.478-33G>T|899|LOC_Os03g27870|protein_coding|CODING|LOC_Os03g27870.1|6|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16019024 SNP-3.16017670. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 +3 16019413 SNP-3.16018059. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 +3 16020114 SNP-3.16018760. A G . . PR;EFF=intron_variant(MODIFIER|||c.214+211A>G|148|LOC_Os03g27890|protein_coding|CODING|LOC_Os03g27890.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 +3 16021654 SNP-3.16020300. A G . . PR;EFF=synonymous_variant(LOW||Gac/Gac|p.Asp86Asp/c.256A>G|148|LOC_Os03g27890|protein_coding|CODING|LOC_Os03g27890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 +3 16022203 SNP-3.16020849. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. +3 16023464 SNP-3.16022110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 +3 16026232 SNP-3.16024878. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16030064 SNP-3.16028710. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcG|p.Ser1031Ser/c.3093A>G|1326|LOC_Os03g27910|protein_coding|CODING|LOC_Os03g27910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 +3 16031042 SNP-3.16029688. A G . . PR;EFF=intron_variant(MODIFIER|||c.3461-171A>G|1326|LOC_Os03g27910|protein_coding|CODING|LOC_Os03g27910.1|5|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16031456 SNP-3.16030102. A G . . PR;EFF=intron_variant(MODIFIER|||c.3618+86A>G|1326|LOC_Os03g27910|protein_coding|CODING|LOC_Os03g27910.1|6|1) GT 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 +3 16034617 SNP-3.16033263. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 +3 16035032 SNP-3.16033678. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 +3 16038010 SNP-3.16036656. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16039908 SNP-3.16038554. C A . . PR;EFF=intron_variant(MODIFIER|||c.150+456C>A|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16040124 SNP-3.16038770. A G . . PR;EFF=intron_variant(MODIFIER|||c.150+672A>G|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|2|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 +3 16041706 SNP-3.16040352. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys232Lys/c.694C>A|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16041891 SNP-3.16040537. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcG|p.Ser293Ser/c.879A>G|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16043518 SNP-3.16042164. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccC/ccA|p.Pro543Pro/c.1629C>A|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|9|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16044322 SNP-3.16042968. A G . . PR;EFF=intron_variant(MODIFIER|||c.1732-168A>G|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|9|1) GT 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16046247 SNP-3.16044893. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 +3 16049910 SNP-3.16048556. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16051156 SNP-3.16049802. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16052453 SNP-3.16051099. A G . . PR;EFF=intron_variant(MODIFIER|||c.272+128A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.365+35A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16052936 SNP-3.16051582. A G . . PR;EFF=intron_variant(MODIFIER|||c.272+611A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.365+518A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 16053713 SNP-3.16052359. A G . . PR;EFF=intron_variant(MODIFIER|||c.273-744A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.366-744A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 +3 16054009 SNP-3.16052655. A G . . PR;EFF=intron_variant(MODIFIER|||c.273-448A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.366-448A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16056312 SNP-3.16054958. C A . . PR;EFF=intron_variant(MODIFIER|||c.794+91C>A|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|8|1),intron_variant(MODIFIER|||c.701+91C>A|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16057891 SNP-3.16056537. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctt/Gtt|p.Leu521Val/c.1561A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Ctt/Gtt|p.Leu490Val/c.1468A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16058615 SNP-3.16057261. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16059332 SNP-3.16057978. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 16059864 SNP-3.16058510. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16070188 SNP-3.16068834. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16072044 SNP-3.16070690. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cAc|p.Arg347His/c.1040C>A|492|LOC_Os03g27980|protein_coding|CODING|LOC_Os03g27980.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 +3 16074898 SNP-3.16073544. A G . . PR;EFF=intron_variant(MODIFIER|||c.1423-152T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|11|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 +3 16075626 SNP-3.16074272. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cTt|p.His354Leu/c.1061G>T|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16075691 SNP-3.16074337. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcC|p.Ser332Ser/c.996T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|10|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16076230 SNP-3.16074876. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gaT/gaC|p.Asp244Asp/c.732T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|9|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16076306 SNP-3.16074952. C A . . PR;EFF=intron_variant(MODIFIER|||c.693-37G>T|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16078859 SNP-3.16077505. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||216|c.-216T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16080275 SNP-3.16078921. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 +3 16081791 SNP-3.16080437. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 +3 16081893 SNP-3.16080539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16082458 SNP-3.16081104. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16084305 SNP-3.16082951. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 16085089 SNP-3.16083735. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16085268 SNP-3.16083914. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16085337 SNP-3.16083983. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16086121 SNP-3.16084767. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 +3 16087398 SNP-3.16086044. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 +3 16088494 SNP-3.16087140. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 +3 16092466 SNP-3.16091112. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 +3 16097968 SNP-3.16096614. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taC/taG|p.Tyr742*/c.2226A>G|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g28010|LOC_Os03g28010|1|1.00);NMD=(LOC_Os03g28010|LOC_Os03g28010|1|1.00) GT 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 +3 16099002 SNP-3.16097648. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttC/ttG|p.Phe987Leu/c.2961A>G|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 +3 16100900 SNP-3.16099546. C A . . PR;EFF=intron_variant(MODIFIER|||c.3907-279C>A|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|10|1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 +3 16102230 SNP-3.16100876. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val1653Gly/c.4958A>G|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 +3 16109853 SNP-3.16108499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16110799 SNP-3.16109445. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 +3 16111699 SNP-3.16110345. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 +3 16112054 SNP-3.16110700. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 +3 16115076 SNP-3.16113722. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGc/gCc|p.Gly33Ala/c.98T>C|155|LOC_Os03g28030|protein_coding|CODING|LOC_Os03g28030.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 +3 16116032 SNP-3.16114678. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. +3 16116761 SNP-3.16115407. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 +3 16117174 SNP-3.16115820. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 +3 16118924 SNP-3.16117570. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16121614 SNP-3.16120260. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16123637 SNP-3.16122283. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16124670 SNP-3.16123316. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/1 0/1 ./. ./. ./. 0/1 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 +3 16126350 SNP-3.16124996. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16127787 SNP-3.16126433. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16128346 SNP-3.16126992. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 +3 16131077 SNP-3.16129723. A G . . PR;EFF=synonymous_variant(LOW||Gct/Gct|p.Ala163Ala/c.487A>G|764|LOC_Os03g28060|protein_coding|CODING|LOC_Os03g28060.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 +3 16132391 SNP-3.16131037. A G . . PR;EFF=synonymous_variant(LOW||Gct/Gct|p.Ala491Ala/c.1471A>G|764|LOC_Os03g28060|protein_coding|CODING|LOC_Os03g28060.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 +3 16133002 SNP-3.16131648. A G . . PR;EFF=synonymous_variant(LOW||caG/caG|p.Gln667Gln/c.2001A>G|764|LOC_Os03g28060|protein_coding|CODING|LOC_Os03g28060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 +3 16135246 SNP-3.16133892. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16135358 SNP-3.16134004. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16139308 SNP-3.16137954. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16140836 SNP-3.16139482. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 16142450 SNP-3.16141096. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 +3 16142960 SNP-3.16141606. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16146021 SNP-3.16144667. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 16147747 SNP-3.16146393. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16147908 SNP-3.16146554. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 +3 16149035 SNP-3.16147681. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 16150473 SNP-3.16149119. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 +3 16155821 SNP-3.16154467. A G . . PR;EFF=splice_donor_variant(HIGH|||c.60T>C|365|LOC_Os03g28100|protein_coding|CODING|LOC_Os03g28100.1|1|1),intron_variant(MODIFIER|||c.59+1T>C|365|LOC_Os03g28100|protein_coding|CODING|LOC_Os03g28100.1|1|1);LOF=(LOC_Os03g28100|LOC_Os03g28100|1|1.00) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 +3 16156517 SNP-3.16155163. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 +3 16158960 SNP-3.16157606. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgT/cgC|p.Arg1273Arg/c.3819T>C|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|4|1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 +3 16158961 SNP-3.16157607. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg1273Pro/c.3818T>C|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 1/1 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 1/1 +3 16159744 SNP-3.16158390. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAt/aTt|p.Asn1032Ile/c.3095G>T|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16159923 SNP-3.16158569. A G . . PR;EFF=synonymous_variant(LOW||gaC/gaC|p.Asp972Asp/c.2916T>C|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 +3 16163231 SNP-3.16161877. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16163777 SNP-3.16162423. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 +3 16164237 SNP-3.16162883. C A . . PR;EFF=intron_variant(MODIFIER|||c.234-11G>T|156|LOC_Os03g28120|protein_coding|CODING|LOC_Os03g28120.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16167564 SNP-3.16166210. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16167942 SNP-3.16166588. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. +3 16168255 SNP-3.16166901. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 +3 16169101 SNP-3.16167747. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 +3 16173019 SNP-3.16171665. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16173556 SNP-3.16172202. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/1 0/0 ./. ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16173793 SNP-3.16172439. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 16175848 SNP-3.16174494. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16177665 SNP-3.16176311. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 16178411 SNP-3.16177057. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. +3 16180766 SNP-3.16179412. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 +3 16184927 SNP-3.16183573. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaC/gaT|p.Asp1583Asp/c.4749G>T|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 16185673 SNP-3.16184319. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Cca|p.Ala1335Pro/c.4003T>C|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 +3 16186851 SNP-3.16185497. A G . . PR;EFF=intron_variant(MODIFIER|||c.3408+265T>C|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|8|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 +3 16188584 SNP-3.16187230. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cCt|p.His773Pro/c.2318T>C|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 16190367 SNP-3.16189013. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccT|p.Pro569Pro/c.1707G>T|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16195500 SNP-3.16194146. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16196752 SNP-3.16195398. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 +3 16196939 SNP-3.16195585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16197579 SNP-3.16196225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16197647 SNP-3.16196293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 16199091 SNP-3.16197737. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 +3 16202379 SNP-3.16201026. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 16202825 SNP-3.16201472. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 +3 16203548 SNP-3.16202195. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 +3 16204694 SNP-3.16203341. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 16204817 SNP-3.16203464. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/1 1/1 ./. ./. 0/0 0/1 ./. 0/1 ./. 0/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16205976 SNP-3.16204623. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 +3 16207401 SNP-3.16206048. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 16208608 SNP-3.16207255. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 +3 16210681 SNP-3.16209328. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16211192 SNP-3.16209839. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16211757 SNP-3.16210404. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 16212460 SNP-3.16211107. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16212633 SNP-3.16211280. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 +3 16214847 SNP-3.16213494. A G . . PR;EFF=intron_variant(MODIFIER|||c.209+12A>G|78|LOC_Os03g28170|protein_coding|CODING|LOC_Os03g28170.1|2|1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16216727 SNP-3.16215374. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 +3 16216860 SNP-3.16215507. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 +3 16221494 SNP-3.16220141. A G . . PR;EFF=intron_variant(MODIFIER|||c.216-181T>C|165|LOC_Os03g28180|protein_coding|CODING|LOC_Os03g28180.1|1|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 +3 16221513 SNP-3.16220160. A G . . PR;EFF=intron_variant(MODIFIER|||c.216-200T>C|165|LOC_Os03g28180|protein_coding|CODING|LOC_Os03g28180.1|1|1) GT 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. +3 16222648 SNP-3.16221295. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 16225523 SNP-3.16224170. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 +3 16227575 SNP-3.16226222. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 +3 16228073 SNP-3.16226720. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcg/Ccg|p.Ala40Pro/c.118T>C|177|LOC_Os03g28190|protein_coding|CODING|LOC_Os03g28190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 +3 16241227 SNP-3.16239874. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acA/acT|p.Thr115Thr/c.345G>T|293|LOC_Os03g28230|protein_coding|CODING|LOC_Os03g28230.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16244812 SNP-3.16243459. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16246646 SNP-3.16245293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 +3 16248317 SNP-3.16246964. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 +3 16248339 SNP-3.16246986. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 +3 16249091 SNP-3.16247738. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 +3 16249376 SNP-3.16248023. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 +3 16249805 SNP-3.16248452. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 16249928 SNP-3.16248575. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16250175 SNP-3.16248822. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. +3 16250281 SNP-3.16248928. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 +3 16251439 SNP-3.16250086. A G . . PR;EFF=intron_variant(MODIFIER|||c.196-443T>C|145|LOC_Os03g28260|protein_coding|CODING|LOC_Os03g28260.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 +3 16252381 SNP-3.16251028. C A . . PR;EFF=intron_variant(MODIFIER|||c.195+142G>T|145|LOC_Os03g28260|protein_coding|CODING|LOC_Os03g28260.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16253135 SNP-3.16251782. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 16255263 SNP-3.16253910. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16257142 SNP-3.16255789. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||104|c.*104T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16258144 SNP-3.16256791. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Tgc|p.Arg1274Cys/c.3820G>T|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16258485 SNP-3.16257132. C A . . PR;EFF=intron_variant(MODIFIER|||c.3708+199G>T|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|7|1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16258806 SNP-3.16257453. A G . . PR;EFF=intron_variant(MODIFIER|||c.3607-21T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 +3 16258883 SNP-3.16257530. A G . . PR;EFF=intron_variant(MODIFIER|||c.3607-98T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|6|1) GT 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 +3 16259008 SNP-3.16257655. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Aga/Cga|p.Arg1197Arg/c.3589T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 +3 16260428 SNP-3.16259075. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tAc/tCc|p.Tyr1032Ser/c.3095T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 +3 16260660 SNP-3.16259307. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcc/Ccc|p.Ala955Pro/c.2863T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 +3 16263079 SNP-3.16261725. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg684Pro/c.2051T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16264069 SNP-3.16262715. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAg/gTg|p.Glu354Val/c.1061G>T|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. ./. ./. 0/0 0/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16266636 SNP-3.16265282. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16268544 SNP-3.16267190. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16269971 SNP-3.16268617. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln105Glu/c.313A>G|144|LOC_Os03g28280|protein_coding|CODING|LOC_Os03g28280.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16270468 SNP-3.16269114. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16271615 SNP-3.16270261. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16275105 SNP-3.16273751. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16275267 SNP-3.16273913. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16276606 SNP-3.16275252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16277496 SNP-3.16276142. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16278608 SNP-3.16277254. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16279097 SNP-3.16277743. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 16279194 SNP-3.16277840. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 +3 16283872 SNP-3.16282518. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Gca|p.Ser192Ala/c.574A>G|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Tca/Gca|p.Ser192Ala/c.574A>G|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/1 ./. 0/1 1/1 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 +3 16283978 SNP-3.16282624. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTc/aAc|p.Ile227Asn/c.680C>A|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aTc/aAc|p.Ile227Asn/c.680C>A|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 +3 16284368 SNP-3.16283014. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His357His/c.1070C>A|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cAt/cAt|p.His357His/c.1070C>A|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 +3 16284457 SNP-3.16283103. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cta/Gta|p.Leu387Val/c.1159A>G|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Cta/Gta|p.Leu387Val/c.1159A>G|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16289377 SNP-3.16288023. C A . . PR;EFF=intron_variant(MODIFIER|||c.2399-650C>A|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|7|1),intron_variant(MODIFIER|||c.*926-650C>A|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|5|1) GT ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 16293444 SNP-3.16292090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16294316 SNP-3.16292962. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gTt|p.Ala672Val/c.2015G>T|748|LOC_Os03g28310|protein_coding|CODING|LOC_Os03g28310.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16296108 SNP-3.16294754. C A . . PR;EFF=synonymous_variant(LOW||Tct/Tct|p.Ser75Ser/c.223G>T|748|LOC_Os03g28310|protein_coding|CODING|LOC_Os03g28310.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16297362 SNP-3.16296008. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16298293 SNP-3.16296939. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 +3 16300464 SNP-3.16299110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16301802 SNP-3.16300448. C A . . PR;EFF=synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|15|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|15|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|15|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||926|c.*832G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 +3 16305363 SNP-3.16304009. C A . . PR;EFF=intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|2|1),intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|2|1),intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|2|1),intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|1|1),intron_variant(MODIFIER|||c.111-144G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|2|1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16305784 SNP-3.16304430. A G . . PR;EFF=intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|2|1),intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|2|1),intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|2|1),intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|1|1),intron_variant(MODIFIER|||c.110+164T>C|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16306048 SNP-3.16304694. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|1|1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 +3 16307341 SNP-3.16305987. C A . . PR;EFF=intron_variant(MODIFIER|||c.-31+192G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|1|1),intron_variant(MODIFIER|||c.-31+192G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|1|1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16307741 SNP-3.16306387. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16308213 SNP-3.16306859. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 +3 16308525 SNP-3.16307171. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16309467 SNP-3.16308113. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 16310777 SNP-3.16309423. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16310932 SNP-3.16309578. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16314149 SNP-3.16312795. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16315527 SNP-3.16314173. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 +3 16317559 SNP-3.16316205. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16321861 SNP-3.16320507. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16322325 SNP-3.16320971. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 +3 16324424 SNP-3.16323070. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16325371 SNP-3.16324017. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16326374 SNP-3.16325020. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16330389 SNP-3.16329035. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16331393 SNP-3.16330039. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg40Arg/c.119A>G|266|LOC_Os03g28350|protein_coding|CODING|LOC_Os03g28350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 +3 16331681 SNP-3.16330327. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aGg|p.Thr136Arg/c.407A>G|266|LOC_Os03g28350|protein_coding|CODING|LOC_Os03g28350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/1 0/0 1/1 +3 16331717 SNP-3.16330363. C A . . PR;EFF=synonymous_variant(LOW||tAc/tAc|p.Tyr148Tyr/c.443C>A|266|LOC_Os03g28350|protein_coding|CODING|LOC_Os03g28350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16333225 SNP-3.16331871. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16333844 SNP-3.16332490. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 +3 16334375 SNP-3.16333021. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtA/gtC|p.Val309Val/c.927T>C|352|LOC_Os03g28360|protein_coding|CODING|LOC_Os03g28360.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16334945 SNP-3.16333591. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttA/ttT|p.Leu203Phe/c.609G>T|352|LOC_Os03g28360|protein_coding|CODING|LOC_Os03g28360.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16338196 SNP-3.16336842. C A . . PR;EFF=intron_variant(MODIFIER|||c.161+238G>T|352|LOC_Os03g28360|protein_coding|CODING|LOC_Os03g28360.1|1|1) GT ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16339322 SNP-3.16337968. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 +3 16340091 SNP-3.16338737. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 +3 16340649 SNP-3.16339295. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 16341869 SNP-3.16340515. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16342531 SNP-3.16341177. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 +3 16342579 SNP-3.16341225. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/1 ./. 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16342932 SNP-3.16341578. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/1 ./. 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16345758 SNP-3.16344404. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 1/1 ./. 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16346000 SNP-3.16344646. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 +3 16349441 SNP-3.16348087. A G . . PR;EFF=synonymous_variant(LOW||gGc/gGc|p.Gly849Gly/c.2546A>G|1275|LOC_Os03g28370|protein_coding|CODING|LOC_Os03g28370.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16352546 SNP-3.16351192. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 +3 16353769 SNP-3.16352415. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aaa/Taa|p.Lys511*/c.1531G>T|704|LOC_Os03g28380|protein_coding|CODING|LOC_Os03g28380.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g28380|LOC_Os03g28380|1|1.00);NMD=(LOC_Os03g28380|LOC_Os03g28380|1|1.00) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 +3 16356870 SNP-3.16355516. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/1 +3 16359129 SNP-3.16357775. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tAt|p.Phe101Tyr/c.302C>A|170|LOC_Os03g28389|protein_coding|CODING|LOC_Os03g28389.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||686|c.*686G>T|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 +3 16359580 SNP-3.16358226. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||235|c.*235G>T|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/0 +3 16359798 SNP-3.16358444. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||17|c.*17T>C|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 +3 16361579 SNP-3.16360225. A G . . PR;EFF=intron_variant(MODIFIER|||c.158+329T>C|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|2|1) GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 +3 16361683 SNP-3.16360329. A G . . PR;EFF=intron_variant(MODIFIER|||c.158+225T>C|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 0/1 0/1 0/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 +3 16366254 SNP-3.16383185. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16368468 SNP-3.16380971. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16379310 SNP-3.16370129. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16394336 SNP-3.16392980. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 +3 16399536 SNP-3.16398180. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16399742 SNP-3.16398386. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 +3 16400147 SNP-3.16398791. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 +3 16400449 SNP-3.16399093. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 +3 16400652 SNP-3.16399296. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gTg|p.Ala102Val/c.305G>T|125|LOC_Os03g28920|protein_coding|CODING|LOC_Os03g28920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 +3 16400670 SNP-3.16399314. C A . . PR;EFF=synonymous_variant(LOW||gTg/gTg|p.Val96Val/c.287G>T|125|LOC_Os03g28920|protein_coding|CODING|LOC_Os03g28920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 +3 16400718 SNP-3.16399362. C A . . PR;EFF=synonymous_variant(LOW||cTa/cTa|p.Leu80Leu/c.239G>T|125|LOC_Os03g28920|protein_coding|CODING|LOC_Os03g28920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 +3 16401184 SNP-3.16399828. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 16407522 SNP-3.16406166. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16410397 SNP-3.16409041. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. +3 16411046 SNP-3.16409690. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 +3 16412003 SNP-3.16410647. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16414648 SNP-3.16413292. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 +3 16415105 SNP-3.16413749. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 +3 16417170 SNP-3.16415814. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Agg/Cgg|p.Arg273Arg/c.817T>C|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 ./. 0/1 0/1 0/0 1/1 0/1 0/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 +3 16417403 SNP-3.16416047. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gTt|p.Asp195Val/c.584G>T|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 +3 16417511 SNP-3.16416155. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gCt|p.Asp159Ala/c.476T>C|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 +3 16417802 SNP-3.16416446. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aTg|p.Thr62Met/c.185G>T|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16419503 SNP-3.16418147. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 16420292 SNP-3.16418936. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16421225 SNP-3.16419869. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16422830 SNP-3.16421474. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16425653 SNP-3.16424297. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16427008 SNP-3.16425652. C A . . PR;EFF=intron_variant(MODIFIER|||c.84+99C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|1|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 +3 16428179 SNP-3.16426823. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro83Pro/c.249C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16431723 SNP-3.16430367. A G . . PR;EFF=intron_variant(MODIFIER|||c.967-253A>G|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|12|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16432162 SNP-3.16430806. C A . . PR;EFF=synonymous_variant(LOW||gcA/gcA|p.Ala360Ala/c.1080C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16433028 SNP-3.16431672. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaA|p.Asp433Glu/c.1299C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16437602 SNP-3.16436246. A G . . PR;EFF=intron_variant(MODIFIER|||c.2032-114A>G|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|22|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16439107 SNP-3.16437751. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acA|p.Thr797Thr/c.2391C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|26|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 +3 16440472 SNP-3.16439116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16442247 SNP-3.16440891. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/1 0/1 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 +3 16442748 SNP-3.16441392. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16444005 SNP-3.16442649. C A . . PR;EFF=intron_variant(MODIFIER|||c.279-297G>T|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|3|1) GT 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 +3 16444551 SNP-3.16443195. A G . . PR;EFF=synonymous_variant(LOW||gCa/gCa|p.Ala71Ala/c.212T>C|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16444877 SNP-3.16443521. C A . . PR;EFF=intron_variant(MODIFIER|||c.184-298G>T|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|2|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 +3 16445595 SNP-3.16444239. C A . . PR;EFF=intron_variant(MODIFIER|||c.183+123G>T|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|2|1) GT 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 +3 16445816 SNP-3.16444460. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggg/Cgg|p.Gly29Arg/c.85T>C|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 +3 16447361 SNP-3.16446005. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16450518 SNP-3.16449162. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val351Val/c.1053A>G|744|LOC_Os03g28980|protein_coding|CODING|LOC_Os03g28980.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 +3 16452818 SNP-3.16451462. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 +3 16454535 SNP-3.16453179. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 +3 16461364 SNP-3.16460008. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 1/1 +3 16462377 SNP-3.16461021. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 +3 16463564 SNP-3.16462208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16464250 SNP-3.16462894. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16464819 SNP-3.16463463. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16465142 SNP-3.16463786. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16465232 SNP-3.16463876. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16465920 SNP-3.16464564. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 +3 16469586 SNP-3.16468230ac. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16470346 SNP-3.16468990. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16473434 SNP-3.16472078. A G . . PR;EFF=intron_variant(MODIFIER|||c.1738-181T>C|921|LOC_Os03g29020|protein_coding|CODING|LOC_Os03g29020.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 +3 16476167 SNP-3.16474811. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 +3 16476452 SNP-3.16475096. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 +3 16477921 SNP-3.16476565. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16478110 SNP-3.16476754. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16478160 SNP-3.16476804. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 16478593 SNP-3.16477237. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 +3 16481773 SNP-3.16480417. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 +3 16483495 SNP-3.16482139. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 +3 16494653 SNP-3.16493297. A G . . PR;EFF=splice_region_variant(LOW|||c.266T>C|767|LOC_Os03g29035|protein_coding|CODING|LOC_Os03g29035.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||aCg/aCg|p.Thr89Thr/c.266T>C|767|LOC_Os03g29035|protein_coding|CODING|LOC_Os03g29035.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 +3 16496539 SNP-3.16495183. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/1 ./. 1/1 0/1 ./. ./. ./. 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/1 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/1 ./. 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 +3 16500736 SNP-3.16499380. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16501781 SNP-3.16500425. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 +3 16506045 SNP-3.16504689. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 +3 16506581 SNP-3.16505225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 0/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 +3 16506692 SNP-3.16505336. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 +3 16509058 SNP-3.16507702. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 +3 16509658 SNP-3.16508302. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 +3 16510248 SNP-3.16508892. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 16510365 SNP-3.16509009. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. ./. +3 16510486 SNP-3.16509130. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 +3 16512835 SNP-3.16511479. C A . . PR;EFF=synonymous_variant(LOW||gaA/gaA|p.Glu54Glu/c.162C>A|114|LOC_Os03g29065|protein_coding|CODING|LOC_Os03g29065.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 +3 16515197 SNP-3.16513841. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 16516237 SNP-3.16514881. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 +3 16518919 SNP-3.16517563. A G . . PR;EFF=synonymous_variant(LOW||tcG/tcG|p.Ser678Ser/c.2034A>G|689|LOC_Os03g29075|protein_coding|CODING|LOC_Os03g29075.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 +3 16521187 SNP-3.16519831. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaA|p.Asn515Lys/c.1545C>A|1006|LOC_Os03g29085|protein_coding|CODING|LOC_Os03g29085.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 +3 16523463 SNP-3.16522107. A G . . PR;EFF=intron_variant(MODIFIER|||c.1880-259T>C|653|LOC_Os03g29100|protein_coding|CODING|LOC_Os03g29100.1|9|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 +3 16524472 SNP-3.16523116. A G . . PR;EFF=intron_variant(MODIFIER|||c.1451+34T>C|653|LOC_Os03g29100|protein_coding|CODING|LOC_Os03g29100.1|7|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 +3 16528169 SNP-3.16526813. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 +3 16528623 SNP-3.16527267. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 +3 16529883 SNP-3.16528527. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 +3 16530467 SNP-3.16529111. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 +3 16530583 SNP-3.16529227. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 16530591 SNP-3.16529235. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16530801 SNP-3.16529445. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 +3 16537232 SNP-3.16535876. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn653Asn/c.1959G>T|863|LOC_Os03g29120|protein_coding|CODING|LOC_Os03g29120.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 16548895 SNP-3.16547539. A G . . PR;EFF=intron_variant(MODIFIER|||c.340+188A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 16548979 SNP-3.16547623. A G . . PR;EFF=intron_variant(MODIFIER|||c.340+272A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16549393 SNP-3.16548037. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-384A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 +3 16549481 SNP-3.16548125. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-296A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 16549648 SNP-3.16548292. C A . . PR;EFF=intron_variant(MODIFIER|||c.341-129C>A|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 +3 16549691 SNP-3.16548335. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-86A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 +3 16549728 SNP-3.16548372. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-49A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 +3 16550325 SNP-3.16548969. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 +3 16550359 SNP-3.16549003. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 +3 16550385 SNP-3.16549029. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 +3 16550983 SNP-3.16549627. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 +3 16551258 SNP-3.16549902. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 +3 16552163 SNP-3.16550807. C A . . PR;EFF=intron_variant(MODIFIER|||c.286+427C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|1|1),intron_variant(MODIFIER|||c.286+427C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|1|1),intron_variant(MODIFIER|||c.286+427C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|1|1) GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 +3 16552494 SNP-3.16551138. C A . . PR;EFF=intron_variant(MODIFIER|||c.286+758C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|1|1),intron_variant(MODIFIER|||c.286+758C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|1|1),intron_variant(MODIFIER|||c.286+758C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|1|1) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16556476 SNP-3.16555120. C A . . PR;EFF=intron_variant(MODIFIER|||c.287-471C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|1|1),intron_variant(MODIFIER|||c.287-471C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|1|1),intron_variant(MODIFIER|||c.287-471C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|1|1) GT 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16557632 SNP-3.16556276. A G . . PR;EFF=intron_variant(MODIFIER|||c.377-564A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|2|1),intron_variant(MODIFIER|||c.377-564A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|2|1),intron_variant(MODIFIER|||c.377-564A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|2|1) GT 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 +3 16559052 SNP-3.16557696. A G . . PR;EFF=intron_variant(MODIFIER|||c.511-218A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|3|1),intron_variant(MODIFIER|||c.511-218A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|3|1),intron_variant(MODIFIER|||c.511-218A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|3|1) GT 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 +3 16559774 SNP-3.16558418. A G . . PR;EFF=intron_variant(MODIFIER|||c.669+346A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|4|1),intron_variant(MODIFIER|||c.669+346A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|4|1),intron_variant(MODIFIER|||c.669+346A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|4|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16560375 SNP-3.16559019. A G . . PR;EFF=intron_variant(MODIFIER|||c.670-226A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|4|1),intron_variant(MODIFIER|||c.670-226A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|4|1),intron_variant(MODIFIER|||c.670-226A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|4|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 +3 16560612 SNP-3.16559256. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly227Gly/c.681A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly227Gly/c.681A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly227Gly/c.681A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16560855 SNP-3.16559499. C A . . PR;EFF=synonymous_variant(LOW||ttA/ttA|p.Leu284Leu/c.852C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||114|c.*114C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.792+132C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|5|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16562821 SNP-3.16561465. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 +3 16564271 SNP-3.16562915. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 +3 16566367 SNP-3.16565011. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/1 0/1 1/1 ./. 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 +3 16566848 SNP-3.16565492. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16569869 SNP-3.16568513. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 +3 16574681 SNP-3.16573325. C A . . PR;EFF=splice_region_variant(LOW|||c.769C>A|561|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.1|5|1),splice_region_variant(LOW|||c.769C>A|474|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.2|5|1),intron_variant(MODIFIER|||c.769-3C>A|561|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.1|5|1),intron_variant(MODIFIER|||c.769-3C>A|474|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.2|5|1) GT 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16576245 SNP-3.16574889. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln339Glu/c.1015A>G|561|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln339Glu/c.1015A>G|474|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.2|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16586851 SNP-3.16585495. C A . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||51|LOC_Os03g29184|protein_coding|CODING|LOC_Os03g29184.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||2|c.-2G>T|51|LOC_Os03g29184|protein_coding|CODING|LOC_Os03g29184.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 +3 16589439 SNP-3.16588083. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 ./. 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 +3 16589518 SNP-3.16588162. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 +3 16589605 SNP-3.16588249. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 +3 16589757 SNP-3.16588401. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 +3 16590643 SNP-3.16589287. A G . . PR;EFF=intron_variant(MODIFIER|||c.78+295A>G|588|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.1|1|1),intron_variant(MODIFIER|||c.78+295A>G|569|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.2|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16591121 SNP-3.16589765. A G . . PR;EFF=intron_variant(MODIFIER|||c.78+773A>G|588|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.1|1|1),intron_variant(MODIFIER|||c.78+773A>G|569|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.2|1|1) GT ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 +3 16594838 SNP-3.16593482. C A . . PR;EFF=intron_variant(MODIFIER|||c.1111-150C>A|588|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.1|4|1),intron_variant(MODIFIER|||c.1054-150C>A|569|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.2|3|1) GT 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 +3 16598761 SNP-3.16597405. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16599384 SNP-3.16598028. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 16600374 SNP-3.16599018. A G . . PR;EFF=intron_variant(MODIFIER|||c.97-380T>C|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 +3 16600820 SNP-3.16599464. C A . . PR;EFF=intron_variant(MODIFIER|||c.96+593G>T|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16600952 SNP-3.16599596. A G . . PR;EFF=intron_variant(MODIFIER|||c.96+461T>C|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 +3 16601019 SNP-3.16599663. C A . . PR;EFF=intron_variant(MODIFIER|||c.96+394G>T|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 1/1 0/1 0/1 0/0 ./. 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16601645 SNP-3.16600289. A G . . PR;EFF=intron_variant(MODIFIER|||c.60+53T>C|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16602272 SNP-3.16600916. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 +3 16608415 SNP-3.16607059. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly235Gly/c.703A>G|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 +3 16608823 SNP-3.16607467. A G . . PR;EFF=intron_variant(MODIFIER|||c.864+247A>G|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|2|1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16609108 SNP-3.16607752. C A . . PR;EFF=intron_variant(MODIFIER|||c.865-175C>A|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|2|1) GT 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 +3 16609519 SNP-3.16608163. A G . . PR;EFF=intron_variant(MODIFIER|||c.1009+59A>G|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|4|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 +3 16612026 SNP-3.16610670. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 +3 16612581 SNP-3.16611225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 +3 16612603 SNP-3.16611247. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 +3 16613494 SNP-3.16612138. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 +3 16614917 SNP-3.16613561. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16626255 SNP-3.16624899. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16626456 SNP-3.16625100. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 +3 16627656 SNP-3.16626300. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16629653 SNP-3.16628297. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcG|p.Ser106Ser/c.318A>G|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|2|1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 +3 16629905 SNP-3.16628549. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acA|p.Thr190Thr/c.570C>A|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|2|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16630371 SNP-3.16629015. A G . . PR;EFF=synonymous_variant(LOW||gGt/gGt|p.Gly315Gly/c.944A>G|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 +3 16630882 SNP-3.16629526. C A . . PR;EFF=intron_variant(MODIFIER|||c.1075-247C>A|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|3|1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 16633913 SNP-3.16632557. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 ./. 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 +3 16635723 SNP-3.16634367. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16636564 SNP-3.16635208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16636964 SNP-3.16635608. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16638512 SNP-3.16637156. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16638642 SNP-3.16637286. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 +3 16639411 SNP-3.16638055. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 16642376 SNP-3.16641020. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 +3 16643300 SNP-3.16641944. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 +3 16643982 SNP-3.16642626. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 0/1 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 16646620 SNP-3.16645264. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 16647194 SNP-3.16645838. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 +3 16647665 SNP-3.16646309. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16650006 SNP-3.16648650. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 1/1 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 +3 16650432 SNP-3.16649076. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 +3 16652819 SNP-3.16651463. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 +3 16654501 SNP-3.16653145. C A . . PR;EFF=intron_variant(MODIFIER|||c.-1+31C>A|226|LOC_Os03g29260|protein_coding|CODING|LOC_Os03g29260.2|1|1) GT 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 16655352 SNP-3.16653996. C A . . PR;EFF=intron_variant(MODIFIER|||c.87-15C>A|226|LOC_Os03g29260|protein_coding|CODING|LOC_Os03g29260.2|2|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 16659023 SNP-3.16657667. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 +3 16659994 SNP-3.16658638. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 +3 16661316 SNP-3.16659960. A G . . PR;EFF=intron_variant(MODIFIER|||c.838-331T>C|355|LOC_Os03g29270|protein_coding|CODING|LOC_Os03g29270.1|3|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 +3 16662852 SNP-3.16661496. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcC|p.Ser11Ser/c.33T>C|355|LOC_Os03g29270|protein_coding|CODING|LOC_Os03g29270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 +3 16668298 SNP-3.16666942. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 16670653 SNP-3.16669297. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16671466 SNP-3.16670110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 16671695 SNP-3.16670339. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 ./. ./. ./. 0/1 1/1 1/1 ./. ./. ./. ./. ./. 0/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. +3 16679391 SNP-3.16678035. C A . . PR;EFF=synonymous_variant(LOW||cTc/cTc|p.Leu154Leu/c.461G>T|911|LOC_Os03g29290|protein_coding|CODING|LOC_Os03g29290.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16682908 SNP-3.16681552. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcG/tcC|p.Ser512Ser/c.1536T>C|859|LOC_Os03g29310|protein_coding|CODING|LOC_Os03g29310.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 +3 16685894 SNP-3.16684538. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 16685989 SNP-3.16684633. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. +3 16688049 SNP-3.16686693. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 16688126 SNP-3.16686770. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16692659 SNP-3.16691304. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||395|c.-75C>A|463|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||395|c.-155C>A|449|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 16694934 SNP-3.16693579. A G . . PR;EFF=intron_variant(MODIFIER|||c.585-112A>G|449|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.2|6|1),intron_variant(MODIFIER|||c.594-79A>G|463|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.1|6|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 +3 16705256 SNP-3.16703901. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16705740 SNP-3.16704385. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16705901 SNP-3.16704546. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 ./. ./. 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 +3 16708508 SNP-3.16707153. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16709942 SNP-3.16708587. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 +3 16711077 SNP-3.16709722. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/1 ./. 0/0 0/1 1/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 +3 16711383 SNP-3.16710028. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 +3 16712609 SNP-3.16711254. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 +3 16713722 SNP-3.16712367. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 +3 16713855 SNP-3.16712500. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16713877 SNP-3.16712522. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 +3 16717631 SNP-3.16716276. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16718155 SNP-3.16716800. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16719368 SNP-3.16718013. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16724730 SNP-3.16723375. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 +3 16726214 SNP-3.16724859. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. +3 16726980 SNP-3.16725625. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 +3 16733773 SNP-3.16732418. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 +3 16736480 SNP-3.16735125. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. ./. 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 +3 16737323 SNP-3.16735968. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 +3 16738150 SNP-3.16736795. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 +3 16738536 SNP-3.16737181. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 +3 16739478 SNP-3.16738123. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16740928 SNP-3.16739573. A G . . PR;EFF=intron_variant(MODIFIER|||c.97+52T>C|107|LOC_Os03g29389|protein_coding|CODING|LOC_Os03g29389.1|1|1) GT ./. 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 +3 16741152 SNP-3.16739797. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 +3 16741191 SNP-3.16739836. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 +3 16742631 SNP-3.16741276. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 +3 16745344 SNP-3.16743989. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 16746102 SNP-3.16744747. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 +3 16747632 SNP-3.16746277. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 16749510 SNP-3.16748155. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGc/tTc|p.Cys500Phe/c.1499G>T|500|LOC_Os03g29410|protein_coding|CODING|LOC_Os03g29410.1|5|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16749956 SNP-3.16748601. C A . . PR;EFF=synonymous_variant(LOW||gcT/gcT|p.Ala351Ala/c.1053G>T|500|LOC_Os03g29410|protein_coding|CODING|LOC_Os03g29410.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 16753383 SNP-3.16752028. C A . . PR;EFF=intron_variant(MODIFIER|||c.583-20G>T|500|LOC_Os03g29410|protein_coding|CODING|LOC_Os03g29410.1|1|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16754512 SNP-3.16753157. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 +3 16757648 SNP-3.16756293. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16760451 SNP-3.16759096. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 ./. ./. 0/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16763096 SNP-3.16761741. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 0/1 1/1 ./. 0/1 0/1 0/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 +3 16766719 SNP-3.16765364. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 +3 16775485 SNP-3.16774358. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 16777112 SNP-3.16775985. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 +3 16777397 SNP-3.16776270. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 16777506 SNP-3.16776379. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16777607 SNP-3.16776480. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 16779274 SNP-3.16778147. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tGt|p.Phe102Cys/c.305A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 +3 16779316 SNP-3.16778189. A G . . PR;EFF=synonymous_variant(LOW||cGg/cGg|p.Arg116Arg/c.347A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16779367 SNP-3.16778240. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tGt|p.Phe133Cys/c.398A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 +3 16779761 SNP-3.16778634. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caG|p.His228Gln/c.684A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 +3 16779862 SNP-3.16778735. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile262Lys/c.785C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16780004 SNP-3.16778877. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaG|p.Asn309Lys/c.927A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16780112 SNP-3.16778985. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys345Trp/c.1035A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16780429 SNP-3.16779302. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cGa|p.Pro403Arg/c.1208A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 16780471 SNP-3.16779344. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aAg|p.Thr417Lys/c.1250C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 +3 16780558 SNP-3.16779431. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aGa|p.Thr446Arg/c.1337A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 +3 16780639 SNP-3.16779512. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met473Arg/c.1418A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16780671 SNP-3.16779544. C A . . PR;EFF=synonymous_variant(LOW||Agg/Agg|p.Arg484Arg/c.1450C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16780741 SNP-3.16779614. A G . . PR;EFF=synonymous_variant(LOW||tGg/tGg|p.Trp507Trp/c.1520A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. +3 16780915 SNP-3.16779788. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTa/cAa|p.Leu565Gln/c.1694C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 +3 16781002 SNP-3.16779875. A G . . PR;EFF=synonymous_variant(LOW||cGg/cGg|p.Arg594Arg/c.1781A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16781077 SNP-3.16779950. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aGa|p.Thr619Arg/c.1856A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16781257 SNP-3.16780130. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gGa|p.Val679Gly/c.2036A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16781605 SNP-3.16780478. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAa/gGa|p.Glu795Gly/c.2384A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 16784936 SNP-3.16783809. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 16789370 SNP-3.16788243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 +3 16791091 SNP-3.16789964. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 +3 16791407 SNP-3.16790280. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16793197 SNP-3.16792070. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16796885 SNP-3.16795758. A G . . PR;EFF=intron_variant(MODIFIER|||c.340-1744A>G|224|LOC_Os03g29470|protein_coding|CODING|LOC_Os03g29470.1|1|1) GT 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16798362 SNP-3.16797235. A G . . PR;EFF=intron_variant(MODIFIER|||c.340-267A>G|224|LOC_Os03g29470|protein_coding|CODING|LOC_Os03g29470.1|1|1) GT 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 +3 16801060 SNP-3.16799933. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 +3 16807398 SNP-3.16806271. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 16807958 SNP-3.16806831. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 16811339 SNP-3.16810212. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttt/Gtt|p.Phe72Val/c.214A>G|128|LOC_Os03g29490|protein_coding|CODING|LOC_Os03g29490.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16817640 SNP-3.16816513. A G . . PR;EFF=intron_variant(MODIFIER|||c.58+273T>C|99|LOC_Os03g29510|protein_coding|CODING|LOC_Os03g29510.1|1|1) GT 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 16817724 SNP-3.16816597. A G . . PR;EFF=intron_variant(MODIFIER|||c.58+189T>C|99|LOC_Os03g29510|protein_coding|CODING|LOC_Os03g29510.1|1|1) GT 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 +3 16818214 SNP-3.16817087. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16820497 SNP-3.16819370. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16820716 SNP-3.16819589. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16820765 SNP-3.16819638. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. +3 16822183 SNP-3.16821056. C A . . PR;EFF=synonymous_variant(LOW||atT/atT|p.Ile1492Ile/c.4476G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 +3 16822258 SNP-3.16821131. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|agA/agT|p.Arg1467Ser/c.4401G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16822481 SNP-3.16821354. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAc/gCc|p.Asp1393Ala/c.4178T>C|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 16822667 SNP-3.16821540. A G . . PR;EFF=intron_variant(MODIFIER|||c.4124-132T>C|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|9|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16824914 SNP-3.16823787. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His1152Leu/c.3455G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 +3 16826960 SNP-3.16825833. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gCt|p.Val673Ala/c.2018T>C|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. +3 16827601 SNP-3.16826474. C A . . PR;EFF=synonymous_variant(LOW||gaT/gaT|p.Asp509Asp/c.1527G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 16830403 SNP-3.16829276. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 +3 16833880 SNP-3.16832753. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 0/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/1 ./. 0/1 ./. 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. +3 16834732 SNP-3.16833605. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 1/1 0/1 ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. ./. ./. ./. 0/1 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 +3 16834840 SNP-3.16833713. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16838056 SNP-3.16836929. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||76|c.-76T>C|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.-49-27T>C|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.1|1|1),intron_variant(MODIFIER|||c.-49-27T>C|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.3|1|1) GT ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 +3 16840375 SNP-3.16839248. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||2395|c.-2395G>T|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.-50+202G>T|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.3|1|1) GT ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 +3 16841473 SNP-3.16840346. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGt/tCt|p.Cys240Ser/c.719T>C|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 +3 16841580 SNP-3.16840453. C A . . PR;EFF=intron_variant(MODIFIER|||c.677-65G>T|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|2|1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 16842371 SNP-3.16841244. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Cgt|p.Gly135Arg/c.403T>C|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 +3 16842419 SNP-3.16841292. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gta/Tta|p.Val119Leu/c.355G>T|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|1|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16842546 SNP-3.16841419. A G . . PR;EFF=synonymous_variant(LOW||gaC/gaC|p.Asp76Asp/c.228T>C|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 +3 16842798 SNP-3.16841671. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 16843300 SNP-3.16842173. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 +3 16855971 SNP-3.16854844. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 1/1 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 1/1 +3 16856289 SNP-3.16855162. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16856475 SNP-3.16855348. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. 0/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16861320 SNP-3.16860193. C A . . PR;EFF=intron_variant(MODIFIER|||c.184+254G>T|217|LOC_Os03g29570|protein_coding|CODING|LOC_Os03g29570.1|3|1) GT 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 16861617 SNP-3.16860490. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgT/cgC|p.Arg47Arg/c.141T>C|217|LOC_Os03g29570|protein_coding|CODING|LOC_Os03g29570.1|3|1) GT 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 +3 16861796 SNP-3.16860669. C A . . PR;EFF=intron_variant(MODIFIER|||c.76-114G>T|217|LOC_Os03g29570|protein_coding|CODING|LOC_Os03g29570.1|2|1) GT ./. 0/0 ./. ./. 1/1 ./. 0/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 +3 16864273 SNP-3.16863146. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu113Leu/c.339A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16865191 SNP-3.16864064. A G . . PR;EFF=intron_variant(MODIFIER|||c.717+111A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16865836 SNP-3.16864709. C A . . PR;EFF=intron_variant(MODIFIER|||c.718-58C>A|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|2|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16866568 SNP-3.16865441. A G . . PR;EFF=intron_variant(MODIFIER|||c.846+546A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|3|1) GT 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 +3 16867052 SNP-3.16865925. A G . . PR;EFF=intron_variant(MODIFIER|||c.847-413A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 0/1 ./. ./. 0/1 0/1 0/1 ./. ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 ./. 0/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/1 ./. ./. ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 16867616 SNP-3.16866489. A G . . PR;EFF=intron_variant(MODIFIER|||c.915+83A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 +3 16867809 SNP-3.16866682. A G . . PR;EFF=intron_variant(MODIFIER|||c.915+276A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|4|1) GT 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 +3 16868418 SNP-3.16867291. A G . . PR;EFF=intron_variant(MODIFIER|||c.1116+49A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|5|1) GT 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 16868554 SNP-3.16867427. C A . . PR;EFF=intron_variant(MODIFIER|||c.1116+185C>A|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|5|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. +3 16869013 SNP-3.16867886. A G . . PR;EFF=synonymous_variant(LOW||Gtt/Gtt|p.Val391Val/c.1171A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16869049 SNP-3.16867922. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16869162 SNP-3.16868035. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 16869256 SNP-3.16868129. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 +3 16869645 SNP-3.16868518. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/0 +3 16873120 SNP-3.16871993. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16873753 SNP-3.16872626. A G . . PR;EFF=synonymous_variant(LOW||gGg/gGg|p.Gly5Gly/c.14A>G|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 16874793 SNP-3.16873666. C A . . PR;EFF=intron_variant(MODIFIER|||c.844-26C>A|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|3|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 16874827 SNP-3.16873700. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccT/ccA|p.Pro284Pro/c.852C>A|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16875286 SNP-3.16874159. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu405Leu/c.1215A>G|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16876042 SNP-3.16874915. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro526Pro/c.1578A>G|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 0/1 0/1 ./. 1/1 ./. 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 +3 16876766 SNP-3.16875639. C A . . PR;EFF=synonymous_variant(LOW||Aca/Aca|p.Thr729Thr/c.2185C>A|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16877583 SNP-3.16876456. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 16878653 SNP-3.16877526. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16879736 SNP-3.16878609. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||54|c.*54G>T|321|LOC_Os03g29614|protein_coding|CODING|LOC_Os03g29614.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16881068 SNP-3.16879941. C A . . PR;EFF=intron_variant(MODIFIER|||c.264-576G>T|321|LOC_Os03g29614|protein_coding|CODING|LOC_Os03g29614.1|2|1) GT 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 16882354 SNP-3.16881227. A G . . PR;EFF=intron_variant(MODIFIER|||c.263+861T>C|321|LOC_Os03g29614|protein_coding|CODING|LOC_Os03g29614.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 1/1 0/0 0/1 0/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/1 ./. ./. 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 +3 16884674 SNP-3.16883547. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 +3 16885632 SNP-3.16884505. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 16887221 SNP-3.16886094. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16887442 SNP-3.16886315. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 +3 16887944 SNP-3.16886817. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 16894190 SNP-3.16893063. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 16894727 SNP-3.16893600. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 16901615 SNP-3.16900488. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 +3 16906662 SNP-3.16905535. A G . . PR;EFF=intron_variant(MODIFIER|||c.2082+215A>G|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|4|1) GT 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 +3 16907231 SNP-3.16906104. C A . . PR;EFF=synonymous_variant(LOW||gcA/gcA|p.Ala742Ala/c.2226C>A|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16907925 SNP-3.16906798. A G . . PR;EFF=intron_variant(MODIFIER|||c.2791-60A>G|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|5|1) GT 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 +3 16908677 SNP-3.16907550. C A . . PR;EFF=synonymous_variant(LOW|SILENT|cgC/cgA|p.Arg1161Arg/c.3483C>A|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|6|1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 16908694 SNP-3.16907567. A G . . PR;EFF=synonymous_variant(LOW||gGa/gGa|p.Gly1167Gly/c.3500A>G|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. +3 16911094 SNP-3.16909967. C A . . PR;EFF=synonymous_variant(LOW||ctT/ctT|p.Leu661Leu/c.1983G>T|823|LOC_Os03g29660|protein_coding|CODING|LOC_Os03g29660.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 +3 16912862 SNP-3.16911735. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcA/gcC|p.Ala198Ala/c.594T>C|823|LOC_Os03g29660|protein_coding|CODING|LOC_Os03g29660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 +3 16913768 SNP-3.16912641. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. +3 16913889 SNP-3.16912762. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 +3 16916409 SNP-3.16915282. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16918539 SNP-3.16917412. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 +3 16922757 SNP-3.16921630. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/1 1/1 0/0 0/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 0/1 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 ./. 0/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/1 +3 16922834 SNP-3.16921707. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16925079 SNP-3.16923952. A G . . PR;EFF=intron_variant(MODIFIER|||c.336+42T>C|195|LOC_Os03g29690|protein_coding|CODING|LOC_Os03g29690.1|1|1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16926996 SNP-3.16925869. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 0/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16928902 SNP-3.16927775. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16931092 SNP-3.16929965. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 16931262 SNP-3.16930135. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16936518 SNP-3.16935391. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16936542 SNP-3.16935415. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 16936990 SNP-3.16935863. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16941790 SNP-3.16940663. A G . . PR;EFF=intron_variant(MODIFIER|||c.58+415A>G|80|LOC_Os03g29740|protein_coding|CODING|LOC_Os03g29740.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 16944235 SNP-3.16943108. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. +3 16945031 SNP-3.16943904. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 16946305 SNP-3.16945178. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16946616 SNP-3.16945489. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 16948390 SNP-3.16947263. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 16957271 SNP-3.16956144. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 16958073 SNP-3.16956946. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 16958180 SNP-3.16957053. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 16959242 SNP-3.16958115. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16964467 SNP-3.16963340. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 +3 16965256 SNP-3.16964129. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1674|c.-194C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1674|c.-189C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 +3 16966085 SNP-3.16964958. C A . . PR;EFF=intron_variant(MODIFIER|||c.-42+677C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1),intron_variant(MODIFIER|||c.-37+677C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 16966140 SNP-3.16965013. A G . . PR;EFF=intron_variant(MODIFIER|||c.-42+732A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1),intron_variant(MODIFIER|||c.-37+732A>G|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 +3 16966275 SNP-3.16965148. A G . . PR;EFF=intron_variant(MODIFIER|||c.-41-614A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1),intron_variant(MODIFIER|||c.-36-619A>G|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1) GT 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. +3 16967089 SNP-3.16965962. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu24Leu/c.72C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu24Leu/c.72C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu24Leu/c.72C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16967136 SNP-3.16966009. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp40Gly/c.119A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|3|1),missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp40Gly/c.119A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.2|2|1),missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp40Gly/c.119A>G|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|3|1) GT ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 +3 16968739 SNP-3.16967612. C A . . PR;EFF=intron_variant(MODIFIER|||c.218-129C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|3|1),intron_variant(MODIFIER|||c.218-129C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.2|2|1),intron_variant(MODIFIER|||c.218-144C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|3|1) GT 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 +3 16972073 SNP-3.16970946. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 +3 16972738 SNP-3.16971611. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 +3 16975586 SNP-3.16974459. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcG/tcC|p.Ser9Ser/c.27T>C|158|LOC_Os03g29770|protein_coding|CODING|LOC_Os03g29770.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/0 1/1 +3 16976297 SNP-3.16975170. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 +3 16976839 SNP-3.16975712. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 16978308 SNP-3.16977181. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/1 0/1 ./. ./. 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 16978380 SNP-3.16977253. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 +3 16991576 SNP-3.16990449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16993049 SNP-3.16991922. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 16993369 SNP-3.16992242. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 +3 16994927 SNP-3.16993800. A G . . PR;EFF=intron_variant(MODIFIER|||c.104-312A>G|259|LOC_Os03g29810|protein_coding|CODING|LOC_Os03g29810.1|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 16998202 SNP-3.16997075. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 17000857 SNP-3.16999730. A G . . PR;EFF=synonymous_variant(LOW||Gaa/Gaa|p.Glu97Glu/c.289A>G|178|LOC_Os03g29830|protein_coding|CODING|LOC_Os03g29830.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17003965 SNP-3.17002838. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 +3 17006312 SNP-3.17005185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17006838 SNP-3.17005711. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 ./. 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. ./. ./. 1/1 0/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. +3 17006865 SNP-3.17005738. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 17006874 SNP-3.17005747. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 17011979 SNP-3.17010852. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 +3 17012377 SNP-3.17011250. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17013438 SNP-3.17012311. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17013512 SNP-3.17012385. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 17013703 SNP-3.17012576. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 +3 17015006 SNP-3.17013879. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gat/Cat|p.Asp1295His/c.3883T>C|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 +3 17019074 SNP-3.17017947. A G . . PR;EFF=intron_variant(MODIFIER|||c.1337-97T>C|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|4|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 +3 17019476 SNP-3.17018349. A G . . PR;EFF=intron_variant(MODIFIER|||c.1336+211T>C|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|4|1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 17020461 SNP-3.17019334. C A . . PR;EFF=intron_variant(MODIFIER|||c.1231+37G>T|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|2|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17022129 SNP-3.17021002. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaA/gaT|p.Glu148Asp/c.444G>T|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17023931 SNP-3.17022804. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/1 ./. 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/1 1/1 ./. ./. 0/1 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 0/1 +3 17027034 SNP-3.17025907. A G . . PR;EFF=synonymous_variant(LOW||cCg/cCg|p.Pro477Pro/c.1430T>C|962|LOC_Os03g29880|protein_coding|CODING|LOC_Os03g29880.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 ./. 0/1 ./. 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. +3 17032121 SNP-3.17030994. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Cgt|p.Gly597Arg/c.1789T>C|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. +3 17032918 SNP-3.17031791. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cTt|p.Arg331Leu/c.992G>T|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|4|1) GT ./. 0/0 ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17034429 SNP-3.17033302. A G . . PR;EFF=intron_variant(MODIFIER|||c.207+280T>C|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|2|1) GT 1/1 0/1 ./. 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17035092 SNP-3.17033965. C A . . PR;EFF=intron_variant(MODIFIER|||c.98+37G>T|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|1|1) GT 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17035251 SNP-3.17034124. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 17035826 SNP-3.17034699. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17035928 SNP-3.17034801. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17036502 SNP-3.17035375. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17036731 SNP-3.17035604. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 ./. 0/1 0/0 1/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 ./. ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/1 0/1 ./. 0/1 0/1 0/1 0/0 0/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 +3 17037461 SNP-3.17036334. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17039258 SNP-3.17038131. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17041239 SNP-3.17040112. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1650|c.-1650C>A|119|LOC_Os03g29910|protein_coding|CODING|LOC_Os03g29910.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.64+1601C>A|131|LOC_Os03g29910|protein_coding|CODING|LOC_Os03g29910.1|1|1) GT 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17046414 SNP-3.17045287. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. +3 17056800 SNP-3.17055613ct. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 +3 17057151 SNP-3.17055964. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17057230 SNP-3.17056043. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 +3 17059410 SNP-3.17058223. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17061585 SNP-3.17060398. A G . . PR;EFF=splice_region_variant(LOW|||c.173A>G|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|1|1),intron_variant(MODIFIER|||c.173-3A>G|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|1|1) GT 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/0 0/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/1 0/1 1/1 0/0 1/1 +3 17062268 SNP-3.17061081. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu264Met/c.790C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17064370 SNP-3.17063183. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys733Lys/c.2197C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17064446 SNP-3.17063259. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His758His/c.2273C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17064447 SNP-3.17063260. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caT/caA|p.His758Gln/c.2274C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17064676 SNP-3.17063489. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctt/Att|p.Leu835Ile/c.2503C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17064954 SNP-3.17063767. C A . . PR;EFF=intron_variant(MODIFIER|||c.2577+204C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17065946 SNP-3.17064759. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaC/aaA|p.Asn995Lys/c.2985C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|11|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 +3 17066399 SNP-3.17065212. A G . . PR;EFF=intron_variant(MODIFIER|||c.3362-21A>G|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|11|1) GT 1/1 0/0 ./. 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 17067493 SNP-3.17066306. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17069149 SNP-3.17067962. C A . . PR;EFF=intron_variant(MODIFIER|||c.555+155C>A|577|LOC_Os03g29950|protein_coding|CODING|LOC_Os03g29950.1|4|1),intron_variant(MODIFIER|||c.177+155C>A|451|LOC_Os03g29950|protein_coding|CODING|LOC_Os03g29950.2|4|1) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17073834 SNP-3.17072647. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 +3 17074874 SNP-3.17073687. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17076813 SNP-3.17075626. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17079019 SNP-3.17077832. A G . . PR;EFF=intron_variant(MODIFIER|||c.100-9A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17080712 SNP-3.17079525. A G . . PR;EFF=synonymous_variant(LOW||atG/atG|p.Met208Met/c.624A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17080998 SNP-3.17079811. A G . . PR;EFF=synonymous_variant(LOW||Gtt/Gtt|p.Val304Val/c.910A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/1 +3 17082728 SNP-3.17081541. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taC/taG|p.Tyr342*/c.1026A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g29960|LOC_Os03g29960|1|1.00);NMD=(LOC_Os03g29960|LOC_Os03g29960|1|1.00) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17083355 SNP-3.17082168. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala450Gly/c.1349A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 +3 17084496 SNP-3.17083309. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 +3 17084825 SNP-3.17083638. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17085178 SNP-3.17083991. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 17086489 SNP-3.17085302. C A . . PR;EFF=intron_variant(MODIFIER|||c.637+465C>A|225|LOC_Os03g29970|protein_coding|CODING|LOC_Os03g29970.1|1|1) GT 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17086506 SNP-3.17085319. A G . . PR;EFF=intron_variant(MODIFIER|||c.637+482A>G|225|LOC_Os03g29970|protein_coding|CODING|LOC_Os03g29970.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 +3 17089448 SNP-3.17088261. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/1 +3 17089753 SNP-3.17088566. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17090397 SNP-3.17089210. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 +3 17090472 SNP-3.17089285. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17090776 SNP-3.17089589. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17092256 SNP-3.17091069. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||1130|c.-310A>G|374|LOC_Os03g29980|protein_coding|CODING|LOC_Os03g29980.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 17092943 SNP-3.17091756. A G . . PR;EFF=intron_variant(MODIFIER|||c.-221+9A>G|374|LOC_Os03g29980|protein_coding|CODING|LOC_Os03g29980.2|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17097439 SNP-3.17096252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 +3 17098846 SNP-3.17097659. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17099351 SNP-3.17098164. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17099628 SNP-3.17098441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17100185 SNP-3.17098998. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. +3 17100860 SNP-3.17099673. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17101619 SNP-3.17100432. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17102747 SNP-3.17101560. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17103110 SNP-3.17101923. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/1 ./. ./. 0/1 0/0 ./. 0/1 0/1 0/0 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/1 0/0 ./. ./. 0/1 1/1 0/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/0 ./. ./. 1/1 0/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 ./. 0/0 1/1 +3 17106949 SNP-3.17105762. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17107044 SNP-3.17105857. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17107091 SNP-3.17105904. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17107615 SNP-3.17106428. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17113483 SNP-3.17112296. A G . . PR;EFF=intron_variant(MODIFIER|||c.-2-23T>C|541|LOC_Os03g30000|protein_coding|CODING|LOC_Os03g30000.1|1|1) GT ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. +3 17114176 SNP-3.17112989. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17114400 SNP-3.17113213. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17116915 SNP-3.17115728. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 17117693 SNP-3.17116506. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/1 +3 17118886 SNP-3.17117699. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17120131 SNP-3.17118944. A G . . PR;EFF=intron_variant(MODIFIER|||c.87+389T>C|113|LOC_Os03g30010|protein_coding|CODING|LOC_Os03g30010.1|2|1) GT 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17120266 SNP-3.17119079. A G . . PR;EFF=intron_variant(MODIFIER|||c.87+254T>C|113|LOC_Os03g30010|protein_coding|CODING|LOC_Os03g30010.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17120722 SNP-3.17119535. C A . . PR;EFF=intron_variant(MODIFIER|||c.34-149G>T|113|LOC_Os03g30010|protein_coding|CODING|LOC_Os03g30010.1|1|1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17123162 SNP-3.17121975. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 +3 17123460 SNP-3.17122273. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 0/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 17123994 SNP-3.17122807. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17126152 SNP-3.17124965. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17126775 SNP-3.17125588. A G . . PR;EFF=intron_variant(MODIFIER|||c.177+173A>G|65|LOC_Os03g30020|protein_coding|CODING|LOC_Os03g30020.1|1|1) GT 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17127527 SNP-3.17126340. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17128413 SNP-3.17127226. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/1 +3 17129150 SNP-3.17127963. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17129302 SNP-3.17128115. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17130280 SNP-3.17129093. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17131818 SNP-3.17130631. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/1 +3 17131858 SNP-3.17130671. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17132905 SNP-3.17131718. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 17133832 SNP-3.17132645. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17134497 SNP-3.17133310. A G . . PR;EFF=synonymous_variant(LOW||gCt/gCt|p.Ala464Ala/c.1391T>C|504|LOC_Os03g30030|protein_coding|CODING|LOC_Os03g30030.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17137062 SNP-3.17135875. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 +3 17138730 SNP-3.17137543. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 +3 17140286 SNP-3.17139099. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17140784 SNP-3.17139597. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 17143836 SNP-3.17142649. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAc/aTc|p.Asn155Ile/c.464G>T|361|LOC_Os03g30060|protein_coding|CODING|LOC_Os03g30060.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17158273 SNP-3.17157082. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 17162405 SNP-3.17161214. C A . . PR;EFF=intron_variant(MODIFIER|||c.307-167G>T|193|LOC_Os03g30088|protein_coding|CODING|LOC_Os03g30088.1|2|1) GT 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17162768 SNP-3.17161577. C A . . PR;EFF=synonymous_variant(LOW||Ttg/Ttg|p.Leu63Leu/c.187G>T|193|LOC_Os03g30088|protein_coding|CODING|LOC_Os03g30088.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 +3 17165364 SNP-3.17164173. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17167703 SNP-3.17166512. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 +3 17168660 SNP-3.17167469. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17170058 SNP-3.17168867. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 +3 17171398 SNP-3.17170207. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17175832 SNP-3.17174641. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17177886 SNP-3.17176695. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17177922 SNP-3.17176731. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17178542 SNP-3.17177351. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17180744 SNP-3.17179553. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met447Arg/c.1340A>G|621|LOC_Os03g30100|protein_coding|CODING|LOC_Os03g30100.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 +3 17180764 SNP-3.17179573. A G . . PR;EFF=synonymous_variant(LOW||Gag/Gag|p.Glu454Glu/c.1360A>G|621|LOC_Os03g30100|protein_coding|CODING|LOC_Os03g30100.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17180994 SNP-3.17179803. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu530Leu/c.1590A>G|621|LOC_Os03g30100|protein_coding|CODING|LOC_Os03g30100.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 +3 17185798 SNP-3.17184607. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr539Ser/c.1615G>T|1727|LOC_Os03g30110|protein_coding|CODING|LOC_Os03g30110.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 +3 17188092 SNP-3.17186901. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGg/gTg|p.Gly59Val/c.176G>T|1727|LOC_Os03g30110|protein_coding|CODING|LOC_Os03g30110.1|1|1) GT ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17190109 SNP-3.17188918. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 17190292 SNP-3.17189101. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 +3 17194160 SNP-3.17192969. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17194174 SNP-3.17192983. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 +3 17197639 SNP-3.17196448. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys62Lys/c.184C>A|263|LOC_Os03g30120|protein_coding|CODING|LOC_Os03g30120.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17198765 SNP-3.17197574. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17199644 SNP-3.17198453. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17199966 SNP-3.17198775. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 17201134 SNP-3.17199943. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17202901 SNP-3.17201710. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17204094 SNP-3.17202903. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17206153 SNP-3.17204962. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17206800 SNP-3.17205609. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 +3 17210461 SNP-3.17209270. C A . . PR;EFF=intron_variant(MODIFIER|||c.-36-41G>T|360|LOC_Os03g30130|protein_coding|CODING|LOC_Os03g30130.1|1|1),intron_variant(MODIFIER|||c.-36-41G>T|360|LOC_Os03g30130|protein_coding|CODING|LOC_Os03g30130.2|1|1),intron_variant(MODIFIER|||c.-36-41G>T|377|LOC_Os03g30130|protein_coding|CODING|LOC_Os03g30130.3|1|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17210715 SNP-3.17209524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17211215 SNP-3.17210024. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17211277 SNP-3.17210086. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 +3 17211985 SNP-3.17210794. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 +3 17213124 SNP-3.17211933. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 +3 17213678 SNP-3.17212487. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aTt|p.Thr228Ile/c.683G>T|277|LOC_Os03g30150|protein_coding|CODING|LOC_Os03g30150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.683G>T|277|LOC_Os03g30150|protein_coding|CODING|LOC_Os03g30150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17217646 SNP-3.17216455. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 +3 17221550 SNP-3.17220359. C A . . PR;EFF=synonymous_variant(LOW||atA/atA|p.Ile657Ile/c.1971C>A|828|LOC_Os03g30170|protein_coding|CODING|LOC_Os03g30170.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 +3 17228574 SNP-3.17227383. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 +3 17229925 SNP-3.17228734. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 +3 17236363 SNP-3.17235172. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/1 ./. 0/0 ./. ./. ./. 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17236799 SNP-3.17235608. A G . . PR;EFF=synonymous_variant(LOW||gcG/gcG|p.Ala37Ala/c.111A>G|208|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gcG/gcG|p.Ala37Ala/c.111A>G|206|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 0/1 0/1 0/1 ./. 0/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 +3 17240709 SNP-3.17239518. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3400|c.*75A>G|206|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||60|c.*60A>G|208|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 +3 17240878 SNP-3.17239687. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3569|c.*244A>G|206|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||229|c.*229A>G|208|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 +3 17248594 SNP-3.17247403. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTc/cAc|p.Leu93His/c.278C>A|335|LOC_Os03g30220|protein_coding|CODING|LOC_Os03g30220.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 17251999 SNP-3.17250808. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17253025 SNP-3.17251834. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 +3 17254178 SNP-3.17252987. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17255297 SNP-3.17254106. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 +3 17257252 SNP-3.17256061. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17257501 SNP-3.17256310. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 +3 17257967 SNP-3.17256776. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. +3 17260017 SNP-3.17258826. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17260323 SNP-3.17259132. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||178|c.-178A>G|468|LOC_Os03g30250|protein_coding|CODING|LOC_Os03g30250.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17261757 SNP-3.17260566. A G . . PR;EFF=intron_variant(MODIFIER|||c.1120+43A>G|468|LOC_Os03g30250|protein_coding|CODING|LOC_Os03g30250.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17264492 SNP-3.17263301. A G . . PR;EFF=intron_variant(MODIFIER|||c.162+101T>C|458|LOC_Os03g30260|protein_coding|CODING|LOC_Os03g30260.1|2|1) GT 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/1 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17265206 SNP-3.17264015. C A . . PR;EFF=intron_variant(MODIFIER|||c.83-534G>T|458|LOC_Os03g30260|protein_coding|CODING|LOC_Os03g30260.1|1|1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17266180 SNP-3.17264989. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||162|c.-162G>T|458|LOC_Os03g30260|protein_coding|CODING|LOC_Os03g30260.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17266653 SNP-3.17265462. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17267380 SNP-3.17266189. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17268078 SNP-3.17266887. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17270402 SNP-3.17269211. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 +3 17272125 SNP-3.17270934. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 17273290 SNP-3.17272099. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17273462 SNP-3.17272271. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 +3 17275994 SNP-3.17274803. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||7|c.-7C>A|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. +3 17276108 SNP-3.17274917. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro36Pro/c.108A>G|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 +3 17276840 SNP-3.17275649. A G . . PR;EFF=intron_variant(MODIFIER|||c.375-233A>G|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|1|1) GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17277250 SNP-3.17276059. A G . . PR;EFF=intron_variant(MODIFIER|||c.480+72A>G|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|2|1) GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 17278027 SNP-3.17276836. C A . . PR;EFF=synonymous_variant(LOW||aAc/aAc|p.Asn247Asn/c.740C>A|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/1 0/1 ./. 0/1 0/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17278691 SNP-3.17277500. A G . . PR;EFF=synonymous_variant(LOW||Cag/Cag|p.Gln144Gln/c.430T>C|171|LOC_Os03g30280|protein_coding|CODING|LOC_Os03g30280.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 17278757 SNP-3.17277566. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Cgt|p.Gly122Arg/c.364T>C|171|LOC_Os03g30280|protein_coding|CODING|LOC_Os03g30280.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17279274 SNP-3.17278083. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17282773 SNP-3.17281582. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 +3 17285432 SNP-3.17284241. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17287490 SNP-3.17286299. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 +3 17294126 SNP-3.17292935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 ./. ./. 0/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 +3 17295161 SNP-3.17293970. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17295666 SNP-3.17294475. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17295669 SNP-3.17294478. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. +3 17297158 SNP-3.17295967. C A . . PR;EFF=intron_variant(MODIFIER|||c.126+81C>A|237|LOC_Os03g30320|protein_coding|CODING|LOC_Os03g30320.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 17299097 SNP-3.17297906. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGg/gAg|p.Gly127Glu/c.380C>A|237|LOC_Os03g30320|protein_coding|CODING|LOC_Os03g30320.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17299249 SNP-3.17298058. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys165Lys/c.493C>A|237|LOC_Os03g30320|protein_coding|CODING|LOC_Os03g30320.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17301282 SNP-3.17300091. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 ./. ./. ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 17301393 SNP-3.17300202. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17302249 SNP-3.17301058. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17302840 SNP-3.17301649. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17302866 SNP-3.17301675. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17307301 SNP-3.17306110. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17308836 SNP-3.17307645. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 17309669 SNP-3.17308478. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp204Gly/c.611A>G|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17309756 SNP-3.17308565. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGg/gAg|p.Gly233Glu/c.698C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17310245 SNP-3.17309054. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Act|p.Ser374Thr/c.1120C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 +3 17310890 SNP-3.17309699. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly494Glu/c.1481C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17311820 SNP-3.17310629. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu789Leu/c.2367C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17312803 SNP-3.17311612. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val34Glu/c.101C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17313282 SNP-3.17312091. A G . . PR;EFF=intron_variant(MODIFIER|||c.525+55A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|1|1) GT 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/1 ./. ./. ./. 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 +3 17315125 SNP-3.17313934. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu345Leu/c.1035A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 +3 17316053 SNP-3.17314862. C A . . PR;EFF=intron_variant(MODIFIER|||c.1305-208C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|4|1) GT 0/0 ./. ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 +3 17316246 SNP-3.17315055. C A . . PR;EFF=intron_variant(MODIFIER|||c.1305-15C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|4|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17316358 SNP-3.17315167. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Ggc|p.Arg468Gly/c.1402A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17316524 SNP-3.17315333. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cGa|p.Pro523Arg/c.1568A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17316583 SNP-3.17315392. A G . . PR;EFF=synonymous_variant(LOW||Ggg/Ggg|p.Gly543Gly/c.1627A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 +3 17316704 SNP-3.17315513. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val583Glu/c.1748C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17316770 SNP-3.17315579. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|tCa/tAa|p.Ser605*/c.1814C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1) GT ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 +3 17316808 SNP-3.17315617. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Act|p.Ala618Thr/c.1852C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/1 1/1 ./. +3 17317090 SNP-3.17315899. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17317120 SNP-3.17315929. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17317156 SNP-3.17315965. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17317611 SNP-3.17316420. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. +3 17323813 SNP-3.17322622. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 +3 17328763 SNP-3.17327572. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/0 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 ./. 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17329992 SNP-3.17328801. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17331753 SNP-3.17330562. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17332696 SNP-3.17331505. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17334445 SNP-3.17333254. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17337378 SNP-3.17336187. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17340602 SNP-3.17339411. A G . . PR;EFF=stop_lost(HIGH|MISSENSE|tgA/tgC|p.Ter516Cysext*?/c.1548T>C|515|LOC_Os03g30420|protein_coding|CODING|LOC_Os03g30420.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 +3 17342404 SNP-3.17341213. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 0/0 ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17343763 SNP-3.17342572. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17344512 SNP-3.17343321. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17349057 SNP-3.17347866. C A . . PR;EFF=intron_variant(MODIFIER|||c.-22-422G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.2|1|1),intron_variant(MODIFIER|||c.-22-422G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.1|1|1) GT 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17349725 SNP-3.17348534. C A . . PR;EFF=intron_variant(MODIFIER|||c.-23+698G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.2|1|1),intron_variant(MODIFIER|||c.-23+703G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.1|1|1) GT ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17350375 SNP-3.17349184. C A . . PR;EFF=intron_variant(MODIFIER|||c.-23+48G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.2|1|1),intron_variant(MODIFIER|||c.-23+53G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.1|1|1) GT 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 17351193 SNP-3.17350002. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17354614 SNP-3.17353423. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. +3 17356355 SNP-3.17355164. A G . . PR;EFF=intron_variant(MODIFIER|||c.280-150T>C|173|LOC_Os03g30440|protein_coding|CODING|LOC_Os03g30440.1|4|1) GT ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17357038 SNP-3.17355847. A G . . PR;EFF=intron_variant(MODIFIER|||c.194-22T>C|173|LOC_Os03g30440|protein_coding|CODING|LOC_Os03g30440.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 +3 17357239 SNP-3.17356048. A G . . PR;EFF=intron_variant(MODIFIER|||c.194-223T>C|173|LOC_Os03g30440|protein_coding|CODING|LOC_Os03g30440.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 +3 17360156 SNP-3.17358965. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 +3 17360361 SNP-3.17359170. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17361360 SNP-3.17360169. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 +3 17363340 SNP-3.17362149. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 0/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 +3 17363396 SNP-3.17362205. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 +3 17363628 SNP-3.17362437. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 +3 17368872 SNP-3.17367681. A G . . PR;EFF=intron_variant(MODIFIER|||c.1423+687T>C|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|3|1) GT 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17370258 SNP-3.17369067. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agg/Tgg|p.Arg242Trp/c.724G>T|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17371659 SNP-3.17370468. C A . . PR;EFF=synonymous_variant(LOW||gTg/gTg|p.Val82Val/c.245G>T|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17371724 SNP-3.17370533. A G . . PR;EFF=intron_variant(MODIFIER|||c.199-19T>C|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|1|1) GT ./. 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17371751 SNP-3.17370560. A G . . PR;EFF=intron_variant(MODIFIER|||c.199-46T>C|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|1|1) GT 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 17373470 SNP-3.17372279. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. +3 17376074 SNP-3.17374883. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17376185 SNP-3.17374994. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 +3 17376429 SNP-3.17375238. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 +3 17381846 SNP-3.17380655. C A . . PR;EFF=intron_variant(MODIFIER|||c.765-145G>T|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|8|1) GT 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 17383050 SNP-3.17381859. A G . . PR;EFF=intron_variant(MODIFIER|||c.672+283T>C|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|7|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17383188 SNP-3.17381997. C A . . PR;EFF=intron_variant(MODIFIER|||c.672+145G>T|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|7|1) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17384655 SNP-3.17383464. C A . . PR;EFF=intron_variant(MODIFIER|||c.448-339G>T|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|5|1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17386362 SNP-3.17385171. A G . . PR;EFF=intron_variant(MODIFIER|||c.165+57T>C|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17390430 SNP-3.17389239. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17391793 SNP-3.17390602. C A . . PR;EFF=synonymous_variant(LOW||gAc/gAc|p.Asp313Asp/c.938C>A|326|LOC_Os03g30470|protein_coding|CODING|LOC_Os03g30470.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17393979 SNP-3.17392788. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17394776 SNP-3.17393585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17397474 SNP-3.17396283. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17399578 SNP-3.17398387. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 +3 17404250 SNP-3.17403059. A G . . PR;EFF=synonymous_variant(LOW||gcG/gcG|p.Ala138Ala/c.414A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 +3 17404496 SNP-3.17403305. A G . . PR;EFF=synonymous_variant(LOW||cgG/cgG|p.Arg220Arg/c.660A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/1 0/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 +3 17404634 SNP-3.17403443. A G . . PR;EFF=synonymous_variant(LOW||aaG/aaG|p.Lys266Lys/c.798A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17404769 SNP-3.17403578. A G . . PR;EFF=synonymous_variant(LOW||aaG/aaG|p.Lys311Lys/c.933A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17405633 SNP-3.17404442. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTa/cAa|p.Leu378Gln/c.1133C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17407227 SNP-3.17406036. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctc/Atc|p.Leu480Ile/c.1438C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|6|1) GT 0/0 ./. 0/1 1/1 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 +3 17407646 SNP-3.17406455. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaG/gaA|p.Glu523Glu/c.1569C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17407766 SNP-3.17406575. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr563Thr/c.1689C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17407784 SNP-3.17406593. C A . . PR;EFF=synonymous_variant(LOW|SILENT|cgT/cgA|p.Arg569Arg/c.1707C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17408862 SNP-3.17407671. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Gat|p.His795Asp/c.2383A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17408911 SNP-3.17407720. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aGg|p.Thr811Arg/c.2432A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17410405 SNP-3.17409214. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||1822|c.*1822T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|2|1),intron_variant(MODIFIER|||c.*824-119T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|2|1) GT 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 +3 17411943 SNP-3.17410752. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||284|c.*284T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||284|c.*284T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 +3 17412479 SNP-3.17411288. C A . . PR;EFF=splice_region_variant(LOW|||c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gcT/gcT|p.Ala150Ala/c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gcT/gcT|p.Ala150Ala/c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 +3 17415865 SNP-3.17414646. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 +3 17419157 SNP-3.17417938. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. +3 17421689 SNP-3.17420470. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17421863 SNP-3.17420644. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17425033 SNP-3.17423814. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val604Ile/c.1810C>A|926|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val603Ile/c.1807C>A|925|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.2|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val603Ile/c.1807C>A|652|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.3|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17425659 SNP-3.17424440. C A . . PR;EFF=intron_variant(MODIFIER|||c.2030-197C>A|926|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.1|4|1),intron_variant(MODIFIER|||c.2027-197C>A|925|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.2|4|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17426889 SNP-3.17425670. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17428070 SNP-3.17426851. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 17428506 SNP-3.17427287. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 +3 17430551 SNP-3.17429332. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17431115 SNP-3.17429896. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17432522 SNP-3.17431303. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 +3 17433999 SNP-3.17432780. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17435638 SNP-3.17434419. C A . . PR;EFF=intron_variant(MODIFIER|||c.-2-123C>A|488|LOC_Os03g30550|protein_coding|CODING|LOC_Os03g30550.1|1|1) GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17436950 SNP-3.17435731. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser268Ser/c.804C>A|488|LOC_Os03g30550|protein_coding|CODING|LOC_Os03g30550.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17439104 SNP-3.17437885. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17442289 SNP-3.17441070. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17443632 SNP-3.17442413. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17447735 SNP-3.17446516. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 +3 17448662 SNP-3.17447443. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17450790 SNP-3.17449571. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.500C>A|234|LOC_Os03g30570|protein_coding|CODING|LOC_Os03g30570.2|2|1),intron_variant(MODIFIER|||c.500-1C>A|234|LOC_Os03g30570|protein_coding|CODING|LOC_Os03g30570.2|1|1),intron_variant(MODIFIER|||c.499+536C>A|307|LOC_Os03g30570|protein_coding|CODING|LOC_Os03g30570.1|1|1);LOF=(LOC_Os03g30570|LOC_Os03g30570|2|0.50) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17455247 SNP-3.17454028. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtG/gtC|p.Val6Val/c.18T>C|108|LOC_Os03g30580|protein_coding|CODING|LOC_Os03g30580.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/1 1/1 0/1 ./. 0/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17456410 SNP-3.17455191. A G . . PR;EFF=intron_variant(MODIFIER|||c.-19+154T>C|108|LOC_Os03g30580|protein_coding|CODING|LOC_Os03g30580.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17457271 SNP-3.17456052. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17461457 SNP-3.17460238. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|agC/agG|p.Ser54Arg/c.162A>G|239|LOC_Os03g30600|protein_coding|CODING|LOC_Os03g30600.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. +3 17461629 SNP-3.17460410. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu112Met/c.334C>A|239|LOC_Os03g30600|protein_coding|CODING|LOC_Os03g30600.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17461871 SNP-3.17460652. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcG/gcA|p.Ala192Ala/c.576C>A|239|LOC_Os03g30600|protein_coding|CODING|LOC_Os03g30600.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 0/0 +3 17462093 SNP-3.17460874. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17462213 SNP-3.17460994. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17462855 SNP-3.17461636. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17464258 SNP-3.17463039. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17465300 SNP-3.17464081. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17466511 SNP-3.17465292. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcT|p.Ser260Ser/c.780G>T|314|LOC_Os03g30620|protein_coding|CODING|LOC_Os03g30620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17466634 SNP-3.17465415. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaG/aaT|p.Lys219Asn/c.657G>T|314|LOC_Os03g30620|protein_coding|CODING|LOC_Os03g30620.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 +3 17467370 SNP-3.17466151. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. +3 17467718 SNP-3.17466499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17467753 SNP-3.17466534. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17468835 SNP-3.17467616. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 17474014 SNP-3.17472795. C A . . PR;EFF=intron_variant(MODIFIER|||c.548+325G>T|199|LOC_Os03g30650|protein_coding|CODING|LOC_Os03g30650.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17476491 SNP-3.17475272. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17480016 SNP-3.17478797. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 +3 17488862 SNP-3.17487643. A G . . PR;EFF=intron_variant(MODIFIER|||c.56-494A>G|409|LOC_Os03g30700|protein_coding|CODING|LOC_Os03g30700.1|1|1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 +3 17489382 SNP-3.17488163. C A . . PR;EFF=synonymous_variant(LOW||Acc/Acc|p.Thr28Thr/c.82C>A|409|LOC_Os03g30700|protein_coding|CODING|LOC_Os03g30700.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17489992 SNP-3.17488773. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met231Arg/c.692A>G|409|LOC_Os03g30700|protein_coding|CODING|LOC_Os03g30700.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 +3 17493182 SNP-3.17491963. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 +3 17493629 SNP-3.17492410. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17493657 SNP-3.17492438. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17506280 SNP-3.17505061. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17506439 SNP-3.17505220. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17506741 SNP-3.17505522. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. ./. 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/1 0/0 1/1 +3 17507104 SNP-3.17505885. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 +3 17508035 SNP-3.17506816. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17508310 SNP-3.17507091. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gGt|p.Ala7Gly/c.20A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17508325 SNP-3.17507106. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cAc|p.Arg12His/c.35C>A|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 +3 17509187 SNP-3.17507968. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu263Leu/c.789C>A|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17509214 SNP-3.17507995. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caG|p.His272Gln/c.816A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 +3 17509298 SNP-3.17508079. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp300Glu/c.900A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17509481 SNP-3.17508262. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys361Trp/c.1083A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17511061 SNP-3.17509842. C A . . PR;EFF=intron_variant(MODIFIER|||c.280-39C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17511335 SNP-3.17510116. C A . . PR;EFF=intron_variant(MODIFIER|||c.395+120C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|3|1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 17511446 SNP-3.17510227. C A . . PR;EFF=intron_variant(MODIFIER|||c.396-30C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|3|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 17511694 SNP-3.17510475. C A . . PR;EFF=intron_variant(MODIFIER|||c.545+69C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|4|1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/1 0/0 ./. 0/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 0/0 +3 17512310 SNP-3.17511091. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys232Lys/c.696C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17512568 SNP-3.17511349. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17519704 SNP-3.17518485. A G . . PR;EFF=splice_region_variant(LOW|||c.599T>C|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|4|1),intron_variant(MODIFIER|||c.598+7T>C|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17520597 SNP-3.17519378. A G . . PR;EFF=intron_variant(MODIFIER|||c.125+39T>C|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|2|1) GT 0/0 0/0 0/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 +3 17520692 SNP-3.17519473. C A . . PR;EFF=synonymous_variant(LOW|SILENT|agC/agT|p.Ser23Ser/c.69G>T|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/1 0/0 0/1 ./. ./. 0/0 0/1 ./. ./. 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 0/0 +3 17522136 SNP-3.17520917. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cAa|p.Pro72Gln/c.215C>A|92|LOC_Os03g30744|protein_coding|CODING|LOC_Os03g30744.1|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17523387 SNP-3.17522168. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17524099 SNP-3.17522880. A G . . PR;EFF=intron_variant(MODIFIER|||c.148-220T>C|88|LOC_Os03g30750|protein_coding|CODING|LOC_Os03g30750.1|2|1) GT 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17524982 SNP-3.17523763. C A . . PR;EFF=intron_variant(MODIFIER|||c.147+516G>T|88|LOC_Os03g30750|protein_coding|CODING|LOC_Os03g30750.1|2|1) GT 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 17527062 SNP-3.17525843. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 17527717 SNP-3.17526498. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 +3 17528096 SNP-3.17526877. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17529059 SNP-3.17527840. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 +3 17532885 SNP-3.17531666. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/1 0/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 0/1 0/1 ./. 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17533563 SNP-3.17532344. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 ./. ./. ./. 1/1 0/1 0/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 +3 17534470 SNP-3.17533251. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17535552 SNP-3.17534333. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gCt|p.Asp225Ala/c.674T>C|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17535974 SNP-3.17534755. C A . . PR;EFF=synonymous_variant(LOW||ccT/ccT|p.Pro84Pro/c.252G>T|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17537337 SNP-3.17536118. A G . . PR;EFF=intron_variant(MODIFIER|||c.24+617T>C|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17537864 SNP-3.17536645. C A . . PR;EFF=intron_variant(MODIFIER|||c.24+90G>T|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17539868 SNP-3.17538649. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17544513 SNP-3.17543294. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 +3 17548078 SNP-3.17546859. C A . . PR;EFF=start_lost(HIGH|MISSENSE|aTg/aAg|p.Met1?/c.2C>A|135|LOC_Os03g30770|protein_coding|CODING|LOC_Os03g30770.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g30770|LOC_Os03g30770|1|1.00) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17548141 SNP-3.17546922. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro22Arg/c.65A>G|135|LOC_Os03g30770|protein_coding|CODING|LOC_Os03g30770.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17549444 SNP-3.17548225. C A . . PR;EFF=synonymous_variant(LOW||gAg/gAg|p.Glu108Glu/c.323C>A|137|LOC_Os03g30780|protein_coding|CODING|LOC_Os03g30780.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17552952 SNP-3.17551733. A G . . PR;EFF=intron_variant(MODIFIER|||c.573+23T>C|374|LOC_Os03g30790|protein_coding|CODING|LOC_Os03g30790.1|5|1) GT 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. +3 17554980 SNP-3.17553761. C A . . PR;EFF=intron_variant(MODIFIER|||c.184-884G>T|374|LOC_Os03g30790|protein_coding|CODING|LOC_Os03g30790.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17559872 SNP-3.17558653. A G . . PR;EFF=intron_variant(MODIFIER|||c.293-183A>G|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|2|1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 +3 17560581 SNP-3.17559362. A G . . PR;EFF=intron_variant(MODIFIER|||c.346-59A>G|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|3|1) GT ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 17561005 SNP-3.17559786. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu237Leu/c.711C>A|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 17561063 SNP-3.17559844. A G . . PR;EFF=synonymous_variant(LOW||Gag/Gag|p.Glu257Glu/c.769A>G|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17561435 SNP-3.17560216. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17561589 SNP-3.17560370. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 +3 17561662 SNP-3.17560443. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 17562785 SNP-3.17561566. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aat/Tat|p.Asn830Tyr/c.2488G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17562831 SNP-3.17561612. C A . . PR;EFF=synonymous_variant(LOW||taT/taT|p.Tyr814Tyr/c.2442G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17562934 SNP-3.17561715. A G . . PR;EFF=synonymous_variant(LOW||gCg/gCg|p.Ala780Ala/c.2339T>C|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17563063 SNP-3.17561844. C A . . PR;EFF=intron_variant(MODIFIER|||c.2236-26G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|7|1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17563250 SNP-3.17562031. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr706Ser/c.2116G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17563979 SNP-3.17562760. C A . . PR;EFF=intron_variant(MODIFIER|||c.1485-19G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|5|1) GT 0/0 0/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 ./. 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17564067 SNP-3.17562848. C A . . PR;EFF=intron_variant(MODIFIER|||c.1485-107G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|5|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17565100 SNP-3.17563881. C A . . PR;EFF=intron_variant(MODIFIER|||c.912+51G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|2|1) GT 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 +3 17565577 SNP-3.17564358. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAg/cCg|p.Gln174Pro/c.521T>C|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/1 ./. ./. ./. ./. ./. ./. ./. 1/1 0/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 +3 17566239 SNP-3.17565020. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17569115 SNP-3.17567896. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17569291 SNP-3.17568072. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17571662 SNP-3.17570443. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgG/cgC|p.Arg29Arg/c.87T>C|188|LOC_Os03g30830|protein_coding|CODING|LOC_Os03g30830.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/1 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17572718 SNP-3.17571499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17575636 SNP-3.17574417. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17576639 SNP-3.17575420. A G . . PR;EFF=synonymous_variant(LOW||ggG/ggG|p.Gly39Gly/c.117A>G|179|LOC_Os03g30840|protein_coding|CODING|LOC_Os03g30840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/1 ./. 0/0 0/0 0/1 0/1 0/1 0/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/1 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 +3 17576948 SNP-3.17575729. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser142Ser/c.426C>A|179|LOC_Os03g30840|protein_coding|CODING|LOC_Os03g30840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17576971 SNP-3.17575752. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aGg|p.Thr150Arg/c.449A>G|179|LOC_Os03g30840|protein_coding|CODING|LOC_Os03g30840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 ./. 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/1 0/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 +3 17577331 SNP-3.17576112. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17578832 SNP-3.17577613. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17579282 SNP-3.17578063. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17579520 SNP-3.17578301. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17580566 SNP-3.17579347. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17580647 SNP-3.17579428. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17582407 SNP-3.17581188. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. +3 17588477 SNP-3.17587258. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAg/gGg|p.Glu92Gly/c.275A>G|321|LOC_Os03g30870|protein_coding|CODING|LOC_Os03g30870.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 ./. +3 17589116 SNP-3.17587897. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggA|p.Gly291Gly/c.873C>A|321|LOC_Os03g30870|protein_coding|CODING|LOC_Os03g30870.1|2|1) GT 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17590927 SNP-3.17589708. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 +3 17591211 SNP-3.17589992. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 +3 17591506 SNP-3.17590287cg. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 +3 17591879 SNP-3.17590660. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17592358 SNP-3.17591139. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17593386 SNP-3.17592167. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17593464 SNP-3.17592245. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17594845 SNP-3.17593626. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17595808 SNP-3.17594589. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17596615 SNP-3.17595396. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17598380 SNP-3.17597161. A G . . PR;EFF=intron_variant(MODIFIER|||c.139-68T>C|194|LOC_Os03g30880|protein_coding|CODING|LOC_Os03g30880.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17598768 SNP-3.17597549. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17599074 SNP-3.17597855. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 0/1 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/1 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 0/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17600387 SNP-3.17599168. A G . . PR;EFF=intron_variant(MODIFIER|||c.-79-378A>G|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|1|1),intron_variant(MODIFIER|||c.-183-637A>G|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|1|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17602120 SNP-3.17600901. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAt/aGt|p.Asn426Ser/c.1277A>G|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|2|1),missense_variant(MODERATE|MISSENSE|aAt/aGt|p.Asn305Ser/c.914A>G|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|2|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17602951 SNP-3.17601732. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg703Arg/c.2108A>G|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cGa/cGa|p.Arg582Arg/c.1745A>G|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17603083 SNP-3.17601864. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGt/aAt|p.Ser747Asn/c.2240C>A|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aGt/aAt|p.Ser626Asn/c.1877C>A|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17605753 SNP-3.17604534. A G . . PR;EFF=synonymous_variant(LOW||tGt/tGt|p.Cys161Cys/c.482A>G|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17606218 SNP-3.17604999. C A . . PR;EFF=intron_variant(MODIFIER|||c.892+55C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17606459 SNP-3.17605240. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgt/Agt|p.Cys345Ser/c.1033C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17607362 SNP-3.17606143. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Caa/Aaa|p.Gln646Lys/c.1936C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17607398 SNP-3.17606179. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgc/Agc|p.Cys658Ser/c.1972C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17607425 SNP-3.17606206. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys667Lys/c.1999C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17610485 SNP-3.17609266. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17610961 SNP-3.17609742. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17611345 SNP-3.17610126. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||1421|c.-348A>G|250|LOC_Os03g30920|protein_coding|CODING|LOC_Os03g30920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17613346 SNP-3.17612127. C A . . PR;EFF=synonymous_variant(LOW||cAg/cAg|p.Gln194Gln/c.581C>A|250|LOC_Os03g30920|protein_coding|CODING|LOC_Os03g30920.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17614049 SNP-3.17612830. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17615482 SNP-3.17614263. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. ./. ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17616753 SNP-3.17615534. A G . . PR;EFF=intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|6|1),intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.2|5|1),intron_variant(MODIFIER|||c.*3-15T>C|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|6|1),intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|6|1),intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.5|5|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17621240 SNP-3.17620021. A G . . PR;EFF=intron_variant(MODIFIER|||c.-389-574T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|1|1),intron_variant(MODIFIER|||c.-389-574T>C|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|1|1),intron_variant(MODIFIER|||c.-358-574T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 +3 17621876 SNP-3.17620657. C A . . PR;EFF=intron_variant(MODIFIER|||c.-390+157G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|1|1),intron_variant(MODIFIER|||c.-390+157G>T|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|1|1),intron_variant(MODIFIER|||c.-359+157G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|1|1) GT ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17621997 SNP-3.17620778. C A . . PR;EFF=intron_variant(MODIFIER|||c.-390+36G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|1|1),intron_variant(MODIFIER|||c.-390+36G>T|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|1|1),intron_variant(MODIFIER|||c.-359+36G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 +3 17623026 SNP-3.17621807. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 +3 17623785 SNP-3.17622566. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcT|p.Ala403Ala/c.1209G>T|418|LOC_Os03g30950|protein_coding|CODING|LOC_Os03g30950.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 +3 17625611 SNP-3.17624392. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 +3 17626123 SNP-3.17624904. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 17627375 SNP-3.17626156. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 17634856 SNP-3.17633637. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17634974 SNP-3.17633755. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17635011 SNP-3.17633792. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/1 0/0 1/1 ./. 0/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 +3 17636302 SNP-3.17635083. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17639132 SNP-3.17637913. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17639226 SNP-3.17638007. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 17642147 SNP-3.17640928. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17643112 SNP-3.17641893. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 17643875 SNP-3.17642656. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/1 1/1 0/0 +3 17644445 SNP-3.17643226. A G . . PR;EFF=intron_variant(MODIFIER|||c.57+364A>G|628|LOC_Os03g30980|protein_coding|CODING|LOC_Os03g30980.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17644856 SNP-3.17643637. C A . . PR;EFF=intron_variant(MODIFIER|||c.58-126C>A|628|LOC_Os03g30980|protein_coding|CODING|LOC_Os03g30980.1|1|1) GT ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17647013 SNP-3.17645794. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggA|p.Gly439Gly/c.1317C>A|628|LOC_Os03g30980|protein_coding|CODING|LOC_Os03g30980.1|5|1) GT 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17650140 SNP-3.17648921. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcA/gcT|p.Ala1085Ala/c.3255G>T|1547|LOC_Os03g30990|protein_coding|CODING|LOC_Os03g30990.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17662282 SNP-3.17661063. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccA|p.Pro147Pro/c.441C>A|692|LOC_Os03g31000|protein_coding|CODING|LOC_Os03g31000.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 17664128 SNP-3.17662909. A G . . PR;EFF=intron_variant(MODIFIER|||c.765+1161A>G|692|LOC_Os03g31000|protein_coding|CODING|LOC_Os03g31000.1|8|1) GT 0/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 ./. 0/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 0/0 1/1 +3 17667100 SNP-3.17665881. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe601Leu/c.1803C>A|692|LOC_Os03g31000|protein_coding|CODING|LOC_Os03g31000.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 17667874 SNP-3.17666655. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17670005 SNP-3.17668786. A G . . PR;EFF=intron_variant(MODIFIER|||c.303+352A>G|525|LOC_Os03g31010|protein_coding|CODING|LOC_Os03g31010.1|2|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17671978 SNP-3.17670759. A G . . PR;EFF=synonymous_variant(LOW||Gct/Gct|p.Ala336Ala/c.1006A>G|525|LOC_Os03g31010|protein_coding|CODING|LOC_Os03g31010.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17672027 SNP-3.17670808. A G . . PR;EFF=intron_variant(MODIFIER|||c.1023+32A>G|525|LOC_Os03g31010|protein_coding|CODING|LOC_Os03g31010.1|7|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17675851 SNP-3.17674632. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|1|1),5_prime_UTR_premature_start_codon_gain_variant(LOW||||123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|1|1),5_prime_UTR_variant(MODIFIER||847|c.-736A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|1|1),5_prime_UTR_variant(MODIFIER||847|c.-736A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|1|1) GT 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. +3 17676214 SNP-3.17674995. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||484|c.-484C>A|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||484|c.-484C>A|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17676653 SNP-3.17675434. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||45|c.-45A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||45|c.-45A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 +3 17678550 SNP-3.17677331. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17678991 SNP-3.17677772. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17683160 SNP-3.17681941. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cCt|p.His351Pro/c.1052T>C|616|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.2|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||526|c.-526T>C|167|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17683326 SNP-3.17682107. A G . . PR;EFF=intron_variant(MODIFIER|||c.-676-16T>C|167|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.1|7|1),intron_variant(MODIFIER|||c.902-16T>C|616|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.2|9|1) GT 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17687960 SNP-3.17686741. A G . . PR;EFF=intron_variant(MODIFIER|||c.-1796-52T>C|167|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.1|1|1),intron_variant(MODIFIER|||c.49-52T>C|616|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.2|1|1) GT 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 +3 17688883 SNP-3.17687664. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17689826 SNP-3.17688607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17691873 SNP-3.17690654. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 +3 17692504 SNP-3.17691285. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17695096 SNP-3.17693877. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 +3 17697028 SNP-3.17695809. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggT/ggA|p.Gly61Gly/c.183C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 +3 17697157 SNP-3.17695938. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro104Pro/c.312C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17697224 SNP-3.17696005. A G . . PR;EFF=synonymous_variant(LOW||Ggg/Ggg|p.Gly127Gly/c.379A>G|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 1/1 +3 17697781 SNP-3.17696562. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu215Leu/c.645A>G|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17697883 SNP-3.17696664. C A . . PR;EFF=synonymous_variant(LOW||ttA/ttA|p.Leu249Leu/c.747C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17698451 SNP-3.17697232. C A . . PR;EFF=synonymous_variant(LOW|SILENT|atC/atA|p.Ile316Ile/c.948C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17698502 SNP-3.17697283. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe333Leu/c.999C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17698841 SNP-3.17697622. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taA|p.Tyr446*/c.1338C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g31060|LOC_Os03g31060|1|1.00);NMD=(LOC_Os03g31060|LOC_Os03g31060|1|1.00) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17698925 SNP-3.17697706. C A . . PR;EFF=synonymous_variant(LOW||gcA/gcA|p.Ala474Ala/c.1422C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17699075 SNP-3.17697856. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu524Leu/c.1572C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17700323 SNP-3.17699104. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17700524 SNP-3.17699305. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17702270 SNP-3.17701051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17702415 SNP-3.17701196. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 17710758 SNP-3.17709539. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 +3 17710982 SNP-3.17709763. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17713163 SNP-3.17711944. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 +3 17714585 SNP-3.17713366. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17714710 SNP-3.17713491. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17716008 SNP-3.17714789. A G . . PR;EFF=intron_variant(MODIFIER|||c.181+59A>G|146|LOC_Os03g31090|protein_coding|CODING|LOC_Os03g31090.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 +3 17717694 SNP-3.17716475. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17717750 SNP-3.17716531. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 +3 17718986 SNP-3.17717767. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17721273 SNP-3.17720054. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGt/aTt|p.Ser180Ile/c.539G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.1|2|1),missense_variant(MODERATE|MISSENSE|aGt/aTt|p.Ser180Ile/c.539G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.2|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17721786 SNP-3.17720567. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCc/tTc|p.Ser9Phe/c.26G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|tCc/tTc|p.Ser9Phe/c.26G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17723480 SNP-3.17722261. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggG/ggT|p.Gly178Gly/c.534G>T|202|LOC_Os03g31120|protein_coding|CODING|LOC_Os03g31120.1|3|1) GT 0/0 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 ./. 0/1 ./. ./. 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 +3 17723948 SNP-3.17722729. C A . . PR;EFF=intron_variant(MODIFIER|||c.397-22G>T|202|LOC_Os03g31120|protein_coding|CODING|LOC_Os03g31120.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17725427 SNP-3.17724208. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17725668 SNP-3.17724449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17729295 SNP-3.17728076. C A . . PR;EFF=intron_variant(MODIFIER|||c.427-50C>A|1518|LOC_Os03g31134|protein_coding|CODING|LOC_Os03g31134.1|4|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17729801 SNP-3.17728582. C A . . PR;EFF=intron_variant(MODIFIER|||c.521+362C>A|1518|LOC_Os03g31134|protein_coding|CODING|LOC_Os03g31134.1|5|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17737118 SNP-3.17735899. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17737696 SNP-3.17736477. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 17739317 SNP-3.17738098. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtG/gtA|p.Val373Val/c.1119C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|gtG/gtA|p.Val373Val/c.1119C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|gtG/gtA|p.Val373Val/c.1119C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17740471 SNP-3.17739252. C A . . PR;EFF=intron_variant(MODIFIER|||c.1852-133C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.1|2|1),intron_variant(MODIFIER|||c.1852-133C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.2|2|1),intron_variant(MODIFIER|||c.1852-133C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.3|2|1) GT 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 +3 17741343 SNP-3.17740124. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||668|c.*668A>G|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.1|3|1),3_prime_UTR_variant(MODIFIER||668|c.*421A>G|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.3|4|1),3_prime_UTR_variant(MODIFIER||668|c.*229A>G|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.2|4|1) GT ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17743311 SNP-3.17742092ga. A G . . PR;EFF=intron_variant(MODIFIER|||c.*296-407A>G|122|LOC_Os03g31160|protein_coding|CODING|LOC_Os03g31160.1|2|1) GT ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/1 ./. 1/1 1/1 ./. 0/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17743358 SNP-3.17742139. A G . . PR;EFF=intron_variant(MODIFIER|||c.*296-360A>G|122|LOC_Os03g31160|protein_coding|CODING|LOC_Os03g31160.1|2|1) GT ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. +3 17744426 SNP-3.17743207. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 +3 17746158 SNP-3.17744939. C A . . PR;EFF=intron_variant(MODIFIER|||c.857+130G>T|322|LOC_Os03g31170|protein_coding|CODING|LOC_Os03g31170.1|8|1),intron_variant(MODIFIER|||c.*225+130G>T|258|LOC_Os03g31170|protein_coding|CODING|LOC_Os03g31170.3|7|1),intron_variant(MODIFIER|||c.722-401G>T|244|LOC_Os03g31170|protein_coding|CODING|LOC_Os03g31170.2|7|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 17749213 SNP-3.17747994. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17749696 SNP-3.17748477. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17749998 SNP-3.17748779. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 +3 17750962 SNP-3.17749743. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 17752329 SNP-3.17751110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17752493 SNP-3.17751274. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. ./. 0/0 ./. 1/1 0/0 +3 17752871 SNP-3.17751652. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17753299 SNP-3.17752080. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17753741 SNP-3.17752522. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17755529 SNP-3.17754310. C A . . PR;EFF=intron_variant(MODIFIER|||c.-57+596C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|1|1),intron_variant(MODIFIER|||c.-49+596C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|1|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17756804 SNP-3.17755585. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val48Asp/c.143C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val48Asp/c.143C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17759634 SNP-3.17758415. C A . . PR;EFF=intron_variant(MODIFIER|||c.1648-104C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|4|1),intron_variant(MODIFIER|||c.*1096-104C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|3|1),intron_variant(MODIFIER|||c.106-104C>A|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|3|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17759705 SNP-3.17758486. C A . . PR;EFF=intron_variant(MODIFIER|||c.1648-33C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|4|1),intron_variant(MODIFIER|||c.*1096-33C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|3|1),intron_variant(MODIFIER|||c.106-33C>A|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|3|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17760048 SNP-3.17758829. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ccA/ccG|p.Pro621Pro/c.1863A>G|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|6|1),synonymous_variant(LOW|SILENT|ccA/ccG|p.Pro107Pro/c.321A>G|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|5|1),3_prime_UTR_variant(MODIFIER||2115|c.*1311A>G|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|5|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 +3 17761017 SNP-3.17759798. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||3084|c.*2087C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|7|1),3_prime_UTR_variant(MODIFIER||419|c.*419C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|8|1),3_prime_UTR_variant(MODIFIER||419|c.*419C>A|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|7|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 17769310 SNP-3.17768091. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17772479 SNP-3.17771260. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17772942 SNP-3.17771723. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 17776061 SNP-3.17774842. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acA|p.Thr430Thr/c.1290C>A|490|LOC_Os03g31210|protein_coding|CODING|LOC_Os03g31210.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17776178 SNP-3.17774959. C A . . PR;EFF=synonymous_variant(LOW||ggA/ggA|p.Gly469Gly/c.1407C>A|490|LOC_Os03g31210|protein_coding|CODING|LOC_Os03g31210.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17777038 SNP-3.17775819. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17777759 SNP-3.17776540. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 +3 17781236 SNP-3.17780017. A G . . PR;EFF=intron_variant(MODIFIER|||c.-6-416A>G|520|LOC_Os03g31230|protein_coding|CODING|LOC_Os03g31230.1|1|1),intron_variant(MODIFIER|||c.-6-416A>G|520|LOC_Os03g31230|protein_coding|CODING|LOC_Os03g31230.2|1|1) GT 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. +3 17787709 SNP-3.17786490. A G . . PR;EFF=synonymous_variant(LOW||gCc/gCc|p.Ala401Ala/c.1202T>C|417|LOC_Os03g31240|protein_coding|CODING|LOC_Os03g31240.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17788017 SNP-3.17786798. A G . . PR;EFF=synonymous_variant(LOW||cgC/cgC|p.Arg298Arg/c.894T>C|417|LOC_Os03g31240|protein_coding|CODING|LOC_Os03g31240.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/1 ./. 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 1/1 +3 17789783 SNP-3.17788564. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17790869 SNP-3.17789650. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17792735 SNP-3.17791516. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17794718 SNP-3.17793499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17795243 SNP-3.17794024. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 +3 17795350 SNP-3.17794131. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 +3 17796195 SNP-3.17794976. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17797088 SNP-3.17795869. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17798652 SNP-3.17797433. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 +3 17799588 SNP-3.17798369. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 +3 17802464 SNP-3.17801245. A G . . PR;EFF=synonymous_variant(LOW||tCa/tCa|p.Ser91Ser/c.272T>C|100|LOC_Os03g31254|protein_coding|CODING|LOC_Os03g31254.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17802533 SNP-3.17801314. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGa/cTa|p.Arg68Leu/c.203G>T|100|LOC_Os03g31254|protein_coding|CODING|LOC_Os03g31254.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17803332 SNP-3.17802113. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 +3 17805262 SNP-3.17804043. C A . . PR;EFF=intron_variant(MODIFIER|||c.318+40G>T|189|LOC_Os03g31260|protein_coding|CODING|LOC_Os03g31260.1|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17806401 SNP-3.17805182. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. ./. 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17806488 SNP-3.17805269. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17806804 SNP-3.17805585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17810344 SNP-3.17809125. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17811027 SNP-3.17809808. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17811450 SNP-3.17810231. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 17811831 SNP-3.17810612. A G . . PR;EFF=synonymous_variant(LOW||cCt/cCt|p.Pro72Pro/c.215T>C|150|LOC_Os03g31270|protein_coding|CODING|LOC_Os03g31270.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17812437 SNP-3.17811218. C A . . PR;EFF=intron_variant(MODIFIER|||c.38-222G>T|150|LOC_Os03g31270|protein_coding|CODING|LOC_Os03g31270.1|1|1) GT 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17812885 SNP-3.17811666. C A . . PR;EFF=intron_variant(MODIFIER|||c.37+287G>T|150|LOC_Os03g31270|protein_coding|CODING|LOC_Os03g31270.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17814827 SNP-3.17813608. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 +3 17815796 SNP-3.17814577. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 +3 17815870 SNP-3.17814651. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17816430 SNP-3.17815211. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17817749 SNP-3.17816530. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17818220 SNP-3.17817001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 +3 17818324 SNP-3.17817105. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gag/Tag|p.Glu192*/c.574G>T|196|LOC_Os03g31280|protein_coding|CODING|LOC_Os03g31280.1|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17822048 SNP-3.17820829. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17823232 SNP-3.17822013. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 17823757 SNP-3.17822538. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17824014 SNP-3.17822795. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 0/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 17825278 SNP-3.17824059. C A . . PR;EFF=intron_variant(MODIFIER|||c.136+619C>A|120|LOC_Os03g31290|protein_coding|CODING|LOC_Os03g31290.1|2|1),intron_variant(MODIFIER|||c.136+619C>A|119|LOC_Os03g31290|protein_coding|CODING|LOC_Os03g31290.2|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17828059 SNP-3.17826840. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 17828261 SNP-3.17827042. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 ./. 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 +3 17831799 SNP-3.17830580. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17831851 SNP-3.17830632. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 ./. ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/0 +3 17834227 SNP-3.17833008. C A . . PR;EFF=intron_variant(MODIFIER|||c.706+576C>A|978|LOC_Os03g31300|protein_coding|CODING|LOC_Os03g31300.1|4|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17835071 SNP-3.17833852. C A . . PR;EFF=intron_variant(MODIFIER|||c.903-25C>A|978|LOC_Os03g31300|protein_coding|CODING|LOC_Os03g31300.1|5|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 +3 17836160 SNP-3.17834941. C A . . PR;EFF=intron_variant(MODIFIER|||c.1108+307C>A|978|LOC_Os03g31300|protein_coding|CODING|LOC_Os03g31300.1|7|1) GT 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 +3 17842285 SNP-3.17841066. C A . . PR;EFF=splice_region_variant(LOW|||c.875G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.5|3|1),3_prime_UTR_variant(MODIFIER||651|c.*135G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.3|3|1),intron_variant(MODIFIER|||c.*130+5G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.5|3|1),intron_variant(MODIFIER|||c.*19+632G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.1|2|1),intron_variant(MODIFIER|||c.*19+632G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.2|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17843926 SNP-3.17842707. A G . . PR;EFF=intron_variant(MODIFIER|||c.-59+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.2|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.1|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.3|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.4|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.5|1|1) GT ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 +3 17845162 SNP-3.17843943. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17845517 SNP-3.17844298. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 +3 17846359 SNP-3.17845140. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 +3 17846743 SNP-3.17845524. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17846903 SNP-3.17845684. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17847862 SNP-3.17846643. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 17848071 SNP-3.17846852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 17850031 SNP-3.17848812. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17850248 SNP-3.17849029. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17851173 SNP-3.17849954. C A . . PR;EFF=synonymous_variant(LOW||tTg/tTg|p.Leu197Leu/c.590G>T|267|LOC_Os03g31320|protein_coding|CODING|LOC_Os03g31320.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||tTg/tTg|p.Leu197Leu/c.590G>T|267|LOC_Os03g31320|protein_coding|CODING|LOC_Os03g31320.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17854397 SNP-3.17853178. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 17854705 SNP-3.17853486. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17856249 SNP-3.17855030. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 +3 17858169 SNP-3.17856950. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17858214 SNP-3.17856995. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. +3 17858548 SNP-3.17857329. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17859237 SNP-3.17858018. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Cca|p.Ala55Pro/c.163T>C|71|LOC_Os03g31340|protein_coding|CODING|LOC_Os03g31340.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17859404 SNP-3.17858185. C A . . PR;EFF=synonymous_variant(LOW||caT/caT|p.His26His/c.78G>T|71|LOC_Os03g31340|protein_coding|CODING|LOC_Os03g31340.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17859425 SNP-3.17858206. C A . . PR;EFF=synonymous_variant(LOW||atT/atT|p.Ile19Ile/c.57G>T|71|LOC_Os03g31340|protein_coding|CODING|LOC_Os03g31340.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17861061 SNP-3.17859842. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17861116 SNP-3.17859897. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. +3 17861866 SNP-3.17860647. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17863220 SNP-3.17862001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17864056 SNP-3.17862837. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 +3 17865173 SNP-3.17863954. A G . . PR;EFF=synonymous_variant(LOW||tcG/tcG|p.Ser224Ser/c.672A>G|496|LOC_Os03g31360|protein_coding|CODING|LOC_Os03g31360.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17865357 SNP-3.17864138. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tcg/Acg|p.Ser286Thr/c.856C>A|496|LOC_Os03g31360|protein_coding|CODING|LOC_Os03g31360.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 17872703 SNP-3.17871484. C A . . PR;EFF=synonymous_variant(LOW||gAt/gAt|p.Asp174Asp/c.521C>A|204|LOC_Os03g31370|protein_coding|CODING|LOC_Os03g31370.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 +3 17874141 SNP-3.17872922. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17877248 SNP-3.17876029. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17878064 SNP-3.17876845. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 +3 17878462 SNP-3.17877243. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. +3 17878731 SNP-3.17877512. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17879535 SNP-3.17878316. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 17879666 SNP-3.17878447. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 +3 17879911 SNP-3.17878692. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17879955 SNP-3.17878736. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 17880337 SNP-3.17879118. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17881301 SNP-3.17880082. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17881763 SNP-3.17880544. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17882403 SNP-3.17881184. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17882842 SNP-3.17881623. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17891933 SNP-3.17890714. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||205|c.*205C>A|1036|LOC_Os03g31400|protein_coding|CODING|LOC_Os03g31400.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17896140 SNP-3.17894921. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17896605 SNP-3.17895386. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17899309 SNP-3.17898090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 +3 17900103 SNP-3.17898884. A G . . PR;EFF=intron_variant(MODIFIER|||c.1476-382T>C|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|8|1) GT 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 +3 17900223 SNP-3.17899004. A G . . PR;EFF=intron_variant(MODIFIER|||c.1476-502T>C|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|8|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 +3 17900413 SNP-3.17899194. C A . . PR;EFF=intron_variant(MODIFIER|||c.1476-692G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|8|1) GT 0/1 1/1 ./. 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 +3 17902941 SNP-3.17901722. C A . . PR;EFF=intron_variant(MODIFIER|||c.1327-38G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|6|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17905010 SNP-3.17903791. C A . . PR;EFF=intron_variant(MODIFIER|||c.170-67G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17905238 SNP-3.17904019. C A . . PR;EFF=intron_variant(MODIFIER|||c.170-295G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|1|1) GT ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 17906462 SNP-3.17905243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 +3 17906573 SNP-3.17905354. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17907372 SNP-3.17906153. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. +3 17908145 SNP-3.17906926. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17909039 SNP-3.17907820. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17909506 SNP-3.17908287. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 +3 17909598 SNP-3.17908379. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 +3 17909991 SNP-3.17908772. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17910209 SNP-3.17908990. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/1 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 +3 17910760 SNP-3.17909541. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 17911107 SNP-3.17909888. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17912986 SNP-3.17911767. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 17914329 SNP-3.17913110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17914983 SNP-3.17913764. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggC|p.Gly154Gly/c.462T>C|179|LOC_Os03g31440|protein_coding|CODING|LOC_Os03g31440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 1/1 0/1 0/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17918451 SNP-3.17917232. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17920626 SNP-3.17919407. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17925657 SNP-3.17924438. C A . . PR;EFF=intron_variant(MODIFIER|||c.44-413G>T|611|LOC_Os03g31446|protein_coding|CODING|LOC_Os03g31446.1|1|1) GT ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 17926056 SNP-3.17924837. C A . . PR;EFF=intron_variant(MODIFIER|||c.43+237G>T|611|LOC_Os03g31446|protein_coding|CODING|LOC_Os03g31446.1|1|1) GT ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 17933050 SNP-3.17931831. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 +3 17934255 SNP-3.17933036. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17936247 SNP-3.17935028ag. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 ./. ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17936587 SNP-3.17935368. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 +3 17936998 SNP-3.17935779. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 17937439 SNP-3.17936220. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 17937570 SNP-3.17936351. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 17937691 SNP-3.17936472. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17938830 SNP-3.17937611. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 +3 17939626 SNP-3.17938407. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||327|LOC_Os03g31490|protein_coding|CODING|LOC_Os03g31490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||55|c.-55A>G|327|LOC_Os03g31490|protein_coding|CODING|LOC_Os03g31490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 +3 17940982 SNP-3.17939763. A G . . PR;EFF=intron_variant(MODIFIER|||c.570+502A>G|327|LOC_Os03g31490|protein_coding|CODING|LOC_Os03g31490.1|2|1) GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17944076 SNP-3.17942857. C A . . PR;EFF=initiator_codon_variant(LOW|MISSENSE|Atg/Ttg|p.Met1?/c.1G>T|99|LOC_Os03g31500|protein_coding|CODING|LOC_Os03g31500.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 17944679 SNP-3.17943460. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17945505 SNP-3.17944286. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. +3 17947981 SNP-3.17946762. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17948270 SNP-3.17947051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17948702 SNP-3.17947483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17952951 SNP-3.17951732. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 17953359 SNP-3.17952140. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 17954034 SNP-3.17952815. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17956417 SNP-3.17955198. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtT|p.Val464Val/c.1392G>T|511|LOC_Os03g31520|protein_coding|CODING|LOC_Os03g31520.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 17958188 SNP-3.17956969. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. +3 17963359 SNP-3.17962140. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn147Asn/c.441G>T|1177|LOC_Os03g31530|protein_coding|CODING|LOC_Os03g31530.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 17964765 SNP-3.17963546. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 +3 17966864 SNP-3.17965645. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17966914 SNP-3.17965695. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 17967272 SNP-3.17966053. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 +3 17970951 SNP-3.17969732. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17971628 SNP-3.17970409. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 0/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 0/1 1/1 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 17972515 SNP-3.17971296. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaA|p.Asn224Lys/c.672C>A|557|LOC_Os03g31542|protein_coding|CODING|LOC_Os03g31542.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/1 0/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 17972810 SNP-3.17971591. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu280Met/c.838C>A|557|LOC_Os03g31542|protein_coding|CODING|LOC_Os03g31542.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17973107 SNP-3.17971888. C A . . PR;EFF=synonymous_variant(LOW||Ata/Ata|p.Ile379Ile/c.1135C>A|557|LOC_Os03g31542|protein_coding|CODING|LOC_Os03g31542.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17976158 SNP-3.17974939. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. +3 17976415 SNP-3.17975196. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/1 1/1 0/0 +3 17977120 SNP-3.17975901. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg89Arg/c.266A>G|107|LOC_Os03g31544|protein_coding|CODING|LOC_Os03g31544.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 17980378 SNP-3.17979159. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. +3 17982733 SNP-3.17981514. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 +3 17982916 SNP-3.17981697. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 +3 17982990 SNP-3.17981771. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 17983222 SNP-3.17982003. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTt/cAt|p.Leu22His/c.65C>A|223|LOC_Os03g31546|protein_coding|CODING|LOC_Os03g31546.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 17983505 SNP-3.17982286. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp116Glu/c.348A>G|223|LOC_Os03g31546|protein_coding|CODING|LOC_Os03g31546.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 17984594 SNP-3.17983375. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17984801 SNP-3.17983582. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 17985314 SNP-3.17984095. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 17987234 SNP-3.17986015. A G . . PR;EFF=intron_variant(MODIFIER|||c.-87+118A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|2|1),intron_variant(MODIFIER|||c.242+118A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|2|1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 17992019 SNP-3.17990800. A G . . PR;EFF=intron_variant(MODIFIER|||c.2413-588A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|6|1),intron_variant(MODIFIER|||c.2122-588A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17992271 SNP-3.17991052. A G . . PR;EFF=intron_variant(MODIFIER|||c.2413-336A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|6|1),intron_variant(MODIFIER|||c.2122-336A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|6|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 17993746 SNP-3.17992527. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acG|p.Thr1047Thr/c.3141A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acT/acG|p.Thr950Thr/c.2850A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 17994360 SNP-3.17993141. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr1069Thr/c.3207C>A|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr972Thr/c.2916C>A|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 17998130 SNP-3.17996911. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys1366Lys/c.4098C>A|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys1269Lys/c.3807C>A|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18001028 SNP-3.17999809. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18001240 SNP-3.18000021. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 +3 18001843 SNP-3.18000624. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18002512 SNP-3.18001293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18004541 SNP-3.18003322. A G . . PR;EFF=synonymous_variant(LOW||gGt/gGt|p.Gly29Gly/c.86A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 +3 18005201 SNP-3.18003982. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGa/cAa|p.Arg249Gln/c.746C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 +3 18005519 SNP-3.18004300. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aGt|p.Thr355Ser/c.1064A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 +3 18006612 SNP-3.18005393. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val643Asp/c.1928C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18007453 SNP-3.18006234. A G . . PR;EFF=synonymous_variant(LOW||cGc/cGc|p.Arg805Arg/c.2414A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 +3 18007753 SNP-3.18006534. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aGa|p.Ile905Arg/c.2714A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 18008086 SNP-3.18006867. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe946Leu/c.2838C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18008186 SNP-3.18006967. C A . . PR;EFF=intron_variant(MODIFIER|||c.2927+11C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|4|1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18009334 SNP-3.18008115. C A . . PR;EFF=synonymous_variant(LOW||tAc/tAc|p.Tyr1116Tyr/c.3347C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 +3 18010017 SNP-3.18008798. C A . . PR;EFF=intron_variant(MODIFIER|||c.3647+51C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|9|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18010363 SNP-3.18009144. C A . . PR;EFF=intron_variant(MODIFIER|||c.3827+19C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|11|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18010609 SNP-3.18009390. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Ggc|p.Arg1304Gly/c.3910A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18010730 SNP-3.18009511. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val1344Asp/c.4031C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18011285 SNP-3.18010066. C A . . PR;EFF=intron_variant(MODIFIER|||c.4464+39C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|13|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 +3 18012005 SNP-3.18010786. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 +3 18012176 SNP-3.18010957. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18012537 SNP-3.18011318. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18013199 SNP-3.18011980. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 18014557 SNP-3.18013338. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18015174 SNP-3.18013955. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18017113 SNP-3.18015894. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly191Gly/c.573A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18018195 SNP-3.18016976. A G . . PR;EFF=intron_variant(MODIFIER|||c.625-61A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18018315 SNP-3.18017096. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcG|p.Ser228Ser/c.684A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|5|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 18018917 SNP-3.18017698. A G . . PR;EFF=intron_variant(MODIFIER|||c.781-27A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18019947 SNP-3.18018728. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acA|p.Thr358Thr/c.1074C>A|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 +3 18020149 SNP-3.18018930. C A . . PR;EFF=splice_region_variant(LOW|||c.1188C>A|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgA/cgA|p.Arg396Arg/c.1188C>A|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18022146 SNP-3.18020927. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 18022434 SNP-3.18021215. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 18023297 SNP-3.18022078. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18023858 SNP-3.18022639. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18024093 SNP-3.18022874. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18027733 SNP-3.18026514. C A . . PR;EFF=intron_variant(MODIFIER|||c.280-109C>A|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|1|1),intron_variant(MODIFIER|||c.280-109C>A|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 +3 18027874 SNP-3.18026655. A G . . PR;EFF=synonymous_variant(LOW|SILENT|aaA/aaG|p.Lys104Lys/c.312A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|2|1),synonymous_variant(LOW|SILENT|aaA/aaG|p.Lys104Lys/c.312A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18030683 SNP-3.18029464. A G . . PR;EFF=intron_variant(MODIFIER|||c.456+2665A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|2|1),intron_variant(MODIFIER|||c.456+2665A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|2|1) GT 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 18035945 SNP-3.18034726. A G . . PR;EFF=intron_variant(MODIFIER|||c.457-800A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|2|1),intron_variant(MODIFIER|||c.457-800A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|2|1) GT 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 18037971 SNP-3.18036752. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCa/gGa|p.Ala361Gly/c.1082A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gCa/gGa|p.Ala361Gly/c.1082A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 +3 18038175 SNP-3.18036956. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTg/tGg|p.Leu429Trp/c.1286A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|tTg/tGg|p.Leu429Trp/c.1286A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 18040460 SNP-3.18039241. C A . . PR;EFF=intron_variant(MODIFIER|||c.2749+12C>A|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|12|1),intron_variant(MODIFIER|||c.2749+12C>A|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|12|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18041701 SNP-3.18040482. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||369|c.*369C>A|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||369|c.*369C>A|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18041916 SNP-3.18040697. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18042800 SNP-3.18041581. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18043099 SNP-3.18041880. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18043844 SNP-3.18042625. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18043944 SNP-3.18042725. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18044408 SNP-3.18043189. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/1 1/1 0/1 ./. 0/1 ./. 1/1 ./. ./. 0/1 1/1 0/1 0/1 1/1 0/1 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18044523 SNP-3.18043304. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18044759 SNP-3.18043540. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 +3 18044873 SNP-3.18043654. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 18045182 SNP-3.18043963. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18046030 SNP-3.18044811. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val5Glu/c.14C>A|1232|LOC_Os03g31620|protein_coding|CODING|LOC_Os03g31620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18046077 SNP-3.18044858. A G . . PR;EFF=synonymous_variant(LOW||Gga/Gga|p.Gly21Gly/c.61A>G|1232|LOC_Os03g31620|protein_coding|CODING|LOC_Os03g31620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 +3 18048585 SNP-3.18047366. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acA/acG|p.Thr729Thr/c.2187A>G|1232|LOC_Os03g31620|protein_coding|CODING|LOC_Os03g31620.1|5|1) GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 18053020 SNP-3.18051801. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tAt|p.Phe4Tyr/c.11C>A|788|LOC_Os03g31630|protein_coding|CODING|LOC_Os03g31630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/0 1/1 ./. 0/1 0/1 0/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18053071 SNP-3.18051852. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTc/cGc|p.Leu21Arg/c.62A>G|788|LOC_Os03g31630|protein_coding|CODING|LOC_Os03g31630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 +3 18054349 SNP-3.18053130. A G . . PR;EFF=synonymous_variant(LOW||aGc/aGc|p.Ser447Ser/c.1340A>G|788|LOC_Os03g31630|protein_coding|CODING|LOC_Os03g31630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 +3 18062019 SNP-3.18060800. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18063349 SNP-3.18062130. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/1 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/1 0/0 ./. ./. ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 +3 18063776 SNP-3.18062557. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/1 0/1 ./. 1/1 ./. 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 +3 18066116 SNP-3.18064897. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 +3 18068233 SNP-3.18067014. A G . . PR;EFF=synonymous_variant(LOW||Gac/Gac|p.Asp276Asp/c.826A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 +3 18068263 SNP-3.18067044. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cac/Aac|p.His286Asn/c.856C>A|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1) GT 0/0 1/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18068326 SNP-3.18067107. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Caa/Gaa|p.Gln307Glu/c.919A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18068469 SNP-3.18067250. A G . . PR;EFF=splice_acceptor_variant(HIGH|||c.981A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|3|1),intron_variant(MODIFIER|||c.981-1A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1);LOF=(LOC_Os03g31640|LOC_Os03g31640|1|1.00) GT 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 +3 18068608 SNP-3.18067389. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|agC/agG|p.Ser373Arg/c.1119A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 +3 18069083 SNP-3.18067864. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cAt|p.Arg482His/c.1445C>A|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18069191 SNP-3.18067972. A G . . PR;EFF=synonymous_variant(LOW||gcG/gcG|p.Ala493Ala/c.1479A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 18069653 SNP-3.18068434. A G . . PR;EFF=intron_variant(MODIFIER|||c.1760-48A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|6|1) GT 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 18070684 SNP-3.18069465. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His1225Leu/c.3674G>T|1227|LOC_Os03g31650|protein_coding|CODING|LOC_Os03g31650.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 +3 18071668 SNP-3.18070449. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gaa/Taa|p.Glu983*/c.2947G>T|1227|LOC_Os03g31650|protein_coding|CODING|LOC_Os03g31650.1|3|1);LOF=(LOC_Os03g31650|LOC_Os03g31650|1|1.00);NMD=(LOC_Os03g31650|LOC_Os03g31650|1|1.00) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 18074088 SNP-3.18072869. C A . . PR;EFF=intron_variant(MODIFIER|||c.1110-132G>T|1227|LOC_Os03g31650|protein_coding|CODING|LOC_Os03g31650.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18076201 SNP-3.18074982. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 +3 18076436 SNP-3.18075217. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 +3 18078290 SNP-3.18077071. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18079786 SNP-3.18078567. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 +3 18079936 SNP-3.18078717. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile32Asn/c.95C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18080256 SNP-3.18079037. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu139Met/c.415C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18080395 SNP-3.18079176. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTg/cAg|p.Leu185Gln/c.554C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18080830 SNP-3.18079611. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGg/aAg|p.Arg330Lys/c.989C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 0/1 0/0 0/1 0/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18080836 SNP-3.18079617. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCc/tGc|p.Ser332Cys/c.995A>G|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.995A>G|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18081440 SNP-3.18080221. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaC/aaA|p.Asn455Lys/c.1365C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|2|1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 18082040 SNP-3.18080821. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcT|p.Ala156Ala/c.468G>T|173|LOC_Os03g31670|protein_coding|CODING|LOC_Os03g31670.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. +3 18082263 SNP-3.18081044. A G . . PR;EFF=intron_variant(MODIFIER|||c.351-106T>C|173|LOC_Os03g31670|protein_coding|CODING|LOC_Os03g31670.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 +3 18082361 SNP-3.18081142. A G . . PR;EFF=intron_variant(MODIFIER|||c.350+145T>C|173|LOC_Os03g31670|protein_coding|CODING|LOC_Os03g31670.1|2|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 +3 18083205 SNP-3.18081986. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18083836 SNP-3.18082617. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18083935 SNP-3.18082716. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 18084528 SNP-3.18083309. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 +3 18084790 SNP-3.18083571. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18085078 SNP-3.18083859. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18086336 SNP-3.18085117. A G . . PR;EFF=intron_variant(MODIFIER|||c.251+256A>G|98|LOC_Os03g31679|protein_coding|CODING|LOC_Os03g31679.1|2|1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/1 ./. 1/1 0/1 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 +3 18087754 SNP-3.18086535. C A . . PR;EFF=intron_variant(MODIFIER|||c.1575-5G>T|576|LOC_Os03g31690|protein_coding|CODING|LOC_Os03g31690.1|9|1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 +3 18088128 SNP-3.18086909. A G . . PR;EFF=intron_variant(MODIFIER|||c.1502-32T>C|576|LOC_Os03g31690|protein_coding|CODING|LOC_Os03g31690.1|8|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 +3 18091827 SNP-3.18090608. C A . . PR;EFF=intron_variant(MODIFIER|||c.349+381G>T|576|LOC_Os03g31690|protein_coding|CODING|LOC_Os03g31690.1|2|1) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 18094199 SNP-3.18092980. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18095781 SNP-3.18094562. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/1 ./. 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 ./. 0/1 0/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 0/0 0/1 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18098167 SNP-3.18096948. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18098474 SNP-3.18097255. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 18100013 SNP-3.18098794. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. +3 18101093 SNP-3.18099874. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18101803 SNP-3.18100584. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 +3 18102046 SNP-3.18100827. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 +3 18107278 SNP-3.18106059. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 +3 18108444 SNP-3.18107225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18109625 SNP-3.18108406. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 +3 18110366 SNP-3.18109147. A G . . PR;EFF=intron_variant(MODIFIER|||c.104-165T>C|76|LOC_Os03g31706|protein_coding|CODING|LOC_Os03g31706.2|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18111046 SNP-3.18109827. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caG/caC|p.Gln18His/c.54T>C|76|LOC_Os03g31706|protein_coding|CODING|LOC_Os03g31706.2|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 18112999 SNP-3.18111780. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18117044 SNP-3.18115825. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18117720 SNP-3.18116501. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 +3 18123585 SNP-3.18122366. C A . . PR;EFF=intron_variant(MODIFIER|||c.-13+3845C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18125023 SNP-3.18123804. C A . . PR;EFF=intron_variant(MODIFIER|||c.-12-2725C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18125204 SNP-3.18123985. A G . . PR;EFF=intron_variant(MODIFIER|||c.-12-2544A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/1 0/1 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 +3 18127525 SNP-3.18126306. A G . . PR;EFF=intron_variant(MODIFIER|||c.-12-223A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 18129260 SNP-3.18128041. A G . . PR;EFF=intron_variant(MODIFIER|||c.68-31A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|3|1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18130823 SNP-3.18129604. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp94Glu/c.282C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|6|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18130888 SNP-3.18129669. C A . . PR;EFF=synonymous_variant(LOW||gAg/gAg|p.Glu116Glu/c.347C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18132049 SNP-3.18130830. A G . . PR;EFF=intron_variant(MODIFIER|||c.790+718A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|6|1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 18134289 SNP-3.18133070. C A . . PR;EFF=intron_variant(MODIFIER|||c.1181+134C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|11|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18137206 SNP-3.18135987. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu531Leu/c.1593C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18137340 SNP-3.18136121. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTc/aAc|p.Ile576Asn/c.1727C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18140715 SNP-3.18139496. A G . . PR;EFF=intron_variant(MODIFIER|||c.1992+32A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|18|1) GT 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 +3 18141261 SNP-3.18140042. C A . . PR;EFF=intron_variant(MODIFIER|||c.1993-147C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|18|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18141694 SNP-3.18140475. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caT/caG|p.His725Gln/c.2175A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|20|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 +3 18143019 SNP-3.18141800. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||165|c.*69C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|23|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18145208 SNP-3.18143989. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18147444 SNP-3.18146225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18148988 SNP-3.18147769. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18149311 SNP-3.18148092. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18149640 SNP-3.18148421. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 +3 18151046 SNP-3.18149827. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 +3 18151458 SNP-3.18150239. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 18151506 SNP-3.18150287. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 18152715 SNP-3.18151496. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 ./. 0/0 ./. 0/1 0/1 ./. 1/1 0/1 0/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 18154695 SNP-3.18153476. A G . . PR;EFF=intron_variant(MODIFIER|||c.2184+69T>C|887|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.1|13|1),intron_variant(MODIFIER|||c.1707+69T>C|728|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.2|12|1),intron_variant(MODIFIER|||c.2199+69T>C|892|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.3|13|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 18158943 SNP-3.18157724. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||343|c.-75G>T|728|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.475-340G>T|887|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.1|2|1),intron_variant(MODIFIER|||c.475-340G>T|892|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.3|2|1) GT 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 +3 18160285 SNP-3.18159066. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 18160356 SNP-3.18159137. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18162961 SNP-3.18161742. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18163077 SNP-3.18161858. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 18163718 SNP-3.18162499. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18163964 SNP-3.18162745. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 +3 18164335 SNP-3.18163116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18166088 SNP-3.18164869. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 18166305 SNP-3.18165086. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18169292 SNP-3.18168073. C A . . PR;EFF=intron_variant(MODIFIER|||c.422+352G>T|218|LOC_Os03g31760|protein_coding|CODING|LOC_Os03g31760.1|4|1) GT ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 +3 18170132 SNP-3.18168913. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Atg/Ctg|p.Met109Leu/c.325T>C|218|LOC_Os03g31760|protein_coding|CODING|LOC_Os03g31760.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18170561 SNP-3.18169342. C A . . PR;EFF=intron_variant(MODIFIER|||c.281+80G>T|218|LOC_Os03g31760|protein_coding|CODING|LOC_Os03g31760.1|2|1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18171460 SNP-3.18170241. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 +3 18171786 SNP-3.18170567. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18175859 SNP-3.18174640. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/1 0/1 ./. ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 0/1 ./. 1/1 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18176323 SNP-3.18175104. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 +3 18176660 SNP-3.18175441. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18176783 SNP-3.18175564. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 18178565 SNP-3.18177346. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 +3 18178993 SNP-3.18177774. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 +3 18180388 SNP-3.18179169. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. +3 18180561 SNP-3.18179342. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 +3 18181071 SNP-3.18179852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18181591 SNP-3.18180372. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 18184907 SNP-3.18183688. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 +3 18189053 SNP-3.18187834. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18189077 SNP-3.18187858. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 +3 18190742 SNP-3.18189523. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 18191154 SNP-3.18189935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 +3 18194227 SNP-3.18193008. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18194382 SNP-3.18193163. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18195767 SNP-3.18194548. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 +3 18195904 SNP-3.18194685. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 +3 18197169 SNP-3.18195950. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 +3 18197577 SNP-3.18196358. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 1/1 0/1 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18197640 SNP-3.18196421. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 0/0 0/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 +3 18197797 SNP-3.18196578. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 +3 18198206 SNP-3.18196987. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18201428 SNP-3.18200209. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18202173 SNP-3.18200954. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18204250 SNP-3.18203031. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18205698 SNP-3.18204479. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18206732 SNP-3.18205513. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18206990 SNP-3.18205771. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18207367 SNP-3.18206148. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 +3 18210131 SNP-3.18208912. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 18212977 SNP-3.18211758. A G . . PR;EFF=intron_variant(MODIFIER|||c.544-301A>G|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18217394 SNP-3.18216175. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gag/Aag|p.Glu515Lys/c.1543C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 ./. 0/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. ./. 0/1 1/1 0/0 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. +3 18218772 SNP-3.18217553. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His963His/c.2888C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 0/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18220398 SNP-3.18219179. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.3927C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|12|1),intron_variant(MODIFIER|||c.3927-2C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|11|1);LOF=(LOC_Os03g31839|LOC_Os03g31839|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18221043 SNP-3.18219824. A G . . PR;EFF=synonymous_variant(LOW||Gac/Gac|p.Asp1472Asp/c.4414A>G|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. +3 18222058 SNP-3.18220839. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu1727Met/c.5179C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|18|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18222085 SNP-3.18220866. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aac/Gac|p.Asn1736Asp/c.5206A>G|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|18|1) GT 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. +3 18223715 SNP-3.18222496. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. +3 18223828 SNP-3.18222609. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18224813 SNP-3.18223594. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18226980 SNP-3.18225761. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18227370 SNP-3.18226151. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18229318 SNP-3.18228099. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18232933 SNP-3.18231714. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 18234891 SNP-3.18233672. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. +3 18235515 SNP-3.18234296. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18235969 SNP-3.18234750. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 ./. ./. ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 18250460 SNP-3.18249241. C A . . PR;EFF=intron_variant(MODIFIER|||c.487-48C>A|678|LOC_Os03g31910|protein_coding|CODING|LOC_Os03g31910.1|2|1) GT ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18251991 SNP-3.18250772. A G . . PR;EFF=intron_variant(MODIFIER|||c.1800+99A>G|678|LOC_Os03g31910|protein_coding|CODING|LOC_Os03g31910.1|4|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 +3 18252450 SNP-3.18251231. A G . . PR;EFF=intron_variant(MODIFIER|||c.1801-540A>G|678|LOC_Os03g31910|protein_coding|CODING|LOC_Os03g31910.1|4|1) GT 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 +3 18255353 SNP-3.18254134. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 +3 18265320 SNP-3.18264101. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 ./. 0/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 +3 18265555 SNP-3.18264336. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 +3 18265571 SNP-3.18264352. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cGg|p.Pro5Arg/c.14A>G|86|LOC_Os03g31934|protein_coding|CODING|LOC_Os03g31934.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18266303 SNP-3.18265084. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18268430 SNP-3.18267211. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18269402 SNP-3.18268183. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 0/1 ./. 1/1 0/1 1/1 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 +3 18270795 SNP-3.18269576. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 +3 18274457 SNP-3.18273238. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 +3 18277824 SNP-3.18276605. C A . . PR;EFF=splice_region_variant(LOW|||c.160C>A|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aac/Aac|p.Asn54Asn/c.160C>A|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18278591 SNP-3.18277372. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro148Arg/c.443A>G|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 +3 18278747 SNP-3.18277528. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gGt|p.Ala200Gly/c.599A>G|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18279472 SNP-3.18278253. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Agg/Cgg|p.Arg150Arg/c.448T>C|213|LOC_Os03g31944|protein_coding|CODING|LOC_Os03g31944.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 +3 18281115 SNP-3.18279896. C A . . PR;EFF=intron_variant(MODIFIER|||c.432+241C>A|175|LOC_Os03g31950|protein_coding|CODING|LOC_Os03g31950.1|1|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18283201 SNP-3.18281982. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18284753 SNP-3.18283534. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln9Glu/c.25A>G|87|LOC_Os03g31970|protein_coding|CODING|LOC_Os03g31970.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18286194 SNP-3.18284975. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 ./. ./. 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 18289270 SNP-3.18288051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18289941 SNP-3.18288722. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 18291412 SNP-3.18290193. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18292401 SNP-3.18291182. C A . . PR;EFF=synonymous_variant(LOW||caA/caA|p.Gln254Gln/c.762C>A|1317|LOC_Os03g31986|protein_coding|CODING|LOC_Os03g31986.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. +3 18299589 SNP-3.18298370. C A . . PR;EFF=intron_variant(MODIFIER|||c.36-166C>A|182|LOC_Os03g31992|protein_coding|CODING|LOC_Os03g31992.1|1|1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. 0/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18299632 SNP-3.18298413. A G . . PR;EFF=intron_variant(MODIFIER|||c.36-123A>G|182|LOC_Os03g31992|protein_coding|CODING|LOC_Os03g31992.1|1|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18299669 SNP-3.18298450. A G . . PR;EFF=intron_variant(MODIFIER|||c.36-86A>G|182|LOC_Os03g31992|protein_coding|CODING|LOC_Os03g31992.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/1 ./. 1/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 +3 18300383 SNP-3.18299164. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 18301062 SNP-3.18299843. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18305619 SNP-3.18304400. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 18310618 SNP-3.18309399. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18310792 SNP-3.18309573. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 +3 18318196 SNP-3.18316977. C A . . PR;EFF=synonymous_variant(LOW||ttT/ttT|p.Phe60Phe/c.180G>T|90|LOC_Os03g32020|protein_coding|CODING|LOC_Os03g32020.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18318613 SNP-3.18317394. A G . . PR;EFF=synonymous_variant(LOW||cCt/cCt|p.Pro9Pro/c.26T>C|90|LOC_Os03g32020|protein_coding|CODING|LOC_Os03g32020.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 +3 18318628 SNP-3.18317409. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tTt|p.Ser4Phe/c.11G>T|90|LOC_Os03g32020|protein_coding|CODING|LOC_Os03g32020.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18319097 SNP-3.18317878. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cAg|p.Pro53Gln/c.158C>A|175|LOC_Os03g32030|protein_coding|CODING|LOC_Os03g32030.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18319439 SNP-3.18318220. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCc/aGc|p.Thr167Ser/c.500A>G|175|LOC_Os03g32030|protein_coding|CODING|LOC_Os03g32030.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 +3 18328011 SNP-3.18326792. A G . . PR;EFF=intron_variant(MODIFIER|||c.617-2174T>C|335|LOC_Os03g32050|protein_coding|CODING|LOC_Os03g32050.1|3|1) GT 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 +3 18333137 SNP-3.18331918. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 18341760 SNP-3.18340541. A G . . PR;EFF=intron_variant(MODIFIER|||c.819+562A>G|575|LOC_Os03g32070|protein_coding|CODING|LOC_Os03g32070.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 18347733 SNP-3.18346514. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 18364447 SNP-3.18363228. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. +3 18372495 SNP-3.18371276. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18372682 SNP-3.18371463. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18373365 SNP-3.18372146. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 +3 18390010 SNP-3.18388791. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 +3 18407077 SNP-3.18405858. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 +3 18407351 SNP-3.18406132. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 18408572 SNP-3.18407353. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGa/aTa|p.Arg190Ile/c.569G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|2|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 +3 18408752 SNP-3.18407533. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gTt|p.Ala130Val/c.389G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 ./. ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/1 0/0 ./. 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 +3 18409058 SNP-3.18407839. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cTc|p.Arg28Leu/c.83G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|2|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 +3 18409330 SNP-3.18408111. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||190|c.-104T>C|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. +3 18409331 SNP-3.18408112. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||191|c.-105T>C|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 +3 18409522 SNP-3.18408303. C A . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||382|c.-296G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. +3 18410408 SNP-3.18409189. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Atc|p.Phe116Ile/c.346C>A|273|LOC_Os03g32180|protein_coding|CODING|LOC_Os03g32180.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_premature_start_codon_gain_variant(LOW||||240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1268|c.-1182G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 18435790 SNP-3.18434571. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18438070 SNP-3.18436851. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18438144 SNP-3.18436925. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18439247 SNP-3.18438028. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18442144 SNP-3.18440925. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/1 0/1 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18442726 SNP-3.18441507. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 +3 18443068 SNP-3.18441849. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. +3 18443765 SNP-3.18442546. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 18444167 SNP-3.18442948. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18444805 SNP-3.18443586. C A . . PR;EFF=intron_variant(MODIFIER|||c.252-37C>A|170|LOC_Os03g32250|protein_coding|CODING|LOC_Os03g32250.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 +3 18458739 SNP-3.18457520. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 18462480 SNP-3.18461261. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18463409 SNP-3.18462190. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 +3 18463744 SNP-3.18462525. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 18467139 SNP-3.18465920. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 +3 18467606 SNP-3.18466387. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18475869 SNP-3.18474650. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18480186 SNP-3.18478967. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 18481758 SNP-3.18480539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18483130 SNP-3.18481911. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Gat|p.His20Asp/c.58A>G|124|LOC_Os03g32302|protein_coding|CODING|LOC_Os03g32302.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 +3 18484788 SNP-3.18483569. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. ./. 0/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 +3 18490760 SNP-3.18489541. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/1 1/1 0/0 +3 18493244 SNP-3.18492025. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18494873 SNP-3.18493654. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 +3 18495638 SNP-3.18494419. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18496206 SNP-3.18494987. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cGg|p.Pro30Arg/c.89A>G|124|LOC_Os03g32330|protein_coding|CODING|LOC_Os03g32330.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 +3 18496335 SNP-3.18495116. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGa/cAa|p.Arg73Gln/c.218C>A|124|LOC_Os03g32330|protein_coding|CODING|LOC_Os03g32330.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 18501666 SNP-3.18500447. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 +3 18501950 SNP-3.18500731. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 +3 18503660 SNP-3.18502441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18503942 SNP-3.18502723. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18513093 SNP-3.18511874. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Atc|p.Val308Ile/c.922C>A|403|LOC_Os03g32360|protein_coding|CODING|LOC_Os03g32360.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 18521763 SNP-3.18520544. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys296Lys/c.888C>A|934|LOC_Os03g32380|protein_coding|CODING|LOC_Os03g32380.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 18524055 SNP-3.18522836. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 +3 18529021 SNP-3.18527802. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly57Glu/c.170C>A|182|LOC_Os03g32390|protein_coding|CODING|LOC_Os03g32390.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 18530324 SNP-3.18529105. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18530788 SNP-3.18529569. C A . . PR;EFF=start_lost(HIGH|MISSENSE|aTg/aAg|p.Met1?/c.2C>A|146|LOC_Os03g32400|protein_coding|CODING|LOC_Os03g32400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g32400|LOC_Os03g32400|1|1.00) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18531959 SNP-3.18530740. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18533769 SNP-3.18532550. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18535113 SNP-3.18533894. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 18535365 SNP-3.18534146. C A . . PR;EFF=synonymous_variant(LOW||aAg/aAg|p.Lys3Lys/c.8C>A|108|LOC_Os03g32410|protein_coding|CODING|LOC_Os03g32410.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18542604 SNP-3.18541385. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18543348 SNP-3.18542129. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18544639 SNP-3.18543420. C A . . PR;EFF=intron_variant(MODIFIER|||c.68-298C>A|77|LOC_Os03g32430|protein_coding|CODING|LOC_Os03g32430.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18545523 SNP-3.18544304. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18548077 SNP-3.18546858. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18548882 SNP-3.18547663. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18549767 SNP-3.18548548. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||359|c.*359G>T|321|LOC_Os03g32440|protein_coding|CODING|LOC_Os03g32440.1|3|1) GT ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 18550008 SNP-3.18548789. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||118|c.*118T>C|321|LOC_Os03g32440|protein_coding|CODING|LOC_Os03g32440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. +3 18550225 SNP-3.18549006. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caA/caT|p.Gln289His/c.867G>T|321|LOC_Os03g32440|protein_coding|CODING|LOC_Os03g32440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18552549 SNP-3.18551330. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 +3 18555016 SNP-3.18553797. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18555796 SNP-3.18554577. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtT|p.Val57Val/c.171G>T|152|LOC_Os03g32450|protein_coding|CODING|LOC_Os03g32450.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18556230 SNP-3.18555011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18558573 SNP-3.18557354. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 +3 18558627 SNP-3.18557408. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 +3 18559120 SNP-3.18557901. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 18559268 SNP-3.18558049. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||541|c.*541G>T|401|LOC_Os03g32460|protein_coding|CODING|LOC_Os03g32460.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 +3 18561310 SNP-3.18560091. C A . . PR;EFF=intron_variant(MODIFIER|||c.20-104G>T|401|LOC_Os03g32460|protein_coding|CODING|LOC_Os03g32460.1|1|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 +3 18561974 SNP-3.18560755. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18564453 SNP-3.18563234. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 +3 18564499 SNP-3.18563280. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18568709 SNP-3.18567490. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 18574317 SNP-3.18573098. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGg/cAg|p.Arg394Gln/c.1181C>A|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18574632 SNP-3.18573413. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile499Lys/c.1496C>A|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18574749 SNP-3.18573530. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val538Gly/c.1613A>G|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 +3 18575195 SNP-3.18573976. A G . . PR;EFF=synonymous_variant(LOW||gtG/gtG|p.Val660Val/c.1980A>G|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18578550 SNP-3.18577331. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/1 0/0 ./. ./. ./. ./. ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 ./. 0/0 ./. ./. 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 +3 18578564 SNP-3.18577345. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. +3 18578743 SNP-3.18577524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 +3 18580725 SNP-3.18579506. C A . . PR;EFF=intron_variant(MODIFIER|||c.114+619C>A|90|LOC_Os03g32499|protein_coding|CODING|LOC_Os03g32499.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 +3 18615582 SNP-3.18614363. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 +3 18617626 SNP-3.18616407. C A . . PR;EFF=synonymous_variant(LOW||cAc/cAc|p.His558His/c.1673C>A|658|LOC_Os03g32550|protein_coding|CODING|LOC_Os03g32550.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18617856 SNP-3.18616637. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgc/Agc|p.Cys635Ser/c.1903C>A|658|LOC_Os03g32550|protein_coding|CODING|LOC_Os03g32550.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 18618966 SNP-3.18617747. C A . . PR;EFF=intron_variant(MODIFIER|||c.1804-14G>T|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|4|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/1 0/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18618983 SNP-3.18617764. A G . . PR;EFF=intron_variant(MODIFIER|||c.1804-31T>C|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|4|1) GT ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18620936 SNP-3.18619717. A G . . PR;EFF=intron_variant(MODIFIER|||c.283+42T>C|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|2|1) GT ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 +3 18621127 SNP-3.18619908. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gCt|p.Val45Ala/c.134T>C|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 +3 18622401 SNP-3.18621182. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 +3 18623735 SNP-3.18622516. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 +3 18625404 SNP-3.18624185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18625780 SNP-3.18624561. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 ./. ./. 0/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 18625896 SNP-3.18624677. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18626554 SNP-3.18625335. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 18627874 SNP-3.18626655. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18628603 SNP-3.18627384. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 +3 18629060 SNP-3.18627841. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18632563 SNP-3.18631344. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18634358 SNP-3.18633139. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 +3 18640611 SNP-3.18639392. C A . . PR;EFF=intron_variant(MODIFIER|||c.1745-28G>T|819|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.1|9|1),intron_variant(MODIFIER|||c.1745-28G>T|685|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.2|9|1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18645295 SNP-3.18644076. A G . . PR;EFF=intron_variant(MODIFIER|||c.167-904T>C|819|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.1|2|1),intron_variant(MODIFIER|||c.167-904T>C|685|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.2|2|1) GT 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 18648463 SNP-3.18647244. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 18649030 SNP-3.18647811. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 +3 18655483 SNP-3.18654264. C A . . PR;EFF=intron_variant(MODIFIER|||c.2422+370G>T|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|5|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 +3 18655739 SNP-3.18654520. A G . . PR;EFF=intron_variant(MODIFIER|||c.2422+114T>C|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|5|1) GT 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. +3 18658396 SNP-3.18657177. A G . . PR;EFF=intron_variant(MODIFIER|||c.1675-75T>C|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|2|1) GT ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 +3 18659416 SNP-3.18658197. A G . . PR;EFF=intron_variant(MODIFIER|||c.899+6T>C|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|1|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 18662162 SNP-3.18660943. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18662402 SNP-3.18661183. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. +3 18664428 SNP-3.18663209. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. +3 18667112 SNP-3.18665893. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18667892 SNP-3.18666673. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18668534 SNP-3.18667315. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18672293 SNP-3.18671074. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18672970 SNP-3.18671751. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18673545 SNP-3.18672326. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18675080 SNP-3.18673861. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18675738 SNP-3.18674519. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18681590 SNP-3.18680349. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aCg|p.Lys283Thr/c.848T>C|837|LOC_Os03g32620|protein_coding|CODING|LOC_Os03g32620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 +3 18683390 SNP-3.18682149. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 +3 18683411 SNP-3.18682170. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18687173 SNP-3.18685932. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAg/gTg|p.Glu710Val/c.2129G>T|710|LOC_Os03g32630|protein_coding|CODING|LOC_Os03g32630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 18687536 SNP-3.18686295. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aCg|p.Lys589Thr/c.1766T>C|710|LOC_Os03g32630|protein_coding|CODING|LOC_Os03g32630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/1 1/1 +3 18688918 SNP-3.18687677. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcA/gcT|p.Ala128Ala/c.384G>T|710|LOC_Os03g32630|protein_coding|CODING|LOC_Os03g32630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18691370 SNP-3.18690129. C A . . PR;EFF=intron_variant(MODIFIER|||c.75+241C>A|71|LOC_Os03g32636|protein_coding|CODING|LOC_Os03g32636.1|1|1) GT 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 1/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18691782 SNP-3.18690541. A G . . PR;EFF=intron_variant(MODIFIER|||c.76-224A>G|71|LOC_Os03g32636|protein_coding|CODING|LOC_Os03g32636.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18691986 SNP-3.18690745. C A . . PR;EFF=intron_variant(MODIFIER|||c.76-20C>A|71|LOC_Os03g32636|protein_coding|CODING|LOC_Os03g32636.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 18692796 SNP-3.18691555. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18693936 SNP-3.18692695. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 +3 18694773 SNP-3.18693532. C A . . PR;EFF=intron_variant(MODIFIER|||c.109-13G>T|111|LOC_Os03g32642|protein_coding|CODING|LOC_Os03g32642.1|1|1) GT ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 +3 18695016 SNP-3.18693775. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 +3 18697802 SNP-3.18696561. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 +3 18697909 SNP-3.18696668. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 +3 18707780 SNP-3.18706539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/1 ./. 0/1 ./. ./. 0/0 1/1 1/1 ./. 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18710665 SNP-3.18709424. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aTt|p.Thr45Ile/c.134G>T|116|LOC_Os03g32664|protein_coding|CODING|LOC_Os03g32664.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. +3 18712119 SNP-3.18710878. C A . . PR;EFF=synonymous_variant(LOW||cAg/cAg|p.Gln42Gln/c.125C>A|98|LOC_Os03g32670|protein_coding|CODING|LOC_Os03g32670.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18714288 SNP-3.18713047. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 +3 18716479 SNP-3.18715238. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18718548 SNP-3.18717307. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 +3 18721636 SNP-3.18720395. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18722594 SNP-3.18721353. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 +3 18728215 SNP-3.18726974. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18729426 SNP-3.18728185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. +3 18730511 SNP-3.18729270. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/1 ./. 1/1 1/1 ./. ./. ./. 0/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 +3 18732079 SNP-3.18730838. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTc/tAc|p.Phe291Tyr/c.872C>A|654|LOC_Os03g32690|protein_coding|CODING|LOC_Os03g32690.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 18733051 SNP-3.18731810. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acA|p.Thr544Thr/c.1632C>A|654|LOC_Os03g32690|protein_coding|CODING|LOC_Os03g32690.1|4|1) GT 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18733512 SNP-3.18732271. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 +3 18734715 SNP-3.18733474. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 +3 18739438 SNP-3.18738197. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 +3 18745988 SNP-3.18744747. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 +3 18747914 SNP-3.18746673. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 18749265 SNP-3.18748024. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGg/tCg|p.Trp262Ser/c.785T>C|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 +3 18749284 SNP-3.18748043. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aaa/Taa|p.Lys256*/c.766G>T|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18749395 SNP-3.18748154. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcg/Ccg|p.Ala219Pro/c.655T>C|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 0/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 +3 18749735 SNP-3.18748494. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccT|p.Pro138Pro/c.414G>T|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|2|1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 18750724 SNP-3.18749483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. +3 18751362 SNP-3.18750121. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agg/Tgg|p.Arg593Trp/c.1777G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18751506 SNP-3.18750265. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Tgc|p.Arg545Cys/c.1633G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18753459 SNP-3.18752218. C A . . PR;EFF=intron_variant(MODIFIER|||c.463-349G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18753953 SNP-3.18752712. C A . . PR;EFF=intron_variant(MODIFIER|||c.462+190G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18754343 SNP-3.18753102. C A . . PR;EFF=intron_variant(MODIFIER|||c.373-111G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 18755603 SNP-3.18754362. C A . . PR;EFF=synonymous_variant(LOW||aTa/aTa|p.Ile84Ile/c.251G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18758727 SNP-3.18757486. C A . . PR;EFF=intron_variant(MODIFIER|||c.157-390C>A|476|LOC_Os03g32770|protein_coding|CODING|LOC_Os03g32770.1|1|1) GT ./. 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 18759891 SNP-3.18758650. C A . . PR;EFF=synonymous_variant(LOW||Aca/Aca|p.Thr294Thr/c.880C>A|476|LOC_Os03g32770|protein_coding|CODING|LOC_Os03g32770.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 +3 18761242 SNP-3.18760001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. +3 18761440 SNP-3.18760199. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/1 ./. ./. 0/0 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 0/1 1/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 18767602 SNP-3.18766361. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18767876 SNP-3.18766635. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 18770394 SNP-3.18769153. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||209|c.*209A>G|191|LOC_Os03g32790|protein_coding|CODING|LOC_Os03g32790.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||209|c.*209A>G|191|LOC_Os03g32790|protein_coding|CODING|LOC_Os03g32790.2|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||209|c.*209A>G|150|LOC_Os03g32790|protein_coding|CODING|LOC_Os03g32790.3|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/0 ./. ./. ./. 1/1 0/1 1/1 0/1 0/1 ./. ./. 0/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 ./. 1/1 ./. 0/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/1 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 ./. ./. ./. 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 18770657 SNP-3.18769416. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18770748 SNP-3.18769507. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18771856 SNP-3.18770615. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18772680 SNP-3.18771439. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 18773308 SNP-3.18772067. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18774925 SNP-3.18773684. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 +3 18775732 SNP-3.18774491. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu25Leu/c.75C>A|162|LOC_Os03g32810|protein_coding|CODING|LOC_Os03g32810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 18775875 SNP-3.18774634. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTg/cAg|p.Leu73Gln/c.218C>A|162|LOC_Os03g32810|protein_coding|CODING|LOC_Os03g32810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 18776754 SNP-3.18775513. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. 0/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 18779415 SNP-3.18778174. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser94Ser/c.282C>A|275|LOC_Os03g32820|protein_coding|CODING|LOC_Os03g32820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 +3 18779525 SNP-3.18778284. A G . . PR;EFF=synonymous_variant(LOW||tGg/tGg|p.Trp131Trp/c.392A>G|275|LOC_Os03g32820|protein_coding|CODING|LOC_Os03g32820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 +3 18779961 SNP-3.18778720. A G . . PR;EFF=stop_retained_variant(LOW||taG/taG|p.Ter276Ter/c.828A>G|275|LOC_Os03g32820|protein_coding|CODING|LOC_Os03g32820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 +3 18784095 SNP-3.18782854. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttG/ttC|p.Leu62Phe/c.186T>C|105|LOC_Os03g32830|protein_coding|CODING|LOC_Os03g32830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 +3 18785749 SNP-3.18784508. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 +3 18786421 SNP-3.18785180. A G . . PR;EFF=synonymous_variant(LOW||acG/acG|p.Thr115Thr/c.345A>G|155|LOC_Os03g32840|protein_coding|CODING|LOC_Os03g32840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. +3 18787780 SNP-3.18786539. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 +3 18788889 SNP-3.18787648. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 +3 18789275 SNP-3.18788034. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 18791188 SNP-3.18789947. A G . . PR;EFF=intron_variant(MODIFIER|||c.121-130A>G|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|1|1) GT 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 +3 18791989 SNP-3.18790748. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp264Glu/c.792C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 18792338 SNP-3.18791097. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val367Ile/c.1099C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 +3 18792424 SNP-3.18791183. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser395Ser/c.1185C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 18792649 SNP-3.18791408. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctA|p.Leu470Leu/c.1410C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 ./. 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 +3 18792735 SNP-3.18791494. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro499Arg/c.1496A>G|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18792809 SNP-3.18791568. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val524Ile/c.1570C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 18793195 SNP-3.18791954. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys606Lys/c.1818C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18793546 SNP-3.18792305. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caA|p.His723Gln/c.2169C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|5|1) GT 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 18798137 SNP-3.18796896. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18798764 SNP-3.18797523. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 +3 18802486 SNP-3.18801245. A G . . PR;EFF=intron_variant(MODIFIER|||c.463-240T>C|397|LOC_Os03g32860|protein_coding|CODING|LOC_Os03g32860.1|2|1) GT ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. +3 18805281 SNP-3.18804040. A G . . PR;EFF=synonymous_variant(LOW||cCa/cCa|p.Pro19Pro/c.56T>C|369|LOC_Os03g32870|protein_coding|CODING|LOC_Os03g32870.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 +3 18805487 SNP-3.18804246. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 18807288 SNP-3.18806047. C A . . PR;EFF=intron_variant(MODIFIER|||c.91+214C>A|157|LOC_Os03g32880|protein_coding|CODING|LOC_Os03g32880.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. +3 18808258 SNP-3.18807017. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Atc|p.Phe135Ile/c.403C>A|157|LOC_Os03g32880|protein_coding|CODING|LOC_Os03g32880.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18808464 SNP-3.18807223. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 18808696 SNP-3.18807455. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 +3 18809082 SNP-3.18807841. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18812689 SNP-3.18811448. C A . . PR;EFF=intron_variant(MODIFIER|||c.164-18G>T|503|LOC_Os03g32890|protein_coding|CODING|LOC_Os03g32890.1|1|1) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 +3 18813873 SNP-3.18812632. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 18815144 SNP-3.18813903. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 +3 18817425 SNP-3.18816184. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. +3 18826402 SNP-3.18825161. A G . . PR;EFF=intron_variant(MODIFIER|||c.221-268T>C|403|LOC_Os03g32920|protein_coding|CODING|LOC_Os03g32920.1|1|1) GT 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. +3 18828845 SNP-3.18827604. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Acc/Tcc|p.Thr403Ser/c.1207G>T|712|LOC_Os03g32930|protein_coding|CODING|LOC_Os03g32930.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 +3 18829038 SNP-3.18827797. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctT|p.Leu338Leu/c.1014G>T|712|LOC_Os03g32930|protein_coding|CODING|LOC_Os03g32930.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. +3 18834871 SNP-3.18833630. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agt/Tgt|p.Ser240Cys/c.718G>T|586|LOC_Os03g32940|protein_coding|CODING|LOC_Os03g32940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 18834928 SNP-3.18833687. A G . . PR;EFF=synonymous_variant(LOW||Caa/Caa|p.Gln221Gln/c.661T>C|586|LOC_Os03g32940|protein_coding|CODING|LOC_Os03g32940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 +3 18835579 SNP-3.18834338. A G . . PR;EFF=intron_variant(MODIFIER|||c.354-204T>C|586|LOC_Os03g32940|protein_coding|CODING|LOC_Os03g32940.1|1|1) GT 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/1 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. ./. ./. ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/0 0/1 ./. 0/1 ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 0/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 +3 18852669 SNP-3.18851428. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggG|p.Gly396Gly/c.1188A>G|401|LOC_Os03g32970|protein_coding|CODING|LOC_Os03g32970.1|2|1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 +3 18855626 SNP-3.18854385. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18863952 SNP-3.18862711. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 18865056 SNP-3.18863815. C A . . PR;EFF=intron_variant(MODIFIER|||c.205+739C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18865076 SNP-3.18863835. A G . . PR;EFF=intron_variant(MODIFIER|||c.205+759A>G|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18865095 SNP-3.18863854. A G . . PR;EFF=intron_variant(MODIFIER|||c.205+778A>G|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 18865748 SNP-3.18864507. C A . . PR;EFF=intron_variant(MODIFIER|||c.206-189C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18866029 SNP-3.18864788. C A . . PR;EFF=synonymous_variant(LOW||Agc/Agc|p.Ser100Ser/c.298C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18866047 SNP-3.18864806. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Agt|p.Gly106Ser/c.316C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18866067 SNP-3.18864826. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr112Thr/c.336C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 +3 18866089 SNP-3.18864848. C A . . PR;EFF=synonymous_variant(LOW||Aca/Aca|p.Thr120Thr/c.358C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18866323 SNP-3.18865082. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Agc|p.Arg198Ser/c.592C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18868242 SNP-3.18867001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 18868282 SNP-3.18867041. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18868406 SNP-3.18867165. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18869491 SNP-3.18868250. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 ./. 0/1 0/0 ./. ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. +3 18869854 SNP-3.18868613. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18869855 SNP-3.18868614. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 +3 18870770 SNP-3.18869529. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18870916 SNP-3.18869675. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18870952 SNP-3.18869711. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 18871142 SNP-3.18869901. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18872231 SNP-3.18870990at. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 18872231 SNP-3.18870990ac. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 18875926 SNP-3.18874685. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18875999 SNP-3.18874758. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18880737 SNP-3.18879496. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18882188 SNP-3.18880947. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 18883386 SNP-3.18882145. C A . . PR;EFF=intron_variant(MODIFIER|||c.321+595C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18884077 SNP-3.18882836. C A . . PR;EFF=intron_variant(MODIFIER|||c.321+1286C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18884772 SNP-3.18883531. C A . . PR;EFF=intron_variant(MODIFIER|||c.321+1981C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 18887307 SNP-3.18886066. A G . . PR;EFF=intron_variant(MODIFIER|||c.322-2108A>G|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18889381 SNP-3.18888140. C A . . PR;EFF=intron_variant(MODIFIER|||c.322-34C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18891889 SNP-3.18890648. C A . . PR;EFF=intron_variant(MODIFIER|||c.1161-819C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18893246 SNP-3.18892005. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||265|c.*265C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18901067 SNP-3.18899826. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Aca|p.Ser209Thr/c.625C>A|351|LOC_Os03g33042|protein_coding|CODING|LOC_Os03g33042.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18901541 SNP-3.18900300. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 +3 18901857 SNP-3.18900616. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 ./. 0/0 1/1 1/1 0/1 0/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 18902596 SNP-3.18901355. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu179Leu/c.537A>G|209|LOC_Os03g33044|protein_coding|CODING|LOC_Os03g33044.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 +3 18919878 SNP-3.18918637. C A . . PR;EFF=intron_variant(MODIFIER|||c.378-278G>T|242|LOC_Os03g33060|protein_coding|CODING|LOC_Os03g33060.1|2|1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18921244 SNP-3.18920003. C A . . PR;EFF=intron_variant(MODIFIER|||c.207-16G>T|242|LOC_Os03g33060|protein_coding|CODING|LOC_Os03g33060.1|1|1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 18922800 SNP-3.18921559. C A . . PR;EFF=synonymous_variant(LOW||aTt/aTt|p.Ile110Ile/c.329G>T|189|LOC_Os03g33070|protein_coding|CODING|LOC_Os03g33070.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 +3 18923292 SNP-3.18922051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18923377 SNP-3.18922136. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 +3 18923502 SNP-3.18922261. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18924201 SNP-3.18922960. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 +3 18925620 SNP-3.18924379. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 +3 18926620 SNP-3.18925379. C A . . PR;EFF=synonymous_variant(LOW||aTa/aTa|p.Ile786Ile/c.2357G>T|819|LOC_Os03g33080|protein_coding|CODING|LOC_Os03g33080.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 18929154 SNP-3.18927913. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gta/Cta|p.Val20Leu/c.58T>C|819|LOC_Os03g33080|protein_coding|CODING|LOC_Os03g33080.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 +3 18929968 SNP-3.18928727. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 1/1 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/1 ./. 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/1 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18930411 SNP-3.18929170. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18930486 SNP-3.18929245. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 +3 18930903 SNP-3.18929662. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18932532 SNP-3.18931291. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18934236 SNP-3.18932995. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18937085 SNP-3.18935844. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. +3 18937985 SNP-3.18936744. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aat/Cat|p.Asn1224His/c.3670T>C|1370|LOC_Os03g33100|protein_coding|CODING|LOC_Os03g33100.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18939087 SNP-3.18937846. C A . . PR;EFF=synonymous_variant(LOW||gTt/gTt|p.Val928Val/c.2783G>T|1370|LOC_Os03g33100|protein_coding|CODING|LOC_Os03g33100.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 18939114 SNP-3.18937873. C A . . PR;EFF=synonymous_variant(LOW||gTc/gTc|p.Val919Val/c.2756G>T|1370|LOC_Os03g33100|protein_coding|CODING|LOC_Os03g33100.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18948677 SNP-3.18947436. C A . . PR;EFF=intron_variant(MODIFIER|||c.101-230C>A|370|LOC_Os03g33110|protein_coding|CODING|LOC_Os03g33110.1|1|1) GT 0/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 +3 18948838 SNP-3.18947597. C A . . PR;EFF=intron_variant(MODIFIER|||c.101-69C>A|370|LOC_Os03g33110|protein_coding|CODING|LOC_Os03g33110.1|1|1) GT 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 +3 18950066 SNP-3.18948825. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcG/gcA|p.Ala351Ala/c.1053C>A|370|LOC_Os03g33110|protein_coding|CODING|LOC_Os03g33110.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 +3 18950548 SNP-3.18949307. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 +3 18950913 SNP-3.18949672. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 +3 18964247 SNP-3.18963006. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18967087 SNP-3.18965846. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Cca|p.Ala382Pro/c.1144T>C|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. +3 18967396 SNP-3.18966155. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaA/aaC|p.Lys297Asn/c.891T>C|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 18967417 SNP-3.18966176. A G . . PR;EFF=synonymous_variant(LOW||aaC/aaC|p.Asn290Asn/c.870T>C|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 +3 18968191 SNP-3.18966950. C A . . PR;EFF=synonymous_variant(LOW||aTa/aTa|p.Ile92Ile/c.275G>T|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 18986724 SNP-3.18985483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18987135 SNP-3.18985894. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aga/Tga|p.Arg409*/c.1225G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 +3 18988598 SNP-3.18987357. C A . . PR;EFF=splice_region_variant(LOW|||c.821G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gTc/gTc|p.Val274Val/c.821G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18988892 SNP-3.18987651. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cTt|p.His176Leu/c.527G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 18988967 SNP-3.18987726. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGg/tTg|p.Trp151Leu/c.452G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1) GT ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 +3 18988984 SNP-3.18987743. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcT|p.Ser145Ser/c.435G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 1/1 0/1 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18989003 SNP-3.18987762. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gTg|p.Ala139Val/c.416G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 +3 18989771 SNP-3.18988530. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18990208 SNP-3.18988967. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tAc/tTc|p.Tyr228Phe/c.683G>T|236|LOC_Os03g33200|protein_coding|CODING|LOC_Os03g33200.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18990589 SNP-3.18989348. C A . . PR;EFF=synonymous_variant(LOW||gTa/gTa|p.Val101Val/c.302G>T|236|LOC_Os03g33200|protein_coding|CODING|LOC_Os03g33200.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 18991158 SNP-3.18989917. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 18993950 SNP-3.18992709. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 18994468 SNP-3.18993227. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCc/aAc|p.Thr108Asn/c.323C>A|736|LOC_Os03g33220|protein_coding|CODING|LOC_Os03g33220.1|1|1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19000902 SNP-3.18999661. C A . . PR;EFF=synonymous_variant(LOW|SILENT|Ctg/Ttg|p.Leu905Leu/c.2713G>T|1631|LOC_Os03g33230|protein_coding|CODING|LOC_Os03g33230.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. +3 19011011 SNP-3.19009770. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 19015538 SNP-3.19014297. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 19016872 SNP-3.19015631. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19017621 SNP-3.19016380. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe82Leu/c.246C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19018686 SNP-3.19017445. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Att/Gtt|p.Ile358Val/c.1072A>G|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1) GT 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 19018989 SNP-3.19017748. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ccg/Acg|p.Pro459Thr/c.1375C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19019053 SNP-3.19017812. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cAt|p.Pro480His/c.1439C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19019327 SNP-3.19018086. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu571Leu/c.1713C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19019901 SNP-3.19018660. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cca/Aca|p.Pro698Thr/c.2092C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19020214 SNP-3.19018973. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 19021018 SNP-3.19019777. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtA/gtT|p.Val832Val/c.2496G>T|839|LOC_Os03g33250|protein_coding|CODING|LOC_Os03g33250.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 +3 19021276 SNP-3.19020035. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttA/ttC|p.Leu746Phe/c.2238T>C|839|LOC_Os03g33250|protein_coding|CODING|LOC_Os03g33250.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 +3 19022831 SNP-3.19021590. C A . . PR;EFF=synonymous_variant(LOW||ttT/ttT|p.Phe272Phe/c.816G>T|839|LOC_Os03g33250|protein_coding|CODING|LOC_Os03g33250.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19029066 SNP-3.19027825. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Cca|p.Ser223Pro/c.667T>C|600|LOC_Os03g33260|protein_coding|CODING|LOC_Os03g33260.1|1|1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 +3 19033441 SNP-3.19032200. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19033520 SNP-3.19032279. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. +3 19034694 SNP-3.19033453. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTg/cGg|p.Leu95Arg/c.284A>G|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 +3 19034859 SNP-3.19033618. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTc/tAc|p.Phe150Tyr/c.449C>A|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 +3 19038189 SNP-3.19036948. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu1058Leu/c.3174A>G|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 19038303 SNP-3.19037062. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccA|p.Pro1096Pro/c.3288C>A|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 +3 19039014 SNP-3.19037773. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 +3 19041315 SNP-3.19040074. C A . . PR;EFF=intron_variant(MODIFIER|||c.1120-124G>T|651|LOC_Os03g33290|protein_coding|CODING|LOC_Os03g33290.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19043574 SNP-3.19042333. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aAg|p.Met29Lys/c.86C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19044516 SNP-3.19043275. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acG|p.Thr256Thr/c.768A>G|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19045129 SNP-3.19043888. C A . . PR;EFF=intron_variant(MODIFIER|||c.836+545C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19046131 SNP-3.19044890. A G . . PR;EFF=intron_variant(MODIFIER|||c.837-65A>G|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|3|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19046856 SNP-3.19045615. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|taC/taA|p.Tyr449*/c.1347C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|5|1);LOF=(LOC_Os03g33300|LOC_Os03g33300|1|1.00);NMD=(LOC_Os03g33300|LOC_Os03g33300|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19046904 SNP-3.19045663. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val465Val/c.1395A>G|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 +3 19046950 SNP-3.19045709. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcc/Acc|p.Ala481Thr/c.1441C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19049058 SNP-3.19047817. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Aca|p.Ala689Thr/c.2065C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19049571 SNP-3.19048330. C A . . PR;EFF=synonymous_variant(LOW||Ata/Ata|p.Ile860Ile/c.2578C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19050988 SNP-3.19049747. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgg/Agg|p.Trp1116Arg/c.3346C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19052901 SNP-3.19051660. C A . . PR;EFF=synonymous_variant(LOW||cAa/cAa|p.Gln154Gln/c.461C>A|215|LOC_Os03g33310|protein_coding|CODING|LOC_Os03g33310.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. ./. 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19053056 SNP-3.19051815. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly206Gly/c.616A>G|215|LOC_Os03g33310|protein_coding|CODING|LOC_Os03g33310.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19062082 SNP-3.19060841. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgt/Agt|p.Cys716Ser/c.2146C>A|1031|LOC_Os03g33328|protein_coding|CODING|LOC_Os03g33328.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19065499 SNP-3.19064258. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19065690 SNP-3.19064449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19076909 SNP-3.19075668. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aAg|p.Thr360Lys/c.1079C>A|442|LOC_Os03g33360|protein_coding|CODING|LOC_Os03g33360.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 19077956 SNP-3.19076715. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 +3 19079194 SNP-3.19077953. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Ggc|p.Arg6Gly/c.16A>G|415|LOC_Os03g33370|protein_coding|CODING|LOC_Os03g33370.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 +3 19085363 SNP-3.19084122. A G . . PR;EFF=intron_variant(MODIFIER|||c.226+776A>G|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 19086741 SNP-3.19085500. A G . . PR;EFF=intron_variant(MODIFIER|||c.227-226A>G|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|1|1) GT ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 +3 19087267 SNP-3.19086026. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cGt|p.His176Arg/c.527A>G|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 19087338 SNP-3.19086097. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu200Met/c.598C>A|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|2|1) GT 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 +3 19087621 SNP-3.19086380. C A . . PR;EFF=synonymous_variant(LOW||aAc/aAc|p.Asn294Asn/c.881C>A|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 +3 19089509 SNP-3.19088268. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. +3 19092918 SNP-3.19091677. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 +3 19095009 SNP-3.19093768. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 19096319 SNP-3.19095078. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19097885 SNP-3.19096644. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gga/Cga|p.Gly70Arg/c.208T>C|198|LOC_Os03g33400|protein_coding|CODING|LOC_Os03g33400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. +3 19097980 SNP-3.19096739. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gCa|p.Gly38Ala/c.113T>C|198|LOC_Os03g33400|protein_coding|CODING|LOC_Os03g33400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 +3 19103719 SNP-3.19102478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 +3 19104084 SNP-3.19102843. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. +3 19104548 SNP-3.19103307. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctA|p.Leu44Leu/c.132C>A|190|LOC_Os03g33430|protein_coding|CODING|LOC_Os03g33430.1|1|1) GT ./. 1/1 0/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 19105632 SNP-3.19104391. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19107776 SNP-3.19106535. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19107792 SNP-3.19106551. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19110031 SNP-3.19108790. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 +3 19111719 SNP-3.19110478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 19112213 SNP-3.19110972. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 +3 19113142 SNP-3.19111901. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.293C>A|147|LOC_Os03g33450|protein_coding|CODING|LOC_Os03g33450.1|3|1),intron_variant(MODIFIER|||c.293-1C>A|147|LOC_Os03g33450|protein_coding|CODING|LOC_Os03g33450.1|2|1);LOF=(LOC_Os03g33450|LOC_Os03g33450|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19113904 SNP-3.19112663. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19114865 SNP-3.19113624. C A . . PR;EFF=splice_region_variant(LOW|||c.873G>T|487|LOC_Os03g33460|protein_coding|CODING|LOC_Os03g33460.1|6|1),intron_variant(MODIFIER|||c.873-7G>T|487|LOC_Os03g33460|protein_coding|CODING|LOC_Os03g33460.1|6|1) GT 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19116045 SNP-3.19114804. C A . . PR;EFF=synonymous_variant(LOW||aTg/aTg|p.Met229Met/c.686G>T|487|LOC_Os03g33460|protein_coding|CODING|LOC_Os03g33460.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19119983 SNP-3.19118742. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 +3 19120835 SNP-3.19119594. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19120968 SNP-3.19119727. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/1 ./. ./. 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 +3 19123027 SNP-3.19121786. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 +3 19123074 SNP-3.19121833. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 +3 19124647 SNP-3.19123406. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 +3 19125149 SNP-3.19123908. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19127054 SNP-3.19125813. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. +3 19127791 SNP-3.19126550. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Gtg|p.Leu134Val/c.400A>G|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 +3 19127952 SNP-3.19126711. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taG|p.Tyr187*/c.561A>G|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19128108 SNP-3.19126867. C A . . PR;EFF=synonymous_variant(LOW||aaA/aaA|p.Lys239Lys/c.717C>A|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 +3 19128197 SNP-3.19126956. C A . . PR;EFF=stop_retained_variant(LOW||tAg/tAg|p.Ter269Ter/c.806C>A|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 19128237 SNP-3.19126996. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 +3 19128315 SNP-3.19127074. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19129577 SNP-3.19128336. C A . . PR;EFF=splice_region_variant(LOW|||c.201G>T|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acA/acT|p.Thr67Thr/c.201G>T|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 +3 19129604 SNP-3.19128363. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctT|p.Leu58Leu/c.174G>T|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 0/0 +3 19129676 SNP-3.19128435. A G . . PR;EFF=synonymous_variant(LOW||ctC/ctC|p.Leu34Leu/c.102T>C|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19130100 SNP-3.19128859. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19130299 SNP-3.19129058. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19133639 SNP-3.19132398. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 +3 19136653 SNP-3.19135412. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19136855 SNP-3.19135614. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 +3 19137832 SNP-3.19136591. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19138983 SNP-3.19137742. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19139036 SNP-3.19137795. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. +3 19139491 SNP-3.19138250. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 +3 19142199 SNP-3.19140958. C A . . PR;EFF=intron_variant(MODIFIER|||c.406+192G>T|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19142346 SNP-3.19141105. C A . . PR;EFF=intron_variant(MODIFIER|||c.406+45G>T|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19142467 SNP-3.19141226. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccA/ccT|p.Pro110Pro/c.330G>T|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19142663 SNP-3.19141422. A G . . PR;EFF=synonymous_variant(LOW||aCa/aCa|p.Thr45Thr/c.134T>C|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/1 1/1 +3 19144676 SNP-3.19143435. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19145269 SNP-3.19144028. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gAg|p.Ala37Glu/c.110C>A|50|LOC_Os03g33509|protein_coding|CODING|LOC_Os03g33509.1|1|1),splice_region_variant(LOW|||c.110C>A|50|LOC_Os03g33509|protein_coding|CODING|LOC_Os03g33509.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19145523 SNP-3.19144282. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 +3 19146331 SNP-3.19145090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19149086 SNP-3.19147845. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 +3 19149479 SNP-3.19148238. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 ./. 0/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/0 1/1 0/0 +3 19149706 SNP-3.19148465. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 +3 19151296 SNP-3.19150055. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19156140 SNP-3.19154899. A G . . PR;EFF=synonymous_variant(LOW|SILENT|caT/caC|p.His1399His/c.4197T>C|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|3|1) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19158048 SNP-3.19156807. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Tct|p.Pro812Ser/c.2434G>T|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19158432 SNP-3.19157191. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.2052G>T|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|2|1),intron_variant(MODIFIER|||c.2052-2G>T|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|1|1);LOF=(LOC_Os03g33530|LOC_Os03g33530|1|1.00) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19165258 SNP-3.19164017. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 +3 19165316 SNP-3.19164075. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 +3 19169014 SNP-3.19167773. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. +3 19172308 SNP-3.19171067. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. +3 19177904 SNP-3.19176663. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 +3 19178113 SNP-3.19176872. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 +3 19178400 SNP-3.19177159. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 +3 19178485 SNP-3.19177244. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19178506 SNP-3.19177265. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 +3 19181841 SNP-3.19180600. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19181864 SNP-3.19180623. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 1/1 ./. 1/1 0/1 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 +3 19193977 SNP-3.19192736. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/1 ./. 0/1 0/0 1/1 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 +3 19194196 SNP-3.19192955. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19194737 SNP-3.19193496. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19198829 SNP-3.19197588. A G . . PR;EFF=intron_variant(MODIFIER|||c.1222-611T>C|448|LOC_Os03g33590|protein_coding|CODING|LOC_Os03g33590.1|11|1),intron_variant(MODIFIER|||c.1222-611T>C|440|LOC_Os03g33590|protein_coding|CODING|LOC_Os03g33590.2|11|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 +3 19204549 SNP-3.19203308. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19207080 SNP-3.19205839. C A . . PR;EFF=intron_variant(MODIFIER|||c.219-95G>T|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 +3 19207198 SNP-3.19205957. A G . . PR;EFF=intron_variant(MODIFIER|||c.219-213T>C|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT ./. 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 19207283 SNP-3.19206042. C A . . PR;EFF=intron_variant(MODIFIER|||c.219-298G>T|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19207843 SNP-3.19206602. C A . . PR;EFF=intron_variant(MODIFIER|||c.218+338G>T|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19210587 SNP-3.19209346. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19213861 SNP-3.19212620. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 1/1 +3 19214991 SNP-3.19213750. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 +3 19217756 SNP-3.19216515. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19217918 SNP-3.19216677. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 +3 19218405 SNP-3.19217164. C A . . PR;EFF=stop_lost(HIGH|MISSENSE|tAg/tTg|p.Ter122Leuext*?/c.365G>T|121|LOC_Os03g33620|protein_coding|CODING|LOC_Os03g33620.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 19218540 SNP-3.19217299. C A . . PR;EFF=synonymous_variant(LOW||aTg/aTg|p.Met77Met/c.230G>T|121|LOC_Os03g33620|protein_coding|CODING|LOC_Os03g33620.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19222783 SNP-3.19221542. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19223361 SNP-3.19222120. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. +3 19225307 SNP-3.19224066. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19238836 SNP-3.19237595. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19238905 SNP-3.19237664. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19241250 SNP-3.19240009. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19243170 SNP-3.19241929. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 +3 19243554 SNP-3.19242313. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19246770 SNP-3.19245529. A G . . PR;EFF=synonymous_variant(LOW||tcG/tcG|p.Ser585Ser/c.1755A>G|1048|LOC_Os03g33650|protein_coding|CODING|LOC_Os03g33650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19247694 SNP-3.19246453. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccA|p.Pro893Pro/c.2679C>A|1048|LOC_Os03g33650|protein_coding|CODING|LOC_Os03g33650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19247862 SNP-3.19246621. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu949Leu/c.2847C>A|1048|LOC_Os03g33650|protein_coding|CODING|LOC_Os03g33650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19248594 SNP-3.19247353. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19248842 SNP-3.19247601. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19248864 SNP-3.19247623. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19248886 SNP-3.19247645. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19251900 SNP-3.19250659. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 +3 19251932 SNP-3.19250691. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 +3 19252276 SNP-3.19251035. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 +3 19253417 SNP-3.19252176. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/1 ./. 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 +3 19256045 SNP-3.19254804. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19257814 SNP-3.19256573. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val15Gly/c.44A>G|356|LOC_Os03g33670|protein_coding|CODING|LOC_Os03g33670.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 19258481 SNP-3.19257240. C A . . PR;EFF=intron_variant(MODIFIER|||c.626-50C>A|356|LOC_Os03g33670|protein_coding|CODING|LOC_Os03g33670.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19264529 SNP-3.19263288. A G . . PR;EFF=intron_variant(MODIFIER|||c.1340+59A>G|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|4|1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19265090 SNP-3.19263849. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu573Leu/c.1719C>A|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19266201 SNP-3.19264960. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp905Glu/c.2715A>G|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/1 0/1 ./. ./. ./. 0/1 ./. 0/1 0/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19266413 SNP-3.19265172. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val976Glu/c.2927C>A|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 +3 19266618 SNP-3.19265377. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggT/ggA|p.Gly1044Gly/c.3132C>A|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/1 0/0 ./. ./. 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19271202 SNP-3.19269961. C A . . PR;EFF=splice_region_variant(LOW|||c.2116C>A|749|LOC_Os03g33690|protein_coding|CODING|LOC_Os03g33690.1|6|1),synonymous_variant(LOW|SILENT|Cgg/Agg|p.Arg706Arg/c.2116C>A|749|LOC_Os03g33690|protein_coding|CODING|LOC_Os03g33690.1|6|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 +3 19273141 SNP-3.19271900. C A . . PR;EFF=synonymous_variant(LOW||ctT/ctT|p.Leu365Leu/c.1095G>T|606|LOC_Os03g33700|protein_coding|CODING|LOC_Os03g33700.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 +3 19281719 SNP-3.19280478. C A . . PR;EFF=intron_variant(MODIFIER|||c.51+15G>T|699|LOC_Os03g33730|protein_coding|CODING|LOC_Os03g33730.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/1 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 +3 19282070 SNP-3.19280829. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 0/1 ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 +3 19283750 SNP-3.19282509. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19284115 SNP-3.19282874. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 19284183 SNP-3.19282942. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 +3 19284232 SNP-3.19282991. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 19287495 SNP-3.19286254. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly6Glu/c.17C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.17C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19287814 SNP-3.19286573. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys73Lys/c.217C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 +3 19288045 SNP-3.19286804. C A . . PR;EFF=synonymous_variant(LOW||Agt/Agt|p.Ser150Ser/c.448C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19288594 SNP-3.19287353. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cAg|p.Pro275Gln/c.824C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19289149 SNP-3.19287908. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aAa|p.Thr434Lys/c.1301C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 +3 19289418 SNP-3.19288177. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Aat|p.His524Asn/c.1570C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|4|1) GT 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 +3 19289684 SNP-3.19288443. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaG|p.Asn560Lys/c.1680A>G|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. +3 19292046 SNP-3.19290805. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19294696 SNP-3.19293206. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tAt|p.Ser119Tyr/c.356C>A|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|2|1) GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19295568 SNP-3.19294078. C A . . PR;EFF=intron_variant(MODIFIER|||c.876+352C>A|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|2|1) GT 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. +3 19296252 SNP-3.19294762. A G . . PR;EFF=splice_donor_variant(HIGH|||c.910A>G|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|3|1),intron_variant(MODIFIER|||c.909+1A>G|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|3|1);LOF=(LOC_Os03g33750|LOC_Os03g33750|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19296949 SNP-3.19295459. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 19297394 SNP-3.19295904. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 19301555 SNP-3.19300065. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val773Glu/c.2318C>A|1535|LOC_Os03g33760|protein_coding|CODING|LOC_Os03g33760.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19302439 SNP-3.19300949. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys989Lys/c.2965C>A|1535|LOC_Os03g33760|protein_coding|CODING|LOC_Os03g33760.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 +3 19309647 SNP-3.19308157. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 +3 19315968 SNP-3.19314478. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgc/Agc|p.Cys170Ser/c.508C>A|282|LOC_Os03g33790|protein_coding|CODING|LOC_Os03g33790.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19316683 SNP-3.19315193. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19317266 SNP-3.19315776. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 19317544 SNP-3.19316054. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19318627 SNP-3.19317137. C A . . PR;EFF=intron_variant(MODIFIER|||c.343+98G>T|122|LOC_Os03g33800|protein_coding|CODING|LOC_Os03g33800.1|1|1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 19318755 SNP-3.19317265. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Cca|p.Thr105Pro/c.313T>C|122|LOC_Os03g33800|protein_coding|CODING|LOC_Os03g33800.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 19321635 SNP-3.19320145. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caA/caT|p.Gln135His/c.405G>T|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19321748 SNP-3.19320258. C A . . PR;EFF=synonymous_variant(LOW||Tgc/Tgc|p.Cys98Cys/c.292G>T|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 +3 19321768 SNP-3.19320278. C A . . PR;EFF=synonymous_variant(LOW||gTt/gTt|p.Val91Val/c.272G>T|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19321908 SNP-3.19320418. A G . . PR;EFF=synonymous_variant(LOW||atC/atC|p.Ile44Ile/c.132T>C|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 +3 19322247 SNP-3.19320757. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 19323330 SNP-3.19321840. C A . . PR;EFF=stop_retained_variant(LOW||Taa/Taa|p.Ter901Ter/c.2701G>T|900|LOC_Os03g33819|protein_coding|CODING|LOC_Os03g33819.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19325067 SNP-3.19323577. A G . . PR;EFF=synonymous_variant(LOW||gCa/gCa|p.Ala337Ala/c.1010T>C|900|LOC_Os03g33819|protein_coding|CODING|LOC_Os03g33819.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 +3 19330460 SNP-3.19328970. A G . . PR;EFF=intron_variant(MODIFIER|||c.763-124T>C|483|LOC_Os03g33828|protein_coding|CODING|LOC_Os03g33828.1|3|1) GT 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 +3 19339191 SNP-3.19337701. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 +3 19340848 SNP-3.19339358. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His43His/c.128C>A|380|LOC_Os03g33860|protein_coding|CODING|LOC_Os03g33860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19341601 SNP-3.19340111. A G . . PR;EFF=synonymous_variant(LOW||cGc/cGc|p.Arg294Arg/c.881A>G|380|LOC_Os03g33860|protein_coding|CODING|LOC_Os03g33860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 +3 19350828 SNP-3.19349338. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Cct|p.Ala199Pro/c.595T>C|240|LOC_Os03g33890|protein_coding|CODING|LOC_Os03g33890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 +3 19351341 SNP-3.19349851. C A . . PR;EFF=intron_variant(MODIFIER|||c.158-76G>T|240|LOC_Os03g33890|protein_coding|CODING|LOC_Os03g33890.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19352903 SNP-3.19351413. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19353261 SNP-3.19351771. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Cga/Tga|p.Arg364*/c.1090G>T|475|LOC_Os03g33900|protein_coding|CODING|LOC_Os03g33900.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. +3 19354321 SNP-3.19352831. C A . . PR;EFF=synonymous_variant(LOW||gaT/gaT|p.Asp170Asp/c.510G>T|475|LOC_Os03g33900|protein_coding|CODING|LOC_Os03g33900.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. +3 19354906 SNP-3.19353416. C A . . PR;EFF=intron_variant(MODIFIER|||c.292-26G>T|475|LOC_Os03g33900|protein_coding|CODING|LOC_Os03g33900.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 +3 19356291 SNP-3.19354801. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19365137 SNP-3.19363647. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19365516 SNP-3.19364026. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19365823 SNP-3.19364333. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19366033 SNP-3.19364543. A G . . PR;EFF=synonymous_variant(LOW||gtC/gtC|p.Val250Val/c.750T>C|278|LOC_Os03g33930|protein_coding|CODING|LOC_Os03g33930.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19367600 SNP-3.19366110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19368394 SNP-3.19366904. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19368681 SNP-3.19367191. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aac/Tac|p.Asn1039Tyr/c.3115G>T|1115|LOC_Os03g33940|protein_coding|CODING|LOC_Os03g33940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 +3 19368705 SNP-3.19367215. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gaa/Taa|p.Glu1031*/c.3091G>T|1115|LOC_Os03g33940|protein_coding|CODING|LOC_Os03g33940.1|3|1) GT ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19369044 SNP-3.19367554. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgg/Tgg|p.Arg918Trp/c.2752G>T|1115|LOC_Os03g33940|protein_coding|CODING|LOC_Os03g33940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19376452 SNP-3.19374962. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/0 +3 19382095 SNP-3.19380605. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19390968 SNP-3.19389478. A G . . PR;EFF=intron_variant(MODIFIER|||c.187+961A>G|88|LOC_Os03g33980|protein_coding|CODING|LOC_Os03g33980.1|1|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. +3 19404735 SNP-3.19403245. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 +3 19404760 SNP-3.19403270. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 +3 19405421 SNP-3.19403931. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 +3 19407854 SNP-3.19406364. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 +3 19408391 SNP-3.19406901. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg47Arg/c.140A>G|190|LOC_Os03g34020|protein_coding|CODING|LOC_Os03g34020.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19409064 SNP-3.19407574. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 ./. 0/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19409221 SNP-3.19407731. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19412162 SNP-3.19410672. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19414835 SNP-3.19413345. C A . . PR;EFF=intron_variant(MODIFIER|||c.732-1306G>T|326|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.1|1|1),intron_variant(MODIFIER|||c.615-1306G>T|287|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.2|2|1),intron_variant(MODIFIER|||c.732-466G>T|272|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.3|1|1) GT 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 +3 19415864 SNP-3.19414374. A G . . PR;EFF=intron_variant(MODIFIER|||c.731+444T>C|326|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.1|1|1),intron_variant(MODIFIER|||c.614+444T>C|287|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.2|2|1),intron_variant(MODIFIER|||c.731+444T>C|272|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.3|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19417157 SNP-3.19415667. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19417344 SNP-3.19415854. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 +3 19420407 SNP-3.19418917. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19422085 SNP-3.19420595. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp193Glu/c.579A>G|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19422174 SNP-3.19420684. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.616C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|3|1),intron_variant(MODIFIER|||c.616-2C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|2|1);LOF=(LOC_Os03g34070|LOC_Os03g34070|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 +3 19422218 SNP-3.19420728. C A . . PR;EFF=synonymous_variant(LOW||Aac/Aac|p.Asn220Asn/c.658C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19422797 SNP-3.19421307. C A . . PR;EFF=intron_variant(MODIFIER|||c.934+146C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19425823 SNP-3.19424333. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19425921 SNP-3.19424431. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. +3 19426001 SNP-3.19424511. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 19426360 SNP-3.19424870. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19426735 SNP-3.19425245. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcA|p.Ser35Ser/c.105C>A|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19426905 SNP-3.19425415. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGg/aAg|p.Arg92Lys/c.275C>A|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19427164 SNP-3.19425674. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro178Pro/c.534A>G|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19427190 SNP-3.19425700. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cAt|p.Arg187His/c.560C>A|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 +3 19432253 SNP-3.19430763. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. +3 19434788 SNP-3.19433298. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19435700 SNP-3.19434210. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19435878 SNP-3.19434388. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 19436097 SNP-3.19434607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19437591 SNP-3.19436101. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19439640 SNP-3.19438150. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19448247 SNP-3.19446757. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His30Leu/c.89G>T|404|LOC_Os03g34140|protein_coding|CODING|LOC_Os03g34140.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19450614 SNP-3.19449124. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 0/0 1/1 +3 19452826 SNP-3.19451336. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcA|p.Ala127Ala/c.381C>A|314|LOC_Os03g34150|protein_coding|CODING|LOC_Os03g34150.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 +3 19452836 SNP-3.19451346. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Atc|p.Val131Ile/c.391C>A|314|LOC_Os03g34150|protein_coding|CODING|LOC_Os03g34150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19453291 SNP-3.19451801. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaA|p.Asp282Glu/c.846C>A|314|LOC_Os03g34150|protein_coding|CODING|LOC_Os03g34150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19453506 SNP-3.19452016. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19454317 SNP-3.19452827. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19454570 SNP-3.19453080. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGg/tCg|p.Trp70Ser/c.209T>C|80|LOC_Os03g34160|protein_coding|CODING|LOC_Os03g34160.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19458144 SNP-3.19456654. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gga/Tga|p.Gly360*/c.1078G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19458371 SNP-3.19456881. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.853G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|2|1),intron_variant(MODIFIER|||c.853-2G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1);LOF=(LOC_Os03g34170|LOC_Os03g34170|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19459022 SNP-3.19457532. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGc/aCc|p.Ser283Thr/c.848T>C|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 +3 19459428 SNP-3.19457938. C A . . PR;EFF=synonymous_variant(LOW||Tat/Tat|p.Tyr148Tyr/c.442G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19459557 SNP-3.19458067. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Ctc|p.Val105Leu/c.313T>C|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 +3 19459649 SNP-3.19458159. C A . . PR;EFF=synonymous_variant(LOW||aTt/aTt|p.Ile74Ile/c.221G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19460831 SNP-3.19459341. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19461049 SNP-3.19459559. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 +3 19462836 SNP-3.19461346. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys181Lys/c.543C>A|285|LOC_Os03g34180|protein_coding|CODING|LOC_Os03g34180.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19463025 SNP-3.19461535. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe244Leu/c.732C>A|285|LOC_Os03g34180|protein_coding|CODING|LOC_Os03g34180.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19463104 SNP-3.19461614. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys271Glu/c.811A>G|285|LOC_Os03g34180|protein_coding|CODING|LOC_Os03g34180.1|5|1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19476117 SNP-3.19474627. C A . . PR;EFF=intron_variant(MODIFIER|||c.436+118C>A|313|LOC_Os03g34200|protein_coding|CODING|LOC_Os03g34200.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19477391 SNP-3.19475901. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19478609 SNP-3.19477119. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 +3 19480097 SNP-3.19478607. C A . . PR;EFF=intron_variant(MODIFIER|||c.355+468C>A|401|LOC_Os03g34210|protein_coding|CODING|LOC_Os03g34210.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 +3 19482708 SNP-3.19481218. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 ./. ./. ./. 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 +3 19483515 SNP-3.19482025. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19483872 SNP-3.19482382. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19483955 SNP-3.19482465. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 +3 19484593 SNP-3.19483103. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. +3 19485735 SNP-3.19484245. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19486781 SNP-3.19485291. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19488301 SNP-3.19486811. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19488438 SNP-3.19486948. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19488488 SNP-3.19486998. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19490479 SNP-3.19488989. C A . . PR;EFF=intron_variant(MODIFIER|||c.240+14G>T|433|LOC_Os03g34220|protein_coding|CODING|LOC_Os03g34220.1|2|1) GT ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19491182 SNP-3.19489692. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 +3 19491464 SNP-3.19489974. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19491625 SNP-3.19490135. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 +3 19497929 SNP-3.19496439. C A . . PR;EFF=intron_variant(MODIFIER|||c.2070+30C>A|908|LOC_Os03g34240|protein_coding|CODING|LOC_Os03g34240.1|1|1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 +3 19508441 SNP-3.19506951. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Tgc|p.Arg527Cys/c.1579G>T|931|LOC_Os03g34270|protein_coding|CODING|LOC_Os03g34270.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19511582 SNP-3.19510092. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 +3 19516921 SNP-3.19515431. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gag/Tag|p.Glu89*/c.265G>T|176|LOC_Os03g34290|protein_coding|CODING|LOC_Os03g34290.1|2|1),splice_region_variant(LOW|||c.265G>T|176|LOC_Os03g34290|protein_coding|CODING|LOC_Os03g34290.1|2|1);LOF=(LOC_Os03g34290|LOC_Os03g34290|1|1.00);NMD=(LOC_Os03g34290|LOC_Os03g34290|1|1.00) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 +3 19517647 SNP-3.19516157. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 +3 19517760 SNP-3.19516270. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19518179 SNP-3.19516689. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. +3 19518782 SNP-3.19517292. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19525732 SNP-3.19524242. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ata/Tta|p.Ile44Leu/c.130G>T|417|LOC_Os03g34300|protein_coding|CODING|LOC_Os03g34300.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Ata/Tta|p.Ile44Leu/c.130G>T|372|LOC_Os03g34300|protein_coding|CODING|LOC_Os03g34300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 19526547 SNP-3.19525057. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 +3 19526749 SNP-3.19525259. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19529334 SNP-3.19527844. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||772|c.*772A>G|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||226|c.*226A>G|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.417-61A>G|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|1|1),intron_variant(MODIFIER|||c.417-61A>G|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|1|1),intron_variant(MODIFIER|||c.460-61A>G|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|2|1),intron_variant(MODIFIER|||c.460-61A>G|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|2|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19530150 SNP-3.19528660. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1588|c.*1588C>A|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|1|1),3_prime_UTR_variant(MODIFIER||1042|c.*1042C>A|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|2|1),3_prime_UTR_variant(MODIFIER||629|c.*629C>A|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|2|1),3_prime_UTR_variant(MODIFIER||447|c.*447C>A|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|3|1),3_prime_UTR_variant(MODIFIER||80|c.*80C>A|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|3|1),3_prime_UTR_variant(MODIFIER||39|c.*39C>A|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|4|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19530426 SNP-3.19528936. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1864|c.*1864C>A|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.*549+174C>A|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|3|1),intron_variant(MODIFIER|||c.*141+174C>A|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|4|1),intron_variant(MODIFIER|||c.*731+174C>A|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|2|1),intron_variant(MODIFIER|||c.*1144+174C>A|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|2|1),intron_variant(MODIFIER|||c.*182+174C>A|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|3|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19531487 SNP-3.19529997. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||2925|c.*2673A>G|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|2|1),3_prime_UTR_variant(MODIFIER||1784|c.*1001A>G|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|6|1),3_prime_UTR_variant(MODIFIER||1376|c.*593A>G|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|7|1),3_prime_UTR_variant(MODIFIER||1966|c.*1183A>G|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|5|1),3_prime_UTR_variant(MODIFIER||2379|c.*1596A>G|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|5|1),3_prime_UTR_variant(MODIFIER||1417|c.*634A>G|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19531818 SNP-3.19530328. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19532303 SNP-3.19530813. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 19532340 SNP-3.19530850. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 +3 19532597 SNP-3.19531107. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 1/1 ./. 0/1 ./. ./. ./. ./. ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 1/1 +3 19536512 SNP-3.19535022. C A . . PR;EFF=intron_variant(MODIFIER|||c.354+12G>T|469|LOC_Os03g34320|protein_coding|CODING|LOC_Os03g34320.1|2|1) GT ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19538465 SNP-3.19536975. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19543078 SNP-3.19541588. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19570108 SNP-3.19568618. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ttC/ttT|p.Phe113Phe/c.339G>T|540|LOC_Os03g35330|protein_coding|CODING|LOC_Os03g35330.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19580263 SNP-3.19578773. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 +3 19580733 SNP-3.19579243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19581039 SNP-3.19579549. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 +3 19587166 SNP-3.19585676. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cTt|p.Arg1787Leu/c.5360G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|26|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19588936 SNP-3.19587446. C A . . PR;EFF=intron_variant(MODIFIER|||c.3954-296G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|24|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19595062 SNP-3.19593572. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcG/tcC|p.Ser632Ser/c.1896T>C|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19596740 SNP-3.19595250. C A . . PR;EFF=intron_variant(MODIFIER|||c.1600+87G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|10|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19596996 SNP-3.19595506. A G . . PR;EFF=intron_variant(MODIFIER|||c.1559-128T>C|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|9|1) GT 0/0 0/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 19601864 SNP-3.19600374. C A . . PR;EFF=intron_variant(MODIFIER|||c.360+255G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 +3 19605197 SNP-3.19603707. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19605762 SNP-3.19604272. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19606910 SNP-3.19605420. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19607249 SNP-3.19605759. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 +3 19610709 SNP-3.19609219. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19611179 SNP-3.19609689. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19612474 SNP-3.19610984. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19614779 SNP-3.19613289. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19615499 SNP-3.19614009. C A . . PR;EFF=intron_variant(MODIFIER|||c.106-49G>T|212|LOC_Os03g35370|protein_coding|CODING|LOC_Os03g35370.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19616179 SNP-3.19614689. A G . . PR;EFF=intron_variant(MODIFIER|||c.105+361T>C|212|LOC_Os03g35370|protein_coding|CODING|LOC_Os03g35370.1|1|1) GT 0/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 +3 19616877 SNP-3.19615387. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. +3 19616878 SNP-3.19615388. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19618127 SNP-3.19616637. A G . . PR;EFF=synonymous_variant(LOW||aGc/aGc|p.Ser294Ser/c.881A>G|1028|LOC_Os03g35380|protein_coding|CODING|LOC_Os03g35380.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 +3 19618567 SNP-3.19617077. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cca/Aca|p.Pro441Thr/c.1321C>A|1028|LOC_Os03g35380|protein_coding|CODING|LOC_Os03g35380.1|2|1) GT 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 +3 19623746 SNP-3.19622256. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acT|p.Thr1082Thr/c.3246G>T|1908|LOC_Os03g35390|protein_coding|CODING|LOC_Os03g35390.1|4|1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19627672 SNP-3.19626182. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 +3 19628617 SNP-3.19627127. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 +3 19629736 SNP-3.19628246. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/1 0/1 1/1 0/0 0/1 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/1 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 +3 19630493 SNP-3.19629003. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg374Pro/c.1121T>C|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 19630519 SNP-3.19629029. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn365Asn/c.1095G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19630572 SNP-3.19629082. C A . . PR;EFF=splice_region_variant(LOW|||c.1048G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|7|1),intron_variant(MODIFIER|||c.1048-6G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|7|1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 19631305 SNP-3.19629815. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.644G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|5|1),intron_variant(MODIFIER|||c.644-2G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|4|1);LOF=(LOC_Os03g35400|LOC_Os03g35400|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 +3 19632687 SNP-3.19631197. C A . . PR;EFF=synonymous_variant(LOW|SILENT|atC/atT|p.Ile8Ile/c.24G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19632711 SNP-3.19631221. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19636067 SNP-3.19634577. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19638983 SNP-3.19637493. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19643016 SNP-3.19641526. C A . . PR;EFF=synonymous_variant(LOW||aTc/aTc|p.Ile1357Ile/c.4070G>T|1436|LOC_Os03g35430|protein_coding|CODING|LOC_Os03g35430.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 19652068 SNP-3.19650578. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 +3 19654407 SNP-3.19652917. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19654713 SNP-3.19653223. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19656074 SNP-3.19654584. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr1194Ser/c.3580G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19656332 SNP-3.19654842. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggg/Tgg|p.Gly1108Trp/c.3322G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|11|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19656379 SNP-3.19654889. C A . . PR;EFF=synonymous_variant(LOW||cTg/cTg|p.Leu1092Leu/c.3275G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19657351 SNP-3.19655861. C A . . PR;EFF=intron_variant(MODIFIER|||c.3028+119G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|10|1) GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. +3 19664349 SNP-3.19662859. A G . . PR;EFF=intron_variant(MODIFIER|||c.188+926T>C|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|1|1) GT 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19665188 SNP-3.19663698. C A . . PR;EFF=intron_variant(MODIFIER|||c.188+87G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|1|1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. +3 19665222 SNP-3.19663732. C A . . PR;EFF=intron_variant(MODIFIER|||c.188+53G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19667063 SNP-3.19665573. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 +3 19667335 SNP-3.19665845. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19667669 SNP-3.19666179. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|tCg/tAg|p.Ser34*/c.101C>A|126|LOC_Os03g35470|protein_coding|CODING|LOC_Os03g35470.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 +3 19668515 SNP-3.19667025. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 +3 19671820 SNP-3.19670330. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|atC/atG|p.Ile604Met/c.1812A>G|697|LOC_Os03g35480|protein_coding|CODING|LOC_Os03g35480.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/1 1/1 ./. 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 1/1 ./. 1/1 +3 19672105 SNP-3.19670615. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 +3 19672425 SNP-3.19670935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 +3 19672940 SNP-3.19671450. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 19680398 SNP-3.19678908. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly125Gly/c.373A>G|159|LOC_Os03g35500|protein_coding|CODING|LOC_Os03g35500.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19684618 SNP-3.19683128. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/1 0/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 +3 19684739 SNP-3.19683249. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 ./. 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19686461 SNP-3.19684971. C A . . PR;EFF=intron_variant(MODIFIER|||c.106-156C>A|159|LOC_Os03g35520|protein_coding|CODING|LOC_Os03g35520.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19686821 SNP-3.19685331. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln104Glu/c.310A>G|159|LOC_Os03g35520|protein_coding|CODING|LOC_Os03g35520.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/1 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 +3 19686986 SNP-3.19685496. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Atc|p.Val159Ile/c.475C>A|159|LOC_Os03g35520|protein_coding|CODING|LOC_Os03g35520.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19687520 SNP-3.19686030. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 +3 19688121 SNP-3.19686631. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19688841 SNP-3.19687351. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19690754 SNP-3.19689264. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 +3 19690846 SNP-3.19689356. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19698612 SNP-3.19697122. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 19702588 SNP-3.19701098. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 +3 19703781 SNP-3.19702291. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. +3 19704698 SNP-3.19703208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 +3 19705578 SNP-3.19704088. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 +3 19707481 SNP-3.19705991. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 +3 19716025 SNP-3.19714535. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 +3 19716093 SNP-3.19714603. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19717564 SNP-3.19716074. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 +3 19717948 SNP-3.19716458. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19718204 SNP-3.19716714. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19718527 SNP-3.19717037. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19718720 SNP-3.19717230. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/1 ./. 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 +3 19719018 SNP-3.19717528. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 +3 19719052 SNP-3.19717562. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19720745 SNP-3.19719255. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala224Ala/c.672A>G|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 +3 19720838 SNP-3.19719348. C A . . PR;EFF=synonymous_variant(LOW|SILENT|caG/caA|p.Gln255Gln/c.765C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 +3 19721419 SNP-3.19719929. C A . . PR;EFF=intron_variant(MODIFIER|||c.1291-22C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19721460 SNP-3.19719970. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGt/aAt|p.Ser437Asn/c.1310C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19721861 SNP-3.19720371. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Gtc|p.Phe571Val/c.1711A>G|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 +3 19721975 SNP-3.19720485. C A . . PR;EFF=synonymous_variant(LOW||Agt/Agt|p.Ser609Ser/c.1825C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19722889 SNP-3.19721399. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19723107 SNP-3.19721617. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 +3 19723127 SNP-3.19721637. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. +3 19723998 SNP-3.19722508. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaA/gaC|p.Glu420Asp/c.1260T>C|497|LOC_Os03g35580|protein_coding|CODING|LOC_Os03g35580.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19724422 SNP-3.19722932. A G . . PR;EFF=synonymous_variant(LOW||cCa/cCa|p.Pro279Pro/c.836T>C|497|LOC_Os03g35580|protein_coding|CODING|LOC_Os03g35580.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 +3 19724860 SNP-3.19723370. A G . . PR;EFF=synonymous_variant(LOW||Cgg/Cgg|p.Arg199Arg/c.595T>C|497|LOC_Os03g35580|protein_coding|CODING|LOC_Os03g35580.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 +3 19725751 SNP-3.19724261. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19727065 SNP-3.19725575. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaA|p.Asp27Glu/c.81C>A|868|LOC_Os03g35600|protein_coding|CODING|LOC_Os03g35600.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 +3 19727730 SNP-3.19726240. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGg/cAg|p.Arg249Gln/c.746C>A|868|LOC_Os03g35600|protein_coding|CODING|LOC_Os03g35600.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19731749 SNP-3.19730259. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 +3 19731783 SNP-3.19730293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19732132 SNP-3.19730642. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19734634 SNP-3.19733144. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19735124 SNP-3.19733634. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 +3 19735146 SNP-3.19733656. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 +3 19741750 SNP-3.19740260. C A . . PR;EFF=intron_variant(MODIFIER|||c.508-571G>T|417|LOC_Os03g35640|protein_coding|CODING|LOC_Os03g35640.1|4|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 +3 19744116 SNP-3.19742626. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 +3 19744886 SNP-3.19743396. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. +3 19747751 SNP-3.19746261. C A . . PR;EFF=intron_variant(MODIFIER|||c.112-457C>A|134|LOC_Os03g35650|protein_coding|CODING|LOC_Os03g35650.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19747918 SNP-3.19746428. C A . . PR;EFF=intron_variant(MODIFIER|||c.112-290C>A|134|LOC_Os03g35650|protein_coding|CODING|LOC_Os03g35650.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 +3 19751038 SNP-3.19749548. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19762971 SNP-3.19761481. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 +3 19763222 SNP-3.19761732. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 +3 19764705 SNP-3.19763215. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19765552 SNP-3.19764062. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19766171 SNP-3.19764681. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19767442 SNP-3.19765952. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu119Met/c.355C>A|798|LOC_Os03g35690|protein_coding|CODING|LOC_Os03g35690.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. +3 19770398 SNP-3.19768908. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19777683 SNP-3.19776193. A G . . PR;EFF=synonymous_variant(LOW||Cag/Cag|p.Gln293Gln/c.877T>C|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 19777886 SNP-3.19776396. A G . . PR;EFF=intron_variant(MODIFIER|||c.776-102T>C|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|4|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 +3 19777977 SNP-3.19776487. C A . . PR;EFF=intron_variant(MODIFIER|||c.775+26G>T|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|4|1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 19778078 SNP-3.19776588. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gag/Tag|p.Glu234*/c.700G>T|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|4|1);LOF=(LOC_Os03g35710|LOC_Os03g35710|1|1.00);NMD=(LOC_Os03g35710|LOC_Os03g35710|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/1 +3 19785679 SNP-3.19784189. A G . . PR;EFF=intron_variant(MODIFIER|||c.885+96T>C|326|LOC_Os03g35720|protein_coding|CODING|LOC_Os03g35720.1|1|1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 +3 19786568 SNP-3.19785078. C A . . PR;EFF=synonymous_variant(LOW||cTt/cTt|p.Leu31Leu/c.92G>T|326|LOC_Os03g35720|protein_coding|CODING|LOC_Os03g35720.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19787590 SNP-3.19786100. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 +3 19788235 SNP-3.19786745. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. +3 19788877 SNP-3.19787387. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19789181 SNP-3.19787691. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 +3 19790313 SNP-3.19788823. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 +3 19793580 SNP-3.19792090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 ./. 0/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19794579 SNP-3.19793089. C A . . PR;EFF=synonymous_variant(LOW||caA/caA|p.Gln51Gln/c.153C>A|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19795654 SNP-3.19794164. C A . . PR;EFF=synonymous_variant(LOW||cAc/cAc|p.His383His/c.1148C>A|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19796643 SNP-3.19795153. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly509Glu/c.1526C>A|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19796959 SNP-3.19795469. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val614Val/c.1842A>G|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 +3 19798380 SNP-3.19796890. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19799905 SNP-3.19798415. A G . . PR;EFF=intron_variant(MODIFIER|||c.2695+46T>C|1152|LOC_Os03g35740|protein_coding|CODING|LOC_Os03g35740.1|5|1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/0 ./. 0/1 0/0 1/1 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 19801185 SNP-3.19799695. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgg/Tgg|p.Arg579Trp/c.1735G>T|1152|LOC_Os03g35740|protein_coding|CODING|LOC_Os03g35740.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 19805029 SNP-3.19803539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19805536 SNP-3.19804046. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19808714 SNP-3.19807224. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19810983 SNP-3.19809493. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 +3 19811307 SNP-3.19809817. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19815261 SNP-3.19813771. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19816969 SNP-3.19815479. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 0/0 +3 19821451 SNP-3.19819961. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 +3 19823020 SNP-3.19821530. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. +3 19825097 SNP-3.19823607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19825898 SNP-3.19824408. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 +3 19827035 SNP-3.19825545. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 +3 19827178 SNP-3.19825688ct. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 +3 19827206 SNP-3.19825716. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19831789 SNP-3.19830299. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19832788 SNP-3.19831298. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 +3 19834159 SNP-3.19832669. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGt/gCt|p.Gly1767Ala/c.5300T>C|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19834518 SNP-3.19833028. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtT|p.Val1647Val/c.4941G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 +3 19834644 SNP-3.19833154. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acT|p.Thr1605Thr/c.4815G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 +3 19834860 SNP-3.19833370. A G . . PR;EFF=intron_variant(MODIFIER|||c.4688-89T>C|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19834876 SNP-3.19833386. C A . . PR;EFF=intron_variant(MODIFIER|||c.4688-105G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|6|1) GT ./. 1/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 +3 19835332 SNP-3.19833842. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gga/Cga|p.Gly1480Arg/c.4438T>C|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 +3 19836206 SNP-3.19834716. C A . . PR;EFF=intron_variant(MODIFIER|||c.4386+204G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|5|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19836924 SNP-3.19835434. C A . . PR;EFF=intron_variant(MODIFIER|||c.4008+44G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19846674 SNP-3.19845184. C A . . PR;EFF=intron_variant(MODIFIER|||c.111+19G>T|63|LOC_Os03g35810|protein_coding|CODING|LOC_Os03g35810.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19846719 SNP-3.19845229. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Tct|p.Pro29Ser/c.85G>T|63|LOC_Os03g35810|protein_coding|CODING|LOC_Os03g35810.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19858269 SNP-3.19856779. C A . . PR;EFF=intron_variant(MODIFIER|||c.2275-31G>T|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|5|1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19858450 SNP-3.19856960. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agc/Cgc|p.Ser711Arg/c.2131T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 19859491 SNP-3.19858001. A G . . PR;EFF=intron_variant(MODIFIER|||c.1266+83T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|3|1) GT 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19860748 SNP-3.19859258. A G . . PR;EFF=splice_region_variant(LOW|||c.128T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|1|1),intron_variant(MODIFIER|||c.128-3T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 +3 19861709 SNP-3.19860219. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19862076 SNP-3.19860586. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19864083 SNP-3.19862593. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 +3 19864785 SNP-3.19863295. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||689|c.*571T>C|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||689|c.*512T>C|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 +3 19865578 SNP-3.19864088. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Act/Tct|p.Thr83Ser/c.247G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Act/Tct|p.Thr83Ser/c.247G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 +3 19866828 SNP-3.19865338. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1004|c.-1004G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1004|c.-1004G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19866953 SNP-3.19865463. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1129|c.-1129G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1129|c.-1129G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19868815 SNP-3.19867325. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19869761 SNP-3.19868271. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 +3 19871920 SNP-3.19870430. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 +3 19871999 SNP-3.19870509. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 ./. ./. 1/1 0/0 0/1 ./. 0/1 ./. 0/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 +3 19872532 SNP-3.19871042. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 +3 19873068 SNP-3.19871578. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 +3 19873396 SNP-3.19871906. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 ./. 0/0 +3 19874408 SNP-3.19872918. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19877262 SNP-3.19875772. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 +3 19879414 SNP-3.19877924. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 +3 19879842 SNP-3.19878352. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 19880957 SNP-3.19879467. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19881090 SNP-3.19879600. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19885100 SNP-3.19883610. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Gct|p.Pro61Ala/c.181A>G|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19885279 SNP-3.19883789. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ttG/ttA|p.Leu120Leu/c.360C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. +3 19885950 SNP-3.19884460. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile344Lys/c.1031C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 19886370 SNP-3.19884880. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp413Glu/c.1239C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|2|1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19886609 SNP-3.19885119. C A . . PR;EFF=intron_variant(MODIFIER|||c.1381-44C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19886701 SNP-3.19885211. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Aca|p.Ser477Thr/c.1429C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19887075 SNP-3.19885585. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ttA/ttG|p.Leu552Leu/c.1656A>G|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|5|1) GT 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. +3 19887290 SNP-3.19885800. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgC/cgG|p.Arg609Arg/c.1827A>G|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 0/1 0/0 ./. ./. ./. 0/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 19887468 SNP-3.19885978. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys669Lys/c.2005C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19887739 SNP-3.19886249. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 +3 19887755 SNP-3.19886265. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19891404 SNP-3.19889914. A G . . PR;EFF=synonymous_variant(LOW||cCt/cCt|p.Pro944Pro/c.2831T>C|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 +3 19892516 SNP-3.19891026. C A . . PR;EFF=intron_variant(MODIFIER|||c.2062-24G>T|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|5|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. +3 19892740 SNP-3.19891250. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tAc/tTc|p.Tyr657Phe/c.1970G>T|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19895384 SNP-3.19893894. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gag/Cag|p.Glu3Gln/c.7T>C|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. +3 19899833 SNP-3.19898343. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. ./. ./. 0/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 +3 19901647 SNP-3.19900157. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 +3 19902294 SNP-3.19900804. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 +3 19904535 SNP-3.19903045. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3042|c.*3042T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 +3 19905964 SNP-3.19904474. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1613|c.*1613G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19906300 SNP-3.19904810. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1277|c.*1277G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19906507 SNP-3.19905017. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||1070|c.*1070T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. +3 19906601 SNP-3.19905111. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||976|c.*976G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19906624 SNP-3.19905134. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||953|c.*953T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19907698 SNP-3.19906208. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAg/cTg|p.Gln25Leu/c.74G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19908511 SNP-3.19907021. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||740|c.-530T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19908967 SNP-3.19907477. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 19909565 SNP-3.19908075. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 ./. 1/1 0/1 ./. ./. ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 +3 19909852 SNP-3.19908362. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19917770 SNP-3.19916280. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr664Ser/c.1990G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 +3 19917982 SNP-3.19916492. A G . . PR;EFF=synonymous_variant(LOW||aCt/aCt|p.Thr593Thr/c.1778T>C|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19918171 SNP-3.19916681. C A . . PR;EFF=synonymous_variant(LOW||cTa/cTa|p.Leu530Leu/c.1589G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/1 0/1 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 +3 19918273 SNP-3.19916783. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTc/gCc|p.Val496Ala/c.1487T>C|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1) GT ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 +3 19918600 SNP-3.19917110. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cTt|p.His409Leu/c.1226G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19918707 SNP-3.19917217. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acC|p.Thr373Thr/c.1119T>C|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|3|1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/1 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/1 ./. 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/1 0/1 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 +3 19919419 SNP-3.19917929. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAa/gTa|p.Glu234Val/c.701G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 +3 19920044 SNP-3.19918554. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Att/Ttt|p.Ile26Phe/c.76G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 +3 19921742 SNP-3.19920252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 +3 19922833 SNP-3.19921343. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 19922943 SNP-3.19921453. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19924759 SNP-3.19923269. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 +3 19924786 SNP-3.19923296. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19929387 SNP-3.19927897. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 +3 19929707 SNP-3.19928217. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 +3 19930698 SNP-3.19929208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 +3 19931769 SNP-3.19930279. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19932125 SNP-3.19930635. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19932245 SNP-3.19930755. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 +3 19935876 SNP-3.19934386. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19936724 SNP-3.19935234. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCa/gAa|p.Ala188Glu/c.563C>A|262|LOC_Os03g35930|protein_coding|CODING|LOC_Os03g35930.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19939524 SNP-3.19938034. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg498Arg/c.1493A>G|649|LOC_Os03g35940|protein_coding|CODING|LOC_Os03g35940.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. ./. ./. 0/1 0/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 +3 19941914 SNP-3.19940424. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19942216 SNP-3.19940726. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19944547 SNP-3.19943057. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19944661 SNP-3.19943171. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19948191 SNP-3.19946701. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Act|p.Ser121Thr/c.361C>A|126|LOC_Os03g35950|protein_coding|CODING|LOC_Os03g35950.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19948632 SNP-3.19947142. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 +3 19948939 SNP-3.19947449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19949392 SNP-3.19947902. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 +3 19952853 SNP-3.19951363. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aac/Tac|p.Asn126Tyr/c.376G>T|425|LOC_Os03g35970|protein_coding|CODING|LOC_Os03g35970.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 +3 19953252 SNP-3.19951762. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Acg/Tcg|p.Thr39Ser/c.115G>T|425|LOC_Os03g35970|protein_coding|CODING|LOC_Os03g35970.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 +3 19956745 SNP-3.19955255. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19957190 SNP-3.19955700. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 +3 19957532 SNP-3.19956042. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. 0/1 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 +3 19961777 SNP-3.19960287. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 +3 19962829 SNP-3.19961339. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGc/aTc|p.Ser427Ile/c.1280G>T|484|LOC_Os03g35990|protein_coding|CODING|LOC_Os03g35990.1|8|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 +3 19969198 SNP-3.19967708. A G . . PR;EFF=intron_variant(MODIFIER|||c.3369-55T>C|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|4|1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 +3 19969228 SNP-3.19967738. C A . . PR;EFF=intron_variant(MODIFIER|||c.3369-85G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19969947 SNP-3.19968457. C A . . PR;EFF=synonymous_variant(LOW||aTt/aTt|p.Ile1047Ile/c.3140G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19970174 SNP-3.19968684. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttA/ttT|p.Leu971Phe/c.2913G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19970612 SNP-3.19969122. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcC|p.Ser825Ser/c.2475T>C|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19971695 SNP-3.19970205. C A . . PR;EFF=synonymous_variant(LOW||ctT/ctT|p.Leu464Leu/c.1392G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19973386 SNP-3.19971896. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tTt|p.Ser7Phe/c.20G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 +3 19974011 SNP-3.19972521. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 +3 19975116 SNP-3.19973626. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 +3 19976521 SNP-3.19975031. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 +3 19983247 SNP-3.19981757. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctA|p.Leu643Leu/c.1929C>A|1461|LOC_Os03g36030|protein_coding|CODING|LOC_Os03g36030.1|1|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 +3 19989349 SNP-3.19987859. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/1 0/1 ./. 0/0 0/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 +3 19989539 SNP-3.19988049. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 +3 19991345 SNP-3.19989855. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 +3 19991997 SNP-3.19990507. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 +3 19992016 SNP-3.19990526. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/filelog.txt Tue Aug 14 07:59:19 2018 -0400 @@ -0,0 +1,101 @@ +beagle.jar (r1399) +Copyright (C) 2014 Brian L. Browning +Enter "java -jar beagle.jar" for a summary of command line arguments. +Start time: 10:43 AM CEST on 20 Jul 2018 + +Command line: java -Xmx1963m -jar beagle.jar + gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat + phase-its=5 + impute-its=5 + out=out + +reference samples: 0 +target samples: 257 + singles: 257 + duos: 0 + trios: 0 + +Window 1 [ 3:15001183-19992016 ] +target markers: 3094 + +Starting burn-in iterations + +Window=1 Iteration=1 +Time for building model: 5 seconds +Time for sampling (singles): 5 seconds +Singles model +mean edges/level: 21 max edges/level: 39 +mean edges/node: 1.655 mean count/edge: 24 + +Window=1 Iteration=2 +Time for building model: 4 seconds +Time for sampling (singles): 5 seconds +Singles model +mean edges/level: 23 max edges/level: 46 +mean edges/node: 1.513 mean count/edge: 22 + +Window=1 Iteration=3 +Time for building model: 7 seconds +Time for sampling (singles): 6 seconds +Singles model +mean edges/level: 25 max edges/level: 52 +mean edges/node: 1.425 mean count/edge: 21 + +Window=1 Iteration=4 +Time for building model: 4 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 27 max edges/level: 51 +mean edges/node: 1.393 mean count/edge: 19 + +Window=1 Iteration=5 +Time for building model: 4 seconds +Time for sampling (singles): 5 seconds +Singles model +mean edges/level: 28 max edges/level: 57 +mean edges/node: 1.374 mean count/edge: 18 + +Starting phasing iterations + +Window=1 Iteration=6 +Time for building model: 5 seconds +Time for sampling (singles): 6 seconds +Singles model +mean edges/level: 29 max edges/level: 54 +mean edges/node: 1.349 mean count/edge: 18 + +Window=1 Iteration=7 +Time for building model: 4 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 29 max edges/level: 56 +mean edges/node: 1.362 mean count/edge: 18 + +Window=1 Iteration=8 +Time for building model: 5 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 29 max edges/level: 51 +mean edges/node: 1.346 mean count/edge: 18 + +Window=1 Iteration=9 +Time for building model: 5 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 29 max edges/level: 57 +mean edges/node: 1.352 mean count/edge: 18 + +Window=1 Iteration=10 +Time for building model: 3 seconds +Time for sampling (singles): 6 seconds +Singles model +mean edges/level: 30 max edges/level: 56 +mean edges/node: 1.340 mean count/edge: 17 + +Number of markers: 3094 +Total time for building model: 46 seconds +Total time for sampling: 1 minute 2 seconds +Total run time: 1 minute 53 seconds + +End time: 10:45 AM CEST on 20 Jul 2018 +beagle.jar (r1399) finished
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.vcf Tue Aug 14 07:59:19 2018 -0400 @@ -0,0 +1,3104 @@ +##fileformat=VCFv4.1 +##filedate=20180720 +##source="beagle.jar (r1399)" +##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated Allele Frequencies"> +##INFO=<ID=AR2,Number=1,Type=Float,Description="Allelic R-Squared: estimated correlation between most probable ALT dose and true ALT dose"> +##INFO=<ID=DR2,Number=1,Type=Float,Description="Dosage R-Squared: estimated correlation between estimated ALT dose [P(RA) + 2*P(AA)] and true ALT dose"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=DS,Number=1,Type=Float,Description="estimated ALT dose [P(RA) + P(AA)]"> +##FORMAT=<ID=GP,Number=G,Type=Float,Description="Estimated Genotype Probability"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT c88dcbba.0 0b7d031b.0 16ef3c90.0 26863647.0 7f32098d.0 608b0d34.0 46aa9c6a.0 d00c1e13.0 8366125c.0 a358fb3f.0 2a5ee06d.0 df3c89f8.0 78f9e9fe.0 04aca4b5.0 04704bb4.0 5cf82125.0 559cd294.0 98ca16ae.0 1865f890.0 66391666.0 824bd841.0 971d8d35.0 1580b445.0 3476f3f1.0 6fe1d5f1.0 727d7321.0 8a1459b3.0 1a210383.0 2aa697f5.0 a7596568.0 41872470.0 d9a92db4.0 66b6164a.0 5a43ae22.0 6ac8c69b.0 3afe78bc.0 bf19b73d.0 d7e9eece.0 82e8b7f7.0 60121701.0 6cf8dce4.0 3051c486.0 59afa5e3.0 68b91064.0 ae03e236.0 ddaead61.0 aa6cd0c1.0 e1d9a122.0 fb625f89.0 cb0723a4.0 98042619.0 aca14ce9.0 bada3969.0 5efeb5b6.0 fe614ecb.0 bea7cbcf.0 1abb6b2c.0 4506b36e.0 addc58a4.0 f5f3d6ea.0 e1838272.0 d2dd5d08.0 4874cc49.0 a6e508e5.0 61544ce0.0 429e439a.0 522427a2.0 b41ea6b3.0 773db8bf.0 ce7eb496.0 2eafa96f.0 533385bb.0 1f8b989f.0 44fe4cf1.0 07990ed9.0 f40ea464.0 c7913661.0 c54cc672.0 66c5c186.0 c111198a.0 5b45a727.0 de954805.0 2552833e.0 c840a160.0 529e807c.0 1fb8be6d.0 a85f295d.0 cb0c4d54.0 c3b20632.0 3f0e6324.0 178d96de.0 225b17eb.0 99d33763.0 d10e2929.0 8f99b9e2.0 f6801eb5.0 e2606999.0 b308ee1b.0 a7e6bc0f.0 84e1a141.0 bcea78dd.0 e1d1c3b0.0 01a58510.0 9c00ac3a.0 71ad2583.0 ea2ae002.0 bc730b70.0 9c62b49e.0 5da42fd9.0 3b7bddf8.0 45388f1b.0 cd33864f.0 28dd8a58.0 1de0e087.0 07fd6392.0 f8c60a5c.0 25cdd8ae.0 23b0b44c.0 484b2a0f.0 82e17a03.0 be2b0b83.0 260c1d61.0 e30161a0.0 115e701d.0 4c13a3a3.0 08beaab3.0 68f6c96b.0 2d661c20.0 fb2aa5d5.0 2ece01ea.0 e048f5ff.0 ee58d650.0 5872a595.0 5975119a.0 e3fc5497.0 a51b2a39.0 d66638c8.0 a5ef5ab7.0 7d71b69f.0 b4b4df33.0 14d89242.0 9bdaf6eb.0 c949dc7c.0 d4dd88ed.0 8fa373e8.0 eaa3a28a.0 8609fb0e.0 a6d8f1fd.0 be814f56.0 abc6960f.0 832b2be7.0 5776533f.0 3d3f5b4e.0 bc700e39.0 946e0202.0 47c2ea40.0 c86d6702.0 b95ce243.0 2e05f839.0 79ec00de.0 f292fe0a.0 a65ecc2d.0 2b962329.0 718e09f3.0 0a5fbba4.0 89d2c5a0.0 61d7b167.0 2bfcbe44.0 90bc17da.0 65329b91.0 e069425a.0 5325e87e.0 7578b606.0 6fb127b9.0 3b8476cc.0 c8fc9010.0 fd96414a.0 7f0e7041.0 a0c41ad0.0 1e5e8456.0 ab4a346a.0 77bec15a.0 2bca2f34.0 9651d67d.0 9a5569b2.0 b961cc90.0 e42dd51d.0 911f856a.0 53e1db9a.0 e5b216b3.0 18484bd4.0 64f24c90.0 9cbb223a.0 f7e1ce6e.0 9e44e293.0 eac19fb8.0 76f56677.0 87621330.0 dc2cf39b.0 17627a92.0 7126c359.0 c20dfc59.0 cbd6b346.0 f30e146b.0 1510e4aa.0 cf44b628.0 bd7aaa87.0 e8f708a5.0 2b4e06fe.0 3eb8fab5.0 aeed4684.0 328163e1.0 c7aeb39f.0 3e58f34c.0 cc0ef8cf.0 30646147.0 192e24ab.0 5ef1be74.0 71d5fcf4.0 714ac141.0 0f6a67da.0 a796716d.0 a8319fc6.0 93387d96.0 5384be83.0 8fafd383.0 cff871e8.0 2a7724c1.0 773e969e.0 743f41c1.0 1a946dc6.0 9ac72c9e.0 5505a767.0 8cd35626.0 fdd98970.0 86556239.0 44aeff79.0 c7d2513e.0 2a9d8d47.0 39dd7feb.0 c0936cf1.0 5aa7968d.0 73c4fdfb.0 5ae0bd70.0 122a975b.0 2b81cf74.0 9b2223bb.0 bf18cbae.0 16463092.0 7a723d9e.0 c8a73fe7.0 5b144b9c.0 3aa51818.0 4f643bf5.0 3fb62843.0 c0d6eca3.0 43f72773.0 +3 15001183 SNP-3.14999829. C A . PASS AR2=1;DR2=1;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15001469 SNP-3.15000115. A G . PASS AR2=1;DR2=1;AF=0.41 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.995:0.005,0.995,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15002088 SNP-3.15000734. A G . PASS AR2=0.993;DR2=0.993;AF=0.39 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.292:0.729,0.25,0.021 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.014,0.986 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 1|1:2:0,0,1 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.032:0.008,0.952,0.04 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.032:0.008,0.952,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.08:0.922,0.077,0.002 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.08:0.922,0.077,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15002962 SNP-3.15001608. C A . PASS AR2=1;DR2=1;AF=0.389 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15006811 SNP-3.15005457. C A . PASS AR2=0.998;DR2=0.998;AF=0.369 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.006,0.14,0.854 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15008914 SNP-3.15007560. C A . PASS AR2=0.988;DR2=0.991;AF=0.421 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 0|0:0.31:0.714,0.261,0.025 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.159:0.847,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.31:0.714,0.261,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.309:0.716,0.26,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.716,0.259,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.72,0.257,0.024 0|1:0.335:0.694,0.277,0.029 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.309:0.716,0.26,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15009272 SNP-3.15007918. A G . PASS AR2=0.987;DR2=0.989;AF=0.36 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.767,0.218,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.177,0.008 0|1:1:0,1,0 0|0:0.25:0.766,0.218,0.016 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.243:0.772,0.214,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.25:0.766,0.218,0.016 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.146:0.86,0.134,0.006 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.791:0.007,0.194,0.799 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.791:0.007,0.194,0.799 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.791:0.007,0.194,0.799 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.245:0.77,0.214,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.171:0.837,0.154,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 15009454 SNP-3.15008100. A G . PASS AR2=1;DR2=1;AF=0.366 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.993:0.007,0.993,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15010303 SNP-3.15008949. A G . PASS AR2=0.99;DR2=0.99;AF=0.485 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:1.015:0.243,0.5,0.258 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.015:0.243,0.5,0.258 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.015:0.243,0.5,0.258 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.028:0.236,0.499,0.264 1|1:2:0,0,1 +3 15012222 SNP-3.15010868. A G . PASS AR2=0.997;DR2=0.998;AF=0.279 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.528:0.002,0.468,0.53 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0,0.04,0.96 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15013793 SNP-3.15012439. C A . PASS AR2=0.988;DR2=0.991;AF=0.32 GT:DS:GP 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.818:0.008,0.165,0.826 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.034:0.966,0.033,0 1|1:2:0,0,1 0|1:0.548:0.463,0.527,0.01 0|0:0.038:0.963,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.037:0.964,0.036,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.551,0.449,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.818:0.01,0.163,0.827 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.645:0.021,0.313,0.666 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.804:0.011,0.174,0.815 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15016928 SNP-3.15015574. C A . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15016994 SNP-3.15015640. A G . PASS AR2=1;DR2=1;AF=0.268 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15017069 SNP-3.15015715. A G . PASS AR2=1;DR2=1;AF=0.315 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15017825 SNP-3.15016471. A G . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.004:0.005,0.985,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15021297 SNP-3.15019943. A G . PASS AR2=0.993;DR2=0.993;AF=0.315 GT:DS:GP 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.946 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.001,0.053,0.946 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:1.94:0.001,0.058,0.941 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|1:1:0,1,0 1|1:1.946:0.001,0.053,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 0|0:0.034:0.967,0.033,0 0|0:0.033:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0.038:0.962,0.037,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.034:0.966,0.034,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15021415 SNP-3.15020061. A G . PASS AR2=0.998;DR2=0.998;AF=0.38 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0,0.17,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.128:0.872,0.127,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.068:0.933,0.066,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15021478 SNP-3.15020124. A G . PASS AR2=0.999;DR2=0.999;AF=0.315 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.103:0.899,0.099,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.927:0.001,0.071,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15021637 SNP-3.15020283. A G . PASS AR2=1;DR2=1;AF=0.385 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15022555 SNP-3.15021201. A G . PASS AR2=0.984;DR2=0.986;AF=0.339 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|0:0:1,0,0 0|0:0.154:0.852,0.143,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.997:0.006,0.991,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.911,0.089,0 0|0:0.161:0.845,0.148,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.177:0.83,0.162,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.178:0.83,0.162,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.165:0.842,0.152,0.007 0|0:0.016:0.984,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.157:0.849,0.145,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.176:0.832,0.16,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.176:0.832,0.16,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0.182:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 1|1:2:0,0,1 +3 15022888 SNP-3.15021534. A G . PASS AR2=0.995;DR2=0.996;AF=0.302 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.952:0.001,0.047,0.953 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.949 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.953 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 1|1:2:0,0,1 0|0:0.222:0.778,0.222,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.001,0.065,0.935 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.008,0.164,0.829 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15023579 SNP-3.15022225. A G . PASS AR2=1;DR2=1;AF=0.27 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15025795 SNP-3.15024441. A G . PASS AR2=0.993;DR2=0.993;AF=0.34 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.974:0.263,0.499,0.238 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.975:0.263,0.499,0.238 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.974:0.263,0.499,0.238 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15029041 SNP-3.15027687. A G . PASS AR2=0.985;DR2=0.989;AF=0.213 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.249:0.767,0.217,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.697,0.295,0.008 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.734:0.298,0.67,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.114:0.888,0.109,0.003 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.1,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.681,0.308,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.332:0.683,0.302,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15029887 SNP-3.15028533. A G . PASS AR2=0.958;DR2=0.97;AF=0.247 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.608:0.038,0.315,0.647 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.038,0.315,0.647 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.608:0.038,0.315,0.647 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.517:0.056,0.372,0.572 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.036,0.306,0.658 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.606:0.039,0.316,0.645 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.038,0.315,0.647 1|1:1.608:0.039,0.315,0.646 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.529:0.054,0.364,0.582 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.612:0.038,0.313,0.649 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.589:0.042,0.326,0.632 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.038,0.315,0.647 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.609:0.038,0.315,0.647 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.546:0.051,0.353,0.596 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.589:0.042,0.326,0.632 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.605:0.039,0.317,0.644 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.529:0.056,0.359,0.585 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15030098 SNP-3.15028744. A G . PASS AR2=0.995;DR2=0.997;AF=0.234 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.897:0.003,0.097,0.9 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.481:0.068,0.383,0.549 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.944:0.001,0.055,0.945 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15031273 SNP-3.15029919. C A . PASS AR2=0.999;DR2=0.999;AF=0.323 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.962,0.038,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15032589 SNP-3.15031235. A G . PASS AR2=0.974;DR2=0.978;AF=0.305 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.899:0.003,0.096,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:1.894:0.003,0.1,0.897 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.873:0.004,0.119,0.877 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:1.877:0.004,0.116,0.88 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.006,0.145,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.886:0.003,0.107,0.889 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 1|0:1.326:0.032,0.61,0.358 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.446:0.089,0.377,0.535 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.897:0.003,0.098,0.899 0|0:0:1,0,0 1|1:1.892:0.003,0.102,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0.436:0.599,0.366,0.035 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.907:0.002,0.088,0.909 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.654:0.029,0.287,0.683 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.799,0.186,0.015 0|0:0.073:0.929,0.07,0.001 1|1:1.811:0.03,0.13,0.84 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.071:0.93,0.068,0.001 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.009,0.174,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.894:0.003,0.101,0.897 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.003,0.098,0.899 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.003,0.098,0.899 1|1:1.897:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 +3 15032652 SNP-3.15031298. A G . PASS AR2=0.993;DR2=0.995;AF=0.246 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.57:0.024,0.383,0.594 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.598:0.029,0.344,0.627 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.113:0.892,0.104,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15033259 SNP-3.15031905. A G . PASS AR2=0.995;DR2=0.996;AF=0.347 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.119:0.17,0.541,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:1.993:0,0.006,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.007,0.189,0.804 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.713:0.008,0.271,0.721 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15041164 SNP-3.15039810. A G . PASS AR2=0.99;DR2=0.992;AF=0.205 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.845,0.137,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.86:0.002,0.135,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.859,0.14,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.532:0.471,0.527,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.15:0.852,0.145,0.002 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.832,0.165,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.942,0.056,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15045891 SNP-3.15044537. A G . PASS AR2=0.982;DR2=0.986;AF=0.354 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.131:0.873,0.122,0.004 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.86,0.135,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|1:1:0,1,0 0|0:0.133:0.871,0.125,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.13:0.875,0.121,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.927,0.073,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.884,0.112,0.004 1|0:1.131:0.001,0.868,0.132 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.53:0.484,0.502,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.354:0.664,0.318,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.149:0.857,0.137,0.006 1|0:1:0,1,0 0|0:0.189:0.823,0.166,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.586:0.46,0.493,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.089,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.877,0.122,0.002 1|1:2:0,0,1 +3 15048277 SNP-3.15046923. C A . PASS AR2=0.988;DR2=0.991;AF=0.316 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.481:0.529,0.46,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.706,0.256,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.844,0.152,0.004 0|1:0.613:0.413,0.561,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.419:0.646,0.289,0.065 0|0:0:1,0,0 0|0:0.037:0.965,0.034,0.001 0|0:0.025:0.976,0.024,0.001 0|0:0.205:0.796,0.203,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.086:0,0.914,0.086 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.813,0.18,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.977,0.022,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.074,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15048568 SNP-3.15047214. A G . PASS AR2=0.991;DR2=0.993;AF=0.364 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.875:0.004,0.117,0.879 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.626:0.505,0.363,0.132 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.872,0.125,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0,0.067,0.932 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.86:0.005,0.13,0.865 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.897:0.002,0.098,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.005,0.121,0.875 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.002,0.072,0.927 1|1:2:0,0,1 0|0:0.071:0.932,0.065,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15063744 SNP-3.15062390. A G . PASS AR2=1;DR2=1;AF=0.27 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15063983 SNP-3.15062629. A G . PASS AR2=0.998;DR2=0.998;AF=0.361 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.011,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.604:0.005,0.385,0.609 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.999:0.001,0.999,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0.001,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 +3 15064067 SNP-3.15062713. A G . PASS AR2=0.988;DR2=0.99;AF=0.435 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.005,0.114,0.881 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.001,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.445:0.605,0.344,0.05 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.019,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.192:0.002,0.804,0.194 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0,0.054,0.946 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.002,0.072,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.003,0.076,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.002,0.064,0.934 1|1:2:0,0,1 1|1:1.922:0.003,0.072,0.925 1|1:2:0,0,1 1|1:1.886:0.007,0.099,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.071,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0.073:0.928,0.071,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.004,0.134,0.862 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 0|1:0.484:0.543,0.431,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.004,0.101,0.895 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.892:0.002,0.104,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.916:0.003,0.078,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15064405 SNP-3.15063051. A G . PASS AR2=0.999;DR2=0.999;AF=0.412 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.002,0.093,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.006,0.126,0.868 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15065635 SNP-3.15064281. A G . PASS AR2=0.984;DR2=0.987;AF=0.288 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 1|0:1:0,1,0 0|0:0.09:0.913,0.084,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.721:0.305,0.67,0.025 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.878,0.12,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.12:0.881,0.118,0.001 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.293:0.726,0.255,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.003,0.123,0.874 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.002,0.068,0.931 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.842:0.01,0.137,0.852 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.711:0.025,0.238,0.737 0|0:0:1,0,0 1|1:1.883:0.003,0.111,0.886 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.005,0.174,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.135,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0.001,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.378:0.644,0.335,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15065828 SNP-3.15064474. A G . PASS AR2=0.987;DR2=0.991;AF=0.272 GT:DS:GP 1|1:1.932:0.002,0.064,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.002,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.002,0.056,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.597:0.038,0.326,0.635 1|1:2:0,0,1 1|0:0.692:0.308,0.692,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.597:0.038,0.326,0.635 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.597:0.038,0.326,0.635 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.587:0.041,0.331,0.628 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15067575 SNP-3.15066221. A G . PASS AR2=0.995;DR2=0.996;AF=0.289 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.413:0.004,0.579,0.417 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.992:0.243,0.522,0.235 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 15067632 SNP-3.15066278. A G . PASS AR2=1;DR2=1;AF=0.288 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 15067704 SNP-3.15066350. A G . PASS AR2=0.981;DR2=0.983;AF=0.327 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.062:0.218,0.501,0.28 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.936:0.278,0.508,0.214 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.96:0.124,0.792,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.359:0.084,0.473,0.443 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.172:0.828,0.172,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.042:0.091,0.776,0.133 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.002,0.048,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.017,0.169,0.813 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.061:0.221,0.498,0.282 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.072:0.216,0.496,0.288 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.716:0.028,0.228,0.744 0|0:0:1,0,0 0|0:0:1,0,0 +3 15067776 SNP-3.15066422. A G . PASS AR2=0.947;DR2=0.955;AF=0.408 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.173:0.835,0.158,0.008 0|0:0.02:0.98,0.02,0 1|1:1.71:0.039,0.211,0.749 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.919,0.081,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|0:0.476:0.527,0.471,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.138:0.866,0.13,0.004 0|1:0.866:0.322,0.491,0.188 0|1:0.879:0.183,0.755,0.062 1|1:1.72:0.026,0.228,0.746 1|1:2:0,0,1 0|0:0.188:0.822,0.168,0.01 1|0:0.902:0.163,0.773,0.064 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.136:0.868,0.127,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.003:0.238,0.521,0.241 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.593:0.477,0.453,0.07 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.172:0.835,0.157,0.007 1|1:1.822:0,0.178,0.822 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.97:0.239,0.553,0.208 0|0:0:1,0,0 1|0:0.903:0.16,0.776,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.974,0.025,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.132:0.873,0.123,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.145:0.862,0.132,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.903:0.16,0.776,0.063 1|1:2:0,0,1 0|0:0.143:0.862,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.903:0.16,0.776,0.064 0|0:0.445:0.584,0.388,0.029 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.746:0.285,0.683,0.031 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.908:0.158,0.775,0.066 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 1|1:2:0,0,1 0|0:0.152:0.855,0.138,0.007 1|1:2:0,0,1 0|0:0.489:0.514,0.483,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0.212:0.8,0.187,0.012 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.902:0.165,0.767,0.068 0|0:0.252:0.752,0.244,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.021:0.98,0.02,0 0|0:0.181:0.827,0.165,0.008 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.147:0.859,0.135,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.843,0.151,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.906:0.158,0.779,0.064 1|0:0.903:0.16,0.776,0.064 1|0:0.903:0.16,0.776,0.064 1|1:2:0,0,1 0|0:0.835:0.34,0.484,0.176 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.908:0.158,0.775,0.067 1|0:0.843:0.336,0.485,0.179 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.901:0.163,0.772,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.145:0.861,0.133,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.829,0.162,0.009 1|1:2:0,0,1 0|0:0.206:0.806,0.183,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15067863 SNP-3.15066509. C A . PASS AR2=1;DR2=1;AF=0.243 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15067938 SNP-3.15066584. A G . PASS AR2=0.983;DR2=0.984;AF=0.248 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.617:0.003,0.377,0.62 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.981:0.204,0.611,0.185 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.98:0.205,0.611,0.184 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.953:0.154,0.739,0.107 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.754:0.381,0.484,0.135 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.992:0.225,0.558,0.217 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.963:0.216,0.604,0.18 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 15067978 SNP-3.15066624. A G . PASS AR2=0.983;DR2=0.984;AF=0.262 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.14:0.185,0.489,0.326 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.14:0.185,0.489,0.326 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.136:0.085,0.694,0.221 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.141:0.185,0.489,0.326 1|0:1.139:0.186,0.489,0.325 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.139:0.186,0.489,0.325 +3 15068177 SNP-3.15066823. A G . PASS AR2=0.992;DR2=0.995;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.88,0.108,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.901,0.099,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.648:0.458,0.436,0.106 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0.001 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 15068200 SNP-3.15066846. A G . PASS AR2=0.997;DR2=0.997;AF=0.265 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.998:0.015,0.972,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.861:0.007,0.125,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.895:0.003,0.1,0.897 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.871:0.004,0.122,0.874 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.001,0.061,0.937 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.002,0.095,0.902 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15068596 SNP-3.15067242. A G . PASS AR2=1;DR2=1;AF=0.377 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15069419 SNP-3.15068065. A G . PASS AR2=0.999;DR2=0.999;AF=0.251 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0,0.117,0.883 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15069431 SNP-3.15068077. A G . PASS AR2=0.956;DR2=0.965;AF=0.205 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.686:0.025,0.263,0.712 0|0:0:1,0,0 1|1:1.678:0.027,0.269,0.705 0|1:1.623:0.033,0.311,0.656 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.685:0.025,0.264,0.711 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.522:0,0.478,0.522 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.126:0.878,0.117,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.117:0.886,0.11,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.146:0.859,0.135,0.005 0|0:0.146:0.859,0.135,0.005 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.153:0.853,0.141,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0.181:0.827,0.165,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.124:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.329:0.709,0.252,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.259:0.741,0.259,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.75,0.235,0.015 0|0:0:1,0,0 0|0:0.195:0.818,0.168,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.017,0.222,0.76 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.84,0.153,0.007 1|1:2:0,0,1 1|1:1.689:0.025,0.261,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.716:0.019,0.245,0.735 0|0:0.008:0.992,0.008,0 1|1:1.715:0.02,0.246,0.735 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.135:0.869,0.126,0.005 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.151:0.855,0.139,0.006 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.69:0.025,0.26,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.743:0.017,0.222,0.761 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.124:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15069683 SNP-3.15068329. A G . PASS AR2=0.997;DR2=0.998;AF=0.304 GT:DS:GP 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.739:0,0.261,0.739 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.766:0,0.233,0.767 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15069856 SNP-3.15068502. A G . PASS AR2=1;DR2=1;AF=0.263 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15069889 SNP-3.15068535. A G . PASS AR2=0.996;DR2=0.997;AF=0.37 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.012:0.242,0.504,0.254 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.139:0.864,0.133,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.045:0.001,0.953,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.063:0.938,0.06,0.002 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15070071 SNP-3.15068717. A G . PASS AR2=0.966;DR2=0.975;AF=0.284 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.027:0.005,0.962,0.033 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.751:0.407,0.434,0.159 0|0:0:1,0,0 0|0:0.213:0.806,0.175,0.019 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.007,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.616,0.354,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.651,0.309,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.999:0.001,0.999,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.651,0.309,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.234:0.772,0.222,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.414:0.616,0.354,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.216:0.801,0.181,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.778,0.214,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.651,0.309,0.04 0|0:0.39:0.651,0.309,0.04 0|0:0.39:0.651,0.309,0.04 0|0:0:1,0,0 0|0:0.39:0.651,0.309,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.616,0.354,0.03 0|0:0.39:0.651,0.309,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.385:0.654,0.306,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15070205 SNP-3.15068851. A G . PASS AR2=0.979;DR2=0.988;AF=0.268 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.355:0.104,0.437,0.459 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.355:0.104,0.437,0.459 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.355:0.104,0.437,0.459 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.241:0.155,0.45,0.396 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.355:0.104,0.437,0.459 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15070559 SNP-3.15069205. A G . PASS AR2=0.902;DR2=0.921;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.045,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.76:0.385,0.469,0.146 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.709:0.416,0.459,0.125 0|1:0.773:0.377,0.473,0.15 0|0:0:1,0,0 1|0:0.753:0.39,0.468,0.143 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.823:0.348,0.482,0.171 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.781:0.372,0.475,0.153 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.57:0.512,0.406,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.412:0.622,0.345,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.162:0.838,0.162,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.758:0.387,0.468,0.145 0|1:0.75:0.389,0.471,0.14 0|0:0.758:0.387,0.468,0.145 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.772:0.377,0.473,0.149 1|0:1:0,1,0 0|1:1:0,1,0 0|1:0.733:0.4,0.466,0.133 0|0:0:1,0,0 0|0:0.762:0.381,0.476,0.143 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.709:0.416,0.46,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.511:0.555,0.379,0.066 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.698:0.426,0.451,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.715:0.416,0.453,0.131 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.728:0.406,0.461,0.134 0|0:0.73:0.405,0.46,0.135 0|1:1:0,1,0 0|0:0.715:0.416,0.453,0.131 0|0:0:1,0,0 0|1:0.717:0.414,0.454,0.131 0|0:0.456:0.598,0.348,0.054 0|1:0.715:0.416,0.453,0.131 0|0:0:1,0,0 0|0:0.491:0.568,0.372,0.059 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.455:0.599,0.347,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.455:0.599,0.347,0.054 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15070657 SNP-3.15069303. A G . PASS AR2=0.966;DR2=0.974;AF=0.266 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.384:0.125,0.367,0.508 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.275:0.097,0.532,0.371 0|0:0:1,0,0 1|0:0.789:0.211,0.789,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|1:0.94:0.281,0.498,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.957:0.272,0.499,0.229 0|0:0:1,0,0 0|0:0.921:0.291,0.496,0.212 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.991:0.196,0.618,0.186 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.698:0.449,0.405,0.146 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.586:0.511,0.392,0.097 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.957:0.272,0.499,0.229 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 15071721 SNP-3.15070367. A G . PASS AR2=0.987;DR2=0.989;AF=0.238 GT:DS:GP 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.952,0.046,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.736,0.251,0.013 0|0:0.215:0.793,0.198,0.009 0|0:0.132:0.873,0.122,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.921,0.076,0.003 0|0:0:1,0,0 0|0:0.12:0.883,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.342:0.675,0.308,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.249:0.087,0.577,0.336 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|0:0.995:0.026,0.953,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.731:0.02,0.229,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.827,0.164,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15071916 SNP-3.15070562. A G . PASS AR2=0.993;DR2=0.994;AF=0.389 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.269:0.735,0.262,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.806:0.354,0.487,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.175:0.832,0.161,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.918:0.293,0.496,0.211 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15072360 SNP-3.15071006. A G . PASS AR2=0.994;DR2=0.994;AF=0.237 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.023:0.239,0.5,0.262 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.003:0.249,0.499,0.252 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 15072470 SNP-3.15071116. A G . PASS AR2=0.984;DR2=0.988;AF=0.235 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0,0.406,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.878,0.116,0.006 1|1:2:0,0,1 1|1:1.952:0,0.047,0.952 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.765:0.004,0.226,0.769 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.182:0.829,0.16,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.002,0.044,0.954 1|0:1.359:0.019,0.602,0.378 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.95:0.001,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.316:0,0.683,0.316 1|0:0.997:0.095,0.814,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0,0.046,0.953 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.513:0.552,0.383,0.065 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.954 +3 15072855 SNP-3.15071501. A G . PASS AR2=0.994;DR2=0.996;AF=0.286 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.998:0.003,0.997,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0,0.406,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|0:1.08:0.003,0.915,0.082 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|0:1.4:0,0.599,0.401 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.005,0.055,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:1.997:0,0.003,0.997 1|1:1.875:0,0.125,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15073143 SNP-3.15071789. A G . PASS AR2=0.979;DR2=0.984;AF=0.3 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.387:0.051,0.511,0.438 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.944:0.278,0.5,0.222 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.948:0.287,0.478,0.235 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.39:0.048,0.514,0.438 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.279:0.125,0.471,0.404 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.441:0.027,0.505,0.468 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.451:0.022,0.505,0.473 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.45:0.022,0.505,0.473 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15073653 SNP-3.15072299. A G . PASS AR2=0.988;DR2=0.99;AF=0.223 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.481:0.547,0.426,0.028 0|0:0.278:0.735,0.251,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.406,0.485,0.109 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.075:0.249,0.427,0.324 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 15073924 SNP-3.15072570. A G . PASS AR2=1;DR2=1;AF=0.348 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15074046 SNP-3.15072692. A G . PASS AR2=1;DR2=1;AF=0.373 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.934:0,0.065,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15075268 SNP-3.15073914. A G . PASS AR2=0.995;DR2=0.996;AF=0.295 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.381:0.619,0.381,0 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 1|1:1.959:0,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.836:0.005,0.155,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.058,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15076823 SNP-3.15075469. A G . PASS AR2=0.997;DR2=0.998;AF=0.429 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.848:0.005,0.141,0.853 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.005,0.126,0.869 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.005:0.996,0.004,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0,0.093,0.907 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.004,0.121,0.875 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.002,0.084,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 +3 15092922 SNP-3.15091568. A G . PASS AR2=0.979;DR2=0.983;AF=0.194 GT:DS:GP 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.281:0.726,0.267,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.682,0.294,0.024 0|0:0:1,0,0 0|0:0.185:0.823,0.169,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.208:0.803,0.186,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.05,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.004,0.104,0.891 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.118:0.882,0.118,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.04,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 1|1:2:0,0,1 0|0:0.431:0.573,0.422,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.839,0.155,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15093289 SNP-3.15091935. A G . PASS AR2=0.993;DR2=0.995;AF=0.352 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.623:0.009,0.358,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.725,0.247,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.001,0.2,0.799 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.263:0.115,0.507,0.378 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15094063 SNP-3.15092709. A G . PASS AR2=0.992;DR2=0.993;AF=0.298 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.063:0.937,0.063,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.018,0.222,0.761 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.849,0.15,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.596:0.001,0.402,0.597 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.084,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.105,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15095753 SNP-3.15094399. A G . PASS AR2=0.964;DR2=0.973;AF=0.366 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.771,0.227,0.002 0|0:0.056:0.947,0.05,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.074:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.255:0.762,0.221,0.017 0|0:0:1,0,0 0|1:0.747:0.289,0.675,0.036 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.45:0.55,0.45,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.444:0.556,0.444,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.389:0.649,0.312,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.864,0.136,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.405:0.632,0.332,0.036 0|0:0:1,0,0 0|0:0.188:0.812,0.188,0 0|1:1:0,1,0 0|0:0.35:0.69,0.271,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.902,0.094,0.004 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.338:0.663,0.336,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.719,0.255,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.666,0.311,0.023 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.952:0.24,0.569,0.192 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.314:0.715,0.256,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.628:0.373,0.625,0.001 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0.152:0.852,0.144,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0.083:0.918,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.209:0.807,0.178,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.096:0.907,0.091,0.002 0|0:0:1,0,0 0|0:0.304:0.72,0.256,0.024 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.409:0.027,0.538,0.436 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.95,0.049,0.001 0|0:0.112:0.892,0.105,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.056,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15097742 SNP-3.15096388. A G . PASS AR2=0.94;DR2=0.953;AF=0.363 GT:DS:GP 0|0:0:1,0,0 0|0:0.169:0.839,0.154,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0.001 0|0:0:1,0,0 0|0:0.412:0.615,0.359,0.026 0|0:0.077:0.926,0.072,0.003 0|0:0.079:0.924,0.073,0.003 1|1:1.716:0.021,0.242,0.737 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.716:0.021,0.241,0.737 1|0:1:0,1,0 1|1:1.533:0.043,0.381,0.576 0|0:0.064:0.936,0.063,0.001 1|1:1.673:0.028,0.272,0.701 1|1:1.457:0.048,0.447,0.505 1|1:2:0,0,1 1|0:1.267:0.141,0.45,0.408 0|1:1:0,1,0 1|1:1.718:0.02,0.241,0.738 1|1:1.717:0.021,0.241,0.738 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.076:0.206,0.511,0.283 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.498:0.068,0.366,0.566 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.715:0.02,0.245,0.735 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.003,0.157,0.84 1|1:1.706:0.022,0.25,0.728 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.674:0.027,0.271,0.702 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.002,0.326,0.671 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.835:0.009,0.148,0.844 1|1:2:0,0,1 1|1:1.186:0.098,0.619,0.283 0|0:0.004:0.996,0.004,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0.085:0.918,0.079,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.933,0.065,0.002 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.065,0.002 0|0:0.082:0.921,0.076,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.708:0.022,0.248,0.73 0|1:1.367:0.09,0.453,0.457 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.11:0.187,0.517,0.297 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.533:0.044,0.378,0.578 1|1:1.655:0.028,0.29,0.682 1|0:1:0,1,0 1|1:1.717:0.021,0.242,0.737 1|1:1.717:0.021,0.241,0.738 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.766:0.014,0.206,0.78 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.731:0.019,0.232,0.75 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.273:0.14,0.448,0.413 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.686:0.026,0.262,0.712 1|1:1.725:0.019,0.236,0.745 0|0:0:1,0,0 0|0:0:1,0,0 +3 15098539 SNP-3.15097185. A G . PASS AR2=0.961;DR2=0.969;AF=0.355 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.87,0.13,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.762:0.015,0.209,0.776 0|0:0.005:0.995,0.005,0 1|1:1.882:0.005,0.109,0.887 1|1:1.762:0.015,0.209,0.776 0|1:1:0,1,0 1|1:1.404:0.055,0.485,0.46 0|0:0:1,0,0 1|1:1.873:0.007,0.113,0.88 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.774:0.013,0.2,0.787 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.424:0.048,0.479,0.473 1|1:1.77:0.014,0.203,0.783 1|1:1.7:0.029,0.242,0.729 1|1:1.782:0.011,0.195,0.794 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.005,0.089,0.906 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:1.864:0.005,0.126,0.869 1|1:1.794:0.011,0.185,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.313:0.048,0.592,0.361 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.003,0.3,0.696 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.004,0.191,0.805 1|1:1.325:0.069,0.538,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.298:0.035,0.631,0.333 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.003,0.099,0.898 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.005,0.082,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.011,0.189,0.8 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.765:0.013,0.208,0.778 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.764:0.014,0.207,0.778 1|1:2:0,0,1 1|1:1.765:0.014,0.207,0.779 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.408:0.053,0.485,0.462 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.005,0.091,0.905 1|0:1.345:0.061,0.533,0.406 1|1:1.704:0.02,0.255,0.724 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.761:0.015,0.21,0.776 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.007,0.142,0.851 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0.002,0.058,0.941 0|0:0.2:0.8,0.2,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 +3 15104295 SNP-3.15102941. A G . PASS AR2=1;DR2=1;AF=0.249 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0,0.066,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15105593 SNP-3.15104239. A G . PASS AR2=0.999;DR2=0.999;AF=0.31 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15105921 SNP-3.15104567. A G . PASS AR2=0.995;DR2=0.996;AF=0.412 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 1|1:1.735:0.023,0.219,0.758 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:1.84:0.01,0.14,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.8:0.01,0.18,0.81 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0,0.06,0.94 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.93:0,0.07,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0,0.043,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15106183 SNP-3.15104829. C A . PASS AR2=0.978;DR2=0.983;AF=0.248 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.877:0.013,0.098,0.89 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.97:0.001,0.029,0.97 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.059:0.942,0.058,0.001 1|1:1.846:0.001,0.151,0.847 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.094:0.91,0.087,0.003 0|0:0:1,0,0 0|0:0.231:0.79,0.19,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.826:0.18,0.815,0.005 0|0:0:1,0,0 1|1:1.667:0.025,0.283,0.692 1|1:1.761:0.015,0.208,0.777 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.907:0.005,0.083,0.912 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.866:0.005,0.124,0.871 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.83:0.015,0.14,0.845 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.844,0.151,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.005,0.12,0.875 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.304:0.167,0.361,0.472 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.916:0.002,0.079,0.918 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15108121 SNP-3.15106767. A G . PASS AR2=0.995;DR2=0.996;AF=0.42 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 1|1:1.94:0,0.06,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.482:0.007,0.505,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.93:0,0.07,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.961 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.965 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:1.988:0,0.012,0.988 1|1:1.992:0,0.008,0.992 1|1:1.992:0,0.008,0.992 1|1:1.989:0,0.011,0.989 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15108954 SNP-3.15107600. A G . PASS AR2=1;DR2=1;AF=0.422 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15112916 SNP-3.15111562. C A . PASS AR2=1;DR2=1;AF=0.274 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15116227 SNP-3.15114873. C A . PASS AR2=0.966;DR2=0.973;AF=0.323 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.083:0.92,0.076,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.162:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 0|0:0.195:0.818,0.169,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.852,0.142,0.006 0|0:0:1,0,0 0|0:0.161:0.846,0.148,0.007 0|0:0.248:0.764,0.223,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.693,0.271,0.036 1|0:1:0,1,0 0|0:0.161:0.847,0.146,0.007 0|0:0.062:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0.332:0.695,0.277,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.35:0.672,0.305,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|1:0.573:0.502,0.423,0.075 0|0:0.053:0.949,0.05,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.248:0.764,0.223,0.012 0|0:0:1,0,0 0|0:0.184:0.831,0.154,0.015 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.281:0.738,0.242,0.02 1|0:1:0,1,0 0|0:0.156:0.85,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.843,0.15,0.007 0|0:0.133:0.871,0.125,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.266:0.751,0.232,0.017 0|0:0:1,0,0 0|0:0.057:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.829,0.163,0.008 0|0:0.164:0.843,0.15,0.007 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.163:0.843,0.15,0.007 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.218:0.789,0.204,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.843,0.15,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.843,0.15,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15117473 SNP-3.15116119. A G . PASS AR2=1;DR2=1;AF=0.379 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15118197 SNP-3.15116843ga. C A . PASS AR2=0.983;DR2=0.988;AF=0.499 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.68:0.027,0.267,0.707 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.322:0.703,0.273,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.697:0.025,0.252,0.722 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.015:0.011,0.962,0.027 0|1:1.027:0.008,0.956,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.656:0.031,0.282,0.687 0|0:0:1,0,0 1|1:1.987:0,0.012,0.987 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.445:0.601,0.352,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.612:0.04,0.309,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.686:0.028,0.259,0.713 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.702:0.02,0.259,0.721 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.637:0.034,0.294,0.671 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 +3 15118218 SNP-3.15116864. C A . PASS AR2=1;DR2=1;AF=0.268 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15120220 SNP-3.15118866. A G . PASS AR2=1;DR2=1;AF=0.304 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15122456 SNP-3.15121102. C A . PASS AR2=1;DR2=1;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15123271 SNP-3.15121917. C A . PASS AR2=0.999;DR2=0.999;AF=0.271 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.943:0,0.056,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15123515 SNP-3.15122161. C A . PASS AR2=1;DR2=1;AF=0.267 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15124843 SNP-3.15123489. A G . PASS AR2=0.996;DR2=0.996;AF=0.223 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.236:0.767,0.23,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.802,0.19,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.918,0.08,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 +3 15126492 SNP-3.15125138. A G . PASS AR2=0.983;DR2=0.986;AF=0.274 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.48:0.044,0.432,0.524 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.282:0.125,0.468,0.407 1|1:1.703:0.018,0.261,0.721 0|0:0:1,0,0 1|1:1.916:0.003,0.079,0.918 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.054:0.109,0.727,0.164 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.243:0.132,0.494,0.374 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.007,0.149,0.844 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.005,0.132,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.004,0.112,0.884 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.003,0.18,0.817 1|1:1.943:0.002,0.054,0.944 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0.003,0.1,0.897 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.002,0.078,0.92 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.002,0.057,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 +3 15131782 SNP-3.15130428. C A . PASS AR2=1;DR2=1;AF=0.265 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15134720 SNP-3.15133366. C A . PASS AR2=0.992;DR2=0.994;AF=0.473 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.002,0.104,0.893 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 1|0:1.404:0.026,0.545,0.43 1|1:1.513:0.015,0.456,0.528 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.002,0.063,0.936 1|1:1.912:0.002,0.084,0.914 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.892:0.004,0.101,0.896 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.001,0.074,0.924 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.025:0.042,0.892,0.067 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.008,0.134,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15134837 SNP-3.15133483. C A . PASS AR2=0.999;DR2=0.999;AF=0.282 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15135234 SNP-3.15133880. A G . PASS AR2=0.998;DR2=0.998;AF=0.289 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.571:0.429,0.571,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15135562 SNP-3.15134208. A G . PASS AR2=0.994;DR2=0.995;AF=0.282 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.004,0.163,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.04,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:1.901:0.003,0.094,0.903 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.611:0.389,0.611,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.888:0.004,0.105,0.891 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0,0.067,0.933 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.814:0.008,0.17,0.822 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15135826 SNP-3.15134472. C A . PASS AR2=0.999;DR2=0.999;AF=0.292 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.064:0.938,0.06,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15137113 SNP-3.15135759. C A . PASS AR2=1;DR2=1;AF=0.28 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15138175 SNP-3.15136821. A G . PASS AR2=0.895;DR2=0.922;AF=0.246 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.851,0.141,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.79:0.376,0.459,0.165 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.696:0.428,0.447,0.125 0|1:0.819:0.331,0.519,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.002 0|0:0.708:0.4,0.492,0.108 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.647:0.435,0.483,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.911:0.33,0.43,0.24 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.192:0.819,0.17,0.011 1|1:1.437:0.061,0.442,0.498 1|1:2:0,0,1 0|0:0.216:0.795,0.194,0.011 0|1:0.883:0.262,0.593,0.145 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 1|1:2:0,0,1 0|0:0.47:0.566,0.398,0.036 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.097:0.905,0.092,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.478:0.571,0.38,0.049 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.417:0.6,0.383,0.017 0|0:0.414:0.624,0.337,0.039 0|0:0.538:0.548,0.366,0.086 0|0:0:1,0,0 0|0:0.207:0.805,0.182,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.942,0.057,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.578:0.014,0.394,0.592 1|0:0.897:0.298,0.507,0.195 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.386:0.106,0.402,0.492 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.465:0.065,0.405,0.53 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.545:0.51,0.434,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.786,0.203,0.012 0|1:0.843:0.157,0.842,0 0|1:0.822:0.288,0.602,0.11 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.479:0.532,0.457,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.954:0.046,0.954,0 0|0:0.146:0.857,0.139,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.356:0.655,0.334,0.011 0|0:0:1,0,0 1|1:1.402:0.106,0.386,0.508 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.529:0.488,0.496,0.016 0|0:0:1,0,0 0|0:0.117:0.885,0.113,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.679:0.406,0.509,0.085 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.982:0.28,0.457,0.262 1|1:2:0,0,1 1|0:1.409:0.063,0.465,0.472 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.907,0.092,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.83:0.345,0.48,0.175 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0.5:0.522,0.456,0.022 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.805,0.18,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.302:0.128,0.442,0.43 0|0:0:1,0,0 0|0:0:1,0,0 +3 15140186 SNP-3.15138832. C A . PASS AR2=0.994;DR2=0.995;AF=0.306 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.129:0.873,0.125,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.081:0.921,0.078,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.111:0.89,0.109,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.043:0.957,0.043,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.851,0.145,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.857,0.133,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.906,0.094,0.001 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.871,0.126,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.956,0.042,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15141993 SNP-3.15140639. C A . PASS AR2=1;DR2=1;AF=0.276 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15142981 SNP-3.15141627. C A . PASS AR2=1;DR2=1;AF=0.286 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15145671 SNP-3.15144317. A G . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15146229 SNP-3.15144875. A G . 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C A . PASS AR2=1;DR2=1;AF=0.27 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.996:0.004,0.996,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15146784 SNP-3.15145430. A G . PASS AR2=0.995;DR2=0.995;AF=0.245 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.82:0.188,0.804,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.097:0.904,0.094,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.908,0.091,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.063:0.938,0.06,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.906,0.094,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15147681 SNP-3.15146327. C A . PASS AR2=1;DR2=1;AF=0.274 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15151367 SNP-3.15150013. C A . PASS AR2=0.995;DR2=0.997;AF=0.461 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.761:0.014,0.21,0.776 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.775:0.007,0.211,0.782 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.614:0.045,0.295,0.659 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0,0.048,0.951 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15151714 SNP-3.15150360. A G . PASS AR2=0.96;DR2=0.97;AF=0.432 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.102:0.01,0.878,0.112 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.68:0.025,0.27,0.705 1|1:2:0,0,1 1|1:1.724:0.016,0.244,0.74 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.268:0.088,0.557,0.355 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.88:0.004,0.112,0.884 1|0:1.209:0.161,0.468,0.371 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.004,0.118,0.878 1|1:1.748:0.015,0.221,0.764 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.001,0.072,0.926 1|1:1.717:0.056,0.171,0.773 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.271:0.115,0.499,0.386 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.655:0.03,0.285,0.685 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.753:0.017,0.213,0.77 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.446:0.075,0.403,0.522 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.883:0.002,0.112,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.374:0.092,0.442,0.466 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.002,0.123,0.875 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.011,0.252,0.737 1|1:2:0,0,1 1|1:1.806:0.024,0.146,0.83 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.671:0.014,0.302,0.684 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.003,0.11,0.886 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.022,0.185,0.793 1|1:1.94:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.563:0.021,0.395,0.584 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.539:0.037,0.387,0.576 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.762:0.02,0.198,0.782 0|0:0:1,0,0 1|1:1.73:0.002,0.267,0.731 1|1:1.582:0.056,0.306,0.638 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 +3 15154622 SNP-3.15153268. A G . PASS AR2=0.999;DR2=0.999;AF=0.369 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.003,0.14,0.858 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.938:0.001,0.061,0.938 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15155173 SNP-3.15153819. A G . PASS AR2=0.984;DR2=0.987;AF=0.406 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.823,0.172,0.006 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.304:0.719,0.258,0.023 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.753,0.224,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.852,0.138,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.924,0.075,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.22:0,0.78,0.22 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.298:0.725,0.253,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.857,0.138,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.202:0.808,0.182,0.01 0|0:0:1,0,0 1|0:0.307:0.717,0.259,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.816,0.175,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.269:0.746,0.239,0.015 0|0:0:1,0,0 0|0:0.273:0.745,0.237,0.018 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.127:0.885,0.103,0.012 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.752,0.232,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15155827 SNP-3.15154473. A G . PASS AR2=0.989;DR2=0.99;AF=0.34 GT:DS:GP 0|0:0.119:0.886,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.005,0.105,0.89 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 1|1:1.969:0,0.031,0.969 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.172:0.834,0.16,0.006 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.201:0.801,0.197,0.002 0|0:0:1,0,0 1|1:1.935:0.002,0.061,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.77,0.22,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.914:0.169,0.749,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.905,0.095,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.76,0.232,0.008 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.945:0.002,0.051,0.947 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.925:0.002,0.072,0.927 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.13:0.876,0.119,0.006 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15155951 SNP-3.15154597. A G . PASS AR2=0.998;DR2=0.998;AF=0.402 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.024:0.976,0.024,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.077:0.924,0.076,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.106:0.898,0.099,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15158042 SNP-3.15156688. C A . PASS AR2=0.992;DR2=0.992;AF=0.206 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.107:0.026,0.841,0.133 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.824,0.174,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|0:1.067:0.001,0.93,0.068 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.259:0.767,0.206,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.983:0.164,0.688,0.147 0|0:0:1,0,0 +3 15163259 SNP-3.15161905. A G . PASS AR2=0.967;DR2=0.973;AF=0.322 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.017,0.253,0.73 1|1:2:0,0,1 1|1:1.765:0.011,0.214,0.776 1|1:1.79:0.008,0.195,0.798 1|1:1.789:0.012,0.187,0.801 1|1:1.762:0.012,0.213,0.775 0|0:0:1,0,0 1|1:1.882:0.002,0.114,0.884 1|1:1.874:0.004,0.119,0.878 1|1:1.966:0,0.034,0.966 1|1:1.816:0.01,0.164,0.826 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0.008,0.22,0.772 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.007,0.173,0.82 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.06,0.939 1|1:2:0,0,1 1|1:1.875:0.002,0.12,0.878 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.871,0.123,0.006 0|0:0:1,0,0 1|0:0.502:0.523,0.452,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.574:0.514,0.399,0.087 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.092:0.91,0.088,0.002 1|1:2:0,0,1 0|0:0.2:0.808,0.184,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0.001,0.078,0.921 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.217:0.792,0.199,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.21:0.055,0.68,0.265 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.196:0.812,0.18,0.008 0|0:0:1,0,0 1|1:1.794:0.006,0.193,0.8 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.929,0.07,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.864:0.004,0.128,0.868 1|1:2:0,0,1 1|1:1.81:0.011,0.168,0.821 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:1.788:0.013,0.186,0.801 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.063:0.937,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.005,0.15,0.845 1|1:2:0,0,1 1|1:1.795:0.012,0.181,0.807 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.641:0.051,0.258,0.692 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.003,0.117,0.88 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15163904 SNP-3.15162550. A G . PASS AR2=0.989;DR2=0.99;AF=0.367 GT:DS:GP 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.002,0.084,0.914 1|1:1.939:0.002,0.057,0.941 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.929:0.001,0.069,0.93 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 1|1:1.929:0.002,0.068,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.002,0.072,0.926 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.942:0.001,0.057,0.943 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:1.904:0.002,0.091,0.907 1|1:2:0,0,1 1|1:1.929:0.002,0.068,0.931 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:1.909:0.004,0.084,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 1|1:1.867:0.004,0.125,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.002,0.088,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.002,0.093,0.905 0|0:0:1,0,0 1|0:0.823:0.177,0.823,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0,0.048,0.951 1|1:1.909:0.002,0.086,0.912 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.002,0.089,0.909 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.961 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.042,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0,0.048,0.952 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0.002,0.066,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.006,0.107,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.002,0.067,0.931 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15164146 SNP-3.15162792. A G . PASS AR2=0.997;DR2=0.997;AF=0.387 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.059,0 0|0:0.024:0.977,0.023,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.835,0.162,0.003 0|0:0:1,0,0 0|0:0.175:0.83,0.165,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.007:0.002,0.989,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.918,0.081,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15164772 SNP-3.15163418. A G . PASS AR2=0.999;DR2=0.999;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 0|1:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15165486 SNP-3.15164132. A G . PASS AR2=0.998;DR2=0.998;AF=0.39 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.163:0.844,0.148,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.838,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.16:0.847,0.146,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15165606 SNP-3.15164252. A G . PASS AR2=0.971;DR2=0.98;AF=0.442 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.71,0.271,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.439:0.593,0.375,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.795,0.203,0.002 0|0:0.482:0.584,0.351,0.066 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.892,0.108,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.458:0.543,0.457,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.35:0.001,0.648,0.351 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.077:0.927,0.069,0.004 0|0:0:1,0,0 0|0:0.396:0.643,0.319,0.039 1|0:0.833:0.342,0.484,0.174 0|0:0.057:0.944,0.055,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.689:0.411,0.489,0.1 1|0:0.646:0.466,0.422,0.112 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.641:0.463,0.433,0.104 0|0:0.061:0.94,0.059,0.001 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.079,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.52:0.557,0.365,0.078 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15165621 SNP-3.15164267. A G . PASS AR2=0.983;DR2=0.987;AF=0.362 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.785,0.208,0.007 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.902,0.096,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.728:0.018,0.235,0.747 1|1:1.708:0.019,0.253,0.728 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.018,0.229,0.753 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.732:0.015,0.237,0.747 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.783:0.008,0.202,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.462:0.56,0.419,0.021 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.749:0.015,0.22,0.764 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.715:0.021,0.244,0.735 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.114:0.892,0.102,0.006 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.728:0.021,0.231,0.748 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15165706 SNP-3.15164352. A G . PASS AR2=0.997;DR2=0.997;AF=0.378 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:1.991:0,0.009,0.991 0|1:1:0,1,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:1.999:0,0.001,0.999 1|1:1.998:0,0.002,0.998 1|1:1.968:0.001,0.029,0.969 1|1:1.991:0,0.008,0.991 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:1.867:0,0.132,0.867 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0.06:0.94,0.06,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.984 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.976 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15177294 SNP-3.15175940. A G . PASS AR2=0.993;DR2=0.995;AF=0.352 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.813:0.01,0.166,0.824 1|1:1.787:0.012,0.189,0.799 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.814:0.009,0.167,0.824 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.513:0.047,0.393,0.56 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.002,0.091,0.907 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.887:0.003,0.107,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15177335 SNP-3.15175981. A G . PASS AR2=0.994;DR2=0.995;AF=0.391 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0.051:0.95,0.049,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.897,0.098,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.002 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.062:0.938,0.061,0.001 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.874,0.118,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.859,0.134,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15178305 SNP-3.15176951. C A . PASS AR2=0.991;DR2=0.992;AF=0.211 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.941,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.095:0.081,0.744,0.176 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.968,0.031,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.842:0.01,0.138,0.852 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.91,0.089,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:0.858:0.257,0.628,0.115 0|0:0:1,0,0 +3 15178849 SNP-3.15177495. A G . PASS AR2=0.974;DR2=0.979;AF=0.291 GT:DS:GP 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.732:0.023,0.222,0.755 1|1:2:0,0,1 1|1:1.409:0.032,0.528,0.44 1|1:1.835:0.01,0.145,0.845 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.007,0.142,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.009,0.157,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.29:0.027,0.656,0.317 0|1:0.911:0.303,0.483,0.214 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.546:0.033,0.387,0.58 1|1:1.814:0.002,0.183,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.005,0.096,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.004,0.114,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.658:0.015,0.311,0.674 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 1|1:1.768:0.014,0.204,0.782 1|1:1.901:0.001,0.098,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.005,0.135,0.86 1|1:1.806:0.012,0.169,0.818 1|1:2:0,0,1 1|1:1.815:0.008,0.169,0.823 1|1:2:0,0,1 1|1:1.823:0.012,0.153,0.835 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.009,0.137,0.854 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.173:0.07,0.687,0.243 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.012,0.174,0.813 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15178882 SNP-3.15177528. C A . PASS AR2=0.933;DR2=0.948;AF=0.248 GT:DS:GP 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.684:0.464,0.389,0.148 0|0:0.279:0.738,0.246,0.017 0|0:0:1,0,0 0|0:0.312:0.719,0.25,0.031 0|0:0:1,0,0 0|0:0.449:0.601,0.348,0.05 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.846,0.149,0.004 0|0:0.074:0.927,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.816,0.183,0.001 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.956,0.044,0 1|1:2:0,0,1 0|0:0.385:0.662,0.292,0.047 0|0:0.126:0.875,0.123,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|1:0.674:0.439,0.448,0.113 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.711:0.007,0.276,0.718 1|0:1.73:0.018,0.234,0.748 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 0|1:0.998:0.243,0.516,0.241 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.003,0.064,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.578:0.046,0.33,0.624 0|0:0:1,0,0 1|1:1.562:0.05,0.338,0.612 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|1:0.777:0.375,0.472,0.153 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.631:0.035,0.298,0.666 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.762:0.379,0.481,0.141 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0 0|1:0.821:0.353,0.474,0.174 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 0|1:0.933:0.325,0.418,0.258 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:1.964:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|1:0.845:0.157,0.84,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.926,0.071,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.333:0.693,0.28,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.368:0.665,0.302,0.033 1|1:2:0,0,1 0|0:0.586:0.503,0.407,0.089 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.008,0.112,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 0|0:0.19:0.837,0.135,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.373:0.673,0.281,0.046 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.031,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15180161 SNP-3.15178807. C A . PASS AR2=0.948;DR2=0.96;AF=0.264 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.011,0.138,0.852 1|1:2:0,0,1 1|1:1.852:0.009,0.129,0.862 1|1:1.841:0.011,0.138,0.852 1|1:2:0,0,1 1|1:1.778:0.012,0.197,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.793:0.012,0.184,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.268:0.126,0.479,0.394 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|1:0.992:0.218,0.571,0.211 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|0:1.431:0.084,0.401,0.515 1|1:1.588:0.031,0.35,0.619 0|0:0:1,0,0 0|1:1.008:0.26,0.472,0.268 1|1:1.764:0.013,0.21,0.777 1|1:1.355:0.088,0.468,0.443 1|1:1.401:0.081,0.436,0.482 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.647:0.038,0.278,0.685 1|0:1.23:0.132,0.506,0.362 1|1:1.572:0.048,0.333,0.619 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.791:0.012,0.185,0.803 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.003,0.091,0.906 0|0:0:1,0,0 0|1:1.271:0.139,0.451,0.41 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.744:0.015,0.225,0.759 0|0:0:1,0,0 0|1:1.421:0.081,0.417,0.502 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.003,0.042,0.956 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.607:0.042,0.308,0.649 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.009,0.144,0.847 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.119:0.89,0.1,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.478:0.075,0.372,0.553 0|0:0:1,0,0 +3 15180305 SNP-3.15178951. A G . PASS AR2=0.942;DR2=0.955;AF=0.248 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.357:0.07,0.504,0.426 1|0:1.165:0.112,0.61,0.278 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.307:0.081,0.531,0.388 0|1:1.413:0.05,0.486,0.463 1|1:2:0,0,1 1|1:1.703:0.017,0.262,0.721 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.606:0.048,0.298,0.654 1|1:1.349:0.087,0.476,0.436 0|0:0.715:0.447,0.39,0.162 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.231:0.782,0.205,0.013 0|0:0:1,0,0 0|0:0.118:0.886,0.109,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.834,0.161,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.827,0.166,0.007 0|0:0:1,0,0 0|0:0.075:0.926,0.073,0.001 1|1:2:0,0,1 0|1:1.26:0.057,0.625,0.318 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.26:0.007,0.726,0.267 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.846,0.146,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.145:0.862,0.131,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.817,0.175,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.823,0.169,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.297:0.102,0.5,0.398 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.092:0.125,0.658,0.217 0|0:0:1,0,0 0|0:0.297:0.72,0.263,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.005,0.106,0.889 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.741:0.021,0.217,0.762 0|1:0.869:0.306,0.519,0.175 0|1:1.294:0.019,0.667,0.314 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0.001,0.024,0.976 1|1:2:0,0,1 1|1:1.501:0.114,0.272,0.615 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.004,0.101,0.895 0|0:0:1,0,0 0|0:0.978:0.313,0.396,0.291 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.004,0.084,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15180782 SNP-3.15179428. C A . PASS AR2=0.92;DR2=0.94;AF=0.295 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.543:0.465,0.527,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.123:0.2,0.477,0.323 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.841,0.15,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.995:0.231,0.542,0.226 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.304:0.712,0.273,0.015 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.291:0.145,0.419,0.436 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.212:0.155,0.478,0.367 0|0:0:1,0,0 1|0:0.62:0.387,0.606,0.007 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:1.79:0.004,0.201,0.795 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.268:0.124,0.484,0.392 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.002,0.052,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.988:0.262,0.488,0.25 0|0:0:1,0,0 1|1:1.804:0.014,0.169,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.245:0.158,0.439,0.403 0|0:0:1,0,0 0|0:0.158:0.859,0.125,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.901:0.313,0.472,0.215 0|0:0.603:0.406,0.585,0.009 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.929:0.321,0.429,0.25 1|1:2:0,0,1 1|1:1.914:0.002,0.082,0.916 1|1:1.91:0.001,0.088,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.01,0.989 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.061,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0.001,0.031,0.968 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.588:0.494,0.424,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.529:0.541,0.388,0.07 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.39:0.098,0.414,0.488 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.43:0.624,0.323,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.757:0.018,0.207,0.775 1|1:1.261:0.178,0.383,0.439 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.423:0.095,0.388,0.518 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.222:0.152,0.475,0.373 0|0:0:1,0,0 0|0:0.468:0.621,0.289,0.09 0|1:1.076:0.244,0.436,0.32 1|1:1.361:0.106,0.426,0.467 0|0:0:1,0,0 0|0:0.836:0.378,0.408,0.214 1|1:2:0,0,1 1|1:1.817:0.031,0.122,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.852:0.005,0.139,0.857 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 +3 15181560 SNP-3.15180206. A G . PASS AR2=0.99;DR2=0.992;AF=0.297 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.725:0.027,0.221,0.752 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.016,0.19,0.794 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.017,0.163,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.851,0.149,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.16:0.84,0.16,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.543:0.069,0.32,0.611 1|1:2:0,0,1 1|1:1.952:0.001,0.045,0.953 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.016,0.198,0.786 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15181674 SNP-3.15180320. C A . PASS AR2=0.99;DR2=0.992;AF=0.284 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.395:0.032,0.541,0.427 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:1.873:0.003,0.12,0.876 1|1:1.894:0.001,0.103,0.895 0|0:0:1,0,0 1|1:1.547:0.068,0.317,0.615 1|1:1.985:0,0.015,0.985 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.054,0.944 1|1:2:0,0,1 1|1:1.935:0.001,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.959:0,0.04,0.959 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.002,0.095,0.903 1|1:1.783:0.009,0.199,0.792 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15182020 SNP-3.15180666. C A . PASS AR2=0.999;DR2=0.999;AF=0.299 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:1.843:0,0.157,0.843 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 +3 15182293 SNP-3.15180939. C A . PASS AR2=0.981;DR2=0.985;AF=0.285 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.593:0.048,0.312,0.64 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.642:0.034,0.29,0.676 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.034,0.352,0.614 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.769:0.013,0.205,0.782 1|1:1.736:0.01,0.243,0.747 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.007,0.147,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.004,0.132,0.864 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.706:0.018,0.259,0.724 1|1:1.635:0.032,0.302,0.666 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.751:0.025,0.199,0.776 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.011,0.989 1|1:2:0,0,1 1|1:1.642:0.025,0.309,0.666 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.009,0.117,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15183245 SNP-3.15181891. A G . PASS AR2=0.996;DR2=0.997;AF=0.391 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.75,0.24,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.884,0.116,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.299:0.709,0.284,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15183327 SNP-3.15181973. A G . PASS AR2=0.981;DR2=0.984;AF=0.349 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.878,0.114,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.695:0.053,0.199,0.748 0|0:0:1,0,0 1|1:1.821:0.01,0.159,0.831 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.802:0.013,0.172,0.815 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.552:0.019,0.41,0.571 1|1:1.817:0.008,0.166,0.826 0|1:1:0,1,0 1|1:1.823:0.009,0.159,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.801:0.003,0.192,0.804 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.006,0.141,0.853 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.945 1|1:1.88:0.007,0.107,0.887 1|1:1.642:0.033,0.292,0.675 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.854:0.007,0.132,0.861 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.78:0.011,0.199,0.79 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.795:0.013,0.18,0.808 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.002,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.007,0.117,0.876 1|1:2:0,0,1 1|1:1.858:0.004,0.133,0.862 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.791:0.012,0.185,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.951 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.002,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15183542 SNP-3.15182188. A G . PASS AR2=0.974;DR2=0.981;AF=0.432 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.639:0.464,0.434,0.102 0|0:0.007:0.993,0.007,0 0|0:0.5:0.562,0.377,0.062 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.302:0.706,0.286,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.121:0.883,0.112,0.004 1|0:0.745:0.34,0.574,0.086 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.795,0.191,0.014 0|1:0.813:0.368,0.451,0.181 0|0:0.251:0.765,0.219,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.219:0.784,0.214,0.002 0|0:0.208:0.803,0.186,0.011 1|1:2:0,0,1 0|0:0.099:0.905,0.091,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.591:0.497,0.415,0.088 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.376:0.662,0.299,0.039 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.93,0.07,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|0:0.061:0.94,0.06,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.496:0.58,0.345,0.076 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15185690 SNP-3.15184336. A G . PASS AR2=0.99;DR2=0.992;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.453:0.066,0.416,0.519 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.756:0.004,0.236,0.76 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.002,0.079,0.92 1|1:1.954:0.001,0.045,0.954 1|0:1:0,1,0 1|1:1.937:0.001,0.06,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.008,0.16,0.832 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.002,0.075,0.923 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.001,0.074,0.926 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.002,0.06,0.938 1|1:2:0,0,1 1|1:1.948:0.002,0.048,0.95 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.887:0.002,0.109,0.889 1|1:1.811:0.007,0.175,0.818 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15185780 SNP-3.15184426. A G . 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A G . PASS AR2=0.999;DR2=0.999;AF=0.379 GT:DS:GP 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.996:0,0.004,0.996 1|1:1.995:0,0.005,0.995 1|1:1.997:0,0.003,0.997 1|1:1.997:0,0.003,0.997 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.993:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.997:0,0.003,0.997 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:1.998:0,0.002,0.998 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15186576 SNP-3.15185222. A G . PASS AR2=0.994;DR2=0.995;AF=0.315 GT:DS:GP 0|0:0:1,0,0 0|0:0.063:0.942,0.053,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.976:0,0.024,0.976 1|1:1.978:0,0.021,0.979 1|1:1.96:0,0.039,0.961 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:1.968:0,0.031,0.969 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0,0.047,0.953 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.706:0.003,0.288,0.709 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:1.968:0,0.031,0.968 1|1:1.971:0,0.029,0.971 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.982:0,0.018,0.982 1|1:1.79:0.006,0.197,0.797 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 +3 15187562 SNP-3.15186208. A G . PASS AR2=0.875;DR2=0.905;AF=0.287 GT:DS:GP 1|1:0.99:0.271,0.468,0.261 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.255:0.225,0.295,0.48 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.633:0.492,0.384,0.125 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.319:0.084,0.512,0.403 1|1:2:0,0,1 1|0:0.84:0.321,0.517,0.162 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.378:0.682,0.257,0.061 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.76:0.028,0.185,0.787 1|1:2:0,0,1 1|1:1.453:0.051,0.445,0.504 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.985:0.249,0.518,0.234 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.455:0.081,0.383,0.536 0|1:0.985:0.238,0.538,0.223 1|1:2:0,0,1 1|1:0.946:0.274,0.505,0.22 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.538:0.53,0.402,0.068 1|1:1.504:0.047,0.402,0.551 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.555:0.457,0.53,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.239:0.14,0.481,0.379 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.85:0.349,0.453,0.199 0|0:0:1,0,0 0|0:0.322:0.7,0.277,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.498:0.59,0.323,0.087 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.275:0.131,0.463,0.406 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.352:0.112,0.423,0.465 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.143:0.174,0.509,0.317 0|0:0:1,0,0 1|0:0.825:0.269,0.636,0.094 0|0:0.368:0.669,0.294,0.037 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.828:0.327,0.517,0.156 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.513:0.559,0.369,0.072 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.249:0.122,0.506,0.372 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.08:0.143,0.634,0.223 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.706:0.415,0.464,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.128:0.155,0.562,0.283 1|1:2:0,0,1 0|0:0.064:0.938,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.015:0.231,0.523,0.246 0|0:0:1,0,0 0|1:0.887:0.303,0.507,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.138:0.163,0.537,0.301 0|1:0.586:0.455,0.503,0.041 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.388:0.089,0.435,0.477 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.612:0.471,0.445,0.083 1|1:1.152:0.173,0.503,0.325 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.708:0.473,0.347,0.181 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.942,0.053,0.005 0|0:0:1,0,0 0|0:0.229:0.79,0.191,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.585:0.509,0.397,0.094 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.811:0.339,0.51,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.106:0.212,0.469,0.319 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.323:0.705,0.266,0.028 +3 15187944 SNP-3.15186590. A G . PASS AR2=0.989;DR2=0.992;AF=0.255 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.178:0.14,0.541,0.319 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.34:0.118,0.423,0.458 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.003,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.886:0.321,0.471,0.207 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15188301 SNP-3.15186947. A G . PASS AR2=0.985;DR2=0.987;AF=0.362 GT:DS:GP 1|1:1.85:0.007,0.137,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.876,0.12,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.773,0.194,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.901,0.095,0.004 0|0:0:1,0,0 0|0:0.122:0.881,0.116,0.003 0|0:0.074:0.928,0.07,0.002 1|0:1:0,1,0 1|1:1.974:0,0.026,0.974 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.833:0.007,0.152,0.84 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.787:0.011,0.192,0.797 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.002,0.127,0.87 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.406:0.038,0.517,0.445 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.951 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.816:0.008,0.169,0.824 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.936:0.001,0.061,0.938 1|1:2:0,0,1 1|1:1.961:0,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0.001,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 1|1:1.944:0,0.055,0.944 0|1:1:0,1,0 1|1:2:0,0,1 +3 15189650 SNP-3.15188296. A G . PASS AR2=0.971;DR2=0.976;AF=0.427 GT:DS:GP 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.88:0.264,0.591,0.145 0|0:0.306:0.716,0.262,0.022 0|0:0.335:0.691,0.283,0.026 0|0:0.407:0.641,0.311,0.048 0|0:0.136:0.868,0.127,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.377:0.656,0.312,0.033 0|0:0:1,0,0 0|0:0.269:0.749,0.233,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0.229:0.784,0.203,0.013 0|0:0:1,0,0 0|0:0.217:0.795,0.193,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.404:0.636,0.324,0.04 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 0|0:0.061:0.94,0.058,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:1.969:0,0.03,0.969 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0.244:0.757,0.242,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.221:0.787,0.205,0.008 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.206:0.805,0.184,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.804,0.183,0.012 1|1:1.951:0.001,0.048,0.952 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:1.973:0,0.026,0.974 1|1:1.953:0,0.046,0.954 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.204:0.808,0.179,0.012 1|1:2:0,0,1 0|0:0.229:0.784,0.203,0.013 0|0:0.232:0.782,0.205,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.855:0.269,0.606,0.125 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.779,0.207,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.003,0.063,0.934 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.142,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 +3 15189903 SNP-3.15188549. A G . PASS AR2=0.993;DR2=0.994;AF=0.334 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.093:0.909,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|1:1:0,1,0 0|0:0.079:0.923,0.076,0.001 0|0:0.087:0.915,0.083,0.002 0|0:0.104:0.899,0.097,0.003 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.862:0,0.137,0.862 0|0:0:1,0,0 0|0:0.128:0.872,0.127,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.054,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.921,0.075,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 +3 15190247 SNP-3.15188893. C A . PASS AR2=0.988;DR2=0.99;AF=0.274 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.787:0.017,0.179,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.902,0.098,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.879:0.121,0.879,0 1|1:1.768:0.014,0.204,0.782 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.756:0.015,0.213,0.771 1|1:1.779:0.012,0.196,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.009,0.146,0.845 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.585:0.032,0.351,0.617 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.77:0.019,0.192,0.789 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.794:0.016,0.174,0.81 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15194289 SNP-3.15192935. A G . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15194367 SNP-3.15193013. A G . PASS AR2=0.994;DR2=0.996;AF=0.377 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.457:0.014,0.516,0.471 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.025:0.975,0.025,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.97 1|1:1.947:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.609:0.391,0.609,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.916:0.002,0.081,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.035,0.964 1|1:1.946:0.001,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 +3 15199663 SNP-3.15198309. A G . PASS AR2=0.986;DR2=0.99;AF=0.352 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.663:0.013,0.312,0.675 1|0:1.272:0.017,0.693,0.289 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 1|1:1.862:0.004,0.129,0.867 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.489:0.016,0.478,0.505 1|1:1.864:0.004,0.128,0.868 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.899:0.007,0.088,0.905 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.626:0.015,0.344,0.641 1|1:2:0,0,1 0|1:1.016:0.083,0.818,0.099 1|1:1.862:0.004,0.129,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.01,0.385,0.605 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:1.934:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15199752 SNP-3.15198398. A G . PASS AR2=0.991;DR2=0.993;AF=0.306 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.867:0.006,0.122,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.002,0.057,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.004,0.106,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.77:0.004,0.222,0.774 1|1:1.974:0,0.025,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.001,0.107,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.997:0.005,0.993,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.003,0.093,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.017,0.118,0.865 1|1:1.949:0.001,0.048,0.95 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.435:0.082,0.402,0.516 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.002,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15199829 SNP-3.15198475. A G . PASS AR2=0.999;DR2=0.999;AF=0.384 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.87,0.127,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15201959 SNP-3.15200605. A G . PASS AR2=0.981;DR2=0.988;AF=0.282 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.017,0.084,0.899 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.378:0.064,0.494,0.442 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.641:0.464,0.431,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.632:0.469,0.429,0.102 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.806:0.383,0.429,0.188 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.641:0.464,0.431,0.105 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15202420 SNP-3.15201066. A G . PASS AR2=0.924;DR2=0.941;AF=0.449 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.445:0.61,0.335,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.91,0.084,0.006 0|0:0.14:0.869,0.122,0.009 0|0:0:1,0,0 1|0:0.363:0.67,0.296,0.034 0|0:0.285:0.733,0.249,0.018 0|0:0.353:0.679,0.288,0.032 0|1:0.741:0.41,0.44,0.15 0|0:0:1,0,0 0|0:0.622:0.473,0.432,0.095 0|0:0:1,0,0 0|0:0.25:0.769,0.212,0.019 1|0:0.838:0.307,0.548,0.145 0|0:0:1,0,0 0|0:0.168:0.841,0.15,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.105:0.897,0.1,0.003 1|1:2:0,0,1 1|0:0.528:0.531,0.41,0.059 0|1:0.454:0.602,0.343,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.666:0.443,0.448,0.109 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.007,0.173,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.003,0.074,0.924 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.703:0.023,0.251,0.726 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.685:0.023,0.27,0.708 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.36:0.64,0.36,0 1|1:1.726:0.018,0.238,0.744 0|0:0.137:0.872,0.119,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.724:0.019,0.237,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.38:0.684,0.252,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.924,0.076,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.855,0.141,0.004 0|0:0.156:0.849,0.146,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.147:0.86,0.133,0.007 0|0:0.082:0.92,0.079,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.279:0.744,0.233,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.372:0.647,0.334,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.734:0.018,0.23,0.752 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0.307:0.721,0.251,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.148,0.006 0|0:0.164:0.844,0.149,0.008 0|0:0.305:0.727,0.24,0.033 1|1:2:0,0,1 0|0:0.259:0.766,0.209,0.025 1|1:2:0,0,1 0|0:0.32:0.701,0.278,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0.001 1|1:1.97:0,0.03,0.97 0|0:0.274:0.755,0.215,0.029 1|1:1.942:0.001,0.056,0.943 1|1:1.886:0.005,0.105,0.89 0|0:0:1,0,0 0|0:0.379:0.648,0.325,0.027 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.497:0.588,0.327,0.085 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.566:0.51,0.415,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.002,0.089,0.909 0|0:0:1,0,0 1|1:1.923:0.002,0.073,0.925 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.433:0.615,0.338,0.047 0|0:0.353:0.678,0.292,0.031 1|1:2:0,0,1 0|0:0.539:0.535,0.391,0.074 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.76,0.21,0.029 0|0:0:1,0,0 1|1:1.745:0.015,0.225,0.76 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.294:0.728,0.25,0.022 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0.087:0.915,0.083,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.383:0.665,0.287,0.048 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.85:0.005,0.14,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.868,0.123,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.774,0.199,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.215:0.157,0.47,0.373 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.95,0.049,0.002 1|1:2:0,0,1 +3 15206365 SNP-3.15205011. A G . PASS AR2=0.946;DR2=0.957;AF=0.33 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.014,0.242,0.744 0|0:0:1,0,0 1|1:1.677:0.021,0.281,0.698 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.549:0.05,0.351,0.599 1|0:1.574:0.045,0.336,0.619 1|1:2:0,0,1 1|1:1.648:0.029,0.293,0.678 1|1:1.622:0.03,0.317,0.653 1|1:2:0,0,1 0|1:1.41:0.083,0.424,0.493 1|1:1.825:0.007,0.162,0.831 1|1:1.575:0.046,0.333,0.621 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.755:0.01,0.224,0.765 0|0:0:1,0,0 1|1:1.615:0.04,0.305,0.655 1|1:2:0,0,1 1|1:1.634:0.034,0.297,0.668 1|1:2:0,0,1 1|1:1.597:0.042,0.319,0.639 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.004,0.113,0.883 1|1:1.808:0.015,0.162,0.823 1|1:1.852:0.006,0.136,0.858 1|1:1.784:0.018,0.18,0.802 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.007,0.135,0.858 0|0:0:1,0,0 0|1:0.973:0.027,0.973,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.645:0.031,0.292,0.676 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.564:0.046,0.345,0.609 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.008,0.189,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.519:0.056,0.37,0.575 0|0:0:1,0,0 1|1:1.677:0.024,0.275,0.701 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.007,0.149,0.844 1|1:1.79:0.011,0.187,0.802 1|1:2:0,0,1 1|1:1.942:0,0.057,0.943 1|1:1.892:0.003,0.101,0.896 1|1:1.731:0.018,0.232,0.75 1|1:1.806:0.011,0.171,0.817 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.584:0.044,0.327,0.629 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.006,0.102,0.893 1|0:1.046:0.131,0.692,0.177 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.036,0.305,0.658 0|0:0:1,0,0 1|1:1.549:0.048,0.355,0.597 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.003,0.104,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0.001,0.019,0.98 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:1.809:0.009,0.172,0.819 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.773:0.013,0.201,0.786 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.001,0.082,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.003,0.088,0.908 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 +3 15208339 SNP-3.15206985. C A . PASS AR2=0.996;DR2=0.997;AF=0.217 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.407:0.597,0.399,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.969:0.038,0.955,0.007 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15208375 SNP-3.15207021. A G . PASS AR2=1;DR2=1;AF=0.28 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15208508 SNP-3.15207154. A G . PASS AR2=0.999;DR2=0.999;AF=0.373 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.001,0.069,0.93 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15210667 SNP-3.15209313. C A . PASS AR2=0.987;DR2=0.989;AF=0.33 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.41:0.611,0.368,0.021 0|0:0.064:0.938,0.061,0.001 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.081:0.921,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.77,0.225,0.005 0|0:0.082:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.883,0.115,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.112:0.89,0.108,0.002 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0.09:0.912,0.087,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.064:0.937,0.063,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.077:0.924,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.453:0.578,0.392,0.03 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.965,0.034,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15210787 SNP-3.15209433. A G . PASS AR2=0.996;DR2=0.997;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.87,0.128,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.002,0.084,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.005,0.17,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.002,0.075,0.923 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.052,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15212642 SNP-3.15211288. C A . PASS AR2=0.939;DR2=0.945;AF=0.494 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.539:0.116,0.229,0.655 1|0:0.928:0.28,0.513,0.208 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.984:0.255,0.506,0.239 1|0:0.882:0.31,0.498,0.192 1|0:0.9:0.299,0.501,0.199 1|0:0.792:0.365,0.479,0.156 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.403:0.131,0.334,0.535 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.007:0,0.993,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.831:0.346,0.478,0.177 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.837:0.342,0.479,0.179 0|1:0.933:0.285,0.497,0.218 0|1:1:0,1,0 1|0:1.059:0.224,0.494,0.283 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.396:0.111,0.383,0.506 0|1:0.918:0.291,0.501,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.115:0.2,0.485,0.315 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.936:0.285,0.494,0.221 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.833:0.344,0.479,0.177 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.845:0.337,0.482,0.181 1|0:1:0,1,0 0|1:0.801:0.362,0.476,0.162 0|1:0.958:0.275,0.491,0.234 0|0:0:1,0,0 0|1:0.842:0.335,0.487,0.178 0|0:0:1,0,0 1|0:0.878:0.316,0.489,0.195 1|1:2:0,0,1 1|0:0.838:0.34,0.482,0.178 0|1:0.954:0.279,0.488,0.233 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.762:0.383,0.473,0.144 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15212918 SNP-3.15211564. A G . PASS AR2=0.991;DR2=0.992;AF=0.41 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.045:0.955,0.044,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.951:0.001,0.047,0.952 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.602:0.421,0.556,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.878:0.154,0.815,0.032 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.86:0.005,0.13,0.865 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.032:0.968,0.032,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.005:0.995,0.005,0 0|0:0.025:0.975,0.025,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:1.994:0,0.006,0.994 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0.062:0.941,0.057,0.002 0|0:0:1,0,0 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.843:0.007,0.143,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.002 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.004,0.108,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.227:0.03,0.714,0.256 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15214904 SNP-3.15213550. A G . PASS AR2=0.995;DR2=0.996;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.186:0.816,0.183,0.002 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.067,0 0|0:0.232:0.783,0.201,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.051:0.951,0.047,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.788,0.206,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15215501 SNP-3.15214147. A G . PASS AR2=0.999;DR2=0.999;AF=0.387 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.909,0.089,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15215914 SNP-3.15214560. C A . PASS AR2=1;DR2=1;AF=0.302 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15216651 SNP-3.15215297. C A . PASS AR2=1;DR2=1;AF=0.208 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15219769 SNP-3.15218415. C A . PASS AR2=0.999;DR2=0.999;AF=0.299 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0,0.169,0.831 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15222669 SNP-3.15221315. A G . PASS AR2=1;DR2=1;AF=0.385 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15222691 SNP-3.15221337. C A . PASS AR2=0.986;DR2=0.989;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.297:0.724,0.254,0.021 0|0:0.093:0.91,0.087,0.003 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.19:0.818,0.173,0.008 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.139:0.868,0.126,0.006 0|0:0.192:0.817,0.173,0.01 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.091:0,0.909,0.091 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.811,0.18,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.798,0.19,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.188:0.822,0.168,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.249:0.768,0.216,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.502:0.62,0.257,0.123 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15223329 SNP-3.15221975. A G . PASS AR2=1;DR2=1;AF=0.391 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15224013 SNP-3.15222659. A G . PASS AR2=0.998;DR2=0.998;AF=0.382 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.912,0.088,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0,0.088,0.912 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.058:0.942,0.058,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15224158 SNP-3.15222804. A G . PASS AR2=1;DR2=1;AF=0.327 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.013:0,0.987,0.013 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15224552 SNP-3.15223198. C A . PASS AR2=1;DR2=1;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15224739 SNP-3.15223385. A G . PASS AR2=0.997;DR2=0.997;AF=0.363 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.007,0.127,0.865 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.885:0.004,0.107,0.889 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.004,0.104,0.892 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15225273 SNP-3.15223919. A G . PASS AR2=0.993;DR2=0.994;AF=0.388 GT:DS:GP 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.872,0.122,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.923,0.077,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.331:0.767,0.135,0.098 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 1|1:1.921:0,0.079,0.921 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.055:0.945,0.054,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15225820 SNP-3.15224466. A G . PASS AR2=0.984;DR2=0.987;AF=0.416 GT:DS:GP 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.245:0.771,0.214,0.016 0|0:0.177:0.832,0.159,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.83,0.162,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.842,0.154,0.004 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0.184:0.825,0.166,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.107:0.895,0.102,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.279:0.742,0.237,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.188:0.819,0.174,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.222:0.791,0.197,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.206:0.805,0.185,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.72:0.327,0.627,0.047 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.246:0.77,0.215,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.095:0.911,0.083,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.794,0.198,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.772,0.204,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 +3 15226647 SNP-3.15225293. A G . PASS AR2=0.99;DR2=0.992;AF=0.431 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.366:0.636,0.361,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.385:0.671,0.273,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.959 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.633:0.004,0.359,0.637 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0,0.093,0.906 1|1:2:0,0,1 1|1:1.913:0.001,0.084,0.914 1|1:1.978:0,0.022,0.978 1|1:1.708:0.014,0.264,0.722 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.957 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.06,0.939 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.889:0.001,0.11,0.889 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.162:0.845,0.148,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.942:0,0.057,0.943 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 +3 15233433 SNP-3.15232079. C A . PASS AR2=0.956;DR2=0.965;AF=0.274 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.878,0.116,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.873,0.127,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.098:0.909,0.084,0.007 1|0:1:0,1,0 0|0:0.227:0.785,0.202,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.764,0.219,0.016 0|0:0.225:0.788,0.198,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.778,0.209,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.241:0.776,0.208,0.016 0|0:0.584:0.573,0.27,0.157 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.791,0.198,0.011 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.205:0.804,0.186,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.004,0.127,0.869 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.865:0.004,0.127,0.869 1|1:1.882:0.006,0.106,0.888 0|0:0:1,0,0 1|1:1.784:0.015,0.186,0.799 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.681:0.417,0.484,0.099 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.551:0.083,0.283,0.634 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0.002,0.073,0.926 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.242:0.773,0.213,0.014 0|0:0.242:0.771,0.216,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.223:0.791,0.195,0.014 0|0:0:1,0,0 0|0:0.238:0.776,0.211,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.179:0.83,0.161,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.827,0.163,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.2:0.813,0.175,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.811,0.177,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.82,0.168,0.012 0|0:0.183:0.827,0.164,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.19:0.818,0.173,0.008 0|0:0:1,0,0 0|0:0.205:0.808,0.18,0.012 0|0:0:1,0,0 0|0:0.306:0.719,0.255,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.161:0.848,0.144,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|1:1:0,1,0 +3 15233559 SNP-3.15232205. A G . PASS AR2=0.911;DR2=0.937;AF=0.337 GT:DS:GP 0|1:0.884:0.188,0.74,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.28:0.74,0.24,0.02 0|1:0.459:0.593,0.356,0.051 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.128:0.877,0.118,0.005 0|0:0.177:0.835,0.154,0.012 0|0:0.153:0.851,0.146,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.237:0.774,0.216,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.528:0.06,0.353,0.587 1|1:1.544:0.048,0.361,0.592 1|1:1.611:0.039,0.312,0.65 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.116:0.889,0.107,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.597:0.048,0.307,0.645 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.476:0.066,0.391,0.542 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.551:0.055,0.339,0.606 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.964:0.096,0.843,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.381:0.086,0.447,0.467 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.209:0.139,0.512,0.349 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0,0.093,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.423:0.622,0.333,0.045 1|0:1:0,1,0 0|0:0.46:0.597,0.346,0.057 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.835,0.16,0.005 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.544:0.084,0.287,0.628 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.432:0.614,0.34,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.387:0.651,0.312,0.038 0|0:0:1,0,0 0|0:0.355:0.674,0.297,0.029 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.506:0.061,0.372,0.567 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.396:0.642,0.319,0.038 1|1:1.574:0.044,0.337,0.618 0|0:0.388:0.651,0.31,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.366:0.664,0.306,0.03 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.863,0.131,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.426:0.088,0.399,0.514 0|0:0:1,0,0 0|0:0.133:0.872,0.124,0.004 0|0:0.375:0.664,0.297,0.039 0|0:0.304:0.722,0.253,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.641:0.482,0.396,0.123 0|0:0.354:0.679,0.288,0.033 0|0:0.358:0.676,0.29,0.034 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.319:0.708,0.266,0.027 1|0:0.524:0.547,0.382,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.882,0.111,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.555:0.049,0.347,0.604 1|0:1.555:0.052,0.34,0.607 0|0:0:1,0,0 1|1:2:0,0,1 +3 15234063 SNP-3.15232709. C A . PASS AR2=0.967;DR2=0.976;AF=0.311 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.789:0.016,0.18,0.804 1|0:1:0,1,0 1|1:1.701:0.023,0.254,0.724 1|1:1.776:0.015,0.193,0.792 1|1:1.742:0.019,0.22,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.004,0.079,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.384:0.654,0.309,0.038 1|1:1.744:0.019,0.218,0.763 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.386:0.653,0.309,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.689:0.025,0.261,0.714 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.432:0.617,0.335,0.048 1|1:1.935:0.002,0.062,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.372:0.658,0.311,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.639,0.319,0.041 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.379:0.658,0.304,0.038 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.446:0.605,0.343,0.051 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.187:0.821,0.172,0.008 1|1:1.901:0.001,0.098,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.82:0.012,0.155,0.833 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.411:0.632,0.324,0.043 0|0:0.368:0.666,0.299,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15235833 SNP-3.15234479. A G . PASS AR2=0.996;DR2=0.996;AF=0.399 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0.117:0.886,0.111,0.003 0|1:1:0,1,0 0|0:0.058:0.943,0.057,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.086:0.916,0.081,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.937,0.061,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.065,0.001 0|0:0.133:0.871,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15239794 SNP-3.15238440. A G . PASS AR2=0.922;DR2=0.94;AF=0.27 GT:DS:GP 1|0:0.711:0.406,0.477,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.631:0.458,0.453,0.089 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.016:0.144,0.695,0.16 1|1:2:0,0,1 1|0:1.098:0.185,0.531,0.283 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.032,0.379,0.59 0|0:0:1,0,0 0|0:0.829:0.338,0.495,0.167 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.211:0.183,0.422,0.395 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.756:0.388,0.469,0.144 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.846:0.33,0.495,0.176 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.503:0.547,0.402,0.051 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.818:0.346,0.491,0.163 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.707:0.409,0.474,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.669:0.387,0.557,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.499:0.563,0.375,0.062 0|0:0.793:0.351,0.504,0.145 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.964:0.234,0.569,0.198 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.898:0.003,0.097,0.9 1|1:1.169:0.174,0.483,0.343 1|1:1.675:0.022,0.281,0.697 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.322:0.697,0.284,0.019 1|0:1.462:0.069,0.4,0.531 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.714:0.411,0.464,0.125 0|0:0.288:0.712,0.288,0 0|0:0.583:0.511,0.395,0.094 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.582:0.496,0.425,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.71:0.418,0.455,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.414:0.089,0.408,0.503 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.784:0.36,0.495,0.144 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0.09,0.226,0.684 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15241687 SNP-3.15240333. C A . PASS AR2=0.993;DR2=0.994;AF=0.318 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.125:0.879,0.118,0.003 0|0:0.204:0.798,0.2,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0.052:0.949,0.05,0.001 0|1:1:0,1,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.954,0.046,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.905,0.094,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.386:0,0.614,0.386 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.05,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15254129 SNP-3.15252775. C A . PASS AR2=0.93;DR2=0.95;AF=0.236 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.544:0.037,0.382,0.581 1|1:1.695:0.029,0.246,0.724 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.009,0.091,0.9 0|1:1.627:0.034,0.306,0.661 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.479:0.081,0.36,0.559 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.695:0.025,0.255,0.72 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.959:0.256,0.529,0.215 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.497:0.58,0.343,0.077 1|1:2:0,0,1 0|0:0.923:0.291,0.494,0.214 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.94:0.232,0.595,0.173 1|1:0.887:0.306,0.501,0.193 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.522:0.557,0.363,0.079 1|0:0.864:0.326,0.484,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.658:0.028,0.286,0.686 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.582:0.044,0.33,0.626 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.008,0.097,0.895 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.366:0.672,0.289,0.038 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.289:0.254,0.202,0.543 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.727:0.02,0.234,0.746 0|0:0:1,0,0 1|1:1.133:0.269,0.33,0.402 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.69:0.027,0.257,0.716 1|1:2:0,0,1 1|1:1.272:0.176,0.375,0.448 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.262:0.166,0.407,0.427 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15254265 SNP-3.15252911. C A . PASS AR2=0.922;DR2=0.938;AF=0.316 GT:DS:GP 0|0:0.036:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.705:0.427,0.442,0.131 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.643:0.445,0.467,0.088 0|0:1.123:0.186,0.504,0.31 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.852:0.331,0.486,0.183 1|1:1.319:0.116,0.449,0.435 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.764:0.365,0.506,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.607:0.512,0.368,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.584:0.499,0.418,0.083 0|0:0.162:0.848,0.142,0.01 1|1:2:0,0,1 1|1:1.947:0.003,0.047,0.95 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.76,0.216,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.903,0.095,0.001 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.078:0.238,0.446,0.316 0|0:0:1,0,0 1|0:1.05:0.241,0.467,0.292 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.547:0.526,0.402,0.072 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.853:0.299,0.549,0.152 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.845:0.333,0.489,0.178 1|1:2:0,0,1 0|1:0.594:0.481,0.443,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.793,0.171,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.123:0.19,0.497,0.313 0|0:0:1,0,0 1|1:1.304:0.127,0.442,0.431 0|0:0.422:0.636,0.305,0.058 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.672:0.024,0.279,0.696 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.062:0.272,0.394,0.334 0|0:0.337:0.705,0.252,0.043 1|1:2:0,0,1 1|1:1.732:0.045,0.178,0.777 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.12:0.193,0.493,0.313 0|0:0.414:0.66,0.265,0.075 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.47:0.074,0.382,0.544 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:1.624:0.031,0.313,0.656 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.597:0.612,0.179,0.209 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.11:0.203,0.483,0.313 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15290587 SNP-3.15289233. A G . PASS AR2=0.975;DR2=0.98;AF=0.415 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.783,0.203,0.014 1|1:2:0,0,1 0|0:0.214:0.798,0.189,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.97,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.36:0.672,0.296,0.032 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 0|0:0.113:0.89,0.106,0.004 0|0:0.195:0.814,0.177,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.512:0.572,0.344,0.084 0|0:0.273:0.742,0.242,0.016 0|0:0.206:0.801,0.192,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.88,0.113,0.007 0|0:0.196:0.812,0.181,0.008 0|0:0.177:0.829,0.165,0.006 0|0:0.05:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.826,0.154,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.53:0.551,0.367,0.082 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.838:0.22,0.723,0.057 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.114:0.889,0.108,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.232:0.781,0.207,0.012 0|0:0.191:0.82,0.169,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.127:0.88,0.113,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.287:0.721,0.27,0.009 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0,0.046,0.954 1|1:2:0,0,1 0|0:0.119:0.884,0.113,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 +3 15290918 SNP-3.15289564. C A . PASS AR2=0.979;DR2=0.983;AF=0.29 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.013,0.177,0.81 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.003,0.068,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.678:0.429,0.465,0.107 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.703:0.019,0.26,0.721 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.644:0.015,0.327,0.659 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.907:0.003,0.087,0.91 1|1:1.662:0.026,0.285,0.688 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0.001,0.04,0.959 1|1:1.785:0.011,0.193,0.796 1|1:1.702:0.02,0.259,0.722 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.623:0.037,0.303,0.66 1|1:1.758:0.013,0.215,0.772 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.002,0.094,0.904 1|1:1.827:0.006,0.16,0.834 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.003,0.062,0.935 0|0:0:1,0,0 1|1:1.831:0.01,0.15,0.84 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:1.918:0.001,0.08,0.919 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.01,0.15,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.003,0.062,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.952,0.047,0.002 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.003,0.066,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15291376 SNP-3.15290022. A G . PASS AR2=0.993;DR2=0.995;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0.001,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.999:0,0.001,0.999 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.82,0.177,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.627,0.356,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.782,0.214,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.957,0.042,0 0|0:0.114:0.887,0.112,0.001 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.319:0.003,0.675,0.322 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15292524 SNP-3.15291170. A G . PASS AR2=0.966;DR2=0.979;AF=0.452 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.468:0.586,0.36,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.432:0.615,0.337,0.048 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.304:0.209,0.278,0.513 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.036:0.194,0.575,0.23 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.489:0.556,0.399,0.045 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.165:0.228,0.38,0.392 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.244:0.774,0.208,0.018 0|0:0:1,0,0 0|1:0.469:0.587,0.357,0.056 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.351:0.682,0.285,0.033 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.529:0.541,0.388,0.07 0|0:0.398:0.624,0.355,0.021 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.294:0.725,0.255,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.002,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 +3 15292560 SNP-3.15291206. A G . PASS AR2=0.994;DR2=0.994;AF=0.355 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.01,0.186,0.804 1|1:2:0,0,1 1|1:1.918:0.003,0.076,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.002,0.11,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.002,0.091,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.782:0.02,0.178,0.802 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.002,0.092,0.905 1|1:1.801:0.008,0.183,0.809 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.001,0.071,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.006,0.141,0.854 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.004,0.125,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15292626 SNP-3.15291272. A G . PASS AR2=1;DR2=1;AF=0.387 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15293334 SNP-3.15291980. A G . PASS AR2=0.989;DR2=0.991;AF=0.432 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.228:0.795,0.181,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.296:0.023,0.659,0.319 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.139:0.026,0.809,0.165 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.073:0.029,0.87,0.102 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.733,0.247,0.02 0|0:0:1,0,0 0|0:0.347:0.684,0.285,0.031 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.22:0.793,0.194,0.013 1|1:2:0,0,1 0|0:0.216:0.798,0.187,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 +3 15293985 SNP-3.15292631. A G . PASS AR2=0.993;DR2=0.994;AF=0.359 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.907:0.002,0.09,0.909 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.003,0.103,0.893 1|1:2:0,0,1 1|1:1.865:0.002,0.131,0.867 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.001,0.073,0.926 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.13:0.873,0.124,0.003 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0.028:0.972,0.028,0 0|0:0.098:0.904,0.095,0.002 0|0:0.043:0.958,0.042,0.001 0|0:0.046:0.955,0.045,0 0|0:0.041:0.96,0.039,0.001 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15294598 SNP-3.15293244. A G . PASS AR2=0.998;DR2=0.998;AF=0.374 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.001,0.127,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.62:0,0.379,0.621 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15294874 SNP-3.15293520. A G . PASS AR2=0.994;DR2=0.994;AF=0.365 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.929:0.001,0.069,0.93 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|1:1.761:0.009,0.221,0.77 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.979:0.075,0.871,0.054 1|1:2:0,0,1 1|1:1.846:0.007,0.141,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.002,0.109,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.961:0.04,0.96,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.945:0,0.054,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.001,0.064,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.003,0.106,0.891 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.902:0,0.097,0.902 1|1:1.958:0.001,0.041,0.959 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0,0.05,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15301525 SNP-3.15300171. C A . PASS AR2=0.933;DR2=0.95;AF=0.3 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.512:0.063,0.362,0.575 1|1:2:0,0,1 1|1:1.504:0.077,0.342,0.581 0|1:1.067:0.184,0.566,0.25 1|1:1.501:0.07,0.36,0.571 0|1:1.331:0.091,0.487,0.422 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.862:0.011,0.116,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0.104:0.897,0.103,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.218:0.786,0.211,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.902,0.098,0 0|0:0.057:0.944,0.056,0.001 0|0:0.11:0.893,0.104,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.131:0.25,0.369,0.381 0|0:0:1,0,0 0|0:0.239:0.776,0.209,0.015 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.894,0.103,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.519:0.051,0.379,0.57 0|0:0.359:0.678,0.285,0.037 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.822:0,0.178,0.822 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.664:0.023,0.289,0.687 1|1:1.791:0,0.208,0.792 1|1:1.766:0.008,0.219,0.773 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.654:0.021,0.305,0.675 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.591:0.424,0.561,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.001,0.113,0.886 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.779:0,0.221,0.779 1|1:1.34:0.121,0.418,0.461 0|0:0:1,0,0 1|1:1.664:0.034,0.268,0.698 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.747:0.035,0.183,0.782 1|1:1.919:0.004,0.074,0.922 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:1.73:0.004,0.261,0.734 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.523:0.026,0.425,0.549 0|0:0:1,0,0 0|1:1.212:0.07,0.649,0.282 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.847,0.149,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.62:0.426,0.528,0.046 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.005,0.318,0.676 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.008,0.144,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.904,0.096,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.006,0.215,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.342:0.105,0.447,0.447 0|0:0.128:0.876,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.893,0.105,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.063,0.178,0.759 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.904:0.003,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15304027 SNP-3.15302673. A G . PASS AR2=0.983;DR2=0.986;AF=0.432 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.059:0.942,0.058,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.859,0.135,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.233:0.775,0.217,0.008 0|0:0:1,0,0 0|0:0.084:0.917,0.082,0.001 0|0:0:1,0,0 0|0:0.045:0.956,0.042,0.001 0|0:0.161:0.842,0.156,0.003 0|0:0.138:0.866,0.13,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.117:0.888,0.107,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.108:0,0.892,0.108 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.058:0.001,0.939,0.059 0|1:1.137:0,0.863,0.137 0|1:1.012:0.009,0.97,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.851,0.146,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.985:0.067,0.88,0.052 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.998:0.019,0.964,0.017 0|0:0.348:0.672,0.309,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.848:0.153,0.845,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.821,0.174,0.006 0|0:0.062:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.752,0.222,0.026 1|1:2:0,0,1 0|0:0.26:0.743,0.254,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.191:0.813,0.184,0.004 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.09:0.912,0.086,0.002 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0.21:0.802,0.186,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 +3 15309510 SNP-3.15308156. A G . PASS AR2=0.989;DR2=0.99;AF=0.436 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 0|0:0:1,0,0 0|0:0.3:0.73,0.241,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.749,0.233,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.754,0.228,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.895,0.101,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.979:0.049,0.923,0.028 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.056:0.944,0.055,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.806,0.185,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.111:0.894,0.1,0.005 0|1:1:0,1,0 0|0:0.211:0.8,0.189,0.011 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.884,0.115,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.818,0.098,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.946,0.053,0.001 1|1:2:0,0,1 +3 15309552 SNP-3.15308198. A G . PASS AR2=0.995;DR2=0.997;AF=0.377 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.958:0.001,0.041,0.958 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.783:0.004,0.209,0.787 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.553:0.06,0.328,0.613 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.758,0.234,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15315887 SNP-3.15314533. C A . PASS AR2=1;DR2=1;AF=0.198 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15316277 SNP-3.15314923. C A . PASS AR2=0.965;DR2=0.977;AF=0.273 GT:DS:GP 0|0:0:1,0,0 1|0:1.629:0.045,0.281,0.674 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.303:0.136,0.425,0.439 0|0:0.433:0.621,0.325,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.932,0.063,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.868,0.12,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.269:0.191,0.349,0.46 0|0:0.23:0.773,0.224,0.003 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:1.947:0.003,0.048,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.904:0,0.096,0.904 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.979:0,0.02,0.979 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:1.498:0.072,0.358,0.57 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.873,0.121,0.006 0|0:0:1,0,0 0|0:0.324:0.698,0.28,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.012,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.79,0.185,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0.074:0.931,0.064,0.005 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.714,0.278,0.007 1|1:2:0,0,1 0|0:0.154:0.858,0.13,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.665:0.447,0.441,0.112 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 +3 15316494 SNP-3.15315140. A G . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.93:0.07,0.93,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15318459 SNP-3.15317105. A G . PASS AR2=0.956;DR2=0.966;AF=0.269 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.559:0.049,0.344,0.607 1|1:1.627:0.035,0.302,0.662 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.81:0.009,0.171,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.021,0.261,0.718 1|1:1.638:0.036,0.291,0.674 1|1:1.559:0.048,0.345,0.607 1|1:1.579:0.045,0.332,0.624 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.641:0.032,0.294,0.674 1|1:1.867:0.014,0.106,0.881 1|1:1.849:0.006,0.139,0.855 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.442:0.097,0.363,0.539 1|1:1.774:0.014,0.198,0.788 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.9,0.094,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.887,0.107,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.841:0.187,0.784,0.029 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.842:0.005,0.148,0.847 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.011,0.304,0.684 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.651:0.03,0.289,0.681 1|1:1.806:0.016,0.162,0.822 0|0:0:1,0,0 1|1:1.671:0.028,0.274,0.698 1|1:1.637:0.032,0.299,0.669 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.787:0.008,0.198,0.795 1|1:1.649:0.035,0.28,0.685 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.549:0.051,0.348,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.103:0.903,0.091,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.527:0.055,0.362,0.582 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15319991 SNP-3.15318637. A G . PASS AR2=0.999;DR2=0.999;AF=0.34 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.002,0.139,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15320714 SNP-3.15319360. A G . PASS AR2=0.98;DR2=0.983;AF=0.342 GT:DS:GP 0|0:0.076:0.924,0.076,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.002,0.095,0.903 1|1:1.711:0.02,0.249,0.731 0|0:0:1,0,0 1|1:1.868:0.004,0.123,0.872 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.756:0.016,0.212,0.772 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.002,0.093,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.007,0.152,0.841 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.86:0.005,0.129,0.865 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.062:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.067:0.936,0.062,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.894,0.104,0.002 0|0:0.17:0.837,0.157,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.079:0.099,0.724,0.178 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.084:0.918,0.079,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0.002,0.073,0.925 0|1:1:0,1,0 1|1:1.914:0.002,0.082,0.916 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.003,0.092,0.906 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.931:0.003,0.064,0.933 1|1:1.738:0.018,0.226,0.756 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.8,0.199,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.081:0.92,0.078,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.495:0.507,0.491,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.807:0.009,0.174,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15321314 SNP-3.15319960. A G . PASS AR2=0.984;DR2=0.989;AF=0.383 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.778,0.201,0.022 1|1:0.912:0.365,0.359,0.277 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.266:0.758,0.218,0.024 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.001:0,0.999,0.001 0|0:0.085:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.903,0.096,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.778:0.223,0.776,0.001 0|1:0.775:0.225,0.775,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.912,0.088,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.112:0.891,0.105,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.938,0.061,0.001 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.118:0.886,0.111,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.872,0.126,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 15321781 SNP-3.15320427. A G . PASS AR2=1;DR2=1;AF=0.307 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15323105 SNP-3.15321751. C A . PASS AR2=0.994;DR2=0.995;AF=0.288 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|1:1:0,1,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.39:0.638,0.333,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.681,0.309,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15323126 SNP-3.15321772. C A . PASS AR2=0.898;DR2=0.919;AF=0.51 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.002,0.068,0.93 1|1:2:0,0,1 1|1:1.948:0.002,0.049,0.949 1|1:1.882:0.004,0.11,0.886 1|1:1.924:0.002,0.071,0.926 1|1:1.885:0.003,0.11,0.887 1|1:1.881:0.006,0.108,0.886 1|0:1.135:0.187,0.492,0.322 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.193:0.158,0.491,0.351 0|1:1.141:0.186,0.486,0.328 1|0:1.143:0.184,0.489,0.327 1|1:2:0,0,1 1|0:1.311:0.091,0.507,0.402 0|1:1.172:0.173,0.482,0.345 1|1:2:0,0,1 1|0:1.288:0.129,0.454,0.417 1|1:1.401:0.077,0.444,0.479 1|1:1.316:0.098,0.487,0.414 1|1:2:0,0,1 1|0:1.131:0.189,0.491,0.32 0|1:1.201:0.154,0.492,0.355 1|1:1.551:0.031,0.386,0.582 1|1:1.497:0.07,0.364,0.567 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.41:0.058,0.473,0.468 1|1:1.074:0.212,0.501,0.286 0|1:1.143:0.191,0.475,0.334 1|1:1.975:0,0.024,0.975 1|1:1.727:0.027,0.22,0.753 1|1:1.39:0.092,0.426,0.482 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.246:0.136,0.482,0.382 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.347:0.089,0.474,0.437 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.788,0.209,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.236:0.151,0.462,0.387 0|0:0:1,0,0 1|1:1.968:0.001,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.019:0.002,0.977,0.021 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|1:1.018:0,0.982,0.018 0|1:1.021:0,0.979,0.021 1|0:1.016:0.002,0.981,0.018 1|0:1.02:0.001,0.978,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.179:0.167,0.486,0.347 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.034:0.231,0.504,0.265 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.002,0.053,0.946 1|1:1.747:0,0.253,0.747 0|0:0:1,0,0 1|1:1.87:0,0.129,0.87 0|1:1.539:0.007,0.447,0.546 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:1.918:0.003,0.076,0.921 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.356:0.082,0.479,0.439 1|0:1.247:0.137,0.479,0.384 0|0:0:1,0,0 1|1:1.42:0.074,0.433,0.494 1|1:1.709:0.016,0.259,0.725 1|1:1.173:0.169,0.49,0.342 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.467:0.062,0.408,0.529 0|0:0:1,0,0 1|1:1.566:0.08,0.274,0.646 0|1:1.132:0.188,0.492,0.32 0|0:0:1,0,0 0|1:1.222:0.145,0.488,0.367 1|1:1.614:0.028,0.33,0.642 1|1:1.736:0.031,0.203,0.766 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.327:0.134,0.406,0.46 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.458:0.059,0.424,0.517 1|1:2:0,0,1 0|1:1.128:0.176,0.521,0.304 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.696:0.021,0.261,0.718 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.42:0.068,0.444,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.57:0.062,0.307,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.153:0.18,0.488,0.333 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15323380 SNP-3.15322026. A G . PASS AR2=0.971;DR2=0.981;AF=0.284 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.405:0.089,0.416,0.494 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.368:0.103,0.427,0.471 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.711:0.023,0.243,0.734 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.279:0.124,0.473,0.403 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.181:0.153,0.512,0.335 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.498:0.072,0.359,0.569 1|1:1.527:0.049,0.375,0.576 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.969:0,0.03,0.969 1|1:1.714:0.01,0.266,0.724 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.359:0.104,0.432,0.464 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15326858 SNP-3.15325504. A G . PASS AR2=0.999;DR2=0.999;AF=0.373 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 +3 15326925 SNP-3.15325571. C A . PASS AR2=0.948;DR2=0.963;AF=0.526 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.427:0.086,0.401,0.513 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.837:0.012,0.139,0.849 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.691:0.024,0.261,0.715 1|1:2:0,0,1 1|1:1.692:0.024,0.261,0.716 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.682:0.026,0.267,0.707 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.852:0.006,0.135,0.858 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.002,0.069,0.93 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.947:0.207,0.639,0.154 1|0:1:0,1,0 1|0:0.917:0.23,0.622,0.148 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.536:0.055,0.354,0.591 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.579:0.048,0.325,0.627 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.308:0.118,0.456,0.426 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.535:0.058,0.348,0.594 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.621:0.041,0.298,0.662 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.686:0.023,0.269,0.708 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.001,0.081,0.918 1|1:2:0,0,1 1|1:1.675:0.026,0.273,0.701 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.017,0.231,0.752 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.458:0.076,0.39,0.534 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.694:0.023,0.259,0.717 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.689:0.024,0.262,0.714 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.501:0.03,0.44,0.531 0|1:1:0,1,0 1|0:1.432:0.082,0.404,0.514 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0,0.063,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.417:0.086,0.41,0.504 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.655:0.563,0.22,0.218 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15327621 SNP-3.15326267. C A . PASS AR2=0.987;DR2=0.99;AF=0.329 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.407:0.629,0.336,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.867,0.13,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.513:0.553,0.381,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.335:0.69,0.286,0.025 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.069:0.932,0.068,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.715,0.266,0.019 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.157:0.849,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.139,0.006 0|0:0:1,0,0 0|0:0.151:0.853,0.143,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15327657 SNP-3.15326303. A G . PASS AR2=0.985;DR2=0.99;AF=0.282 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.426:0.084,0.406,0.51 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.565:0.036,0.364,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.525:0.043,0.389,0.568 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.913:0.092,0.903,0.005 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.262:0.738,0.262,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.018,0.235,0.747 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.761:0.013,0.212,0.775 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15327752 SNP-3.15326398. C A . PASS AR2=0.995;DR2=0.996;AF=0.263 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.021,0.215,0.765 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.712:0,0.287,0.712 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0,0.197,0.803 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.827:0.011,0.151,0.838 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15328210 SNP-3.15326856. A G . PASS AR2=0.999;DR2=0.999;AF=0.382 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.251:0.749,0.251,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15329206 SNP-3.15327852. A G . PASS AR2=0.99;DR2=0.992;AF=0.367 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.794:0.004,0.197,0.799 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.975:0.025,0.975,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.708:0.02,0.252,0.728 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0,0.048,0.951 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.131:0.87,0.128,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.902:0.002,0.095,0.904 1|1:1.73:0.02,0.23,0.75 1|1:1.722:0.02,0.239,0.742 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.814:0.004,0.179,0.818 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.916:0.002,0.08,0.918 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 1|1:1.912:0.002,0.084,0.914 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.834:0.006,0.153,0.84 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15329912 SNP-3.15328558. A G . PASS AR2=0.987;DR2=0.989;AF=0.374 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.06,0.939 1|1:2:0,0,1 1|1:1.772:0.013,0.202,0.785 1|1:2:0,0,1 1|1:1.771:0.012,0.206,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0,0.077,0.923 1|1:1.845:0.008,0.14,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 0|0:0.05:0.951,0.049,0.001 1|1:1.792:0.011,0.187,0.802 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.125:0.877,0.12,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.005,0.159,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.002,0.065,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.809:0.009,0.172,0.819 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0,0.039,0.96 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.852:0.002,0.143,0.854 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.06,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.932:0.001,0.065,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.002,0.128,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.873:0.003,0.121,0.876 1|1:1.813:0.006,0.176,0.819 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.938:0.001,0.059,0.94 +3 15331834 SNP-3.15330480. A G . PASS AR2=0.997;DR2=0.997;AF=0.39 GT:DS:GP 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.087,0.003 0|0:0.059:0.942,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.043:0.957,0.043,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.1:0.903,0.095,0.003 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15332489 SNP-3.15331135. C A . PASS AR2=0.996;DR2=0.997;AF=0.289 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.286:0.719,0.276,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.469:0.542,0.448,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15333239 SNP-3.15331885. A G . PASS AR2=0.965;DR2=0.973;AF=0.41 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.103,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.857,0.137,0.006 0|0:0.376:0.644,0.336,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 0|0:0.051:0.949,0.05,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.107:0.895,0.102,0.002 1|1:2:0,0,1 0|1:0.703:0.368,0.561,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 0|0:0.01:0.99,0.01,0 0|0:0.105:0.897,0.101,0.002 1|1:2:0,0,1 0|0:0.12:0.884,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.429:0.597,0.377,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.944:0.285,0.487,0.229 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0.159:0.843,0.156,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.001,0.088,0.911 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.134:0.867,0.132,0.001 1|1:1.876:0.003,0.117,0.88 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.503:0.544,0.41,0.046 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.924,0.076,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.065:0.936,0.063,0.001 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.711,0.275,0.014 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.879,0.117,0.004 0|0:0.146:0.859,0.135,0.005 1|1:1.845:0.004,0.147,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 0|0:0.112:0.891,0.107,0.003 0|0:0.324:0.691,0.293,0.016 0|0:0.233:0.777,0.214,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.663:0.464,0.409,0.127 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.239:0.765,0.23,0.005 0|0:0:1,0,0 1|0:1.278:0.047,0.627,0.325 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.67:0.353,0.624,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.961,0.038,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|0:0.588:0.504,0.404,0.092 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:1.874:0.001,0.123,0.875 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15333774 SNP-3.15332420. A G . PASS AR2=0.99;DR2=0.992;AF=0.331 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.008,0.172,0.82 1|1:1.877:0.006,0.112,0.882 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.432:0.574,0.42,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.304:0.722,0.251,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0.128:0.873,0.125,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.005,0.135,0.86 1|1:1.835:0.007,0.151,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.884:0.003,0.11,0.887 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.003,0.09,0.907 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.906:0.002,0.09,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15333798 SNP-3.15332444. C A . PASS AR2=0.936;DR2=0.956;AF=0.552 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|0:1.289:0.108,0.495,0.397 1|1:1.582:0.048,0.321,0.63 0|1:1.468:0.071,0.39,0.539 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.343:0.11,0.438,0.453 1|1:2:0,0,1 1|0:1.539:0.041,0.379,0.58 0|0:0:1,0,0 1|1:1.814:0.011,0.164,0.825 1|1:1.578:0.034,0.354,0.612 1|1:2:0,0,1 1|1:1.589:0.037,0.336,0.626 0|1:1.265:0.123,0.489,0.388 1|1:1.425:0.085,0.406,0.51 1|1:1.411:0.087,0.414,0.498 1|1:1.63:0.018,0.334,0.648 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:1.672:0.018,0.292,0.69 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.004,0.103,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.48:0.067,0.386,0.547 0|0:0:1,0,0 1|1:1.954:0.002,0.043,0.955 0|0:0:1,0,0 1|1:1.676:0.023,0.279,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.04,0.96 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.171:0.182,0.464,0.354 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.354:0.061,0.523,0.416 1|1:1.624:0,0.376,0.624 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.719:0.005,0.27,0.724 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.793:0.017,0.172,0.81 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.501:0.061,0.378,0.562 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.453:0.074,0.398,0.528 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.43:0.084,0.403,0.513 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.77:0.009,0.212,0.779 1|1:2:0,0,1 0|0:0.069:0.931,0.068,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.588:0.035,0.342,0.623 1|1:1.479:0.068,0.386,0.547 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.575:0.038,0.349,0.613 1|1:1.332:0.111,0.447,0.442 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.037:0.964,0.036,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.609:0.026,0.339,0.635 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.665:0.043,0.249,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15333950 SNP-3.15332596. A G . PASS AR2=0.988;DR2=0.99;AF=0.439 GT:DS:GP 0|0:0.337:0.688,0.287,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.854,0.141,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.839,0.156,0.005 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.765,0.219,0.017 0|0:0.147:0.856,0.14,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.187:0.822,0.17,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.139:0.862,0.136,0.001 0|1:1:0,1,0 0|0:0.09:0.912,0.087,0.002 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.113:0.891,0.105,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.177:0.83,0.162,0.007 0|0:0.179:0.826,0.17,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.073:0.929,0.07,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.916,0.082,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.248:0.756,0.241,0.003 0|0:0.121:0.882,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15335806 SNP-3.15334452. A G . PASS AR2=0.993;DR2=0.994;AF=0.402 GT:DS:GP 0|0:0.013:0.987,0.013,0 1|1:1.939:0.002,0.058,0.941 1|1:1.922:0.002,0.075,0.923 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.001,0.095,0.904 1|1:2:0,0,1 1|1:1.918:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0,0.036,0.964 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.004,0.126,0.869 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.661:0.004,0.331,0.665 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.035,0.964 1|1:1.953:0.001,0.046,0.953 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:1.939:0.001,0.059,0.94 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.057,0.943 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.945:0.001,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15335891 SNP-3.15334537. C A . PASS AR2=0.966;DR2=0.975;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.21:0.8,0.19,0.01 0|0:0:1,0,0 1|0:0.514:0.554,0.377,0.068 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.782,0.202,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.237:0.778,0.207,0.015 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.429:0.616,0.338,0.045 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.512:0.553,0.381,0.065 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.067:0.934,0.065,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.07:0.932,0.067,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.759,0.224,0.017 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.904:0.003,0.09,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.387:0.646,0.322,0.033 0|0:0.379:0.652,0.316,0.031 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.358:0.672,0.298,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.223:0.79,0.197,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.339:0.687,0.287,0.026 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.773,0.211,0.016 0|0:0:1,0,0 0|0:0.246:0.77,0.214,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.171:0.84,0.15,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15336159 SNP-3.15334805. A G . PASS AR2=0.995;DR2=0.996;AF=0.409 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.09:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.002,0.067,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0,0.069,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.921:0.001,0.078,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.081:0.92,0.079,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.102:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.003 1|1:2:0,0,1 1|1:1.93:0,0.07,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.117,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 +3 15336618 SNP-3.15335264. A G . PASS AR2=1;DR2=1;AF=0.409 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15336996 SNP-3.15335642. A G . PASS AR2=0.982;DR2=0.987;AF=0.342 GT:DS:GP 1|0:1.581:0.036,0.347,0.617 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.724:0.017,0.241,0.741 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.888:0.002,0.108,0.89 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.002,0.097,0.9 1|1:2:0,0,1 0|1:1.439:0.02,0.522,0.459 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.341:0.034,0.591,0.375 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.887,0.113,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.048,0.951 1|1:1.738:0.013,0.236,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.327:0.046,0.581,0.373 1|1:1.928:0.002,0.068,0.93 1|1:1.898:0.002,0.097,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.814:0.006,0.174,0.82 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.312:0.043,0.602,0.355 1|1:2:0,0,1 1|1:1.922:0.001,0.076,0.923 0|0:0:1,0,0 1|1:2:0,0,1 +3 15337287 SNP-3.15335933. A G . PASS AR2=0.989;DR2=0.991;AF=0.395 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 1|1:2:0,0,1 0|0:0.091:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.132,0.005 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0.067:0.933,0.066,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0.001 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.146:0.859,0.135,0.006 0|0:0.035:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.162:0.843,0.151,0.005 1|1:1.998:0,0.002,0.998 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.536:0.464,0.536,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.206:0.794,0.206,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.508:0.492,0.508,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0.296:0.704,0.296,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15340437 SNP-3.15339083. A G . PASS AR2=0.958;DR2=0.971;AF=0.283 GT:DS:GP 0|0:0.087:0.914,0.084,0.002 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 1|1:1.544:0.053,0.35,0.597 1|1:1.649:0.033,0.286,0.681 1|1:1.442:0.075,0.408,0.517 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.553:0.041,0.366,0.594 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.382:0.104,0.41,0.486 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.147:0.172,0.508,0.32 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.239:0.143,0.475,0.382 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.514:0.056,0.375,0.569 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.741:0.026,0.208,0.767 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.338:0.111,0.44,0.449 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.406:0.083,0.428,0.489 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.964:0,0.035,0.965 1|1:1.655:0.01,0.325,0.665 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.605:0.037,0.32,0.642 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15341253 SNP-3.15339899. A G . PASS AR2=0.949;DR2=0.964;AF=0.283 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.012,0.207,0.78 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.372:0.087,0.455,0.459 1|1:1.641:0.032,0.296,0.673 1|1:2:0,0,1 1|1:1.592:0.042,0.325,0.634 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.419:0.063,0.454,0.482 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.653:0.023,0.3,0.677 0|1:1.454:0.043,0.46,0.497 1|1:2:0,0,1 1|0:1.152:0.128,0.592,0.28 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.869:0.004,0.124,0.872 1|0:1.52:0.046,0.387,0.566 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.009,0.165,0.826 1|1:2:0,0,1 1|1:1.396:0.077,0.45,0.473 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.054:0.946,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.5:0.063,0.374,0.563 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 1|0:1:0,1,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.299:0.071,0.559,0.37 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.016,0.218,0.766 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.403:0.073,0.451,0.476 0|0:0:1,0,0 1|1:1.782:0.005,0.208,0.787 1|1:1.869:0.007,0.116,0.877 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.479:0.052,0.416,0.532 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.793:0.008,0.191,0.801 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.006,0.116,0.878 1|1:1.561:0.028,0.382,0.589 1|1:2:0,0,1 1|1:1.873:0.006,0.114,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.007,0.132,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.714:0.017,0.252,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15341900 SNP-3.15340546. A G . PASS AR2=1;DR2=1;AF=0.375 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.926:0.074,0.926,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15343206 SNP-3.15341852. A G . PASS AR2=0.995;DR2=0.996;AF=0.364 GT:DS:GP 1|1:1.548:0.039,0.375,0.587 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.829:0.003,0.166,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.763:0.01,0.218,0.773 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15346607 SNP-3.15345253. C A . PASS AR2=0.967;DR2=0.974;AF=0.252 GT:DS:GP 0|0:0:1,0,0 1|1:1.881:0.005,0.109,0.886 1|1:2:0,0,1 1|1:1.91:0.002,0.085,0.913 1|1:1.903:0.003,0.09,0.906 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.323:0.016,0.646,0.339 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.874,0.124,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.508:0.599,0.294,0.107 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.004,0.1,0.897 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:1.895:0.003,0.098,0.899 1|1:2:0,0,1 1|1:1.455:0.096,0.352,0.551 1|1:1.772:0.008,0.213,0.78 0|0:0.262:0.741,0.256,0.003 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 1|1:1.972:0.001,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.003,0.065,0.932 0|0:0.035:0.965,0.035,0 1|1:1.796:0.01,0.185,0.805 1|1:1.875:0.003,0.119,0.878 1|1:1.453:0.066,0.415,0.519 0|0:0:1,0,0 1|1:1.971:0.001,0.028,0.971 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 1|1:1.864:0.007,0.122,0.871 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.821:0.007,0.164,0.829 1|1:2:0,0,1 0|0:0.062:0.939,0.061,0.001 1|1:1.681:0.038,0.242,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.016,0.255,0.729 0|0:0:1,0,0 1|1:1.915:0.003,0.079,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.001 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15347942 SNP-3.15346588. A G . PASS AR2=0.994;DR2=0.995;AF=0.332 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.001,0.082,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0.001,0.062,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.398:0.602,0.398,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.842,0.153,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.003,0.089,0.908 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.932 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.001,0.09,0.908 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15348159 SNP-3.15346805. A G . PASS AR2=1;DR2=1;AF=0.377 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15349886 SNP-3.15348532. C A . PASS AR2=0.999;DR2=0.999;AF=0.284 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15351072 SNP-3.15349718. C A . PASS AR2=0.99;DR2=0.991;AF=0.28 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.747:0.017,0.22,0.764 0|0:0:1,0,0 1|1:1.928:0.002,0.067,0.93 1|1:1.802:0.009,0.179,0.811 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.004,0.117,0.879 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.005,0.126,0.868 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.883:0.003,0.111,0.886 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.773:0.004,0.219,0.777 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.928:0.001,0.069,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:1.888:0.004,0.105,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0,0.04,0.96 0|0:0.202:0.798,0.201,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15352213 SNP-3.15350859. A G . PASS AR2=0.996;DR2=0.997;AF=0.373 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0,0.05,0.95 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.001,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.974,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15353046 SNP-3.15351692. C A . PASS AR2=0.996;DR2=0.996;AF=0.311 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.169:0.837,0.157,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.053:0.947,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.83,0.165,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.114:0.889,0.109,0.003 0|0:0.121:0.883,0.113,0.004 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.915,0.078,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15355248 SNP-3.15353894. A G . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15355846 SNP-3.15354492. A G . PASS AR2=0.987;DR2=0.988;AF=0.33 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.895:0.003,0.1,0.897 1|1:2:0,0,1 1|1:1.87:0.005,0.12,0.875 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.891:0.003,0.103,0.894 1|1:1.899:0.002,0.097,0.901 1|1:2:0,0,1 1|1:1.902:0.002,0.094,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.001,0.083,0.917 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.921:0.002,0.076,0.923 1|1:1.915:0.002,0.081,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.958 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.003,0.099,0.898 1|1:1.915:0.001,0.082,0.917 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.004,0.135,0.861 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.993:0.007,0.993,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.791:0.003,0.203,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.916:0.001,0.081,0.917 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:1.877:0.003,0.116,0.881 1|1:2:0,0,1 1|1:1.883:0.003,0.112,0.885 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.921:0.002,0.075,0.923 1|1:1.907:0.002,0.089,0.909 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.003,0.113,0.883 1|1:1.798:0.009,0.184,0.807 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.896:0.003,0.099,0.898 1|1:1.917:0.001,0.081,0.918 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15357818 SNP-3.15356464. C A . PASS AR2=0.985;DR2=0.987;AF=0.291 GT:DS:GP 0|0:0:1,0,0 1|1:1.857:0.004,0.135,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.893,0.106,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.347:0.7,0.253,0.047 0|1:1.148:0.002,0.849,0.149 0|0:0.257:0.783,0.177,0.04 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.112:0.891,0.106,0.003 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.101:0.904,0.092,0.005 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.768:0.008,0.216,0.776 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.142:0.232,0.394,0.374 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.957,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.035:0.965,0.035,0 0|0:0.036:0.966,0.033,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0.144:0.86,0.136,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15358532 SNP-3.15357178. A G . PASS AR2=0.968;DR2=0.974;AF=0.303 GT:DS:GP 0|0:0.006:0.994,0.006,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.778:0,0.221,0.778 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.679:0.022,0.278,0.7 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.717:0.021,0.24,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.011,0.216,0.774 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.188:0.167,0.479,0.355 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.849:0,0.151,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.642:0.006,0.346,0.648 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|0:1.556:0.008,0.428,0.564 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.717:0.021,0.24,0.738 1|1:2:0,0,1 1|1:1.703:0.02,0.258,0.723 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.788:0.016,0.181,0.803 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.005,0.153,0.842 1|1:1.657:0.027,0.289,0.684 1|1:1.692:0.039,0.231,0.73 1|0:1:0,1,0 1|1:1.852:0.008,0.132,0.86 0|1:1.255:0.144,0.456,0.399 1|1:2:0,0,1 1|1:1.913:0.003,0.081,0.916 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.015:0.985,0.015,0 1|1:1.556:0.022,0.4,0.578 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.687:0.025,0.264,0.712 0|0:0.021:0.979,0.021,0 0|0:0.016:0.984,0.016,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.881:0.003,0.114,0.883 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0,0.039,0.96 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15361028 SNP-3.15359674. A G . PASS AR2=0.975;DR2=0.977;AF=0.237 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.83:0.004,0.163,0.833 1|1:1.933:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.969:0.274,0.483,0.243 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.074:0.22,0.486,0.294 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.626,0.348,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.033:0.243,0.481,0.276 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.04:0.234,0.492,0.274 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.079:0.214,0.492,0.293 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.033:0.243,0.481,0.276 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15361971 SNP-3.15360617. C A . PASS AR2=0.994;DR2=0.995;AF=0.235 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.063:0.938,0.062,0.001 1|0:1:0,1,0 0|0:0.123:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.878,0.118,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.319:0.694,0.293,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.885,0.113,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15363498 SNP-3.15362144. C A . PASS AR2=0.981;DR2=0.985;AF=0.274 GT:DS:GP 0|0:0:1,0,0 1|0:1.485:0.067,0.381,0.552 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.125:0.879,0.117,0.004 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0.116:0.887,0.11,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.065,0.002 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.049:0.212,0.527,0.261 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.771:0.012,0.205,0.783 1|1:1.767:0.015,0.203,0.782 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.649:0.031,0.288,0.681 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.877:0.006,0.111,0.883 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.155:0.852,0.142,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.87,0.125,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.835,0.156,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15366115 SNP-3.15364761. C A . PASS AR2=0.996;DR2=0.997;AF=0.207 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.307:0.696,0.302,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.111:0.893,0.104,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15366187 SNP-3.15364833. A G . PASS AR2=0.997;DR2=0.998;AF=0.39 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.715,0.279,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.896,0.101,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.002 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15367078 SNP-3.15365724. C A . PASS AR2=0.911;DR2=0.93;AF=0.511 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0,0.137,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.788:0.368,0.477,0.156 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.512:0.013,0.461,0.525 0|1:1.171:0.158,0.514,0.328 1|1:2:0,0,1 1|0:1.015:0.243,0.5,0.257 0|1:0.788:0.368,0.477,0.156 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.032:0.232,0.503,0.265 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.835:0.339,0.488,0.174 0|1:1.006:0.248,0.497,0.255 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.394:0.092,0.422,0.486 0|1:0.793:0.365,0.478,0.158 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.074:0.221,0.484,0.295 0|0:0.702:0.421,0.456,0.123 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.265:0.028,0.68,0.293 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.842:0.007,0.145,0.849 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.886:0.119,0.877,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.019:0,0.981,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.79:0.005,0.201,0.795 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.494:0.062,0.383,0.556 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.143:0.182,0.493,0.325 1|0:0.792:0.365,0.477,0.157 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.388:0.093,0.427,0.481 1|1:2:0,0,1 1|0:1.067:0.213,0.507,0.28 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.691:0.425,0.459,0.116 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.926:0.288,0.498,0.214 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.79:0.366,0.477,0.157 1|1:2:0,0,1 1|1:1.675:0.024,0.276,0.7 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.037:0.227,0.509,0.264 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.825:0.344,0.487,0.169 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.357:0.105,0.433,0.462 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.357:0.105,0.433,0.462 1|0:1.371:0.099,0.431,0.47 1|0:1:0,1,0 0|1:1.384:0.094,0.428,0.478 1|1:1.389:0.093,0.426,0.481 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.534:0.063,0.341,0.596 0|1:1:0,1,0 1|1:1.372:0.099,0.43,0.471 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.522:0.063,0.352,0.585 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.777:0.374,0.474,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15368555 SNP-3.15367201. C A . PASS AR2=0.998;DR2=0.998;AF=0.38 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.884:0.004,0.109,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.007,0.151,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.001,0.095,0.904 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.002,0.048,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15369388 SNP-3.15368034. A G . PASS AR2=1;DR2=1;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15369587 SNP-3.15368233. C A . PASS AR2=0.919;DR2=0.937;AF=0.368 GT:DS:GP 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.053:0.947,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.276:0.126,0.472,0.402 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.576:0.468,0.488,0.044 0|1:0.773:0.358,0.511,0.131 0|0:0:1,0,0 0|0:0.738:0.397,0.468,0.135 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.803:0.348,0.501,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.675:0.464,0.397,0.139 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.276:0.207,0.31,0.483 0|0:0:1,0,0 0|0:0.921:0.359,0.361,0.28 0|0:0:1,0,0 1|0:1.088:0.191,0.531,0.279 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.573:0.041,0.344,0.615 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.259:0.784,0.174,0.042 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.746:0.255,0.744,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.495:0.056,0.394,0.551 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.485:0.058,0.4,0.542 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.619:0.032,0.317,0.651 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.622:0.033,0.312,0.655 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.603:0.051,0.296,0.654 0|1:0.9:0.278,0.545,0.178 1|1:1.124:0.174,0.528,0.298 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.821,0.153,0.026 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.912:0.25,0.589,0.161 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.481:0.072,0.376,0.552 0|0:0:1,0,0 0|1:1.022:0.207,0.564,0.229 0|0:0.381:0.642,0.336,0.023 1|1:1.812:0.003,0.182,0.815 0|0:0:1,0,0 0|0:0.464:0.596,0.344,0.06 0|0:0:1,0,0 0|1:1.218:0.138,0.506,0.356 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.201:0.148,0.503,0.349 0|1:0.84:0.272,0.616,0.112 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.916:0.248,0.587,0.164 1|0:0.839:0.318,0.525,0.157 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.167:0.067,0.699,0.234 1|1:2:0,0,1 1|1:1.728:0.025,0.223,0.753 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.42:0.083,0.414,0.503 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.773:0.031,0.165,0.804 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.57:0.006,0.419,0.575 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.447:0.083,0.387,0.53 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15369786 SNP-3.15368432. A G . PASS AR2=0.98;DR2=0.985;AF=0.303 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.582:0.044,0.329,0.627 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.823:0.011,0.155,0.834 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.002,0.113,0.885 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.82,0.17,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.619:0.036,0.309,0.655 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.008,0.147,0.845 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.624:0.035,0.307,0.658 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.705:0.024,0.246,0.73 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.004,0.113,0.883 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.014,0.17,0.817 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.015,0.192,0.792 1|1:2:0,0,1 1|1:1.816:0.011,0.162,0.827 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.013,0.168,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.605:0.039,0.317,0.644 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15370592 SNP-3.15369238. A G . PASS AR2=0.807;DR2=0.858;AF=0.205 GT:DS:GP 1|0:0.627:0.472,0.429,0.099 0|0:0:1,0,0 0|0:0.326:0.697,0.279,0.024 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.374:0.65,0.325,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.447:0.603,0.346,0.051 0|0:0:1,0,0 0|0:0.105:0.896,0.102,0.001 0|0:0:1,0,0 0|0:0.498:0.566,0.371,0.063 1|0:0.524:0.546,0.385,0.07 0|0:0.191:0.817,0.174,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.246:0.782,0.189,0.029 0|0:0.241:0.771,0.218,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.586:0.504,0.405,0.09 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.109:0.202,0.486,0.312 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.446:0.593,0.367,0.039 0|0:0.219:0.791,0.2,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.597:0.489,0.425,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.42:0.625,0.331,0.045 0|0:0:1,0,0 1|0:0.453:0.581,0.385,0.034 0|0:0:1,0,0 0|0:0.081:0.919,0.081,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.713:0.404,0.478,0.118 0|0:0.115:0.889,0.107,0.004 1|0:0.47:0.576,0.379,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.898,0.097,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.295:0.73,0.245,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.808:0.331,0.531,0.138 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.8,0.185,0.015 0|1:0.571:0.501,0.427,0.072 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.549:0.527,0.398,0.075 0|0:0.146:0.862,0.13,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.852,0.144,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.42:0.628,0.323,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.87:0.278,0.574,0.148 0|0:0:1,0,0 0|0:0.124:0.884,0.108,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.766,0.224,0.01 0|0:0:1,0,0 0|0:0.41:0.632,0.325,0.043 0|0:0.458:0.571,0.4,0.029 0|1:0.516:0.551,0.382,0.067 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.626:0.037,0.3,0.663 0|0:0.524:0.541,0.395,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.753,0.239,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.663:0.448,0.442,0.11 0|0:0:1,0,0 0|0:0.469:0.585,0.361,0.054 0|0:0.411:0.628,0.332,0.04 0|0:0.493:0.567,0.373,0.06 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.448:0.591,0.369,0.039 0|1:0.77:0.388,0.454,0.158 0|0:0.304:0.718,0.261,0.021 1|0:0.735:0.403,0.458,0.139 1|1:2:0,0,1 0|0:0.468:0.581,0.37,0.049 0|0:0.108:0.896,0.099,0.005 0|0:0:1,0,0 0|0:0.161:0.844,0.152,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.544:0.529,0.399,0.072 0|0:0.311:0.719,0.251,0.03 0|0:0.406:0.631,0.331,0.037 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.804,0.188,0.008 0|0:0.513:0.55,0.387,0.063 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.509:0.557,0.378,0.066 0|0:0.227:0.782,0.209,0.009 0|0:0.545:0.526,0.404,0.071 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.372:0.651,0.325,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.376:0.643,0.339,0.018 0|0:0:1,0,0 0|0:0.355:0.678,0.288,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.349:0.688,0.275,0.037 0|0:0.235:0.783,0.199,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.089:0.912,0.086,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.799,0.178,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.276:0.738,0.247,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.787,0.2,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.561:0.507,0.425,0.068 1|0:0.902:0.329,0.439,0.231 0|0:0:1,0,0 +3 15370686 SNP-3.15369332. A G . PASS AR2=1;DR2=1;AF=0.368 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15370768 SNP-3.15369414. A G . PASS AR2=0.991;DR2=0.992;AF=0.347 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.005,0.117,0.878 1|1:1.856:0.003,0.137,0.86 1|1:2:0,0,1 1|1:1.884:0.004,0.107,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:1.971:0.001,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.123:0.882,0.113,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.8:0.029,0.143,0.829 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.087,0.911 1|1:1.858:0.005,0.132,0.863 1|1:1.966:0.001,0.033,0.967 1|1:2:0,0,1 1|1:1.975:0.001,0.024,0.976 1|1:1.89:0.003,0.105,0.892 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.884:0.004,0.108,0.888 1|1:1.766:0.002,0.23,0.768 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15371351 SNP-3.15369997. A G . PASS AR2=0.982;DR2=0.984;AF=0.326 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.816:0.012,0.159,0.829 1|1:2:0,0,1 1|1:1.865:0,0.135,0.865 1|1:1.811:0.009,0.17,0.821 1|1:1.845:0.007,0.142,0.851 0|0:0:1,0,0 1|1:1.856:0.006,0.132,0.862 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.854:0.006,0.135,0.859 1|1:1.9:0.004,0.092,0.904 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.006,0.127,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.011,0.138,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.007,0.115,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.785:0.012,0.192,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.616:0.039,0.306,0.655 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.661:0.02,0.3,0.681 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.004,0.11,0.886 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:1.839:0.006,0.148,0.846 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.839:0.006,0.148,0.846 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.877:0.004,0.115,0.881 1|1:1.855:0.006,0.134,0.86 1|0:1:0,1,0 1|1:1.853:0.006,0.136,0.858 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.013,0.199,0.788 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15372006 SNP-3.15370652. C A . PASS AR2=0.995;DR2=0.995;AF=0.212 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.957,0.041,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.846,0.146,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.883,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.849,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15373779 SNP-3.15372425. A G . PASS AR2=1;DR2=1;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15377035 SNP-3.15375681. A G . PASS AR2=0.993;DR2=0.994;AF=0.466 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0.068:0.934,0.065,0.001 1|0:1:0,1,0 0|0:0.073:0.928,0.07,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.081:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.497:0.029,0.444,0.526 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0,0.04,0.96 1|1:1.992:0,0.008,0.992 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.955:0,0.045,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.808:0,0.192,0.808 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.983:0.055,0.908,0.037 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.929 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15378020 SNP-3.15376666. C A . PASS AR2=0.989;DR2=0.991;AF=0.199 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.857,0.136,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.837,0.155,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.137:0.869,0.125,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.831,0.159,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.923:0.001,0.074,0.924 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.739,0.251,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.142,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.181:0.828,0.162,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15379589 SNP-3.15378235. C A . PASS AR2=0.975;DR2=0.981;AF=0.229 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.338:0.691,0.28,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.31:0.716,0.259,0.026 0|0:0:1,0,0 0|0:0.322:0.704,0.27,0.026 0|0:0:1,0,0 0|0:0.34:0.689,0.283,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.802,0.188,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.098,0.003 1|0:0.33:0.697,0.276,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.108,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.052,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.317:0.708,0.266,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.352:0.68,0.287,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.791,0.192,0.017 0|0:0.341:0.689,0.282,0.03 0|0:0:1,0,0 0|0:0.232:0.782,0.204,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15379816 SNP-3.15378462. C A . PASS AR2=1;DR2=1;AF=0.282 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15379991 SNP-3.15378637. A G . PASS AR2=0.987;DR2=0.989;AF=0.239 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.895,0.101,0.005 0|0:0.085:0.918,0.079,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.789,0.199,0.012 0|0:0.245:0.769,0.218,0.013 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.23:0.784,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.863,0.133,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.268:0.748,0.237,0.016 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0.25:0.768,0.214,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.832,0.158,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15382697 SNP-3.15381343. C A . PASS AR2=0.897;DR2=0.925;AF=0.288 GT:DS:GP 0|0:0:1,0,0 1|1:1.345:0.127,0.4,0.473 0|0:0.484:0.552,0.412,0.036 0|0:0.762:0.407,0.425,0.169 0|1:0.775:0.396,0.432,0.172 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.487:0.04,0.433,0.527 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.132:0.221,0.425,0.353 0|1:1.141:0.194,0.472,0.335 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.359:0.015,0.611,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.097:0.191,0.522,0.287 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.013,0.12,0.868 1|1:1.706:0.028,0.239,0.733 0|1:1.371:0.08,0.469,0.451 1|1:2:0,0,1 1|1:1.387:0.097,0.419,0.484 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.491:0.593,0.323,0.084 1|0:1.295:0.123,0.459,0.418 0|1:1.3:0.126,0.448,0.426 0|0:0:1,0,0 1|1:1.939:0.001,0.06,0.939 1|1:2:0,0,1 1|1:1.754:0.003,0.24,0.757 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.562:0.034,0.37,0.596 1|1:1.338:0.11,0.442,0.448 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|0:1.255:0.136,0.473,0.391 0|0:0.605:0.479,0.436,0.084 1|1:1.369:0.09,0.451,0.459 1|0:0.969:0.217,0.596,0.186 0|1:1.307:0.121,0.452,0.428 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.777:0.335,0.552,0.112 0|0:0:1,0,0 1|0:1.09:0.162,0.585,0.253 1|1:1.545:0.061,0.334,0.605 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.714:0,0.285,0.715 0|0:0:1,0,0 0|1:1.366:0.108,0.418,0.474 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.765:0.017,0.201,0.782 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.346:0.115,0.425,0.46 0|0:0.092:0.91,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.04,0.342,0.618 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.332:0.708,0.251,0.041 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.492:0.067,0.374,0.559 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.744:0.294,0.668,0.038 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.416:0.09,0.404,0.506 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.435:0.072,0.421,0.507 0|0:0:1,0,0 +3 15384795 SNP-3.15383441. C A . PASS AR2=0.997;DR2=0.997;AF=0.403 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.009,0.149,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.744,0.228,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.964,0.035,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.852:0.154,0.839,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15386720 SNP-3.15385366. C A . PASS AR2=0.999;DR2=0.999;AF=0.399 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.003,0.054,0.943 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.002,0.057,0.941 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15387032 SNP-3.15385678. C A . PASS AR2=0.997;DR2=0.997;AF=0.412 GT:DS:GP 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.161:0.846,0.148,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.147,0.006 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.951 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15388007 SNP-3.15386653. C A . PASS AR2=0.986;DR2=0.989;AF=0.424 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.218:0.794,0.193,0.012 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.258:0.759,0.225,0.017 1|0:1:0,1,0 0|0:0.252:0.764,0.22,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.761,0.222,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.795,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.247:0.768,0.217,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.784,0.203,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.251:0.764,0.22,0.016 0|0:0:1,0,0 0|0:0.229:0.784,0.203,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.422:0.616,0.347,0.038 0|0:0:1,0,0 0|0:0.194:0.815,0.175,0.009 0|0:0:1,0,0 0|0:0.183:0.825,0.167,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15388697 SNP-3.15387343. A G . PASS AR2=1;DR2=1;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.025,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15389271 SNP-3.15387917. A G . PASS AR2=0.982;DR2=0.984;AF=0.243 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.176:0.832,0.16,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.859,0.136,0.006 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.846,0.148,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.139,0.006 0|0:0.168:0.839,0.154,0.007 0|0:0.157:0.849,0.145,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.173:0.834,0.158,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.162:0.844,0.149,0.007 0|0:0.176:0.832,0.16,0.008 0|1:1:0,1,0 0|0:0.161:0.846,0.148,0.007 0|0:0.152:0.854,0.141,0.006 0|0:0.18:0.828,0.164,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15389524 SNP-3.15388170. A G . PASS AR2=0.991;DR2=0.992;AF=0.285 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.877,0.123,0 0|0:0.239:0.776,0.21,0.014 1|1:2:0,0,1 0|0:0.057:0.944,0.054,0.001 0|0:0:1,0,0 0|0:0.242:0.773,0.213,0.015 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.848,0.148,0.004 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.763,0.221,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.223:0.79,0.197,0.013 0|0:0.187:0.824,0.166,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.805,0.185,0.01 1|1:2:0,0,1 +3 15389626 SNP-3.15388272. A G . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.936:0.064,0.936,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15390114 SNP-3.15388760. C A . PASS AR2=0.999;DR2=0.999;AF=0.388 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.162:0.842,0.154,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.079:0.922,0.076,0.001 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15393029 SNP-3.15391675. A G . PASS AR2=1;DR2=1;AF=0.276 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15395475 SNP-3.15394121. A G . PASS AR2=1;DR2=1;AF=0.208 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15399098 SNP-3.15397744. A G . PASS AR2=0.874;DR2=0.916;AF=0.307 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.752:0.41,0.429,0.162 0|0:0.497:0.561,0.382,0.057 1|1:2:0,0,1 0|1:0.66:0.451,0.439,0.11 0|1:1:0,1,0 0|0:0.662:0.45,0.437,0.113 0|0:0.171:0.834,0.162,0.005 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.572:0.511,0.406,0.083 0|0:0:1,0,0 0|0:0.581:0.504,0.411,0.085 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.723:0.392,0.492,0.115 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.592:0.485,0.438,0.077 1|0:1.563:0,0.437,0.563 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.698:0.408,0.485,0.107 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.619:0.479,0.424,0.097 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.625:0.467,0.442,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.586:0.501,0.413,0.087 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.265:0.743,0.25,0.007 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.227:0.776,0.221,0.003 0|0:0:1,0,0 1|1:1.586:0,0.414,0.586 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.098:0,0.902,0.098 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.644:0.464,0.428,0.108 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.528:0.536,0.399,0.064 1|0:1:0,1,0 1|0:0.763:0.366,0.504,0.129 0|0:0.253:0.764,0.218,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.165:0.842,0.15,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.727:0.33,0.614,0.057 1|1:2:0,0,1 0|0:0.126:0.878,0.118,0.004 0|0:0.466:0.582,0.37,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.641:0.464,0.432,0.104 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.634:0.463,0.44,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.444:0.611,0.333,0.055 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.174:0.826,0.174,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.584:0.503,0.41,0.087 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.314:0.705,0.276,0.019 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.746,0.235,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.441:0.614,0.331,0.055 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.788:0.37,0.471,0.158 1|0:1:0,1,0 0|0:0.339:0.692,0.277,0.031 1|0:1:0,1,0 0|0:0:1,0,0 +3 15401934 SNP-3.15400580. A G . PASS AR2=1;DR2=1;AF=0.274 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15402454 SNP-3.15401100. C A . PASS AR2=1;DR2=1;AF=0.375 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15402840 SNP-3.15401486. A G . PASS AR2=1;DR2=1;AF=0.414 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15407650 SNP-3.15406296. A G . PASS AR2=0.999;DR2=0.999;AF=0.234 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15407820 SNP-3.15406466. A G . PASS AR2=0.999;DR2=0.999;AF=0.269 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.909:0.091,0.909,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.161:0.839,0.161,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15410098 SNP-3.15408744. A G . PASS AR2=0.944;DR2=0.957;AF=0.333 GT:DS:GP 1|1:2:0,0,1 1|0:0.948:0.221,0.611,0.168 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.925:0.25,0.575,0.175 0|0:0.474:0.577,0.373,0.051 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.428:0.619,0.335,0.046 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.407:0.647,0.3,0.053 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.999:0.001,0.999,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.503:0.571,0.354,0.075 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.42:0.628,0.323,0.049 0|0:0:1,0,0 0|0:0.392:0.654,0.299,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.537:0.538,0.388,0.075 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.161:0.839,0.161,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.425:0.621,0.334,0.045 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.807:0.335,0.523,0.142 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.962:0.257,0.523,0.22 1|1:2:0,0,1 0|1:0.922:0.235,0.609,0.157 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.982:0.217,0.583,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.939:0.259,0.542,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.988:0.213,0.587,0.2 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.431:0.617,0.336,0.048 1|0:0.431:0.617,0.335,0.048 1|1:2:0,0,1 0|0:0.431:0.617,0.335,0.048 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.299:0.73,0.241,0.029 0|0:0.415:0.628,0.328,0.043 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.408:0.63,0.331,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.487:0.554,0.404,0.042 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15417237 SNP-3.15415883. A G . PASS AR2=0.99;DR2=0.992;AF=0.242 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.808,0.183,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.151:0.852,0.145,0.003 1|0:1.047:0,0.953,0.047 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.471:0.57,0.389,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.187:0.817,0.178,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.179:0.827,0.168,0.006 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15420573 SNP-3.15419219. A G . PASS AR2=0.987;DR2=0.99;AF=0.25 GT:DS:GP 1|1:1.804:0.013,0.171,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.456:0.052,0.44,0.508 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.005,0.136,0.859 1|1:1.671:0.014,0.301,0.685 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0.008,0.181,0.811 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.007,0.169,0.824 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.833:0.006,0.154,0.839 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.861:0.004,0.131,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.012,0.187,0.801 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.006,0.129,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15423622 SNP-3.15422268. A G . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15426783 SNP-3.15425429. A G . PASS AR2=1;DR2=1;AF=0.42 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.098:0.909,0.084,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15428351 SNP-3.15426997. C A . PASS AR2=0.978;DR2=0.979;AF=0.411 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.785:0.36,0.496,0.145 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.993:0,0.007,0.993 1|1:1.717:0,0.283,0.717 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.744:0.388,0.48,0.132 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.925:0.293,0.489,0.218 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|1:0.919:0.296,0.488,0.215 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.781:0.362,0.494,0.143 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.912:0.297,0.493,0.209 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.809:0.359,0.472,0.169 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.909:0.299,0.493,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.95:0.278,0.494,0.228 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15429024 SNP-3.15427670. C A . PASS AR2=0.995;DR2=0.997;AF=0.485 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.793:0.019,0.17,0.811 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.906:0.094,0.905,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.38:0.087,0.446,0.467 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15431066 SNP-3.15429712. A G . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15432664 SNP-3.15431310. C A . PASS AR2=1;DR2=1;AF=0.364 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15433832 SNP-3.15432478. A G . PASS AR2=1;DR2=1;AF=0.206 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15434604 SNP-3.15433250. C A . PASS AR2=0.997;DR2=0.997;AF=0.377 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.584:0.43,0.556,0.014 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.94,0.06,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.861,0.132,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15437886 SNP-3.15436532. A G . PASS AR2=0.995;DR2=0.995;AF=0.262 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.991:0.04,0.929,0.031 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.04:0.022,0.916,0.062 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.933:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.948 1|1:1.943:0.001,0.055,0.944 1|1:1.844:0.002,0.153,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.007,0.072,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.002,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15442866 SNP-3.15441512. C A . PASS AR2=0.991;DR2=0.993;AF=0.339 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.796:0.01,0.184,0.806 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.008,0.16,0.832 0|0:0.314:0.687,0.313,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.082,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.404:0.598,0.4,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.316:0.711,0.262,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.911,0.085,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15443878 SNP-3.15442524. A G . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15445331 SNP-3.15443977. A G . PASS AR2=0.968;DR2=0.974;AF=0.284 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.757:0.013,0.216,0.77 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.059:0.107,0.727,0.166 1|1:1.74:0.017,0.227,0.756 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.734:0.018,0.23,0.752 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.74:0.017,0.226,0.757 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.733:0.018,0.231,0.751 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.816:0.011,0.163,0.827 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.77:0.013,0.203,0.784 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.005,0.165,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.718:0.02,0.242,0.738 1|1:1.711:0.021,0.246,0.733 0|0:0:1,0,0 1|1:1.731:0.018,0.232,0.749 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.018,0.233,0.749 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.501:0.149,0.202,0.649 0|0:0:1,0,0 1|1:1.714:0.021,0.244,0.735 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.729:0.019,0.234,0.748 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.019,0.233,0.748 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.015,0.222,0.763 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.72:0.019,0.241,0.739 0|0:0:1,0,0 1|1:1.73:0.019,0.233,0.748 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 15446453 SNP-3.15445099. C A . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15447518 SNP-3.15446164. A G . PASS AR2=0.994;DR2=0.996;AF=0.273 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.465:0.552,0.431,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.893:0.003,0.101,0.896 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.876:0.004,0.115,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.016,0.175,0.809 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.943,0.056,0.002 0|0:0:1,0,0 1|1:2:0,0,1 +3 15449713 SNP-3.15448359. A G . PASS AR2=0.982;DR2=0.985;AF=0.427 GT:DS:GP 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.112:0.891,0.105,0.004 0|0:0.108:0.896,0.101,0.003 0|0:0.312:0.708,0.272,0.02 0|0:0.282:0.736,0.245,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.842,0.151,0.007 0|0:0.335:0.687,0.291,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.83,0.163,0.007 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.089:0.914,0.084,0.003 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.008,0.991 1|1:1.989:0,0.01,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.038:0.004,0.954,0.042 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0.12:0.884,0.112,0.004 0|0:0.102:0.902,0.095,0.003 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.04:0,0.96,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.001,0.156,0.844 0|0:0:1,0,0 1|1:1.927:0,0.073,0.927 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.118,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.211:0.8,0.19,0.011 0|0:0:1,0,0 0|0:0.125:0.879,0.116,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.16,0.008 0|0:0.164:0.842,0.152,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.863,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.138:0.865,0.132,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.146:0.86,0.134,0.006 1|0:1:0,1,0 0|0:0.131:0.874,0.122,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.89,0.109,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 15451422 SNP-3.15450068. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15451733 SNP-3.15450379. C A . PASS AR2=0.989;DR2=0.991;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.911,0.087,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.011,0.166,0.823 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.718:0.019,0.244,0.737 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.707:0.312,0.67,0.018 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.836,0.159,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.862:0.005,0.129,0.866 0|1:1:0,1,0 1|1:1.836:0.007,0.151,0.843 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.82:0.006,0.167,0.827 0|0:0:1,0,0 0|1:1.18:0.064,0.692,0.244 1|1:1.797:0.013,0.177,0.81 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15452883 SNP-3.15451529. A G . PASS AR2=0.985;DR2=0.986;AF=0.37 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.964:0.269,0.499,0.233 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.986:0,0.013,0.986 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.168:0.839,0.155,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.847,0.147,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.057:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.012:0.244,0.499,0.257 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.014:0.244,0.499,0.258 0|0:1.014:0.244,0.499,0.258 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.965:0.268,0.5,0.233 1|1:2:0,0,1 +3 15453230 SNP-3.15451876. A G . PASS AR2=0.987;DR2=0.989;AF=0.295 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.824,0.167,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.827:0.007,0.158,0.835 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.024,0.22,0.756 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.004,0.118,0.878 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.548:0.047,0.357,0.595 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.226:0.783,0.207,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.004,0.118,0.878 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.862:0.005,0.129,0.867 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.133:0.873,0.122,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0.003,0.074,0.923 1|1:2:0,0,1 1|1:1.907:0.001,0.092,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.004,0.11,0.886 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.875:0.004,0.117,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15454100 SNP-3.15452746. C A . PASS AR2=1;DR2=1;AF=0.311 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15454253 SNP-3.15452899. C A . PASS AR2=0.988;DR2=0.991;AF=0.312 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.004,0.132,0.864 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.862,0.133,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.486:0.566,0.382,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.571:0.031,0.367,0.602 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0,0.067,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.775:0.002,0.222,0.777 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.097:0.905,0.093,0.002 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.003,0.072,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15455450 SNP-3.15454096. A G . PASS AR2=0.983;DR2=0.986;AF=0.275 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.861:0.005,0.129,0.866 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.006,0.143,0.851 1|1:1.793:0.007,0.193,0.8 0|0:0.041:0.96,0.04,0 0|0:0:1,0,0 1|1:1.642:0.024,0.31,0.666 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.034:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.448:0.051,0.45,0.499 0|1:0.935:0.078,0.909,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.81,0.181,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.91,0.09,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.878,0.122,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.215:0.786,0.213,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.001,0.14,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.939:0.001,0.059,0.94 1|1:1.84:0.005,0.149,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0.001,0.066,0.934 1|1:2:0,0,1 1|1:1.874:0.001,0.124,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.918,0.082,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.742:0.017,0.224,0.759 0|0:0:1,0,0 0|0:0:1,0,0 +3 15456672 SNP-3.15455318. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15457547 SNP-3.15456193. A G . PASS AR2=0.982;DR2=0.985;AF=0.282 GT:DS:GP 1|1:1.849:0.007,0.137,0.856 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.818:0.01,0.161,0.829 0|0:0:1,0,0 1|0:0.42:0.582,0.416,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.816:0.01,0.163,0.827 1|1:2:0,0,1 1|1:1.906:0.001,0.093,0.906 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.726:0.011,0.251,0.737 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.004,0.12,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0,0.051,0.949 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.888:0.004,0.104,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0,0.056,0.944 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.651:0.018,0.313,0.669 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.56:0.024,0.392,0.584 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.001,0.066,0.933 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.005,0.123,0.873 0|0:0:1,0,0 1|1:1.907:0.001,0.092,0.907 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.907:0.001,0.091,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.781:0.011,0.198,0.792 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.05,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.004,0.108,0.887 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15457947 SNP-3.15456593. C A . PASS AR2=0.996;DR2=0.997;AF=0.334 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.81,0.181,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.799,0.189,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.809,0.18,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15458910 SNP-3.15457556. C A . PASS AR2=0.999;DR2=0.999;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.906,0.092,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.002,0.039,0.959 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15459967 SNP-3.15458613. A G . PASS AR2=0.995;DR2=0.996;AF=0.282 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.393:0.015,0.577,0.408 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.748,0.246,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.813,0.186,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15462917 SNP-3.15461563. A G . PASS AR2=0.993;DR2=0.995;AF=0.37 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.759:0.015,0.211,0.774 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.743:0.017,0.223,0.76 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.335:0.067,0.531,0.402 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.003,0.114,0.882 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.795:0.01,0.184,0.805 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0,0.142,0.858 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15463539 SNP-3.15462185. A G . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15463651 SNP-3.15462297. A G . PASS AR2=1;DR2=1;AF=0.405 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15473418 SNP-3.15472064. C A . PASS AR2=1;DR2=1;AF=0.442 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15476947 SNP-3.15475593. C A . PASS AR2=0.98;DR2=0.984;AF=0.354 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0,0.129,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.167:0.18,0.474,0.347 0|1:1:0,1,0 1|1:1.227:0.124,0.526,0.35 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.005,0.28,0.715 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.524:0.485,0.505,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.164:0.171,0.494,0.335 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.401:0.117,0.366,0.518 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.869:0.233,0.666,0.102 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.203:0.096,0.605,0.299 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.04,0.96 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15482936 SNP-3.15481582. A G . PASS AR2=0.977;DR2=0.982;AF=0.433 GT:DS:GP 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.262:0.756,0.227,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.091:0.912,0.086,0.002 1|1:2:0,0,1 0|0:0.336:0.689,0.286,0.025 1|1:1.923:0.002,0.074,0.924 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.328:0.7,0.271,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.884,0.114,0.001 0|0:0.425:0.621,0.333,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.789,0.195,0.017 0|0:0:1,0,0 0|0:0.178:0.837,0.148,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.004,0.117,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.334:0.699,0.269,0.033 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.191:0.815,0.179,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.831,0.163,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.55:0.481,0.489,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.01,0.137,0.853 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.357:0.671,0.301,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.002,0.062,0.936 0|0:0.146:0.863,0.129,0.009 0|0:0.043:0.957,0.043,0 0|0:0.403:0.638,0.32,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.945:0,0.054,0.946 1|1:2:0,0,1 1|1:1.799:0.005,0.19,0.804 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.905,0.094,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15482992 SNP-3.15481638. C A . PASS AR2=0.996;DR2=0.997;AF=0.338 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.37:0.075,0.48,0.445 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.907,0.091,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15483577 SNP-3.15482223. A G . PASS AR2=0.992;DR2=0.993;AF=0.267 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.136:0.869,0.126,0.005 0|0:0.043:0.957,0.043,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.76,0.218,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.187:0.824,0.166,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.762,0.229,0.009 0|0:0.166:0.834,0.166,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.878,0.121,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 1|1:2:0,0,1 0|0:0.046:0.954,0.046,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15485632 SNP-3.15484278. A G . PASS AR2=0.991;DR2=0.992;AF=0.403 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.286:0.737,0.241,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.193:0.818,0.171,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.005,0.114,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.915:0.001,0.083,0.916 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.786:0.008,0.198,0.794 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.003,0.069,0.928 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.073,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.786:0.01,0.194,0.796 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.792:0.012,0.184,0.804 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.003,0.074,0.923 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.005,0.086,0.909 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.003,0.093,0.904 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.888:0.004,0.103,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15486523 SNP-3.15485169. A G . PASS AR2=0.998;DR2=0.998;AF=0.388 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.003,0.104,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0,0.06,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.925:0.075,0.924,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.814:0.186,0.814,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.001,0.067,0.932 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15486613 SNP-3.15485259. C A . PASS AR2=0.999;DR2=0.999;AF=0.326 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.003,0.108,0.889 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.931:0,0.069,0.931 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15487081 SNP-3.15485727. A G . PASS AR2=0.863;DR2=0.893;AF=0.247 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.013:0.251,0.486,0.263 0|1:1.091:0.213,0.484,0.304 1|0:0.534:0.505,0.456,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.047:0.231,0.491,0.278 0|1:0.94:0.293,0.474,0.233 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.915,0.074,0.012 0|1:0.756:0.339,0.565,0.095 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.053:0.231,0.484,0.285 0|0:0:1,0,0 0|0:0.69:0.419,0.471,0.11 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.652:0.433,0.481,0.085 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.35:0.683,0.285,0.033 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.488:0.567,0.378,0.055 0|0:0.628:0.449,0.474,0.077 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.86:0.333,0.474,0.193 0|0:0.326:0.702,0.27,0.028 0|0:0:1,0,0 0|0:0.363:0.668,0.301,0.031 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.626:0.465,0.443,0.091 0|0:0.276:0.744,0.236,0.02 1|1:2:0,0,1 0|0:0.296:0.725,0.253,0.022 0|0:0:1,0,0 0|0:0.344:0.688,0.28,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.531:0.564,0.341,0.095 0|1:0.851:0.319,0.511,0.17 0|0:0:1,0,0 0|0:0.714:0.402,0.481,0.116 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.953:0.119,0.809,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.798,0.194,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.372:0.662,0.305,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.841,0.159,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.326:0.7,0.274,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.903,0.097,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.801:0.336,0.528,0.136 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.781:0.346,0.526,0.127 1|0:0.514:0.491,0.503,0.006 0|0:0.531:0.554,0.361,0.085 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.524:0.48,0.515,0.004 1|1:1.44:0.152,0.255,0.592 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.913:0.292,0.503,0.205 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.307:0.717,0.259,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.659,0.307,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.715:0.376,0.533,0.091 1|0:0.95:0.281,0.489,0.231 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.708:0.411,0.471,0.119 0|0:0.739:0.513,0.235,0.252 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.853,0.147,0 0|0:0:1,0,0 0|0:0.336:0.692,0.28,0.028 0|0:0.207:0.808,0.176,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.039:0.241,0.48,0.279 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.721,0.258,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.467:0.605,0.323,0.072 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.317:0.708,0.267,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.768:0.376,0.479,0.145 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.263:0.028,0.682,0.29 0|0:0:1,0,0 +3 15487224 SNP-3.15485870. A G . PASS AR2=0.997;DR2=0.998;AF=0.268 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.612:0.388,0.612,0 0|0:0:1,0,0 0|0:0.097:0.903,0.097,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15487245 SNP-3.15485891. A G . PASS AR2=0.937;DR2=0.951;AF=0.203 GT:DS:GP 0|0:0.273:0.74,0.247,0.013 0|0:0.004:0.996,0.004,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0.003:0.997,0.003,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:1.59:0.051,0.308,0.641 1|1:1.63:0.021,0.327,0.651 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.628:0.047,0.278,0.675 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.652:0.031,0.286,0.683 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.163:0.846,0.145,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 1|1:1.115:0.233,0.419,0.348 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.867:0.332,0.469,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.886,0.107,0.006 0|0:0:1,0,0 0|0:0.092:0.911,0.087,0.003 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.23:0.774,0.221,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|1:0.528:0.478,0.517,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.461:0.55,0.439,0.011 0|0:0.088:0.913,0.086,0.001 0|1:1:0,1,0 0|0:0.352:0.664,0.321,0.016 0|0:0.401:0.617,0.365,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.854,0.142,0.004 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.795,0.199,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0.247:0.759,0.235,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.342:0.671,0.315,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.615:0.044,0.296,0.66 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.177:0.834,0.155,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.724:0.021,0.234,0.745 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.001 0|0:0.139:0.867,0.127,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.24:0.102,0.555,0.342 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.746:0.013,0.228,0.759 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.93,0.068,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 +3 15487265 SNP-3.15485911. C A . PASS AR2=0.982;DR2=0.986;AF=0.383 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.223:0.789,0.199,0.012 0|0:0.148:0.858,0.136,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.901,0.097,0.002 0|0:0.177:0.831,0.161,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.828,0.164,0.008 1|1:2:0,0,1 0|0:0.141:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.406:0.638,0.317,0.044 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.19:0.82,0.171,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 0|0:0.021:0.979,0.02,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.819,0.17,0.011 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.909,0.089,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.661,0.322,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0.138:0.866,0.129,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.289:0.729,0.253,0.018 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.893,0.103,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.249:0.762,0.228,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.367:0.669,0.296,0.036 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15491015 SNP-3.15489661. C A . PASS AR2=0.952;DR2=0.965;AF=0.406 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.271:0.749,0.23,0.02 0|0:0.531:0.526,0.416,0.057 0|0:0.332:0.696,0.275,0.029 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.307:0.718,0.257,0.025 0|0:0.493:0.559,0.388,0.053 0|0:0:1,0,0 0|0:0.504:0.55,0.396,0.054 0|0:0.51:0.546,0.398,0.056 1|1:2:0,0,1 0|0:0.461:0.585,0.369,0.046 1|0:1:0,1,0 0|0:0.208:0.802,0.188,0.01 1|1:2:0,0,1 0|0:0.217:0.798,0.187,0.015 0|0:0:1,0,0 0|0:0.209:0.802,0.186,0.012 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.339:0.674,0.312,0.013 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.521:0.545,0.389,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.938,0.06,0.003 0|0:0:1,0,0 0|0:0.256:0.761,0.222,0.017 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.804,0.188,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.293:0.73,0.248,0.023 0|0:0.423:0.615,0.346,0.039 0|0:0:1,0,0 0|0:0.72:0.37,0.539,0.09 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.238:0.772,0.218,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.254:0.762,0.221,0.016 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.202:0.81,0.178,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.286:0.735,0.243,0.021 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.331:0.694,0.28,0.026 0|0:0.299:0.722,0.257,0.021 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.251:0.765,0.219,0.016 0|0:0.175:0.834,0.157,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.378:0.651,0.319,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.185:0.824,0.167,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15493570 SNP-3.15492216. C A . PASS AR2=1;DR2=1;AF=0.35 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15493738 SNP-3.15492384. C A . PASS AR2=1;DR2=1;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15494636 SNP-3.15493282. C A . PASS AR2=0.997;DR2=0.998;AF=0.199 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.53:0.488,0.494,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15497892 SNP-3.15496538. C A . PASS AR2=0.948;DR2=0.961;AF=0.262 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.914,0.081,0.005 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.536:0.547,0.37,0.083 1|0:1:0,1,0 1|0:0.566:0.505,0.425,0.071 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.468:0.586,0.36,0.054 0|0:0.126:0.877,0.12,0.003 0|1:1:0,1,0 0|0:0.471:0.584,0.362,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.3:0.72,0.26,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.117:0.887,0.11,0.004 0|0:0.213:0.799,0.19,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.807,0.182,0.011 0|0:0.222:0.785,0.208,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.102:0.898,0.102,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.77,0.23,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.187:0.821,0.171,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.823,0.17,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.7,0.266,0.034 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.486:0.708,0.098,0.194 0|0:0.122:0.881,0.117,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.269:0.756,0.219,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.798,0.183,0.019 0|0:0:1,0,0 0|0:0.362:0.675,0.289,0.036 0|0:0.261:0.751,0.238,0.012 0|1:1:0,1,0 0|1:0.423:0.623,0.331,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.8,0.192,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.181:0.824,0.17,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.831,0.159,0.011 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.898,0.098,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.704,0.295,0.001 0|0:0:1,0,0 +3 15505717 SNP-3.15504363. A G . PASS AR2=1;DR2=1;AF=0.424 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15507530 SNP-3.15506176. A G . PASS AR2=0.992;DR2=0.995;AF=0.432 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.862,0.131,0.008 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.111:0.89,0.109,0.001 1|0:1:0,1,0 1|1:1.629:0.023,0.324,0.653 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.102:0.902,0.095,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.592:0.424,0.559,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.45:0.555,0.441,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 0|1:1:0,1,0 1|1:2:0,0,1 +3 15508267 SNP-3.15506913. C A . PASS AR2=0.995;DR2=0.995;AF=0.366 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.278:0.734,0.254,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.129:0,0.87,0.129 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.911,0.088,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.887,0.11,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0.113:0.888,0.111,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.126,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15511291 SNP-3.15509937. A G . PASS AR2=1;DR2=1;AF=0.426 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15512315 SNP-3.15510961. A G . PASS AR2=1;DR2=1;AF=0.23 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15514427 SNP-3.15513073. A G . PASS AR2=0.995;DR2=0.996;AF=0.454 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.001 1|0:1:0,1,0 0|0:0.176:0.828,0.169,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.87,0.122,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.292:0.73,0.247,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.24:0.766,0.228,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.929,0.067,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15516480 SNP-3.15515126. C A . PASS AR2=0.988;DR2=0.992;AF=0.365 GT:DS:GP 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.096:0.904,0.096,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.059:0.943,0.056,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.563:0.437,0.563,0 0|1:0.523:0.478,0.522,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.969:0.205,0.621,0.174 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|1:1:0,1,0 0|0:0.294:0.706,0.294,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0.002,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:0.571:0.431,0.568,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15519829 SNP-3.15518475. A G . PASS AR2=0.997;DR2=0.997;AF=0.402 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.068,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.252:0.75,0.248,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.955:0.045,0.955,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.911:0.001,0.086,0.913 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15523120 SNP-3.15521766. C A . PASS AR2=0.987;DR2=0.99;AF=0.313 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.552:0.034,0.38,0.586 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.84:0.002,0.157,0.841 1|0:0.951:0.278,0.494,0.228 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.521:0.06,0.358,0.582 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.755:0.016,0.213,0.771 0|0:0:1,0,0 1|0:1.112:0.202,0.483,0.315 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15523284 SNP-3.15521930. A G . PASS AR2=0.994;DR2=0.995;AF=0.416 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.007,0.184,0.809 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.009,0.225,0.766 1|1:1.899:0.001,0.099,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.799:0.01,0.181,0.809 0|0:0:1,0,0 1|1:1.834:0.008,0.151,0.842 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0,0.06,0.939 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.731:0.022,0.226,0.752 0|0:0:1,0,0 1|1:2:0,0,1 +3 15524641 SNP-3.15523287. C A . PASS AR2=0.935;DR2=0.947;AF=0.484 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0,0.238,0.762 0|1:1.083:0.056,0.805,0.139 1|1:1.57:0.034,0.361,0.605 1|1:1.638:0.031,0.3,0.669 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.018:0.215,0.552,0.233 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.116:0.19,0.504,0.306 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.871:0.14,0.849,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.548:0.033,0.385,0.581 1|1:2:0,0,1 1|1:1.836:0.007,0.15,0.843 1|1:2:0,0,1 1|1:1.646:0.041,0.272,0.687 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.879:0.32,0.481,0.199 0|0:0.656:0.381,0.581,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.793:0.244,0.718,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.331:0.094,0.482,0.425 0|0:0.276:0.776,0.171,0.053 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.188:0.117,0.578,0.305 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0.003,0.057,0.94 1|1:2:0,0,1 1|1:1.825:0.008,0.159,0.833 1|1:2:0,0,1 1|1:1.577:0.043,0.336,0.621 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.523:0.053,0.371,0.576 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.529:0.056,0.36,0.585 1|1:1.555:0.047,0.351,0.602 1|1:1.531:0.055,0.359,0.586 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:1.747:0.004,0.244,0.752 1|1:1.789:0.005,0.202,0.793 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.74:0.013,0.235,0.753 0|0:0:1,0,0 1|1:1.673:0.019,0.289,0.692 0|0:0:1,0,0 1|1:1.637:0.034,0.295,0.671 0|0:0:1,0,0 1|1:1.879:0.001,0.118,0.88 0|0:0:1,0,0 1|1:1.649:0.085,0.18,0.734 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0,0.136,0.864 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.043:0.13,0.698,0.173 1|1:2:0,0,1 1|1:1.751:0.011,0.226,0.763 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.301:0.118,0.463,0.419 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.054:0.946,0.053,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.044:0.22,0.516,0.264 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.065:0.937,0.062,0.001 1|0:1.051:0.191,0.567,0.242 1|0:1.599:0.032,0.336,0.632 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.908,0.09,0.002 1|0:1.285:0.101,0.513,0.386 1|1:2:0,0,1 0|1:1.098:0.174,0.553,0.272 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.07:0.931,0.067,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.943,0.056,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.743:0.025,0.207,0.768 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.008,0.097,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.005,0.095,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.003,0.046,0.951 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 15529204 SNP-3.15527850. A G . PASS AR2=0.997;DR2=0.998;AF=0.415 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.211:0.002,0.784,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.983:0,0.016,0.983 1|1:1.999:0,0.001,0.999 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.259:0.001,0.738,0.261 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15529402 SNP-3.15528048. C A . PASS AR2=0.999;DR2=0.999;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 +3 15530319 SNP-3.15528965. A G . PASS AR2=0.996;DR2=0.997;AF=0.289 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.141:0.042,0.775,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.619:0.004,0.373,0.623 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15530704 SNP-3.15529350. A G . PASS AR2=0.983;DR2=0.987;AF=0.49 GT:DS:GP 1|1:1.79:0.009,0.191,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.542:0.469,0.519,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.002,0.124,0.874 1|1:1.735:0.018,0.229,0.753 0|1:1.451:0.055,0.44,0.505 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.007,0.155,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.006,0.153,0.841 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.774:0.013,0.199,0.787 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.194:0.816,0.173,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.003,0.106,0.89 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.816,0.168,0.016 0|1:1:0,1,0 0|0:0.198:0.817,0.168,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.009,0.173,0.819 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.943:0.001,0.054,0.944 1|1:2:0,0,1 1|1:1.926:0.001,0.072,0.927 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.883,0.11,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.84,0.15,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.002,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 +3 15533512 SNP-3.15532158. A G . PASS AR2=0.956;DR2=0.962;AF=0.414 GT:DS:GP 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.994:0.274,0.458,0.268 0|0:0.489:0.571,0.37,0.059 1|1:2:0,0,1 0|1:1.115:0.177,0.531,0.292 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:1.822:0.008,0.161,0.83 0|1:1.166:0.158,0.519,0.324 1|1:2:0,0,1 0|0:0.698:0.41,0.483,0.107 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.862:0.009,0.12,0.871 1|1:1.722:0.015,0.247,0.738 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.658:0.043,0.256,0.701 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.761:0.356,0.527,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.904:0.001,0.093,0.906 1|1:1.939:0.001,0.06,0.94 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.948 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 0|1:0.911:0.09,0.909,0.001 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:1.651:0.052,0.246,0.703 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.007,0.146,0.847 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.809:0.206,0.78,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.132:0.012,0.845,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0.006,0.157,0.837 1|1:2:0,0,1 1|1:1.805:0.007,0.181,0.812 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.002,0.075,0.923 0|0:0:1,0,0 1|0:0.894:0.309,0.489,0.203 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.005,0.091,0.904 0|1:0.965:0.245,0.545,0.21 1|0:1.285:0.08,0.554,0.365 1|1:1.883:0.003,0.11,0.887 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.641:0.024,0.31,0.665 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.052,0.287,0.662 0|0:0:1,0,0 1|1:1.045:0.224,0.506,0.27 1|1:1.862:0.007,0.123,0.869 0|0:0:1,0,0 0|1:0.984:0.266,0.484,0.25 0|1:0.914:0.292,0.501,0.207 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15534597 SNP-3.15533243. C A . PASS AR2=0.985;DR2=0.988;AF=0.464 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.018,0.199,0.782 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.816:0.01,0.164,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:1.818:0.011,0.161,0.829 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.775:0.013,0.199,0.788 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.006,0.071,0.923 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:1.821:0.029,0.121,0.85 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:1.77:0.013,0.205,0.783 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.011,0.161,0.829 1|1:1.818:0.011,0.161,0.829 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.818:0.011,0.161,0.829 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.711:0.028,0.232,0.74 1|1:1.586:0.017,0.381,0.602 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.011,0.161,0.829 0|0:0:1,0,0 1|1:1.732:0.018,0.232,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0.012,0.117,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15534832 SNP-3.15533478. C A . PASS AR2=0.999;DR2=0.999;AF=0.486 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.003,0.171,0.826 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.001,0.072,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15535412 SNP-3.15534058. A G . PASS AR2=0.982;DR2=0.985;AF=0.311 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.009,0.165,0.825 0|0:0:1,0,0 0|0:0.729:0.4,0.47,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.01,0.188,0.802 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.861:0.004,0.131,0.865 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.549:0.033,0.385,0.582 1|1:2:0,0,1 1|1:1.925:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.002,0.125,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.724:0.02,0.237,0.744 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.624:0.029,0.317,0.653 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.793:0.01,0.188,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.006,0.16,0.834 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.885:0.001,0.112,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.004,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.007,0.168,0.825 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.016,0.198,0.787 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.005,0.108,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 +3 15550180 SNP-3.15548826. A G . PASS AR2=0.996;DR2=0.996;AF=0.288 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.001,0.114,0.884 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 0|1:0.915:0.098,0.888,0.014 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.001,0.08,0.919 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.843:0.004,0.148,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.885:0.002,0.111,0.887 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.907:0.001,0.09,0.908 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.888:0.004,0.103,0.893 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15550690 SNP-3.15549336. C A . PASS AR2=0.993;DR2=0.994;AF=0.494 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.9:0.002,0.097,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.01,0.189,0.802 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.165:0.841,0.154,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0,0.062,0.938 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0,0.069,0.931 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0.003,0.111,0.886 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0,0.068,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.944:0.002,0.052,0.946 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.844:0.008,0.14,0.852 1|1:1.914:0.002,0.082,0.916 1|1:2:0,0,1 1|1:1.893:0.003,0.101,0.896 0|0:0:1,0,0 +3 15550878 SNP-3.15549524. A G . PASS AR2=0.996;DR2=0.997;AF=0.322 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.585:0.537,0.34,0.123 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15551274 SNP-3.15549920. A G . PASS AR2=0.979;DR2=0.982;AF=0.491 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.704:0.024,0.249,0.728 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.193:0.807,0.193,0 1|1:1.937:0,0.062,0.938 1|1:1.763:0.016,0.205,0.779 1|1:2:0,0,1 1|1:1.927:0,0.072,0.928 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.001,0.102,0.896 1|1:2:0,0,1 1|1:1.932:0.001,0.067,0.933 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.909:0.001,0.088,0.911 1|1:1.849:0.004,0.142,0.853 0|1:0.676:0.325,0.675,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.877:0.002,0.119,0.879 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.005,0.083,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.794:0.025,0.157,0.818 1|1:1.969:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.893:0.003,0.1,0.896 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.003,0.113,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.001,0.081,0.918 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.003,0.114,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.681:0.005,0.309,0.686 1|1:1.556:0.026,0.391,0.582 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.797:0.006,0.19,0.803 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.723:0.025,0.228,0.747 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.799:0.003,0.196,0.802 1|1:1.867:0.001,0.13,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.722:0.024,0.229,0.746 1|1:1.905:0.001,0.093,0.906 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:1.907:0.002,0.09,0.908 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.003,0.108,0.889 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15553792 SNP-3.15552438. A G . PASS AR2=0.996;DR2=0.996;AF=0.229 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.793,0.194,0.013 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.034:0.966,0.034,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.168:0.846,0.14,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15554798 SNP-3.15553444. C A . PASS AR2=0.998;DR2=0.998;AF=0.452 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.153:0.854,0.139,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.906,0.093,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.13:0.873,0.123,0.003 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15558056 SNP-3.15556702. C A . PASS AR2=0.993;DR2=0.995;AF=0.461 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.851,0.144,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.826,0.172,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.055:0.946,0.054,0.001 0|0:0.018:0.982,0.018,0 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.73:0.281,0.709,0.01 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.952,0.046,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:1.514:0,0.485,0.514 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.068:0.933,0.065,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.894,0.106,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.062,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.96,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 +3 15558608 SNP-3.15557254. A G . PASS AR2=0.968;DR2=0.976;AF=0.413 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:1.866:0.005,0.124,0.871 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.33:0.703,0.264,0.033 1|0:1:0,1,0 0|0:0.422:0.633,0.313,0.054 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.759:0.016,0.209,0.775 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.181:0.819,0.181,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.865:0.005,0.125,0.87 1|1:2:0,0,1 1|1:1.904:0.001,0.094,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0.363:0.674,0.29,0.037 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.674,0.295,0.031 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.451:0.599,0.351,0.05 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0.262:0.753,0.232,0.015 1|1:1.853:0.006,0.134,0.859 0|0:0.073:0.928,0.072,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 1|1:1.83:0.001,0.168,0.831 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.131:0.884,0.102,0.015 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.12:0.885,0.11,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.307:0.722,0.249,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.167:0.85,0.134,0.017 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.9:0.003,0.093,0.903 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.795:0.452,0.302,0.247 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.849:0.007,0.138,0.856 1|1:1.759:0.025,0.19,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.737:0.402,0.458,0.139 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.127:0.888,0.097,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 15560579 SNP-3.15559225. A G . PASS AR2=0.99;DR2=0.991;AF=0.379 GT:DS:GP 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.675:0.002,0.322,0.676 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.002,0.076,0.922 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.855:0.006,0.134,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0,0.046,0.954 1|1:1.898:0.003,0.097,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.836:0.002,0.159,0.839 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.877:0.127,0.87,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.125:0.875,0.125,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.767:0.011,0.211,0.778 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0.001,0.026,0.973 1|1:1.959:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.912:0.006,0.077,0.918 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1.041:0.249,0.461,0.29 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.002,0.078,0.92 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15562827 SNP-3.15561473. A G . PASS AR2=0.968;DR2=0.976;AF=0.193 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.622:0.505,0.368,0.127 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.862,0.136,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.867,0.132,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.079,0.003 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0.029:0.971,0.028,0 0|0:0.056:0.944,0.055,0.001 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.41:0.625,0.339,0.035 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.385:0.627,0.361,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.526:0.517,0.44,0.043 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.798,0.195,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.844,0.156,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.947:0.267,0.518,0.214 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.228:0.789,0.193,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.667:0.401,0.531,0.068 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.756,0.193,0.051 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.902,0.093,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15566406 SNP-3.15565052. C A . PASS AR2=0.975;DR2=0.98;AF=0.378 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.043:0.074,0.81,0.117 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.978:0.107,0.809,0.084 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.606:0.06,0.275,0.665 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|0:1.15:0.024,0.802,0.174 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.96:0.113,0.814,0.073 1|1:1.997:0,0.003,0.997 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.953:0.127,0.792,0.081 0|0:0.008:0.992,0.008,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.915:0.179,0.727,0.094 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.065:0.031,0.873,0.096 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.003,0.093,0.905 0|0:0.003:0.997,0.003,0 0|1:1:0,1,0 1|0:0.96:0.098,0.844,0.058 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.056:0.027,0.89,0.083 1|1:1.911:0.002,0.084,0.914 1|1:1.952:0.001,0.045,0.953 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.055:0.099,0.746,0.154 0|1:1:0,1,0 1|1:1.812:0.001,0.186,0.813 1|1:2:0,0,1 0|0:0.033:0.967,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.061:0.059,0.82,0.121 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.935:0.002,0.062,0.937 1|1:2:0,0,1 1|1:1.171:0.243,0.344,0.413 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.881:0,0.119,0.881 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.779:0.009,0.203,0.788 1|0:0.891:0.242,0.625,0.133 0|0:0:1,0,0 +3 15567183 SNP-3.15565829. C A . PASS AR2=0.991;DR2=0.992;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.802:0.011,0.175,0.813 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.001 1|1:1.881:0.003,0.114,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.003,0.083,0.914 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.792:0.01,0.187,0.803 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.032:0.071,0.825,0.103 1|1:1.849:0.006,0.139,0.855 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.984:0,0.016,0.984 1|1:1.998:0,0.002,0.998 1|1:1.954:0,0.046,0.954 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.916,0.082,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.044,0.956 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|0:1.294:0,0.706,0.294 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.918:0.001,0.08,0.919 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 +3 15568341 SNP-3.15566987. C A . PASS AR2=0.98;DR2=0.987;AF=0.395 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.561:0.041,0.357,0.602 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.497:0.046,0.411,0.543 1|1:1.485:0.088,0.34,0.573 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.575:0.001,0.423,0.576 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.456:0.072,0.4,0.528 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.473:0.044,0.439,0.517 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.799:0.002,0.197,0.801 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0.014,0.14,0.845 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.839:0.009,0.144,0.847 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.004,0.09,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.001,0.314,0.685 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15574292 SNP-3.15572938. C A . PASS AR2=0.964;DR2=0.974;AF=0.409 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.555:0.048,0.349,0.603 1|1:2:0,0,1 1|1:1.733:0.016,0.234,0.749 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.359:0.124,0.394,0.482 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.001,0.093,0.906 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.018,0.263,0.719 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.011,0.149,0.841 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.001,0.162,0.838 0|1:1.654:0.03,0.285,0.684 1|1:1.736:0.033,0.198,0.769 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.515:0.063,0.359,0.578 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.385:0.107,0.402,0.492 1|1:1.588:0.038,0.336,0.626 1|0:1.477:0.064,0.396,0.54 1|1:1.648:0.022,0.309,0.669 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:1.9:0.002,0.095,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.9:0.003,0.094,0.903 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.053,0.946 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0.006,0.178,0.816 0|0:0:1,0,0 1|1:1.851:0.001,0.146,0.852 1|1:1.372:0.11,0.407,0.483 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.697:0.021,0.26,0.719 1|1:1.772:0.006,0.216,0.778 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.784:0.008,0.2,0.792 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.002,0.105,0.893 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.007,0.18,0.813 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.093,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15575719 SNP-3.15574365. A G . PASS AR2=0.98;DR2=0.984;AF=0.306 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.732:0.018,0.232,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.946:0,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.962:0,0.038,0.962 1|1:1.872:0.004,0.12,0.876 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.709:0.017,0.256,0.726 1|1:1.844:0.003,0.15,0.847 1|1:1.732:0.017,0.233,0.749 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.709:0.381,0.529,0.09 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.009,0.21,0.782 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.007,0.148,0.845 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.506:0.06,0.373,0.566 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.884:0.004,0.109,0.887 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.629:0.022,0.327,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.558:0.037,0.368,0.595 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.719:0.018,0.244,0.737 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15576415 SNP-3.15575061. C A . PASS AR2=0.999;DR2=0.999;AF=0.454 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.075:0,0.925,0.075 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15576739 SNP-3.15575385. A G . PASS AR2=0.972;DR2=0.979;AF=0.459 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.611:0.06,0.269,0.671 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.597:0.036,0.332,0.633 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.089:0.912,0.088,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.007,0.157,0.835 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.8:0.009,0.183,0.808 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.747:0.015,0.223,0.762 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.011,0.188,0.801 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.815:0.008,0.168,0.823 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:1.839:0.006,0.149,0.845 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.526:0.476,0.522,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.011,0.182,0.807 1|1:1.834:0.006,0.155,0.839 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.786:0.01,0.194,0.796 0|0:0:1,0,0 1|0:0.925:0.248,0.58,0.173 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.393:0.082,0.443,0.475 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0.003,0.069,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.436:0.087,0.39,0.523 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.611:0.053,0.283,0.664 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.005,0.082,0.914 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.816:0.009,0.167,0.825 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.81:0.013,0.164,0.823 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15577351 SNP-3.15575997. A G . PASS AR2=0.997;DR2=0.998;AF=0.358 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.096,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.298:0.706,0.291,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.363:0.002,0.634,0.365 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15577952 SNP-3.15576598. A G . PASS AR2=1;DR2=1;AF=0.348 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15578355 SNP-3.15577001. C A . PASS AR2=0.975;DR2=0.982;AF=0.423 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.499:0.068,0.365,0.567 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0.183:0.819,0.179,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.718:0.018,0.246,0.736 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.003,0.046,0.951 1|0:1:0,1,0 1|1:1.681:0.024,0.272,0.705 0|0:0:1,0,0 1|1:1.344:0.108,0.439,0.453 1|0:1:0,1,0 1|0:1.544:0.041,0.373,0.586 1|1:1.644:0.018,0.321,0.662 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.721:0.009,0.261,0.73 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.36:0.151,0.339,0.51 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.753:0.014,0.22,0.766 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.86:0,0.14,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.268:0.797,0.137,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.005,0.2,0.795 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0.001,0.025,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.807:0.006,0.181,0.813 0|0:0:1,0,0 0|0:0:1,0,0 +3 15578684 SNP-3.15577330. C A . PASS AR2=0.977;DR2=0.982;AF=0.393 GT:DS:GP 0|0:0:1,0,0 1|1:1.878:0.005,0.111,0.884 0|0:0:1,0,0 1|1:1.912:0.003,0.082,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.182:0.151,0.516,0.333 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.24:0.762,0.237,0.002 0|0:0:1,0,0 0|1:1.351:0.083,0.484,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.06:0.206,0.528,0.266 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.979:0.244,0.532,0.223 0|1:1.332:0.102,0.464,0.434 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.409:0.064,0.463,0.473 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0,0.079,0.92 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.676:0.035,0.253,0.711 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.001,0.079,0.92 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.544:0.05,0.356,0.594 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.581:0.047,0.324,0.628 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15579534 SNP-3.15578180. A G . PASS AR2=0.969;DR2=0.975;AF=0.329 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.722:0.019,0.239,0.742 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.758,0.239,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.918,0.079,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.706:0.023,0.247,0.729 0|0:0.171:0.832,0.165,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.01,0.185,0.805 1|1:1.839:0.01,0.141,0.849 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.849:0.212,0.727,0.061 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.768:0.015,0.202,0.783 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.002,0.068,0.931 1|1:2:0,0,1 1|1:1.788:0.011,0.19,0.799 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.724:0.463,0.351,0.186 0|0:0:1,0,0 1|1:1.463:0.042,0.453,0.505 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.001 1|1:2:0,0,1 0|0:0.085:0.918,0.079,0.003 0|0:0.1:0.901,0.097,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.657:0.032,0.279,0.689 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.935,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.825:0.008,0.158,0.834 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.009,0.151,0.84 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.88,0.115,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.905,0.092,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.846,0.139,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.002,0.093,0.905 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.002,0.071,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.854:0.007,0.132,0.861 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.943:0.234,0.589,0.177 0|0:0:1,0,0 1|1:2:0,0,1 +3 15586161 SNP-3.15584807. A G . PASS AR2=0.984;DR2=0.987;AF=0.409 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.861:0.005,0.129,0.866 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.844,0.152,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.809,0.18,0.011 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.001,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.238:0.777,0.208,0.015 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.203:0.801,0.195,0.004 1|1:1.892:0.008,0.092,0.9 0|0:0:1,0,0 1|1:1.734:0.007,0.252,0.741 1|1:2:0,0,1 0|0:0.148:0.856,0.139,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.806,0.184,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.089,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.283:0.735,0.247,0.018 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.074:0.926,0.073,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.23:0.784,0.201,0.014 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.855,0.14,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.834,0.157,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.002 1|1:1.986:0,0.014,0.986 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.873,0.119,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.266:0.754,0.225,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15587687 SNP-3.15586333. A G . PASS AR2=0.919;DR2=0.935;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.352:0.68,0.288,0.032 0|0:0.331:0.72,0.229,0.051 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.046:0.177,0.599,0.224 0|0:0:1,0,0 0|0:0.173:0.827,0.172,0 0|0:0.149:0.853,0.145,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.297:0.727,0.25,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.633:0.454,0.46,0.087 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.238:0.776,0.21,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.665:0.456,0.423,0.121 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.199:0.809,0.182,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.177:0.831,0.162,0.007 1|1:2:0,0,1 0|0:0.185:0.826,0.162,0.011 0|0:0.273:0.743,0.241,0.016 0|0:0.103:0.902,0.094,0.004 0|0:0:1,0,0 0|0:0.246:0.769,0.216,0.015 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.249:0.768,0.214,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.095:0.908,0.088,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.312:0.72,0.248,0.032 0|0:0:1,0,0 0|1:0.833:0.271,0.625,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.684:0.42,0.476,0.104 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.315:0.705,0.274,0.02 1|0:0.709:0.393,0.505,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.725,0.249,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0.255:0.762,0.221,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.351:0.677,0.296,0.027 0|0:0:1,0,0 0|0:0.296:0.726,0.252,0.022 0|0:0.282:0.736,0.246,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.859,0.133,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.88:0.319,0.483,0.198 1|1:2:0,0,1 0|0:0.265:0.763,0.208,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.903:0.302,0.493,0.205 1|0:0.876:0.305,0.514,0.181 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.867:0.312,0.509,0.179 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.913,0.087,0 0|0:0.217:0.795,0.193,0.012 1|1:2:0,0,1 0|0:0.193:0.815,0.177,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.523:0.071,0.335,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.101:0.903,0.093,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15588394 SNP-3.15587040. C A . PASS AR2=0.973;DR2=0.979;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.305:0.087,0.52,0.392 0|0:0.473:0.586,0.355,0.059 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1.277:0.019,0.685,0.296 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.01,0.174,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.366:0.021,0.592,0.387 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.731:0.02,0.229,0.751 1|1:1.574:0.047,0.332,0.621 0|1:1:0,1,0 0|1:1.244:0.136,0.484,0.38 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.689:0.013,0.284,0.702 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.017,0.228,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.321:0.692,0.296,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.771:0.016,0.197,0.787 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:1.885:0,0.114,0.885 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.007,0.177,0.816 1|1:1.751:0.026,0.197,0.777 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.076,0.921 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.002,0.107,0.891 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.75:0.014,0.222,0.764 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.738:0.017,0.227,0.755 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15589168 SNP-3.15587814. A G . PASS AR2=0.911;DR2=0.934;AF=0.275 GT:DS:GP 0|0:0.091:0.913,0.084,0.003 0|0:0.245:0.778,0.199,0.023 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.466:0.591,0.351,0.057 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.052:0.287,0.375,0.338 1|0:0.926:0.295,0.485,0.221 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.006,0.116,0.878 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.465:0.072,0.391,0.537 1|1:1.411:0.128,0.332,0.54 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.838,0.159,0.003 1|1:2:0,0,1 0|0:0.772:0.41,0.408,0.182 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.89,0.105,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 1|1:2:0,0,1 0|0:0.397:0.614,0.375,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.759:0.016,0.209,0.775 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.249:0.766,0.218,0.016 0|0:0.182:0.818,0.182,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.617:0.478,0.428,0.094 1|0:1.1:0.114,0.672,0.214 1|1:2:0,0,1 0|1:1.275:0.114,0.498,0.389 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.757,0.238,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.502:0.541,0.416,0.043 1|0:0.513:0.541,0.405,0.054 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.654:0.372,0.603,0.025 0|0:0.335:0.681,0.303,0.016 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.825,0.17,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.006,0.061,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.619:0.048,0.284,0.668 1|1:2:0,0,1 1|1:1.802:0.005,0.188,0.807 0|0:0.145:0.861,0.133,0.006 0|0:0.001:0.999,0.001,0 1|1:1.934:0.001,0.064,0.935 1|0:0.537:0.52,0.422,0.058 0|0:0:1,0,0 0|0:0.163:0.847,0.144,0.009 0|0:0.246:0.776,0.202,0.022 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.347:0.691,0.271,0.038 1|1:1.778:0.011,0.2,0.789 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.222:0.129,0.519,0.351 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.808:0.011,0.169,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.106:0.897,0.101,0.002 1|1:2:0,0,1 0|0:0.339:0.691,0.279,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.267:0.751,0.231,0.018 0|0:0.164:0.842,0.152,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.247:0.147,0.459,0.394 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.033,0.967 0|0:0.617:0.525,0.332,0.142 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.647:0.026,0.3,0.674 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.248:0.767,0.217,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.409:0.593,0.406,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15591769 SNP-3.15590415. A G . PASS AR2=0.971;DR2=0.976;AF=0.416 GT:DS:GP 1|1:1.891:0.005,0.1,0.895 0|0:0:1,0,0 1|1:1.825:0.006,0.163,0.831 1|1:1.832:0.018,0.133,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.378:0.639,0.343,0.017 0|0:0.176:0.833,0.157,0.01 1|0:1:0,1,0 0|0:0.19:0.82,0.171,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.904,0.091,0.005 0|0:0:1,0,0 1|1:1.844:0.008,0.14,0.852 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.878,0.117,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.891:0.002,0.106,0.892 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.887:0.005,0.104,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.001:0.042,0.916,0.043 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.892:0.004,0.1,0.896 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.74:0.012,0.236,0.752 1|1:2:0,0,1 1|1:1.865:0.005,0.126,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.067:0.088,0.757,0.155 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.837:0.318,0.527,0.155 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.036:0.137,0.689,0.173 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.31:0.721,0.247,0.031 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.876:0.005,0.115,0.881 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.017,0.357,0.626 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.193:0.814,0.178,0.008 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.949:0,0.05,0.95 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.181:0.829,0.161,0.01 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.078:0.922,0.078,0 0|0:0:1,0,0 1|1:1.834:0.009,0.148,0.843 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.002,0.055,0.943 1|1:2:0,0,1 1|1:1.901:0.005,0.09,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.501:0.608,0.283,0.109 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.918,0.08,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.001,0.064,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.002,0.061,0.937 1|1:1.835:0.007,0.151,0.842 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15592964 SNP-3.15591610. A G . PASS AR2=0.949;DR2=0.959;AF=0.244 GT:DS:GP 0|0:0.236:0.78,0.204,0.016 0|0:0:1,0,0 0|0:0.278:0.742,0.239,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.765,0.22,0.015 1|1:2:0,0,1 1|1:1.941:0.004,0.052,0.945 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.263:0.757,0.223,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.205:0.805,0.184,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.329:0.707,0.258,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|1:1:0,1,0 0|0:0.237:0.78,0.203,0.017 1|1:1.92:0.001,0.079,0.92 0|0:0.193:0.821,0.165,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.108,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.253:0.763,0.22,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.239:0.776,0.209,0.015 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.885,0.113,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0.261:0.753,0.233,0.014 1|1:2:0,0,1 0|0:0.395:0.644,0.318,0.038 1|1:2:0,0,1 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.141:0.866,0.127,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.306:0.714,0.265,0.02 0|0:0.119:0.884,0.114,0.003 0|0:0.12:0.883,0.115,0.002 0|0:0.146:0.861,0.132,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.406:0.614,0.365,0.021 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.776,0.208,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.889,0.104,0.007 0|0:0.215:0.797,0.19,0.013 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.309:0.716,0.258,0.026 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.8,0.187,0.013 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.064:0.94,0.057,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.868,0.125,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0.033:0.967,0.032,0.001 0|0:0:1,0,0 0|1:1.39:0.034,0.543,0.424 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.206:0.797,0.2,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.281:0.739,0.241,0.02 0|0:0.219:0.794,0.193,0.013 0|0:0.053:0.949,0.05,0.001 0|0:0:1,0,0 +3 15593033 SNP-3.15591679. A G . PASS AR2=0.991;DR2=0.992;AF=0.407 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.869,0.126,0.005 0|0:0.094:0.909,0.087,0.003 0|0:0.143:0.863,0.131,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.822,0.149,0.029 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.001 0|0:0.114:0.889,0.108,0.003 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.956:0.002,0.041,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.091:0.912,0.084,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.935:0,0.065,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.051,0.002 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.048,0.002 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.919:0,0.081,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.932,0.067,0.001 0|0:0.004:0.996,0.004,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15593083 SNP-3.15591729. C A . PASS AR2=0.927;DR2=0.942;AF=0.307 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.655:0.413,0.52,0.068 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.303:0.098,0.501,0.401 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.326:0.105,0.463,0.432 1|1:1.992:0,0.007,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.647:0.038,0.277,0.685 0|0:0:1,0,0 1|1:1.645:0.038,0.278,0.683 1|1:1.846:0.001,0.153,0.847 1|1:1.888:0.003,0.106,0.891 1|1:2:0,0,1 1|1:1.579:0.04,0.341,0.619 1|1:1.878:0.004,0.114,0.882 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.947:0.267,0.518,0.215 1|1:1.863:0.004,0.128,0.868 1|1:1.849:0.007,0.137,0.856 1|1:2:0,0,1 1|0:1.436:0.03,0.505,0.466 1|0:1.086:0.161,0.593,0.247 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.017:0.168,0.647,0.185 0|0:0:1,0,0 0|1:1.228:0.067,0.639,0.294 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|0:1.021:0.236,0.506,0.258 0|0:0:1,0,0 1|1:1.424:0.061,0.454,0.485 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.453:0.077,0.392,0.53 1|1:1.8:0.011,0.177,0.811 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.522:0.013,0.453,0.535 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.861:0.008,0.123,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.003,0.177,0.82 0|0:0:1,0,0 1|1:1.529:0.051,0.37,0.579 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.464:0.063,0.41,0.527 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.41:0.142,0.306,0.552 1|1:2:0,0,1 1|1:1.84:0,0.16,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.019,0.236,0.745 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.808:0.007,0.178,0.815 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.245:0.118,0.519,0.363 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.621:0.433,0.514,0.053 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.003,0.076,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.649:0.038,0.275,0.687 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.574:0,0.426,0.574 0|1:1.024:0.217,0.542,0.241 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.733:0.014,0.238,0.747 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.636:0.038,0.288,0.674 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.848:0.007,0.137,0.856 1|1:2:0,0,1 1|1:1.863:0.006,0.125,0.869 1|1:1.849:0.007,0.137,0.856 1|1:2:0,0,1 1|1:1.827:0.008,0.157,0.835 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.166:0.117,0.599,0.284 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15593983 SNP-3.15592629. C A . PASS AR2=0.989;DR2=0.991;AF=0.378 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.93:0.07,0.93,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.273:0.091,0.545,0.364 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.786:0.014,0.187,0.8 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.641:0.015,0.33,0.655 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.935:0.002,0.06,0.938 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.794:0.015,0.177,0.809 1|1:2:0,0,1 1|1:1.692:0.032,0.243,0.724 1|1:1.922:0,0.078,0.922 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.013,0.174,0.813 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0,0.052,0.948 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0,0.077,0.922 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.001,0.119,0.88 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15596333 SNP-3.15594979. A G . PASS AR2=1;DR2=1;AF=0.387 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15597089 SNP-3.15595735. C A . PASS AR2=1;DR2=1;AF=0.412 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15599575 SNP-3.15598221. A G . PASS AR2=1;DR2=1;AF=0.387 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15600047 SNP-3.15598693. A G . PASS AR2=1;DR2=1;AF=0.418 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15600414 SNP-3.15599060. C A . PASS AR2=1;DR2=1;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15601856 SNP-3.15600502. C A . PASS AR2=1;DR2=1;AF=0.249 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15602755 SNP-3.15601401. C A . PASS AR2=1;DR2=1;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15604306 SNP-3.15602952. A G . PASS AR2=0.968;DR2=0.975;AF=0.44 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.786:0.011,0.191,0.798 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.536:0.553,0.358,0.089 0|0:0.277:0.761,0.201,0.038 0|0:0:1,0,0 0|0:0.594:0.444,0.518,0.038 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.002,0.084,0.913 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.011,0.174,0.815 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.054,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:1.891:0.003,0.103,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.866:0.004,0.127,0.869 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.305:0.726,0.244,0.031 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.881,0.117,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.883,0.112,0.004 1|1:1.97:0,0.029,0.971 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.095:0.909,0.087,0.004 0|0:0:1,0,0 1|1:1.87:0.004,0.122,0.874 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.786:0.004,0.206,0.79 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0,0.181,0.819 1|1:1.843:0.004,0.149,0.847 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.004,0.131,0.865 0|0:0:1,0,0 0|0:0.166:0.844,0.146,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.903,0.097,0 0|1:1.568:0.014,0.405,0.581 0|0:0:1,0,0 1|1:1.808:0.006,0.18,0.814 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.003,0.108,0.888 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.955,0.042,0.003 0|0:0:1,0,0 1|1:1.318:0.032,0.619,0.35 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.269:0.753,0.226,0.021 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0,0.136,0.864 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 1|1:1.646:0.009,0.335,0.656 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.952,0.047,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.793:0.315,0.578,0.107 0|0:0.229:0.781,0.208,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.149:0.862,0.126,0.012 1|1:1.868:0.004,0.123,0.873 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.142:0.866,0.127,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.81:0.009,0.172,0.819 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15605931 SNP-3.15604577. A G . PASS AR2=0.99;DR2=0.993;AF=0.449 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.685:0.444,0.426,0.129 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.254:0.765,0.216,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.838,0.152,0.011 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.841,0.154,0.005 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.228:0.789,0.195,0.017 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.001,0.07,0.928 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.225:0.784,0.206,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.068:0.936,0.061,0.004 1|1:2:0,0,1 +3 15606188 SNP-3.15604834. A G . PASS AR2=0.99;DR2=0.992;AF=0.389 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.956:0.001,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.005,0.127,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.888:0.003,0.106,0.891 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.021,0.215,0.765 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.747:0.016,0.22,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.008,0.244,0.748 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.003,0.143,0.854 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.053,0.945 0|0:0:1,0,0 1|1:1.891:0.003,0.103,0.894 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.905:0.002,0.092,0.907 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.867:0.004,0.124,0.872 1|1:1.477:0.072,0.379,0.549 0|0:0:1,0,0 1|1:2:0,0,1 +3 15606329 SNP-3.15604975. A G . PASS AR2=0.889;DR2=0.917;AF=0.478 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.511:0.495,0.498,0.006 1|1:1.42:0.087,0.406,0.507 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.505:0.047,0.4,0.552 1|1:1.46:0.051,0.438,0.511 1|1:1.771:0.016,0.197,0.787 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.602:0.041,0.316,0.643 1|1:1.566:0.049,0.337,0.614 1|1:1.657:0.037,0.269,0.694 1|1:1.425:0.069,0.436,0.495 1|1:2:0,0,1 1|1:1.402:0.084,0.43,0.486 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.214:0.156,0.474,0.37 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.519:0.04,0.401,0.559 1|0:1.318:0.111,0.46,0.429 0|1:0.956:0.269,0.507,0.224 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.392:0.093,0.421,0.485 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.159:0.178,0.484,0.338 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.392:0.093,0.422,0.485 1|1:2:0,0,1 1|1:1.875:0.008,0.109,0.883 1|1:2:0,0,1 0|1:1.146:0.155,0.543,0.302 1|0:1.306:0.108,0.477,0.414 1|1:2:0,0,1 1|1:1.704:0.011,0.275,0.714 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.049:0.222,0.506,0.272 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.615:0.037,0.31,0.652 0|1:1.28:0.115,0.489,0.396 0|0:0:1,0,0 0|1:1.092:0.202,0.504,0.294 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.374:0.645,0.335,0.019 1|1:1.795:0.01,0.186,0.805 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.047:0.223,0.507,0.27 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.394:0.637,0.332,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.875,0.119,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.367:0.64,0.353,0.007 0|0:0:1,0,0 1|1:1.214:0.165,0.456,0.379 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.075:0.204,0.516,0.28 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.723:0.017,0.243,0.74 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.013,0.124,0.863 0|0:0.47:0.576,0.378,0.046 0|0:0:1,0,0 0|0:0.529:0.562,0.347,0.091 0|1:1.373:0.111,0.405,0.484 1|1:2:0,0,1 0|1:1.296:0.132,0.44,0.428 0|0:0.046:0.956,0.043,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.337:0.687,0.288,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.818:0.011,0.161,0.829 0|0:0:1,0,0 1|1:1.524:0.053,0.37,0.577 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.38:0.112,0.397,0.492 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.442:0.062,0.433,0.504 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.382:0.097,0.423,0.479 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.044:0.211,0.533,0.256 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.306:0.122,0.451,0.427 1|1:1.85:0.011,0.129,0.861 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.299:0.132,0.436,0.432 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.566:0.035,0.365,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.935:0.002,0.061,0.937 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.452:0.556,0.436,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.164:0.178,0.479,0.342 1|0:0.923:0.287,0.504,0.209 1|1:2:0,0,1 0|0:0:1,0,0 +3 15607445 SNP-3.15606091. A G . PASS AR2=1;DR2=1;AF=0.488 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15610080 SNP-3.15608726. C A . PASS AR2=0.999;DR2=0.999;AF=0.306 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.992:0.009,0.989,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15610619 SNP-3.15609265. C A . PASS AR2=1;DR2=1;AF=0.298 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15613875 SNP-3.15612521. C A . PASS AR2=0.978;DR2=0.985;AF=0.318 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.431:0.616,0.337,0.047 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.323:0.707,0.262,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.482:0.578,0.361,0.061 0|0:0.464:0.591,0.353,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.906:0,0.094,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.474:0.585,0.357,0.058 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.38:0.641,0.339,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.292:0.735,0.238,0.027 0|1:0.476:0.583,0.358,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.479:0.581,0.359,0.06 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15615734 SNP-3.15614380. C A . PASS AR2=0.999;DR2=0.999;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15617233 SNP-3.15615879. C A . PASS AR2=1;DR2=1;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15618492 SNP-3.15617138. C A . PASS AR2=1;DR2=1;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15618508 SNP-3.15617154. C A . PASS AR2=0.998;DR2=0.999;AF=0.429 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.729:0,0.271,0.729 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.83:0,0.17,0.83 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15625137 SNP-3.15623783. C A . PASS AR2=0.997;DR2=0.998;AF=0.452 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.096,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.015:0,0.985,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.048:0,0.952,0.048 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.825,0.175,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0,0.15,0.85 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15625252 SNP-3.15623898. C A . PASS AR2=0.996;DR2=0.997;AF=0.449 GT:DS:GP 0|0:0.081:0.921,0.077,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.107,0.003 1|0:1:0,1,0 1|0:1.011:0,0.989,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.859,0.135,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15626613 SNP-3.15625259. C A . PASS AR2=0.992;DR2=0.994;AF=0.455 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.003,0.042,0.955 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.712:0,0.287,0.713 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.871:0.138,0.852,0.01 0|0:0.033:0.967,0.032,0 1|0:1.033:0.006,0.955,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.156:0.845,0.154,0.001 1|1:2:0,0,1 1|0:1.2:0.019,0.761,0.22 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.486:0.555,0.404,0.041 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.065:0.936,0.062,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.931,0.069,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15627582 SNP-3.15626228. C A . PASS AR2=0.995;DR2=0.995;AF=0.435 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.019:0,0.981,0.019 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.004,0.096,0.9 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 0|0:0.027:0.974,0.026,0 1|1:1.62:0.01,0.361,0.63 1|1:1.917:0.002,0.078,0.92 1|1:2:0,0,1 1|1:1.817:0.005,0.173,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.005:0.005,0.984,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.083:0.918,0.081,0.001 1|1:1.946:0,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.936,0.061,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15630323 SNP-3.15628969. C A . PASS AR2=1;DR2=1;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15630482 SNP-3.15629128. C A . PASS AR2=0.997;DR2=0.998;AF=0.432 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.361:0.697,0.245,0.058 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.673:0.001,0.325,0.674 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15632541 SNP-3.15631187. C A . PASS AR2=0.97;DR2=0.979;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:1.572:0.049,0.33,0.621 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.713:0.022,0.244,0.734 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.619:0.033,0.315,0.652 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.512:0.04,0.408,0.552 1|1:2:0,0,1 1|1:1.461:0.053,0.433,0.514 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.875:0.135,0.856,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.534:0.052,0.362,0.586 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.544:0.052,0.352,0.596 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.001,0.078,0.921 1|1:2:0,0,1 1|1:1.458:0.073,0.396,0.531 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.022,0.257,0.721 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.796:0.005,0.193,0.801 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.795:0.001,0.202,0.796 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.498:0.063,0.377,0.561 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.004,0.048,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.713:0.022,0.244,0.734 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.718:0.021,0.24,0.739 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15633595 SNP-3.15632241. C A . PASS AR2=1;DR2=1;AF=0.302 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15634843 SNP-3.15633489. C A . PASS AR2=0.986;DR2=0.988;AF=0.426 GT:DS:GP 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.97 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.113:0.036,0.816,0.148 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.676:0.008,0.307,0.685 0|0:0:1,0,0 0|1:0.803:0.333,0.532,0.135 0|0:0.188:0.812,0.188,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.91,0.089,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0.018:0.982,0.018,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.842,0.158,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.018:0.982,0.018,0 1|0:1.025:0.014,0.948,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.186:0.815,0.185,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.156:0.044,0.756,0.2 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.186:0.818,0.178,0.004 1|1:1.902:0.002,0.094,0.904 0|0:0:1,0,0 1|1:1.932:0.001,0.065,0.933 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.186:0.815,0.183,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.747:0.013,0.226,0.761 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.079:0.922,0.076,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.97 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.944,0.054,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15635264 SNP-3.15633910. C A . PASS AR2=1;DR2=1;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.898:0,0.102,0.898 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15638394 SNP-3.15637040. A G . PASS AR2=0.978;DR2=0.983;AF=0.514 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.862:0.008,0.122,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.006,0.164,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.56:0.069,0.302,0.629 1|1:2:0,0,1 1|1:1.794:0.011,0.185,0.804 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.693:0.019,0.269,0.712 0|0:0:1,0,0 1|1:1.803:0.01,0.177,0.813 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.717:0.017,0.25,0.733 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.685:0.019,0.277,0.704 1|1:1.76:0.014,0.211,0.775 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.779:0.012,0.196,0.792 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.753:0.018,0.211,0.771 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.786:0.012,0.189,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0.014,0.207,0.779 1|1:1.808:0.008,0.176,0.816 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.805:0.01,0.176,0.814 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.831:0.008,0.154,0.839 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.663:0.021,0.295,0.684 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.823:0.018,0.14,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.717:0.019,0.244,0.736 0|0:0:1,0,0 1|1:1.959:0.001,0.038,0.96 +3 15638443 SNP-3.15637089. C A . PASS AR2=1;DR2=1;AF=0.434 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15640372 SNP-3.15639018. C A . PASS AR2=0.999;DR2=0.999;AF=0.45 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.073,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.03:0,0.97,0.03 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15641375 SNP-3.15640021. C A . PASS AR2=0.99;DR2=0.991;AF=0.406 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.892:0.003,0.102,0.895 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0.002,0.112,0.885 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.888:0.002,0.108,0.89 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.877:0.123,0.876,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.889:0.002,0.107,0.891 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.203:0.188,0.422,0.391 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.757:0.012,0.218,0.769 0|0:0:1,0,0 1|1:1.927:0.001,0.07,0.929 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.978:0,0.022,0.978 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0.017,0.211,0.772 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.907:0.003,0.087,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.007,0.172,0.821 0|0:0:1,0,0 +3 15642911 SNP-3.15641557. C A . PASS AR2=0.995;DR2=0.996;AF=0.29 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.001,0.163,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.565:0.021,0.392,0.587 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.761:0.002,0.236,0.763 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15644246 SNP-3.15642892. C A . PASS AR2=0.968;DR2=0.978;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.546:0.053,0.348,0.599 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.631:0.029,0.311,0.66 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.521:0.044,0.39,0.565 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.371:0.071,0.487,0.442 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.6:0.49,0.421,0.089 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.002,0.1,0.898 1|1:1.768:0.01,0.213,0.778 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.818:0.013,0.157,0.83 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.863:0.007,0.123,0.87 1|1:1.748:0.015,0.222,0.763 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.585:0.043,0.329,0.628 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.546:0.053,0.348,0.599 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.546:0.053,0.348,0.599 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.546:0.053,0.348,0.599 1|1:1.791:0.016,0.178,0.806 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.79:0.016,0.179,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15645382 SNP-3.15644028. C A . PASS AR2=0.997;DR2=0.998;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.002,0.071,0.927 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.746:0.023,0.209,0.768 1|1:2:0,0,1 0|1:1.745:0.019,0.218,0.763 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15648914 SNP-3.15647560. C A . PASS AR2=1;DR2=1;AF=0.43 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15650573 SNP-3.15649219. C A . PASS AR2=0.999;DR2=0.999;AF=0.44 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.119:0.89,0.1,0.009 0|0:0.042:0.959,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.068,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15651375 SNP-3.15650021. C A . PASS AR2=0.999;DR2=0.999;AF=0.434 GT:DS:GP 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0.001,0.041,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.944,0.054,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.958:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.873:0.005,0.118,0.877 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15661274 SNP-3.15659920. A G . PASS AR2=0.915;DR2=0.935;AF=0.458 GT:DS:GP 1|0:1.374:0.105,0.416,0.479 0|0:0:1,0,0 1|1:1.387:0.08,0.452,0.468 1|1:1.585:0.045,0.325,0.63 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|1:1.379:0.065,0.49,0.444 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.265:0.136,0.464,0.4 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.57:0.06,0.311,0.63 1|1:1.739:0.025,0.21,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.524:0.056,0.363,0.581 0|0:0:1,0,0 1|1:1.008:0.256,0.48,0.264 1|1:2:0,0,1 0|1:1.106:0.22,0.454,0.326 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.005,0.134,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.954:0.068,0.91,0.022 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.743:0.017,0.224,0.76 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.692:0.016,0.277,0.707 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.707:0.021,0.251,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.518:0.505,0.471,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.006,0.134,0.86 0|0:0:1,0,0 1|1:1.792:0.013,0.183,0.804 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.944:0.114,0.829,0.057 1|1:2:0,0,1 1|0:0.87:0.213,0.705,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.663:0.029,0.279,0.692 1|1:1.726:0.019,0.236,0.745 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.319:0.692,0.297,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.722:0.018,0.241,0.741 1|1:1.703:0.029,0.239,0.732 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.763:0.019,0.198,0.782 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.544:0.052,0.352,0.596 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.536:0.055,0.355,0.591 1|1:1.59:0.041,0.328,0.631 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.745:0.016,0.224,0.76 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.68:0.027,0.265,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.063:0.185,0.567,0.248 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.556:0.032,0.379,0.588 1|1:1.937:0.003,0.056,0.94 0|0:0:1,0,0 0|1:1.409:0.088,0.416,0.497 0|0:0:1,0,0 1|1:1.589:0.043,0.325,0.632 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.489:0.086,0.339,0.575 1|1:1.56:0.047,0.346,0.607 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.454:0.071,0.405,0.524 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.52:0.06,0.359,0.58 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.953,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.315:0.719,0.248,0.033 0|0:0:1,0,0 1|0:0.732:0.349,0.57,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.792:0.013,0.183,0.804 1|1:1.792:0.013,0.183,0.804 1|1:2:0,0,1 1|1:1.796:0.016,0.173,0.812 1|1:1.792:0.013,0.183,0.804 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.017,0.242,0.74 1|1:2:0,0,1 1|1:1.576:0.049,0.327,0.624 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.019,0.183,0.798 1|1:1.695:0.035,0.236,0.73 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.488:0.081,0.349,0.569 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.299:0.705,0.29,0.004 1|1:2:0,0,1 +3 15663019 SNP-3.15661665. C A . PASS AR2=0.998;DR2=0.999;AF=0.445 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.625:0,0.374,0.626 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15665019 SNP-3.15663665. C A . PASS AR2=1;DR2=1;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.001:0,0.999,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.053:0.947,0.053,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15665154 SNP-3.15663800. C A . PASS AR2=1;DR2=1;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15667170 SNP-3.15665816. C A . PASS AR2=0.992;DR2=0.994;AF=0.431 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|0:1.004:0.009,0.978,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.154:0.847,0.151,0.002 1|0:1.357:0.107,0.43,0.463 1|0:1:0,1,0 1|1:1.563:0.037,0.364,0.6 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15669666 SNP-3.15668312. C A . PASS AR2=0.999;DR2=0.999;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.059,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.91:0.003,0.085,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15670928 SNP-3.15669574. C A . PASS AR2=0.986;DR2=0.988;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.951 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.074,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.89,0.108,0.002 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.399:0.601,0.399,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.896,0.097,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.844,0.146,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.171:0.831,0.167,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.062:0.939,0.059,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.125:0.879,0.118,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.763,0.221,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.852,0.139,0.009 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.074:0.93,0.065,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0.009:0.991,0.009,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 1|1:2:0,0,1 0|0:0.027:0.973,0.026,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.178:0.831,0.159,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.806,0.181,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15671045 SNP-3.15669691. C A . PASS AR2=0.977;DR2=0.984;AF=0.279 GT:DS:GP 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.596:0.073,0.259,0.669 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.342:0.083,0.492,0.425 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.009,0.312,0.678 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0,0.132,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.82:0.002,0.175,0.823 0|0:0:1,0,0 1|1:1.7:0.004,0.292,0.704 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 1|1:1.882:0,0.118,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.324:0.154,0.369,0.477 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.317:0.096,0.491,0.413 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.001,0.063,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.445:0.096,0.362,0.541 0|0:0:1,0,0 +3 15672470 SNP-3.15671116. C A . PASS AR2=1;DR2=1;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15674475 SNP-3.15673121. C A . PASS AR2=0.999;DR2=0.999;AF=0.303 GT:DS:GP 0|0:0:1,0,0 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 +3 15675533 SNP-3.15674179. C A . PASS AR2=0.993;DR2=0.994;AF=0.297 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|1:1:0,1,0 1|1:1.977:0.001,0.022,0.977 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0,0.062,0.938 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.857:0.003,0.137,0.86 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.577:0.001,0.422,0.577 0|0:0:1,0,0 1|1:1.883:0.003,0.111,0.886 1|1:1.885:0.003,0.108,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.955:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.053,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.893:0.002,0.103,0.895 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.003,0.097,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15678560 SNP-3.15677206. A G . PASS AR2=0.879;DR2=0.916;AF=0.298 GT:DS:GP 0|0:0.612:0.49,0.408,0.102 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.017:0.191,0.6,0.208 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.776:0.39,0.444,0.166 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.398:0.663,0.277,0.061 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.47:0.568,0.394,0.038 1|1:1.577:0.056,0.312,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.364:0.662,0.312,0.026 0|0:0.331:0.669,0.331,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.274:0.157,0.411,0.432 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.19:0.148,0.514,0.338 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.187:0.818,0.177,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.8,0.195,0.005 0|0:0:1,0,0 0|1:0.782:0.392,0.435,0.173 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.861,0.137,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.784:0.314,0.587,0.099 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.605:0.003,0.389,0.608 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.444:0.569,0.418,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.449:0.613,0.325,0.062 1|0:0.582:0.484,0.45,0.066 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.509:0.547,0.396,0.056 0|0:0.21:0.802,0.186,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.619:0.511,0.359,0.13 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.45:0.076,0.397,0.527 1|0:0.621:0.477,0.424,0.099 0|0:0.541:0.537,0.386,0.077 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.568:0.521,0.39,0.089 0|1:0.611:0.446,0.497,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.849:0.359,0.433,0.208 1|1:2:0,0,1 0|0:0.19:0.81,0.19,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.585:0.5,0.414,0.085 0|0:0:1,0,0 0|0:0.466:0.579,0.376,0.045 1|0:1.356:0.092,0.459,0.449 0|1:0.543:0.521,0.414,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.626:0.401,0.571,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.677:0.421,0.481,0.098 0|0:0:1,0,0 1|0:0.813:0.253,0.681,0.066 0|0:0:1,0,0 1|1:1.774:0.025,0.176,0.799 1|1:1.601:0.048,0.302,0.649 1|1:1.308:0.145,0.402,0.453 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.819,0.161,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.619:0.484,0.413,0.103 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.207:0.176,0.441,0.383 0|0:0.181:0.86,0.099,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.532:0.524,0.42,0.056 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.32:0.742,0.196,0.062 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.64,0.344,0.016 1|1:2:0,0,1 1|0:0.625:0.441,0.493,0.066 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15678743 SNP-3.15677389. C A . PASS AR2=0.995;DR2=0.996;AF=0.281 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.837:0.005,0.152,0.843 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.775:0.013,0.198,0.789 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.845:0.006,0.143,0.851 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.007,0.151,0.843 0|0:0:1,0,0 +3 15679056 SNP-3.15677702. C A . PASS AR2=0.986;DR2=0.988;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.229:0.785,0.201,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.242:0.773,0.212,0.015 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.282:0.74,0.239,0.022 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.326:0.701,0.271,0.027 1|0:1:0,1,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0.318:0.707,0.267,0.025 1|0:1:0,1,0 0|0:0.104:0.897,0.103,0.001 0|0:0.217:0.794,0.194,0.011 0|0:0:1,0,0 0|0:0.207:0.801,0.192,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0.016:0.984,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.155:0.855,0.136,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.14:0.862,0.136,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.125:0.881,0.114,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15680226 SNP-3.15678872. C A . PASS AR2=0.994;DR2=0.995;AF=0.437 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.088:0.006,0.9,0.094 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.887,0.111,0.002 0|1:1:0,1,0 0|0:0.074:0.928,0.07,0.002 0|0:0.084:0.918,0.08,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.239:0.125,0.511,0.364 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.849:0.004,0.143,0.853 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15683355 SNP-3.15682001. C A . PASS AR2=0.989;DR2=0.99;AF=0.454 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 0|0:0.023:0.977,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.163:0.848,0.141,0.011 1|1:1.829:0.006,0.158,0.835 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0.075:0.927,0.071,0.002 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.09,0.907 0|0:0:1,0,0 0|0:0.121:0.88,0.12,0.001 1|1:2:0,0,1 0|0:0.16:0.853,0.133,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.146:0.867,0.12,0.013 0|0:0:1,0,0 0|0:0.26:0.763,0.214,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.147:0.865,0.122,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.011:0.989,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.865,0.131,0.004 1|1:2:0,0,1 0|0:0.115:0.886,0.113,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.868,0.13,0.002 0|0:0.163:0.839,0.159,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.947,0.051,0.002 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.848,0.15,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.006,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15684816 SNP-3.15683462. A G . PASS AR2=0.979;DR2=0.982;AF=0.199 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.872,0.121,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.226:0.787,0.199,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.186:0.821,0.171,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.143,0.006 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.18:0.827,0.166,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.746:0.271,0.711,0.017 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.342:0.689,0.281,0.031 0|0:0.081:0.921,0.077,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.094:0.909,0.089,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.167:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.223:0.787,0.203,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.806,0.191,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.876,0.116,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.152:0.854,0.141,0.005 0|1:1:0,1,0 0|0:0:1,0,0 +3 15685034 SNP-3.15683680. C A . PASS AR2=0.989;DR2=0.992;AF=0.427 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0.324:0.678,0.32,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.853,0.136,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.919:0.087,0.906,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.978:0.032,0.958,0.01 0|1:0.936:0.127,0.811,0.062 1|1:1.587:0.01,0.393,0.597 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.764:0.242,0.752,0.006 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.454:0.002,0.543,0.456 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.891:0.001,0.107,0.892 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.141:0.868,0.122,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.989 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0.001,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.098:0.908,0.087,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 +3 15685344 SNP-3.15683990. C A . PASS AR2=0.99;DR2=0.993;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.762:0.427,0.383,0.19 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.943,0.054,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.894,0.103,0.003 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.924:0.109,0.858,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.972,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.155:0.184,0.477,0.339 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 +3 15686242 SNP-3.15684888. C A . PASS AR2=0.997;DR2=0.998;AF=0.296 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.766:0.001,0.232,0.767 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.265:0,0.734,0.266 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15695215 SNP-3.15693861. C A . PASS AR2=0.993;DR2=0.995;AF=0.483 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.254:0.754,0.238,0.008 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.012,0.103,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0.013,0.171,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.297:0.189,0.325,0.486 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15695269 SNP-3.15693915. C A . PASS AR2=0.992;DR2=0.995;AF=0.494 GT:DS:GP 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.208:0.796,0.2,0.004 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.137:0.865,0.132,0.002 1|1:1.826:0,0.173,0.827 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1.305:0.061,0.573,0.366 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.653:0.352,0.643,0.005 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.009:0,0.991,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:0.503:0.497,0.503,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15696808 SNP-3.15695454. A G . PASS AR2=0.98;DR2=0.985;AF=0.41 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.724:0.427,0.422,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.802,0.166,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.783:0.369,0.478,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.827:0.173,0.827,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.719,0.276,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.08:0.921,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.538:0.048,0.366,0.586 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.631:0.053,0.263,0.684 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.917:0.283,0.516,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.761:0.375,0.488,0.137 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15702651 SNP-3.15701297. C A . PASS AR2=0.994;DR2=0.995;AF=0.482 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.698:0,0.301,0.698 0|0:0:1,0,0 0|0:0.167:0.833,0.167,0 1|1:2:0,0,1 1|1:1.907:0.001,0.09,0.908 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.002,0.059,0.939 1|1:1.958:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.934:0.002,0.062,0.936 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.676,0.324,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.994:0.007,0.992,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.873:0.004,0.119,0.877 1|1:2:0,0,1 1|1:1.916:0.003,0.078,0.919 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.003,0.078,0.919 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15703264 SNP-3.15701910. A G . PASS AR2=0.946;DR2=0.961;AF=0.242 GT:DS:GP 0|0:0.278:0.743,0.236,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.125,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.317:0.712,0.258,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.009,0.146,0.845 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.433:0.632,0.304,0.064 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.78,0.208,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 0|0:0.257:0.757,0.229,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.083:0.288,0.341,0.371 0|0:0:1,0,0 0|0:0.219:0.794,0.194,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.792,0.18,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.312:0.712,0.263,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.262:0.776,0.187,0.038 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.333:0.696,0.276,0.028 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0.346:0.676,0.301,0.022 0|0:0:1,0,0 0|0:0.317:0.709,0.266,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.199:0.827,0.146,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.355:0.677,0.29,0.033 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.328:0.698,0.277,0.025 0|1:1:0,1,0 0|0:0.319:0.704,0.273,0.023 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.306:0.718,0.257,0.024 1|0:1:0,1,0 0|0:0.287:0.733,0.247,0.02 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15704365 SNP-3.15703011. C A . PASS AR2=0.985;DR2=0.99;AF=0.271 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.562:0.049,0.339,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.458:0.083,0.376,0.541 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.898:0.003,0.097,0.9 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.943 1|1:2:0,0,1 1|1:1.78:0.013,0.195,0.793 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.444:0.018,0.52,0.462 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.859:0.005,0.132,0.863 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.646:0.036,0.282,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15705364 SNP-3.15704010. C A . PASS AR2=0.965;DR2=0.971;AF=0.458 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.746:0,0.254,0.746 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.009,0.132,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.026,0.171,0.803 0|0:0.275:0.743,0.24,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.322:0.702,0.275,0.024 0|0:0.251:0.765,0.218,0.017 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.763,0.226,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.221:0.79,0.199,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.808,0.185,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.388:0.642,0.328,0.03 0|0:0.205:0.807,0.182,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.865,0.132,0.003 0|0:0.165:0.84,0.155,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.853,0.143,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.868,0.126,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.175:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 1|1:2:0,0,1 0|0:0.123:0.882,0.112,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.271:0.748,0.233,0.019 1|1:2:0,0,1 0|0:0.265:0.756,0.224,0.02 1|1:2:0,0,1 1|1:1.927:0.001,0.07,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.089:0.915,0.082,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.781,0.203,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.214:0.799,0.187,0.013 0|0:0:1,0,0 0|0:0.153:0.856,0.135,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.439:0.588,0.384,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.003,0.126,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.727:0.008,0.258,0.735 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.3:0.721,0.259,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.103,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.113:0.889,0.11,0.002 0|0:0.285:0.733,0.249,0.018 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.371:0.657,0.315,0.028 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.167:0.839,0.155,0.006 0|0:0.16:0.849,0.142,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.064,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.943,0.052,0.005 0|0:0.052:0.952,0.045,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.354:0.676,0.295,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15707329 SNP-3.15705975. C A . PASS AR2=0.978;DR2=0.981;AF=0.451 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.176:0.833,0.159,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.599:0.137,0.127,0.736 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.838,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.242:0.772,0.214,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.843,0.15,0.006 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.294:0.73,0.247,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0.214:0.798,0.19,0.012 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.845,0.149,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.092:0.911,0.085,0.003 1|1:2:0,0,1 1|0:1.036:0,0.964,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.141:0.865,0.129,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.234:0.78,0.206,0.014 0|0:0:1,0,0 0|0:0.166:0.841,0.151,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.239:0.774,0.213,0.013 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.843,0.152,0.006 0|0:0.326:0.706,0.262,0.032 0|0:0.043:0.959,0.039,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.836,0.161,0.003 0|0:0:1,0,0 0|0:0.168:0.84,0.153,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.248:0.766,0.219,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.221:0.792,0.194,0.013 0|0:0.071:0.932,0.065,0.003 0|0:0.327:0.706,0.262,0.032 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.969,0.029,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15710789 SNP-3.15709435. C A . PASS AR2=0.999;DR2=0.999;AF=0.42 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.001,0.156,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0.001,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15711523 SNP-3.15710169. C A . PASS AR2=0.986;DR2=0.99;AF=0.389 GT:DS:GP 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.361:0.081,0.478,0.441 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.898:0.001,0.1,0.899 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.899:0.003,0.096,0.902 1|0:0.698:0.41,0.481,0.108 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.454:0.598,0.349,0.052 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.454:0.598,0.349,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.454:0.598,0.349,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.963,0.035,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15712612 SNP-3.15711258. C A . PASS AR2=1;DR2=1;AF=0.426 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.001:0,0.999,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15712766 SNP-3.15711412. C A . PASS AR2=0.98;DR2=0.984;AF=0.284 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.006,0.121,0.874 1|1:1.609:0.019,0.352,0.628 0|0:0.073:0.929,0.07,0.001 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.154:0.851,0.144,0.005 0|0:0.154:0.851,0.144,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.858:0.005,0.133,0.862 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 0|1:0.823:0.177,0.823,0 1|1:1.585:0.019,0.376,0.604 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.675:0.014,0.298,0.689 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.89:0.146,0.819,0.036 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0 1|1:1.609:0.002,0.387,0.611 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.948,0.05,0.001 0|0:0.143:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0.069:0.931,0.069,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.115,0.004 0|0:0:1,0,0 0|0:0.079:0.924,0.073,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.008,0.155,0.837 0|0:0:1,0,0 +3 15714336 SNP-3.15712982. C A . PASS AR2=1;DR2=1;AF=0.288 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.998:0.002,0.998,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15716353 SNP-3.15714999. C A . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15717090 SNP-3.15715736. C A . PASS AR2=0.997;DR2=0.998;AF=0.455 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.157:0.854,0.135,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.094:0.91,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.816,0.182,0.002 0|0:0.078:0.924,0.075,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15718646 SNP-3.15717292. C A . PASS AR2=0.999;DR2=0.999;AF=0.448 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.888,0.108,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.133:0.874,0.119,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15719030 SNP-3.15717676. C A . PASS AR2=1;DR2=1;AF=0.428 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15720172 SNP-3.15718818. A G . PASS AR2=0.99;DR2=0.992;AF=0.29 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.508:0.008,0.476,0.516 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.202:0.815,0.168,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.101,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.031:0.011,0.947,0.042 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.595:0.405,0.595,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.149:0.851,0.149,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15720536 SNP-3.15719182. A G . PASS AR2=0.98;DR2=0.985;AF=0.256 GT:DS:GP 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|1:0.568:0.465,0.502,0.033 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.039,0.96 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.154:0.853,0.14,0.007 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.339:0.698,0.266,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.002,0.166,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.854,0.141,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.77,0.214,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.905,0.091,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.883,0.109,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.229:0.784,0.202,0.013 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.443:0.038,0.481,0.481 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.808,0.186,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.87,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15720660 SNP-3.15719306. A G . PASS AR2=0.998;DR2=0.999;AF=0.495 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.635:0.366,0.634,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.009:0.006,0.979,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15720901 SNP-3.15719547. C A . PASS AR2=0.998;DR2=0.999;AF=0.285 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.634:0,0.366,0.634 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15720951 SNP-3.15719597. A G . PASS AR2=0.983;DR2=0.986;AF=0.291 GT:DS:GP 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.854:0.006,0.134,0.86 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.49:0.058,0.394,0.548 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.004,0.048,0.948 0|1:0.618:0.407,0.568,0.025 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.08:0.923,0.075,0.003 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0.067:0.934,0.065,0.001 0|0:0.041:0.959,0.04,0 0|0:0.055:0.946,0.053,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.05,0.948 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.037:0,0.963,0.037 0|0:0:1,0,0 0|0:0.086:0.917,0.08,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.968:0.04,0.953,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.49:0,0.51,0.49 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0.001,0.023,0.976 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.8,0.192,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.949,0.05,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.755,0.238,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15722768 SNP-3.15721414. A G . PASS AR2=0.97;DR2=0.982;AF=0.485 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.63:0.469,0.432,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.843:0.306,0.544,0.15 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.631:0.469,0.432,0.1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.44:0.025,0.51,0.465 0|0:0:1,0,0 0|0:0.54:0.541,0.379,0.08 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.643:0.46,0.436,0.104 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.947 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.71:0.404,0.483,0.113 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.643:0.46,0.436,0.104 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.633:0.467,0.432,0.1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.643:0.46,0.436,0.104 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15722844 SNP-3.15721490. A G . PASS AR2=0.991;DR2=0.992;AF=0.254 GT:DS:GP 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.038:0.962,0.038,0 0|0:0.045:0.955,0.045,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0.09:0.912,0.086,0.002 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.933,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.075:0.927,0.072,0.002 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.02:0,0.98,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.083:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.628:0.079,0.213,0.707 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15723092 SNP-3.15721738. C A . PASS AR2=0.993;DR2=0.994;AF=0.448 GT:DS:GP 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0.052:0.948,0.051,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.866,0.128,0.006 0|0:0.119:0.887,0.107,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.674:0.002,0.321,0.676 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.133:0.872,0.122,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.136:0.866,0.131,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.889,0.111,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.004:0,0.996,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.028,0.001 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.953,0.046,0.001 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.318:0.683,0.316,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15725488 SNP-3.15724134. C A . PASS AR2=1;DR2=1;AF=0.302 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15726847 SNP-3.15725493. C A . PASS AR2=1;DR2=1;AF=0.444 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15729319 SNP-3.15727965. C A . PASS AR2=1;DR2=1;AF=0.43 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15729443 SNP-3.15728089. C A . PASS AR2=1;DR2=1;AF=0.296 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15730077 SNP-3.15728723. C A . PASS AR2=0.997;DR2=0.998;AF=0.427 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.967:0.001,0.03,0.968 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.972:0.001,0.026,0.973 1|1:1.695:0.019,0.268,0.714 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.818:0.01,0.162,0.828 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15730296 SNP-3.15728942. C A . PASS AR2=0.997;DR2=0.998;AF=0.441 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.001,0.066,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.038,0.962 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.002,0.09,0.908 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 1|1:1.895:0.001,0.102,0.897 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.003,0.103,0.893 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15732998 SNP-3.15731644. C A . PASS AR2=0.998;DR2=0.998;AF=0.413 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.311:0.086,0.516,0.398 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15733340 SNP-3.15731986. C A . PASS AR2=0.998;DR2=0.998;AF=0.431 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.055:0.946,0.052,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15736711 SNP-3.15735357. C A . PASS AR2=1;DR2=1;AF=0.268 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15740027 SNP-3.15738673. C A . PASS AR2=0.983;DR2=0.987;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.131:0.873,0.122,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.23:0.786,0.198,0.016 0|0:0:1,0,0 0|0:0.079:0.923,0.074,0.002 0|1:1:0,1,0 0|0:0.536:0.492,0.48,0.028 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.093:0.909,0.088,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.808,0.176,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.791,0.203,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0.013:0.987,0.013,0 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.113:0.889,0.108,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.285:0.739,0.237,0.024 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.002 0|1:0.471:0.539,0.45,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 0|0:0.124:0.881,0.115,0.004 0|0:0.107:0.897,0.1,0.004 1|1:2:0,0,1 0|0:0:1,0,0 +3 15741078 SNP-3.15739724. C A . PASS AR2=0.997;DR2=0.997;AF=0.277 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0.036:0.964,0.035,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0.129:0.872,0.128,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0,0.047,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.048,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15742728 SNP-3.15741374. C A . PASS AR2=0.997;DR2=0.998;AF=0.442 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.95,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 1|0:0.717:0.295,0.693,0.012 0|0:0.025:0.976,0.024,0 1|1:1.945:0.003,0.05,0.947 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15743490 SNP-3.15742136. C A . PASS AR2=0.999;DR2=0.999;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.069:0.034,0.863,0.103 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.002,0.201,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15744367 SNP-3.15743013. C A . PASS AR2=0.991;DR2=0.992;AF=0.469 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.841,0.15,0.01 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.179:0.83,0.16,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.195:0.812,0.181,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.146:0.002,0.851,0.148 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.841,0.149,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.21:0.803,0.183,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.907,0.091,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.169:0.838,0.156,0.007 1|1:2:0,0,1 0|0:0.171:0.838,0.152,0.01 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.08:0.921,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.828,0.165,0.007 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.046:0.954,0.045,0.001 +3 15745506 SNP-3.15744152. C A . PASS AR2=0.985;DR2=0.988;AF=0.463 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.144:0.861,0.134,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.807:0,0.192,0.808 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.826,0.171,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.612:0.414,0.559,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.92,0.079,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.815,0.163,0.022 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.348:0,0.652,0.348 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.136:0.868,0.127,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.209:0.799,0.192,0.009 0|0:0.193:0.816,0.175,0.009 0|0:0:1,0,0 0|0:0.541:0.498,0.463,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.161:0.844,0.152,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.081:0.919,0.08,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.155:0.85,0.145,0.005 0|0:0:1,0,0 0|0:0.092:0.91,0.089,0.001 0|0:0.146:0.858,0.137,0.004 0|0:0.046:0.955,0.044,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15748572 SNP-3.15747218. C A . PASS AR2=1;DR2=1;AF=0.263 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15750549 SNP-3.15749195. C A . PASS AR2=1;DR2=1;AF=0.27 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15751111 SNP-3.15749757. C A . PASS AR2=0.999;DR2=0.999;AF=0.277 GT:DS:GP 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15751427 SNP-3.15750073. C A . PASS AR2=1;DR2=1;AF=0.27 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15762346 SNP-3.15760992. C A . PASS AR2=0.988;DR2=0.99;AF=0.46 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.892,0.104,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.885,0.112,0.003 0|0:0.072:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0.092:0.91,0.088,0.002 0|1:1.18:0,0.82,0.18 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.159:0.848,0.145,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.133:0.871,0.125,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.263:0.747,0.243,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0.4:0.612,0.376,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.081,0.002 0|0:0:1,0,0 1|1:1.714:0,0.286,0.714 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.89,0.106,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15763066 SNP-3.15761712. C A . PASS AR2=1;DR2=1;AF=0.432 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15764011 SNP-3.15762657. A G . PASS AR2=0.981;DR2=0.984;AF=0.229 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.391:0.634,0.34,0.026 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.223:0.789,0.199,0.012 0|0:0.13:0.874,0.121,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.104:0.899,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.862,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.141:0.864,0.131,0.005 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.05:0.95,0.05,0 0|0:0.173:0.833,0.161,0.006 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.822,0.174,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.848,0.147,0.005 0|1:1.149:0.003,0.845,0.152 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.256:0.761,0.222,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.089:0.912,0.088,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.184:0.824,0.168,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.888,0.111,0 0|0:0:1,0,0 +3 15766609 SNP-3.15765255. C A . PASS AR2=0.957;DR2=0.969;AF=0.398 GT:DS:GP 0|0:0:1,0,0 1|1:1.785:0.015,0.185,0.8 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.029,0.271,0.7 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.646:0.017,0.32,0.663 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.002,0.127,0.87 1|1:2:0,0,1 1|1:1.92:0.001,0.077,0.922 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.921:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0,0.129,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.431:0.079,0.411,0.51 1|1:1.778:0.014,0.194,0.792 0|0:0:1,0,0 0|1:1.443:0.074,0.41,0.516 1|0:1.483:0.058,0.401,0.541 1|1:1.447:0.075,0.403,0.522 1|1:1.557:0.038,0.366,0.595 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.068,0.931 1|1:1.613:0.032,0.324,0.644 1|1:1.632:0.032,0.303,0.664 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.37:0.089,0.452,0.459 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.724:0.006,0.264,0.73 0|0:0.016:0.984,0.016,0 1|1:1.577:0.038,0.347,0.615 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.651:0.051,0.247,0.702 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.774:0.01,0.206,0.784 1|1:1.921:0,0.079,0.921 0|0:0:1,0,0 1|1:1.891:0.001,0.107,0.892 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.847:0.006,0.14,0.853 1|1:1.787:0.009,0.196,0.796 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.001,0.073,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.767:0.01,0.213,0.777 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.52:0.052,0.375,0.573 1|1:2:0,0,1 1|1:1.856:0.004,0.137,0.859 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.777:0.009,0.205,0.786 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:1.828:0.005,0.162,0.833 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.033,0.966 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.001,0.07,0.929 1|1:1.676:0.03,0.263,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15766800 SNP-3.15765446. C A . PASS AR2=0.929;DR2=0.95;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:1.469:0.067,0.396,0.537 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.184:0.13,0.555,0.314 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.396:0.091,0.422,0.487 1|0:1.357:0.1,0.443,0.457 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.492:0.063,0.382,0.555 1|0:1.536:0.069,0.327,0.605 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.447:0.049,0.455,0.496 1|1:1.778:0.012,0.198,0.79 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.319:0.121,0.439,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.413:0.078,0.431,0.491 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.826:0,0.174,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.212:0.152,0.485,0.364 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.232:0.146,0.476,0.378 0|1:1:0,1,0 1|0:1.312:0.107,0.475,0.419 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.01,0.183,0.807 0|0:0:1,0,0 1|0:1.243:0.12,0.517,0.363 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.432:0.086,0.396,0.518 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.498:0.051,0.401,0.548 0|0:0:1,0,0 1|1:1.377:0.094,0.434,0.472 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.764:0.016,0.204,0.78 0|0:0:1,0,0 1|1:1.771:0.007,0.215,0.778 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.887:0,0.113,0.887 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.003,0.11,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.002,0.097,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.002,0.033,0.966 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.643:0.027,0.304,0.67 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.402:0.098,0.401,0.501 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.432:0.076,0.416,0.508 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.63:0.032,0.306,0.662 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.14:0.194,0.472,0.334 1|1:1.579:0.033,0.355,0.612 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.704:0.013,0.269,0.717 1|1:1.545:0.065,0.324,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.349:0.104,0.442,0.453 0|0:0:1,0,0 +3 15767218 SNP-3.15765864. C A . PASS AR2=0.982;DR2=0.986;AF=0.417 GT:DS:GP 0|0:0:1,0,0 1|1:1.764:0.011,0.214,0.775 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.872:0.005,0.119,0.876 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.004,0.124,0.872 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.014,0.25,0.736 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.876:0.134,0.856,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.778:0.013,0.197,0.791 1|1:1.68:0.013,0.294,0.693 0|0:0:1,0,0 1|1:1.742:0.017,0.224,0.759 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.8:0.009,0.181,0.81 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.792:0.012,0.184,0.804 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.477:0.032,0.458,0.509 1|1:1.787:0.011,0.191,0.798 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|0:1:0,1,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.872:0.004,0.119,0.876 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.741:0.012,0.234,0.753 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.862:0.005,0.129,0.867 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.007,0.123,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.006,0.108,0.886 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.006,0.134,0.86 0|0:0:1,0,0 +3 15769262 SNP-3.15767908. C A . PASS AR2=0.996;DR2=0.998;AF=0.421 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.777:0.008,0.206,0.785 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.458:0.084,0.374,0.542 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15769501 SNP-3.15768147. A G . PASS AR2=0.984;DR2=0.987;AF=0.498 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.672:0.027,0.274,0.699 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.827:0.006,0.162,0.832 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.474:0.048,0.43,0.522 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.002,0.095,0.903 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:1.801:0.011,0.177,0.812 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.891:0.004,0.101,0.895 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.921:0.003,0.074,0.923 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.709:0.017,0.257,0.726 1|1:2:0,0,1 1|1:1.819:0.011,0.16,0.83 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.685:0.024,0.266,0.71 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.927:0.002,0.07,0.928 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.008,0.17,0.822 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.846:0.008,0.138,0.854 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.012,0.249,0.738 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.004,0.047,0.949 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.05,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.826:0.005,0.163,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15770793 SNP-3.15769439. A G . PASS AR2=0.909;DR2=0.936;AF=0.416 GT:DS:GP 1|1:1.383:0.089,0.438,0.473 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.453:0.081,0.385,0.534 1|1:1.295:0.144,0.416,0.44 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.596:0.03,0.345,0.626 0|1:1:0,1,0 1|1:1.404:0.076,0.444,0.48 0|1:1.278:0.131,0.459,0.409 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.346:0.104,0.446,0.45 1|1:1.459:0.058,0.425,0.517 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.387:0.091,0.431,0.478 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.172:0.152,0.523,0.325 0|0:0:1,0,0 0|1:1.244:0.133,0.489,0.378 0|0:0:1,0,0 1|1:1.287:0.123,0.467,0.41 1|1:2:0,0,1 0|1:1.44:0.056,0.448,0.496 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.123:0.877,0.123,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.69:0.032,0.246,0.722 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.316:0.117,0.45,0.433 1|1:1.234:0.15,0.466,0.384 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.451:0.081,0.387,0.532 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.521:0.054,0.372,0.575 0|0:0:1,0,0 1|1:1.419:0.086,0.409,0.505 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.424:0.127,0.322,0.551 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.16:0.174,0.492,0.334 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0.013,0.167,0.82 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.492:0.092,0.325,0.583 1|1:1.614:0.046,0.294,0.66 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.284:0.143,0.429,0.428 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.011:0.254,0.482,0.265 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.236:0.097,0.57,0.333 1|1:1.644:0.031,0.294,0.675 1|1:1.497:0.058,0.387,0.555 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 15771714 SNP-3.15770360. C A . PASS AR2=0.992;DR2=0.994;AF=0.45 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.132:0.001,0.867,0.133 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.118:0.887,0.108,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.362:0.65,0.338,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.14:0.008,0.844,0.148 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.983:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.683:0.343,0.631,0.026 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0.306:0.7,0.294,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.031,0 0|0:0.085:0.917,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15773322 SNP-3.15771968. C A . PASS AR2=0.986;DR2=0.988;AF=0.407 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.742:0.011,0.236,0.753 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.989:0,0.01,0.989 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|1:1.014:0.002,0.982,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:1.936:0,0.064,0.936 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.745:0.259,0.736,0.004 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.739:0.019,0.223,0.758 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.654:0.025,0.297,0.679 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:1.854:0.005,0.137,0.859 0|0:0:1,0,0 1|1:1.831:0.006,0.158,0.837 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.683:0.017,0.282,0.701 0|0:0:1,0,0 1|1:1.754:0.021,0.205,0.774 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.787:0.001,0.212,0.787 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0,0.042,0.958 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.778:0.018,0.185,0.797 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.842:0.009,0.141,0.851 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.006,0.09,0.904 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.007,0.133,0.86 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15775573 SNP-3.15774219. C A . PASS AR2=0.994;DR2=0.995;AF=0.282 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.858:0.002,0.138,0.86 1|0:0.966:0.045,0.943,0.012 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.833:0.004,0.158,0.837 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.003,0.085,0.912 1|1:1.654:0.029,0.288,0.683 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 0|0:0:1,0,0 +3 15776058 SNP-3.15774704. C A . PASS AR2=0.999;DR2=0.999;AF=0.412 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.866:0.002,0.13,0.868 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15777218 SNP-3.15775864. C A . PASS AR2=0.999;DR2=0.999;AF=0.43 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.066:0.934,0.065,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.928:0.004,0.065,0.932 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.004,0.046,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.075:0.928,0.069,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15779971 SNP-3.15778617. C A . PASS AR2=0.994;DR2=0.996;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.958:0.112,0.819,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.325:0.676,0.323,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.341:0.659,0.341,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.437:0.565,0.434,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15780788 SNP-3.15779434. C A . PASS AR2=0.993;DR2=0.994;AF=0.464 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.946,0.053,0.001 1|1:1.716:0.046,0.193,0.762 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.232:0.775,0.218,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.886:0,0.114,0.886 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.909,0.09,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0,0.18,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.105:0.898,0.098,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.927,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.947,0.053,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15782589 SNP-3.15781235. C A . PASS AR2=0.973;DR2=0.977;AF=0.439 GT:DS:GP 0|0:0.181:0.822,0.174,0.004 1|0:1:0,1,0 0|0:0.071:0.93,0.069,0.001 0|0:0.038:0.963,0.037,0 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.907,0.091,0.001 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.079:0.922,0.077,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.001 0|0:0.164:0.842,0.152,0.006 0|0:0.193:0.817,0.173,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.099:0.903,0.095,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 1|1:1.291:0.136,0.438,0.427 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.755,0.234,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.865:0.004,0.126,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.362:0.055,0.529,0.417 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.682:0.02,0.279,0.701 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.197:0.17,0.463,0.367 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.174:0.178,0.47,0.352 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.174:0.178,0.47,0.352 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.174:0.178,0.47,0.352 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.053,0.001 0|0:0.109:0.894,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.501:0.055,0.388,0.556 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15782853 SNP-3.15781499. C A . PASS AR2=0.988;DR2=0.99;AF=0.403 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.403:0.057,0.484,0.459 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.575:0.024,0.376,0.6 1|1:2:0,0,1 1|1:1.593:0.012,0.383,0.605 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.052:0.948,0.051,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.129:0.086,0.698,0.216 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.052:0.949,0.049,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.049,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.049,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.995:0.156,0.692,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15784197 SNP-3.15782843. C A . PASS AR2=0.992;DR2=0.994;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.953,0.047,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|1:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.767:0.014,0.206,0.781 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.004,0.128,0.868 1|1:1.937:0.001,0.062,0.938 1|0:1:0,1,0 1|1:1.749:0.011,0.23,0.759 1|1:1.656:0.035,0.274,0.691 0|1:1:0,1,0 1|1:1.867:0.001,0.13,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0.071:0.93,0.07,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15792724 SNP-3.15791370. C A . PASS AR2=0.996;DR2=0.996;AF=0.303 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.834:0.006,0.153,0.84 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.139:0.126,0.61,0.265 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.876:0.005,0.114,0.881 0|0:0:1,0,0 +3 15794165 SNP-3.15792811. C A . PASS AR2=1;DR2=1;AF=0.45 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 1|1:2:0,0,1 0|0:0.051:0.949,0.051,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15794967 SNP-3.15793613. C A . PASS AR2=1;DR2=1;AF=0.44 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15795700 SNP-3.15794346. C A . PASS AR2=0.994;DR2=0.995;AF=0.42 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.009,0.174,0.816 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.854:0.008,0.129,0.863 1|0:1:0,1,0 1|1:1.895:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0.015,0.217,0.767 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.892:0.004,0.1,0.896 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.046,0.299,0.655 0|0:0:1,0,0 +3 15795737 SNP-3.15794383. C A . PASS AR2=0.994;DR2=0.994;AF=0.432 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.004,0.123,0.873 0|0:0:1,0,0 1|1:1.958:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.039,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 1|1:1.908:0.003,0.086,0.911 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.857:0.152,0.839,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.753:0.019,0.209,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.002,0.073,0.925 1|1:1.949:0,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.945:0.001,0.054,0.946 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0,0.047,0.952 1|0:1:0,1,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.067,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.003,0.107,0.89 0|0:0:1,0,0 +3 15795753 SNP-3.15794399. C A . PASS AR2=0.993;DR2=0.994;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.126:0.879,0.117,0.004 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.114:0.888,0.109,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 1|1:1.564:0.012,0.413,0.575 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0,0.062,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.025,0.975 1|1:1.965:0,0.035,0.965 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.04,0.959 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.113:0.891,0.105,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.922:0.002,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15796375 SNP-3.15795021. C A . PASS AR2=0.984;DR2=0.987;AF=0.292 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.021:0.238,0.504,0.258 0|0:0:1,0,0 0|1:1.291:0.072,0.564,0.363 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.316:0.684,0.316,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.126:0.146,0.581,0.272 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.59:0.489,0.431,0.08 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.886:0.307,0.5,0.193 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.582:0.418,0.581,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15802277 SNP-3.15800923. C A . PASS AR2=0.989;DR2=0.99;AF=0.44 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.133:0.872,0.123,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.921:0.007,0.065,0.928 1|1:1.937:0.002,0.059,0.939 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0.007,0.168,0.825 1|1:2:0,0,1 1|1:1.891:0.004,0.101,0.895 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.136:0.869,0.126,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.136:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.748:0.037,0.177,0.785 1|1:2:0,0,1 1|1:1.919:0.003,0.074,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.772:0.013,0.202,0.785 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0.001,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.001,0.075,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.006,0.124,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.112:0.891,0.105,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15803454 SNP-3.15802100. C A . PASS AR2=0.989;DR2=0.992;AF=0.472 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.072:0.929,0.069,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.893,0.105,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.833:0.201,0.766,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.047:0,0.953,0.047 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.14:0.868,0.125,0.007 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.127:0,0.872,0.127 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.843,0.149,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.703:0.467,0.363,0.17 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.942,0.055,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.103:0.899,0.099,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.875,0.122,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.052:0.951,0.046,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15803470 SNP-3.15802116. C A . PASS AR2=0.937;DR2=0.952;AF=0.412 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.884,0.114,0.003 1|1:2:0,0,1 1|1:1.692:0.022,0.263,0.714 0|0:0:1,0,0 1|1:1.45:0.066,0.417,0.516 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.808,0.188,0.004 0|0:0.078:0.922,0.077,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.791,0.199,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.317:0.015,0.654,0.331 0|0:0:1,0,0 0|0:0.458:0.604,0.334,0.062 0|0:0:1,0,0 0|0:0.424:0.609,0.357,0.034 0|0:0:1,0,0 0|0:0.539:0.529,0.403,0.068 0|0:0.321:0.704,0.271,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.161:0.844,0.151,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.891,0.107,0.002 0|0:0:1,0,0 0|0:0.207:0.799,0.195,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.359:0.647,0.347,0.006 0|0:0.493:0.556,0.395,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.882,0.116,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.004,0.114,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.956:0.278,0.488,0.234 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.65:0.022,0.307,0.671 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0.001,0.028,0.971 0|0:0.173:0.837,0.153,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.791:0.009,0.191,0.8 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0.002,0.037,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.007,0.09,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.445:0.56,0.434,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.359:0.664,0.313,0.023 0|1:0.951:0.292,0.465,0.243 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.543:0.057,0.344,0.599 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.145:0.863,0.129,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.758,0.231,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.344:0.69,0.276,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.298:0.72,0.262,0.018 0|0:0.461:0.543,0.454,0.003 0|0:0.061:0.941,0.056,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.397:0.632,0.339,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.786:0.265,0.683,0.051 0|0:0:1,0,0 1|1:1.573:0.007,0.414,0.579 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.414:0.628,0.33,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.688:0.412,0.488,0.1 0|0:0.102:0.9,0.098,0.002 0|0:0:1,0,0 0|1:0.859:0.32,0.502,0.178 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.787,0.205,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.828,0.161,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.937:0.292,0.478,0.229 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.013,0.104,0.883 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15804561 SNP-3.15803207. C A . PASS AR2=1;DR2=1;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.001,0.068,0.932 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15804879 SNP-3.15803525. C A . PASS AR2=1;DR2=1;AF=0.457 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15808214 SNP-3.15806860. C A . PASS AR2=1;DR2=1;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15808331 SNP-3.15806977. C A . PASS AR2=0.971;DR2=0.976;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.921:0.314,0.451,0.235 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.147:0.868,0.116,0.015 1|0:0.711:0.358,0.574,0.069 0|0:0.302:0.699,0.3,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.015:0.044,0.897,0.059 1|0:0.684:0.438,0.44,0.122 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0.001,0.077,0.922 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0.002,0.062,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.25:0.751,0.247,0.002 1|0:1.361:0.025,0.588,0.386 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.051:0.259,0.431,0.31 0|0:0:1,0,0 1|1:1.807:0.004,0.185,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.006,0.125,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.907:0.105,0.883,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.807:0.008,0.178,0.814 0|0:0.02:0.98,0.02,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.929,0.07,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.002,0.056,0.942 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.828:0.342,0.489,0.169 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.505:0.496,0.504,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.002,0.05,0.948 0|0:0.39:0.671,0.268,0.061 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.003,0.072,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.816:0.033,0.118,0.849 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15808814 SNP-3.15807460. C A . PASS AR2=0.997;DR2=0.997;AF=0.422 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.027:0.202,0.568,0.23 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.914:0.088,0.91,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.002,0.062,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15809084 SNP-3.15807730. C A . PASS AR2=0.999;DR2=0.999;AF=0.438 GT:DS:GP 0|0:0.008:0.992,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 0|1:1:0,1,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0.001,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:1.972:0.001,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.005:0,0.995,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15809261 SNP-3.15807907. C A . PASS AR2=0.947;DR2=0.958;AF=0.422 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.586:0.043,0.328,0.629 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.663:0.029,0.278,0.693 1|1:1.796:0.019,0.167,0.814 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.606:0.034,0.327,0.639 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.232:0.782,0.205,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.746:0.018,0.218,0.764 1|1:2:0,0,1 1|1:1.711:0.021,0.247,0.732 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.754:0.015,0.216,0.769 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.543:0.051,0.356,0.593 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.227:0.785,0.202,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.244:0.769,0.217,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.825,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.625:0.039,0.298,0.664 1|1:2:0,0,1 0|1:1.027:0.265,0.442,0.293 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.921:0.001,0.076,0.923 0|0:0:1,0,0 1|0:1.336:0.094,0.476,0.43 0|0:0:1,0,0 0|1:1.124:0.21,0.456,0.334 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.565:0.044,0.348,0.608 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.632:0.031,0.307,0.662 1|1:1.707:0.019,0.255,0.726 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.037:0.963,0.036,0.001 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.088:0.914,0.084,0.002 1|0:1:0,1,0 1|1:1.548:0.055,0.342,0.603 1|1:2:0,0,1 1|1:1.832:0.007,0.153,0.84 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.738:0.017,0.227,0.756 0|0:0.235:0.779,0.208,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.018,0.226,0.756 0|0:0.17:0.838,0.155,0.007 0|0:0:1,0,0 0|0:0.217:0.795,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.572:0.046,0.336,0.618 0|0:0.286:0.734,0.246,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.007,0.153,0.839 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.017,0.227,0.756 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.017,0.227,0.756 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:1.912:0.002,0.085,0.914 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.69:0.025,0.261,0.714 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15809606 SNP-3.15808252. C A . PASS AR2=0.996;DR2=0.997;AF=0.443 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.093:0.92,0.068,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.497:0.565,0.373,0.062 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15809832 SNP-3.15808478. C A . PASS AR2=0.964;DR2=0.971;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.709:0.022,0.246,0.731 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.936:0.245,0.573,0.182 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.014,0.198,0.787 1|0:1.38:0.099,0.421,0.479 0|1:1.156:0.178,0.487,0.334 0|1:1.086:0.211,0.493,0.297 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.733:0.017,0.233,0.75 0|0:0.078:0.922,0.078,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.14:0.207,0.447,0.346 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.769:0.007,0.217,0.776 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.183:0.827,0.162,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.76:0.017,0.207,0.777 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.804:0.333,0.529,0.137 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.448:0.078,0.396,0.526 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.324:0.111,0.454,0.435 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.832:0.006,0.156,0.838 0|0:0:1,0,0 1|1:1.694:0.031,0.244,0.725 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.011,0.16,0.828 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.504:0.048,0.4,0.552 0|0:0:1,0,0 +3 15810017 SNP-3.15808663. C A . PASS AR2=1;DR2=1;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15812305 SNP-3.15810951. C A . PASS AR2=0.997;DR2=0.998;AF=0.449 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.852,0.139,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.222:0.796,0.186,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15813860 SNP-3.15812506. C A . PASS AR2=1;DR2=1;AF=0.457 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15814019 SNP-3.15812665. C A . PASS AR2=0.998;DR2=0.998;AF=0.448 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.071:0.932,0.065,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.28:0.755,0.209,0.036 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15814535 SNP-3.15813181. A G . PASS AR2=0.979;DR2=0.984;AF=0.508 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|1:1.537:0.026,0.41,0.563 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.638:0.024,0.315,0.661 1|1:1.915:0.002,0.081,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.77:0.01,0.209,0.78 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.002,0.057,0.941 1|1:1.927:0.002,0.07,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.06,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.85:0.003,0.144,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.789:0.012,0.187,0.801 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.464:0.087,0.362,0.551 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.793:0.01,0.187,0.803 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.818:0.022,0.139,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.907:0.002,0.09,0.908 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.645:0.036,0.284,0.681 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.92:0.001,0.078,0.921 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 1|1:1.818:0.007,0.168,0.825 1|1:1.849:0.003,0.146,0.851 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0.001,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.009,0.154,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.883:0.003,0.112,0.885 1|1:1.744:0.032,0.192,0.776 0|0:0:1,0,0 1|1:2:0,0,1 +3 15814961 SNP-3.15813607. C A . PASS AR2=1;DR2=1;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15815100 SNP-3.15813746. C A . PASS AR2=0.992;DR2=0.994;AF=0.421 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.606:0.394,0.606,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.551:0.079,0.292,0.63 1|1:1.748:0.003,0.246,0.751 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.285:0.134,0.447,0.419 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15815426 SNP-3.15814072. C A . PASS AR2=0.965;DR2=0.971;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.008,0.167,0.824 1|1:1.739:0.016,0.23,0.754 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.814:0.009,0.167,0.823 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0.01,0.171,0.82 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.81:0.01,0.171,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.81:0.01,0.17,0.82 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.012,0.211,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.002,0.154,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.016,0.195,0.789 1|1:1.622:0.034,0.31,0.656 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.944:0.121,0.813,0.066 1|1:1.528:0.038,0.396,0.566 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.014,0.199,0.787 1|1:1.816:0.007,0.171,0.823 1|1:2:0,0,1 1|1:1.818:0.009,0.165,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.807:0.009,0.175,0.816 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.645:0.037,0.281,0.682 1|1:2:0,0,1 1|1:1.821:0.01,0.158,0.832 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.81:0.01,0.17,0.82 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.809:0.01,0.172,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.01,0.17,0.82 1|1:2:0,0,1 1|1:1.692:0.021,0.265,0.713 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.781:0.01,0.2,0.79 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.723:0.024,0.229,0.747 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.776:0.013,0.198,0.789 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.004,0.12,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.01,0.171,0.819 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 1|0:1:0,1,0 1|1:1.77:0.014,0.201,0.784 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.788:0.012,0.188,0.8 1|1:1.991:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.003,0.091,0.907 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.172:0.057,0.714,0.229 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.396:0.049,0.506,0.445 0|0:0:1,0,0 +3 15816152 SNP-3.15814798. C A . PASS AR2=0.999;DR2=0.999;AF=0.432 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:1.931:0,0.069,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.152:0.849,0.15,0.001 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15819390 SNP-3.15818036. C A . PASS AR2=0.993;DR2=0.996;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.04,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.137:0.263,0.337,0.4 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0,0.073,0.927 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15820972 SNP-3.15819618. C A . PASS AR2=0.954;DR2=0.963;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.021,0 1|1:1.458:0.096,0.35,0.554 1|1:2:0,0,1 1|1:1.685:0.019,0.277,0.704 0|0:0.059:0.942,0.058,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.069,0 1|1:1.84:0.007,0.146,0.847 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.741:0.019,0.222,0.76 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.644:0.025,0.305,0.67 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.741:0.013,0.233,0.754 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.018,0.982 1|1:1.777:0.007,0.209,0.784 1|1:1.99:0,0.01,0.99 1|1:1.562:0.041,0.356,0.603 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.009,0.991 1|1:2:0,0,1 1|0:1.192:0.084,0.641,0.275 1|1:1.564:0.034,0.368,0.598 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.03,0.332,0.639 1|1:1.547:0.035,0.383,0.582 1|1:1.927:0,0.073,0.927 1|1:1.989:0,0.011,0.989 1|1:1.987:0,0.013,0.987 1|1:1.987:0,0.013,0.987 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:1.775:0.014,0.198,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:1.698:0.003,0.296,0.701 1|0:0.974:0.263,0.5,0.237 1|1:1.867:0.003,0.128,0.869 0|0:0:1,0,0 1|1:1.856:0.003,0.137,0.86 0|0:0:1,0,0 1|1:1.807:0.013,0.167,0.82 0|0:0:1,0,0 1|1:1.866:0.005,0.123,0.871 1|1:1.802:0.004,0.19,0.806 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.002,0.113,0.885 1|1:1.81:0.011,0.169,0.821 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.538:0.052,0.358,0.59 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.9,0.099,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.846:0.008,0.138,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.003,0.126,0.871 0|0:0:1,0,0 1|1:1.707:0.027,0.238,0.735 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.085:0.917,0.082,0.002 1|1:1.824:0.011,0.154,0.835 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.799:0.007,0.186,0.807 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.776:0.014,0.196,0.79 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.889:0.002,0.108,0.89 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0,0.143,0.857 0|1:1.299:0.145,0.41,0.445 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15824185 SNP-3.15822831. C A . PASS AR2=0.997;DR2=0.998;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.063:0,0.937,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.352:0,0.648,0.352 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.607:0.002,0.39,0.609 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0.001,0.025,0.974 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15824804 SNP-3.15823450. C A . PASS AR2=0.988;DR2=0.99;AF=0.472 GT:DS:GP 0|0:0.13:0.874,0.122,0.004 1|1:1.972:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.327:0.707,0.26,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.871,0.127,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.893,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.149,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.837,0.154,0.01 0|0:0:1,0,0 0|0:0.204:0.8,0.197,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.267:0.748,0.236,0.016 0|0:0:1,0,0 0|0:0.153:0.854,0.14,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0,0.045,0.954 1|1:1.985:0,0.015,0.985 0|0:0.167:0.838,0.156,0.005 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.404:0.639,0.318,0.043 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15826299 SNP-3.15824945. C A . PASS AR2=0.99;DR2=0.991;AF=0.38 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.129:0.879,0.113,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0.001,0.024,0.975 0|0:0:1,0,0 1|0:0.441:0.584,0.391,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.838:0.341,0.481,0.178 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.833:0.343,0.481,0.176 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|1:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.002,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.89:0.314,0.482,0.204 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15826347 SNP-3.15824993. C A . PASS AR2=0.989;DR2=0.992;AF=0.391 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.915:0.005,0.075,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.537:0.051,0.361,0.588 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.628:0.034,0.304,0.662 1|1:1.665:0.028,0.279,0.693 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.761:0.011,0.217,0.772 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.02,0.185,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.01,0.184,0.805 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.739:0.023,0.216,0.762 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15830365 SNP-3.15829011. C A . PASS AR2=1;DR2=1;AF=0.447 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.002,0.085,0.913 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15833405 SNP-3.15832051. C A . PASS AR2=0.965;DR2=0.973;AF=0.343 GT:DS:GP 0|0:0.036:0.964,0.035,0 0|1:1:0,1,0 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.169:0.161,0.509,0.33 0|0:0:1,0,0 0|1:1.312:0.111,0.467,0.423 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.241:0.159,0.441,0.4 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.002 0|0:0:1,0,0 1|0:0.97:0.236,0.557,0.207 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.475:0.539,0.447,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.952:0.241,0.565,0.193 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.116:0.284,0.316,0.4 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.376:0.636,0.352,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.925,0.075,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.869,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.776:0.383,0.458,0.159 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.073,0 0|0:0:1,0,0 0|0:0.341:0.67,0.319,0.011 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.227:0.122,0.529,0.349 1|1:1.581:0.105,0.208,0.687 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15833795 SNP-3.15832441. C A . PASS AR2=0.969;DR2=0.98;AF=0.424 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.647:0.044,0.264,0.691 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.504:0.059,0.379,0.562 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.49:0.067,0.377,0.556 1|1:1.459:0.071,0.399,0.53 1|1:1.504:0.059,0.379,0.562 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.486:0.067,0.379,0.554 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.584:0.424,0.568,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.484:0.065,0.386,0.549 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.569:0.051,0.33,0.62 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.684:0.034,0.249,0.717 1|1:2:0,0,1 1|1:1.504:0.059,0.379,0.562 1|1:1.7:0.031,0.237,0.731 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.534:0.059,0.349,0.593 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15835616 SNP-3.15834262. C A . PASS AR2=0.987;DR2=0.99;AF=0.325 GT:DS:GP 0|0:0.062:0.938,0.061,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.794:0.015,0.177,0.808 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 1|1:2:0,0,1 0|0:0.557:0.46,0.522,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.617:0.048,0.288,0.664 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.812:0.008,0.172,0.82 0|0:0.24:0.792,0.176,0.032 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.763:0.009,0.219,0.772 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.027,0.19,0.784 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15836215 SNP-3.15834861. A G . PASS AR2=0.948;DR2=0.958;AF=0.457 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.884,0.111,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.333:0.69,0.286,0.023 1|1:1.78:0.012,0.197,0.792 1|1:1.824:0.008,0.159,0.832 1|1:1.84:0.007,0.147,0.846 1|1:2:0,0,1 1|1:1.829:0.007,0.157,0.836 1|1:2:0,0,1 1|1:1.727:0.017,0.239,0.744 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.008,0.174,0.818 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.48:0.043,0.434,0.523 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.786:0.01,0.195,0.795 1|1:2:0,0,1 1|1:1.762:0.013,0.211,0.776 1|1:2:0,0,1 1|1:1.808:0.009,0.173,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.114:0.889,0.107,0.004 0|0:0:1,0,0 1|1:1.765:0.013,0.21,0.778 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.769,0.213,0.017 1|1:1.734:0.018,0.23,0.752 1|0:0.545:0.489,0.477,0.034 0|0:0.031:0.969,0.03,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.243:0.106,0.546,0.349 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.711,0.282,0.007 0|0:0:1,0,0 1|1:1.738:0.016,0.23,0.754 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.638:0.031,0.3,0.669 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.812,0.164,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.119:0.177,0.526,0.297 0|0:0.103:0.897,0.103,0 0|0:0:1,0,0 0|0:0.101:0.906,0.087,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.833:0.008,0.151,0.841 0|0:0:1,0,0 1|1:1.833:0.008,0.152,0.841 0|0:0.256:0.79,0.165,0.046 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.8:0.009,0.183,0.809 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.71:0.019,0.251,0.73 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.304:0.727,0.242,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.907,0.087,0.006 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0.013,0.219,0.768 1|1:1.76:0.013,0.214,0.773 1|1:1.753:0.015,0.217,0.768 1|1:2:0,0,1 0|0:0.091:0.911,0.087,0.002 1|1:1.725:0.017,0.24,0.742 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:1.746:0.016,0.221,0.763 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.495:0.046,0.414,0.54 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.009,0.142,0.849 0|0:0:1,0,0 1|1:1.838:0.008,0.147,0.845 1|1:2:0,0,1 1|1:1.669:0.019,0.292,0.688 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.739:0.409,0.444,0.148 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.776:0.007,0.21,0.783 +3 15836610 SNP-3.15835256. C A . PASS AR2=0.992;DR2=0.994;AF=0.353 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.949,0.05,0 0|0:0:1,0,0 0|0:0.078:0.922,0.077,0.001 0|0:0.045:0.956,0.044,0 1|0:1:0,1,0 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.125:0.879,0.116,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.257:0.751,0.242,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.036:0,0.963,0.036 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.086:0.916,0.081,0.002 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.529:0.505,0.461,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15839721 SNP-3.15838367. C A . PASS AR2=0.895;DR2=0.916;AF=0.283 GT:DS:GP 0|0:0:1,0,0 0|1:1.051:0.184,0.582,0.234 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.679:0.423,0.475,0.102 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.632:0.478,0.412,0.11 0|1:1.267:0.144,0.445,0.411 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.016:0.197,0.589,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.717:0.415,0.452,0.132 1|0:1.001:0.252,0.495,0.253 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.917:0.287,0.509,0.204 0|1:0.967:0.267,0.499,0.234 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.961:0.268,0.503,0.229 0|0:0:1,0,0 0|1:0.96:0.271,0.498,0.231 0|1:1.001:0.252,0.495,0.253 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.101:0.198,0.504,0.298 1|1:1.777:0,0.222,0.778 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.797:0.361,0.48,0.158 1|1:2:0,0,1 0|1:1.277:0.125,0.472,0.403 0|0:0.178:0.841,0.14,0.019 1|1:1.692:0.004,0.301,0.696 1|1:1.948:0,0.052,0.948 1|1:1.931:0,0.069,0.931 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.26:0.768,0.204,0.028 0|0:0.634:0.478,0.41,0.112 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.541:0.04,0.379,0.581 0|0:0:1,0,0 1|1:1.597:0.034,0.335,0.631 1|0:0.931:0.286,0.497,0.217 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.089:0.122,0.667,0.211 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.66:0.042,0.257,0.701 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.969:0.265,0.501,0.234 0|0:0:1,0,0 0|0:0.969:0.265,0.501,0.234 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.019,0.249,0.732 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.115:0.262,0.361,0.377 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.351:0.088,0.472,0.439 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.574:0.504,0.418,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.93:0.287,0.496,0.217 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.002,0.061,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.667:0.471,0.392,0.137 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.862:0.332,0.474,0.194 0|1:0.954:0.272,0.502,0.226 1|1:1.366:0.132,0.369,0.498 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.786:0.384,0.446,0.17 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.912:0,0.088,0.912 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0,0.087,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15841147 SNP-3.15839793. C A . PASS AR2=0.999;DR2=0.999;AF=0.465 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15842052 SNP-3.15840698. C A . PASS AR2=0.994;DR2=0.994;AF=0.479 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.922,0.077,0.001 0|0:0.056:0.945,0.055,0.001 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 1|1:2:0,0,1 1|0:1.036:0,0.964,0.036 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.825,0.165,0.009 0|0:0.071:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.918,0.08,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.976 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0.188:0.819,0.175,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 15842242 SNP-3.15840888. C A . PASS AR2=0.999;DR2=0.999;AF=0.323 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.002:0,0.998,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.009:0,0.991,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.094:0,0.906,0.094 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15847180 SNP-3.15845826. C A . PASS AR2=0.993;DR2=0.994;AF=0.466 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 1|1:1.942:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.114:0.887,0.112,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.999:0.014,0.974,0.013 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0.002,0.189,0.808 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.642:0.004,0.35,0.646 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.957 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0,0.064,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.718,0.281,0.001 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:1.956:0.001,0.043,0.956 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.927:0.002,0.07,0.929 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 15847403 SNP-3.15846049. C A . PASS AR2=0.998;DR2=0.999;AF=0.315 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.639:0.003,0.354,0.642 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0.011,0.978,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15847427 SNP-3.15846073. C A . PASS AR2=0.996;DR2=0.996;AF=0.298 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.009,0.168,0.823 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.915:0.087,0.912,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.006,0.135,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.849:0.006,0.139,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.004,0.12,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15847481 SNP-3.15846127. C A . PASS AR2=1;DR2=1;AF=0.313 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.987:0.017,0.979,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15848368 SNP-3.15847014. C A . PASS AR2=0.99;DR2=0.992;AF=0.316 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.014,0.215,0.771 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.1:0.902,0.097,0.002 0|0:0.253:0.751,0.245,0.004 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.832,0.166,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.958:0.136,0.771,0.094 0|0:0.091:0.911,0.088,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.742:0.016,0.226,0.758 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.073:0.928,0.071,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.117:0.886,0.112,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.896,0.101,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.857,0.14,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15848764 SNP-3.15847410. A G . PASS AR2=0.983;DR2=0.988;AF=0.497 GT:DS:GP 1|1:1.661:0.018,0.303,0.679 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.46:0.024,0.492,0.484 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.925:0.075,0.925,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.004,0.138,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.933:0.067,0.933,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.088,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.595:0.026,0.353,0.621 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.004,0.115,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.008,0.173,0.82 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.007,0.17,0.824 1|1:2:0,0,1 0|1:1.467:0.061,0.411,0.528 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.098,0.9 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.004,0.089,0.907 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.607:0.041,0.312,0.647 1|1:1.677:0.019,0.286,0.696 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15848878 SNP-3.15847524. C A . PASS AR2=1;DR2=1;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.98:0.02,0.98,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15853768 SNP-3.15852414. A G . PASS AR2=0.955;DR2=0.965;AF=0.434 GT:DS:GP 0|1:1.514:0.035,0.415,0.549 0|0:0:1,0,0 1|1:1.757:0.016,0.211,0.773 1|1:1.883:0.004,0.109,0.887 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.003,0.091,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.676:0.037,0.251,0.712 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.041:0.226,0.507,0.267 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.064:0.188,0.561,0.252 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.613:0.029,0.329,0.642 1|1:2:0,0,1 1|1:1.367:0.094,0.444,0.462 1|1:2:0,0,1 1|1:1.624:0.02,0.336,0.644 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.886:0.003,0.108,0.889 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.594:0.406,0.594,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.012:0.232,0.525,0.243 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.88:0.004,0.113,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.331:0.068,0.532,0.4 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.201:0.131,0.538,0.332 1|1:1.613:0.023,0.34,0.636 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.969:0.244,0.544,0.213 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.368:0.051,0.531,0.418 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.612:0.024,0.341,0.636 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.668:0.019,0.293,0.687 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.863:0.004,0.13,0.866 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.01,0.17,0.82 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.004,0.107,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:1.66:0.021,0.297,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.388:0.107,0.399,0.495 0|0:0:1,0,0 0|1:1:0,1,0 +3 15857444 SNP-3.15856090. C A . PASS AR2=0.969;DR2=0.975;AF=0.261 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.746:0.013,0.228,0.759 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.972:0.092,0.845,0.063 1|1:1.654:0.028,0.289,0.683 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.771:0.006,0.217,0.777 1|1:1.558:0.044,0.355,0.602 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.859:0.004,0.133,0.863 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.537:0.016,0.431,0.553 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.912:0.246,0.595,0.158 1|1:1.185:0.176,0.463,0.361 1|1:1.635:0.008,0.35,0.643 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.985:0.039,0.937,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.593:0.024,0.36,0.617 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.92:0.001,0.077,0.921 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.01,0.185,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.003,0.086,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.008,0.147,0.845 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.019,0.221,0.76 1|1:1.704:0.017,0.261,0.722 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15860365 SNP-3.15859011. C A . PASS AR2=0.967;DR2=0.968;AF=0.391 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.033:0.234,0.499,0.267 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.033:0.234,0.499,0.267 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.033:0.234,0.499,0.267 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.999:0.003,0.996,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.99:0.014,0.982,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.988:0.012,0.988,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.033:0.234,0.499,0.267 1|1:2:0,0,1 0|1:1.033:0.234,0.499,0.267 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.033:0.234,0.499,0.267 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.123:0.193,0.49,0.317 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.656:0.004,0.337,0.66 1|1:2:0,0,1 1|0:1.033:0.234,0.499,0.267 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:1.033:0.234,0.499,0.267 1|0:1:0,1,0 0|1:1.033:0.234,0.499,0.267 1|0:1.033:0.234,0.499,0.267 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.033:0.234,0.499,0.267 0|0:0:1,0,0 0|1:1.033:0.234,0.499,0.267 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15860636 SNP-3.15859282. C A . PASS AR2=0.996;DR2=0.997;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.883,0.113,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.017:0,0.983,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.883,0.113,0.004 0|0:0.083:0.918,0.081,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15862776 SNP-3.15861422. A G . PASS AR2=0.996;DR2=0.997;AF=0.516 GT:DS:GP 1|1:1.821:0.002,0.175,0.823 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.021:0.025,0.928,0.047 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.006,0.185,0.81 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.924 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.069,0.929 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.966:0.034,0.966,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15865627 SNP-3.15864273. C A . PASS AR2=0.997;DR2=0.997;AF=0.45 GT:DS:GP 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.753:0.011,0.225,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15865779 SNP-3.15864425. C A . PASS AR2=1;DR2=1;AF=0.459 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15867554 SNP-3.15866200. C A . PASS AR2=0.979;DR2=0.982;AF=0.378 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.134:0.871,0.125,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.198:0.812,0.178,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.335:0.681,0.302,0.016 0|0:0.198:0.812,0.178,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.198:0.812,0.178,0.01 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.164:0.845,0.146,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.294:0.726,0.255,0.019 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.197:0.808,0.187,0.005 1|0:1:0,1,0 0|0:0.266:0.747,0.24,0.013 1|1:2:0,0,1 1|0:1.093:0.003,0.901,0.096 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.238:0.776,0.211,0.014 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.731,0.24,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.893,0.105,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.789,0.201,0.01 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.001 0|0:0.03:0.97,0.029,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.081,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.855,0.141,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.178:0.828,0.166,0.006 0|0:0.328:0.699,0.273,0.028 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15869927 SNP-3.15868573. C A . PASS AR2=0.995;DR2=0.997;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.001,0.333,0.666 1|1:1.67:0.001,0.328,0.671 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.665:0,0.334,0.665 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 +3 15869964 SNP-3.15868610. C A . PASS AR2=0.92;DR2=0.933;AF=0.321 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.228:0.091,0.59,0.319 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.775:0.384,0.457,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.709:0.417,0.457,0.126 0|0:0:1,0,0 1|1:1.742:0.01,0.238,0.752 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.7:0.423,0.455,0.123 1|0:0.7:0.423,0.455,0.123 0|0:0.698:0.424,0.454,0.122 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.702:0.421,0.455,0.123 0|0:0.7:0.423,0.455,0.123 0|0:0.7:0.423,0.455,0.123 0|0:0:1,0,0 0|0:0.702:0.421,0.455,0.123 0|0:0.7:0.423,0.455,0.123 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0,0.048,0.952 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.824:0.005,0.166,0.829 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.877:0.126,0.871,0.003 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.005,0.065,0.931 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.735:0.4,0.464,0.136 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.7:0.423,0.455,0.123 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:0.7:0.423,0.455,0.123 1|0:0.7:0.423,0.455,0.123 1|0:0.625:0.469,0.436,0.095 0|0:0.729:0.404,0.463,0.133 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.702:0.421,0.455,0.123 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.832:0.212,0.745,0.044 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.698:0.424,0.454,0.122 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:1.843:0.006,0.144,0.849 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.7:0.423,0.455,0.123 0|0:0:1,0,0 0|0:0.7:0.423,0.455,0.123 0|1:0.7:0.423,0.455,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.7:0.423,0.455,0.123 0|1:0.7:0.423,0.455,0.123 0|0:0:1,0,0 1|1:0.7:0.423,0.455,0.123 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.002,0.184,0.814 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15871283 SNP-3.15869929. C A . PASS AR2=0.995;DR2=0.996;AF=0.485 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.188:0.821,0.171,0.008 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.045:0,0.955,0.045 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.344:0.672,0.313,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0.101:0.901,0.097,0.002 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15871582 SNP-3.15870228. C A . PASS AR2=1;DR2=1;AF=0.461 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.002:0.009,0.981,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15872706 SNP-3.15871352. C A . PASS AR2=1;DR2=1;AF=0.457 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15873707 SNP-3.15872353. C A . PASS AR2=0.997;DR2=0.997;AF=0.33 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.088:0.914,0.085,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.069:0.933,0.066,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15874648 SNP-3.15873294. C A . PASS AR2=1;DR2=1;AF=0.465 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15877499 SNP-3.15876145. C A . PASS AR2=1;DR2=1;AF=0.461 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15877965 SNP-3.15876611. C A . PASS AR2=1;DR2=1;AF=0.463 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15881921 SNP-3.15880567. C A . PASS AR2=0.987;DR2=0.989;AF=0.309 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.783:0.011,0.195,0.794 1|1:1.801:0.008,0.183,0.809 1|0:1:0,1,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.109:0.898,0.095,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.004,0.15,0.845 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.019:0.981,0.019,0 1|1:1.766:0.012,0.209,0.778 1|0:0.923:0.135,0.808,0.057 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.742:0.016,0.226,0.758 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.779:0.011,0.199,0.79 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0,0.075,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.877:0.003,0.117,0.88 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.001,0.068,0.931 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.863,0.13,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.727:0.019,0.235,0.746 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15883684 SNP-3.15882330. A G . PASS AR2=0.929;DR2=0.942;AF=0.459 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.657:0.025,0.293,0.682 0|0:0:1,0,0 1|1:1.725:0.021,0.234,0.746 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.641:0.036,0.288,0.677 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.149:0.851,0.149,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.781:0.014,0.191,0.795 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.644:0.034,0.288,0.678 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.736:0.017,0.231,0.753 1|1:1.766:0.014,0.206,0.78 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.655:0.03,0.284,0.686 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.672:0.028,0.273,0.7 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.599:0.048,0.304,0.647 1|1:1.746:0.016,0.221,0.763 1|1:1.742:0.014,0.229,0.756 1|1:1.751:0.018,0.213,0.769 1|1:1.722:0.019,0.241,0.74 1|1:1.61:0.039,0.312,0.649 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.015,0.19,0.795 1|1:2:0,0,1 1|1:1.639:0.033,0.296,0.672 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.691:0.025,0.258,0.717 1|1:1.33:0.079,0.512,0.409 1|1:2:0,0,1 1|0:0.893:0.107,0.893,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.705:0.024,0.248,0.728 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.793:0.009,0.189,0.802 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.017,0.235,0.747 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.004,0.154,0.842 1|1:1.736:0.021,0.222,0.757 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.004,0.057,0.938 0|0:0:1,0,0 0|1:0.849:0.151,0.849,0 0|0:0:1,0,0 1|1:1.686:0.025,0.264,0.711 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.664:0.028,0.281,0.691 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.676:0.025,0.274,0.701 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.737:0.014,0.235,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.674:0.028,0.271,0.702 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.794:0.013,0.18,0.807 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.681:0.025,0.269,0.706 1|1:2:0,0,1 1|1:1.774:0.011,0.203,0.786 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0.019,0.144,0.837 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.687:0.022,0.269,0.709 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.7:0.019,0.261,0.719 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.601:0.039,0.32,0.641 1|1:1.761:0.011,0.216,0.772 1|1:1.722:0.02,0.238,0.742 1|1:2:0,0,1 1|1:1.64:0.033,0.294,0.673 1|1:1.705:0.025,0.244,0.73 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.838:0.007,0.148,0.845 1|1:2:0,0,1 1|1:1.751:0.015,0.22,0.766 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.697:0.031,0.241,0.728 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.01,0.184,0.806 1|1:2:0,0,1 1|1:1.79:0.011,0.187,0.802 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.008,0.176,0.816 1|1:2:0,0,1 1|1:1.79:0.01,0.19,0.8 1|1:2:0,0,1 1|1:1.731:0.025,0.22,0.755 1|1:1.547:0.057,0.339,0.604 1|1:2:0,0,1 1|1:1.721:0.019,0.241,0.74 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.594:0.042,0.322,0.636 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.598:0.039,0.323,0.638 0|0:0:1,0,0 1|1:1.56:0.05,0.341,0.609 1|1:1.65:0.032,0.287,0.681 0|0:0:1,0,0 1|1:2:0,0,1 +3 15884489 SNP-3.15883135. C A . 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C A . PASS AR2=0.876;DR2=0.905;AF=0.297 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.11:0.236,0.418,0.346 1|1:1.391:0.092,0.424,0.484 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.052:0.231,0.486,0.283 0|1:1.364:0.101,0.434,0.465 0|0:0.215:0.8,0.186,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.02,0.22,0.76 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.12:0.196,0.489,0.316 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.738,0.245,0.016 0|1:0.459:0.577,0.387,0.036 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.596:0.498,0.409,0.093 0|0:0:1,0,0 1|0:0.778:0.374,0.474,0.152 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.754:0.389,0.467,0.144 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.638:0.461,0.44,0.099 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.526:0.548,0.378,0.074 1|0:0.929:0.317,0.437,0.246 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.175,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.766,0.22,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.774,0.212,0.014 0|0:0.179:0.83,0.16,0.009 0|0:0.206:0.804,0.186,0.01 0|0:0:1,0,0 0|0:0.181:0.826,0.168,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.191:0.818,0.173,0.009 0|0:0:1,0,0 0|0:0.269:0.754,0.223,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.514:0.555,0.375,0.07 0|0:0:1,0,0 0|0:0.32:0.723,0.234,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.727:0.405,0.463,0.132 0|0:0:1,0,0 0|1:0.656:0.344,0.656,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.816,0.174,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.52:0.553,0.374,0.073 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.805:0.356,0.482,0.162 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.527:0.563,0.348,0.089 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.706:0.419,0.456,0.125 1|0:0.835:0.347,0.471,0.182 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.768:0.375,0.482,0.143 0|0:0.652:0.454,0.441,0.106 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.021:0.267,0.444,0.289 0|0:0.242:0.773,0.212,0.015 0|1:0.89:0.308,0.493,0.198 0|0:0:1,0,0 1|1:1.843:0.019,0.12,0.862 0|0:0.757:0.389,0.466,0.145 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.748:0.381,0.49,0.129 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.118:0.197,0.489,0.315 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.406:0.088,0.417,0.495 1|1:1.272:0.14,0.449,0.411 1|0:0.824:0.357,0.462,0.181 1|1:2:0,0,1 1|0:0.513:0.563,0.36,0.076 1|0:0.641:0.466,0.426,0.107 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.579:0.506,0.409,0.085 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.789:0.358,0.495,0.147 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15886252 SNP-3.15884898. C A . PASS AR2=0.957;DR2=0.968;AF=0.271 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.554:0.033,0.381,0.586 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.001 0|0:0.046:0.955,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.032,0.268,0.701 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.317:0.085,0.512,0.402 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.532:0.469,0.531,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.5:0.073,0.355,0.573 1|1:1.813:0,0.186,0.813 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|1:1:0,1,0 1|0:1.09:0.166,0.577,0.256 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.758:0.012,0.218,0.77 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.693:0.307,0.692,0.001 1|1:1.626:0.021,0.332,0.647 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.583:0.052,0.312,0.635 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.741:0.008,0.243,0.749 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.225:0.154,0.467,0.379 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.59:0.047,0.315,0.637 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.435:0.062,0.441,0.497 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.428:0.09,0.392,0.518 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 1|1:1.773:0.017,0.193,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0,0.058,0.942 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15886445 SNP-3.15885091. C A . PASS AR2=0.938;DR2=0.951;AF=0.248 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.302:0.118,0.462,0.42 1|1:1.349:0.105,0.441,0.454 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.002,0.386,0.612 1|1:2:0,0,1 0|1:1.225:0.144,0.486,0.369 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.136:0.184,0.495,0.32 1|0:1.253:0.136,0.474,0.39 0|0:0:1,0,0 1|0:1.241:0.143,0.473,0.384 1|1:2:0,0,1 0|1:1.093:0.198,0.511,0.291 0|1:1.097:0.199,0.505,0.296 1|1:1.638:0.004,0.354,0.642 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.001,0.156,0.843 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.808:0.018,0.156,0.826 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.483:0.054,0.408,0.538 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.177:0.163,0.497,0.34 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.576:0.034,0.356,0.61 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.241:0.137,0.484,0.379 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.438:0.084,0.394,0.522 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.172:0.165,0.499,0.337 0|0:0:1,0,0 1|1:1.249:0.157,0.438,0.406 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.002,0.082,0.916 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.542:0.062,0.335,0.603 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15897972 SNP-3.15896618. C A . PASS AR2=0.986;DR2=0.989;AF=0.447 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.005,0.127,0.868 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.012,0.191,0.797 1|1:1.856:0.005,0.133,0.861 1|1:2:0,0,1 0|1:1.59:0.043,0.323,0.634 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.612:0.038,0.312,0.65 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.802:0.01,0.178,0.812 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.919:0.002,0.077,0.921 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.002,0.072,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.951:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.957:0.044,0.955,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0,0.055,0.945 1|1:1.922:0.001,0.075,0.924 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.6:0.041,0.318,0.641 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.01,0.178,0.812 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.59:0.043,0.323,0.634 1|1:2:0,0,1 1|1:1.868:0.004,0.123,0.873 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15898240 SNP-3.15896886. C A . PASS AR2=0.992;DR2=0.993;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.054,0.001 0|0:0:1,0,0 0|0:0.029:0.972,0.027,0.001 0|0:0.029:0.971,0.028,0 1|1:2:0,0,1 0|0:0.111:0.894,0.102,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.168:0.832,0.168,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.956,0.042,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.036:0.006,0.951,0.043 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.064,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.059:0.941,0.058,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.052:0.949,0.051,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.835,0.156,0.009 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.86,0.134,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0.071:0.93,0.068,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.894,0.102,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15900299 SNP-3.15898945. C A . PASS AR2=0.914;DR2=0.928;AF=0.478 GT:DS:GP 0|0:0.222:0.791,0.196,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.723:0.02,0.237,0.743 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.181:0.161,0.496,0.342 0|0:0:1,0,0 0|0:0.272:0.746,0.235,0.018 0|0:0.444:0.619,0.319,0.062 1|0:1.189:0.163,0.484,0.352 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.655:0.043,0.258,0.699 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.038:0.235,0.492,0.273 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.232:0.782,0.205,0.013 1|1:1.936:0.002,0.06,0.938 1|1:2:0,0,1 0|0:0.58:0.608,0.204,0.188 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.752,0.23,0.018 0|0:0:1,0,0 0|0:0.439:0.627,0.308,0.065 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.364:0.667,0.301,0.031 0|0:0.266:0.753,0.229,0.018 1|1:2:0,0,1 1|0:1.013:0.116,0.755,0.129 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.748,0.234,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.753,0.231,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.759,0.224,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.474:0.569,0.388,0.043 0|0:0.171:0.838,0.153,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.708:0.023,0.246,0.731 1|1:2:0,0,1 0|0:0.233:0.78,0.207,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.459:0.58,0.382,0.038 1|1:1.793:0.012,0.182,0.806 1|1:2:0,0,1 1|1:1.718:0.015,0.251,0.734 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 1|1:1.867:0.003,0.127,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.792:0.008,0.191,0.801 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.85:0.004,0.142,0.854 1|1:2:0,0,1 1|0:1.174:0.167,0.491,0.341 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.003,0.072,0.925 0|0:0:1,0,0 0|0:0.253:0.763,0.22,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.001:0.238,0.522,0.24 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.055:0.227,0.491,0.282 0|0:0.28:0.739,0.241,0.019 0|0:0:1,0,0 0|0:0.25:0.765,0.221,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.235:0.779,0.208,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.732,0.247,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.716:0.019,0.246,0.735 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.954:0.267,0.511,0.221 0|0:0:1,0,0 0|0:0.263:0.753,0.231,0.016 0|0:0:1,0,0 0|1:0.39:0.643,0.323,0.034 1|1:2:0,0,1 0|0:0.265:0.754,0.227,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.282:0.738,0.243,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.719:0.017,0.246,0.736 0|0:0:1,0,0 1|1:1.818:0.008,0.166,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.001,0.118,0.882 0|0:0:1,0,0 0|0:0.239:0.775,0.211,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.176:0.834,0.156,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.054:0.227,0.491,0.282 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.303:0.123,0.452,0.426 0|0:0.559:0.556,0.328,0.116 0|0:0:1,0,0 1|0:1.032:0.238,0.491,0.27 0|0:0:1,0,0 0|0:0.363:0.704,0.229,0.067 1|1:1.822:0.01,0.158,0.832 0|0:0.209:0.805,0.181,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.194:0.818,0.169,0.012 0|0:0.227:0.786,0.201,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.192:0.819,0.17,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.272:0.747,0.234,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.238:0.778,0.206,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15902939 SNP-3.15901585. C A . PASS AR2=0.982;DR2=0.984;AF=0.493 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.844,0.148,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.146:0.862,0.131,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.254:0.765,0.217,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.134:0.871,0.125,0.004 0|0:0.121:0.882,0.115,0.003 1|1:2:0,0,1 0|0:0.203:0.807,0.182,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.133,0.005 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|0:0.903:0.162,0.773,0.065 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.01:0.044,0.901,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.012,0.192,0.795 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.002,0.095,0.903 1|1:1.923:0.001,0.075,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.047:0.954,0.046,0 0|0:0.116:0.888,0.107,0.004 0|0:0:1,0,0 1|1:1.985:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.05:0.033,0.884,0.083 1|1:1.939:0,0.061,0.939 0|0:0.175:0.833,0.159,0.008 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.215:0.797,0.19,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.174:0.833,0.159,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.879,0.115,0.006 0|0:0:1,0,0 0|0:0.137:0.867,0.128,0.005 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 0|0:0.146:0.858,0.138,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.003,0.113,0.885 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 0|0:0.188:0.821,0.17,0.009 0|0:0.138:0.868,0.126,0.006 0|0:0.204:0.807,0.183,0.011 1|1:2:0,0,1 0|0:0:1,0,0 +3 15903204 SNP-3.15901850. C A . PASS AR2=0.956;DR2=0.964;AF=0.446 GT:DS:GP 0|0:0.08:0.922,0.077,0.001 1|1:2:0,0,1 0|0:0.091:0.912,0.086,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.005,0.157,0.838 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.914,0.084,0.002 0|0:0.088:0.914,0.085,0.002 0|0:0:1,0,0 1|1:1.784:0.012,0.193,0.796 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 0|0:0.069:0.933,0.065,0.002 1|1:2:0,0,1 1|1:1.254:0.245,0.256,0.499 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.097:0.905,0.092,0.002 0|0:0:1,0,0 1|1:1.707:0.022,0.248,0.73 1|1:1.727:0.024,0.226,0.751 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.895:0.004,0.097,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.879,0.117,0.004 0|1:1.041:0.297,0.364,0.338 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.008,0.163,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.077,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.893,0.104,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:1.598:0.059,0.285,0.657 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.68:0.028,0.265,0.707 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.628:0.026,0.32,0.654 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.005,0.12,0.875 1|1:1.737:0.014,0.235,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.965:0.102,0.831,0.067 1|1:1.782:0.006,0.207,0.788 0|0:0.104:0.899,0.099,0.003 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.852:0.007,0.134,0.859 1|1:1.832:0.005,0.158,0.837 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.087:0.915,0.084,0.001 1|1:1.842:0.004,0.149,0.846 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.004,0.101,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.003,0.071,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.002,0.133,0.865 1|1:1.723:0.017,0.244,0.739 1|1:1.641:0.027,0.305,0.668 1|1:1.752:0.015,0.219,0.767 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.901,0.096,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.782:0.012,0.195,0.794 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 1|1:2:0,0,1 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0.656:0.562,0.219,0.219 0|0:0.126:0.878,0.118,0.004 1|1:2:0,0,1 0|0:0:1,0,0 +3 15903642 SNP-3.15902288. C A . PASS AR2=0.997;DR2=0.998;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.188:0.833,0.145,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.827:0.005,0.162,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15904461 SNP-3.15903107. C A . PASS AR2=0.99;DR2=0.99;AF=0.469 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.002,0.161,0.837 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:1.941:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.01,0.989 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.009,0.153,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.002,0.072,0.926 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.96,0.04,0.001 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.014:0.003,0.981,0.016 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.063:0.938,0.061,0.001 0|1:1.261:0.02,0.699,0.281 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.048,0 1|1:1.945:0.001,0.054,0.945 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:1.943:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.006:0.029,0.935,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.047:0.954,0.045,0.001 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0,0.067,0.933 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 1|1:1.987:0,0.012,0.988 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 1|1:1.954:0,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:1.835:0.015,0.134,0.85 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 +3 15907342 SNP-3.15905988. C A . PASS AR2=0.997;DR2=0.998;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.432:0.003,0.562,0.435 1|1:1.776:0.008,0.208,0.784 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15910577 SNP-3.15909223. C A . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15912349 SNP-3.15910995. C A . PASS AR2=0.982;DR2=0.987;AF=0.431 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.893:0.003,0.101,0.896 1|1:1.856:0.002,0.141,0.858 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.006,0.14,0.854 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.005,0.106,0.89 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.86:0.005,0.129,0.865 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.816:0,0.184,0.816 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.419:0.022,0.536,0.442 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.961:0,0.039,0.961 0|1:1:0,1,0 1|1:1.685:0.01,0.295,0.695 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.942:0,0.057,0.942 1|0:1:0,1,0 1|1:1.734:0.004,0.257,0.739 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.003,0.118,0.88 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.86:0.005,0.129,0.865 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.277:0.212,0.299,0.489 1|1:1.864:0.006,0.124,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.012,0.244,0.744 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0,0.108,0.892 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.169:0.057,0.716,0.227 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15912431 SNP-3.15911077. C A . PASS AR2=0.975;DR2=0.981;AF=0.276 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.537:0.055,0.352,0.593 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.5:0.06,0.38,0.56 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.813:0.188,0.812,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.642:0.027,0.304,0.669 1|1:1.891:0.001,0.106,0.893 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0.002,0.066,0.933 1|1:1.689:0.022,0.267,0.711 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.643:0.033,0.29,0.677 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.006,0.089,0.905 0|0:0:1,0,0 1|1:1.92:0.001,0.078,0.921 1|0:1:0,1,0 1|1:1.766:0.009,0.216,0.775 0|0:0:1,0,0 1|1:1.809:0.006,0.18,0.815 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.899:0.222,0.657,0.121 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.532:0.057,0.355,0.588 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.735:0.03,0.205,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.002,0.095,0.902 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15915064 SNP-3.15913710. C A . PASS AR2=1;DR2=1;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.003:0.005,0.988,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15915708 SNP-3.15914354. A G . PASS AR2=0.947;DR2=0.959;AF=0.403 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.844,0.149,0.007 1|1:1.679:0.026,0.269,0.705 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.682:0.025,0.268,0.707 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.312:0.087,0.514,0.399 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.729:0.018,0.234,0.747 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.709:0.022,0.248,0.73 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.729:0.018,0.235,0.747 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.679:0.025,0.27,0.704 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.732:0.018,0.232,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.02,0.239,0.741 1|1:1.717:0.02,0.243,0.737 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.745:0.02,0.215,0.765 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.996:0.209,0.587,0.204 1|1:2:0,0,1 1|1:1.729:0.018,0.235,0.747 1|1:1.724:0.019,0.238,0.743 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.713:0.02,0.246,0.733 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.644:0.033,0.29,0.677 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.018,0.236,0.746 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.654:0.029,0.287,0.683 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.744:0.486,0.284,0.23 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.686:0.025,0.264,0.711 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.738:0.017,0.227,0.755 1|0:1:0,1,0 1|1:1.635:0.032,0.3,0.668 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.643:0.041,0.275,0.684 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.018,0.238,0.744 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.747:0.02,0.214,0.767 1|1:1.708:0.02,0.252,0.728 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.538:0.046,0.369,0.584 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.697:0.023,0.258,0.719 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.771:0.014,0.2,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.711:0.022,0.245,0.733 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15916013 SNP-3.15914659. C A . PASS AR2=0.989;DR2=0.991;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.004,0.106,0.89 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.913:0.087,0.913,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.009,0.204,0.788 1|1:1.785:0.012,0.191,0.797 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.827:0.005,0.162,0.832 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.606:0.395,0.605,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.028,0.273,0.699 1|1:1.65:0.029,0.292,0.679 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.84:0.006,0.148,0.846 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15917390 SNP-3.15916036. C A . PASS AR2=1;DR2=1;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15917486 SNP-3.15916132. C A . PASS AR2=0.997;DR2=0.997;AF=0.502 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.785:0.009,0.197,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.825:0.005,0.165,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.004,0.158,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.856:0.005,0.134,0.861 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.002,0.046,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15917567 SNP-3.15916213. C A . PASS AR2=0.996;DR2=0.996;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.071:0.929,0.07,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.021:0.041,0.897,0.062 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.12:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0.108:0.898,0.096,0.006 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.839:0.007,0.147,0.846 0|0:0:1,0,0 +3 15917764 SNP-3.15916410. C A . PASS AR2=1;DR2=1;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15919165 SNP-3.15917811. C A . PASS AR2=0.974;DR2=0.98;AF=0.469 GT:DS:GP 0|0:0.189:0.822,0.166,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.886:0.005,0.105,0.891 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.257:0.76,0.222,0.018 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.764,0.219,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.464:0.596,0.343,0.06 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.817,0.174,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.8,0.174,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.951 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.633:0.009,0.349,0.642 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.227:0.786,0.201,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.211:0.8,0.188,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.213:0.798,0.191,0.011 1|1:2:0,0,1 0|0:0.16:0.845,0.149,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.448:0.598,0.355,0.046 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.004,0.079,0.917 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0.37:0.675,0.28,0.045 0|0:0:1,0,0 0|0:0.233:0.781,0.205,0.014 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.854,0.139,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.799,0.19,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.189:0.819,0.173,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.219:0.792,0.196,0.012 0|0:0:1,0,0 0|0:0.301:0.724,0.251,0.025 1|1:2:0,0,1 0|0:0:1,0,0 +3 15919943 SNP-3.15918589. C A . PASS AR2=0.998;DR2=0.998;AF=0.4 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.042:0.959,0.041,0.001 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.016:0,0.984,0.016 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.052:0.949,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15921499 SNP-3.15920145. A G . PASS AR2=1;DR2=1;AF=0.424 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15922395 SNP-3.15921041. A G . PASS AR2=0.986;DR2=0.988;AF=0.231 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.017:0.983,0.017,0 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.889,0.111,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.369:0.666,0.299,0.035 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0.005:0.995,0.005,0 0|0:0.034:0.966,0.034,0 0|0:0.113:0.889,0.109,0.002 0|0:0:1,0,0 0|0:0.128:0.874,0.123,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.046,0.002 0|0:0:1,0,0 1|0:0.724:0.286,0.704,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.141:0.862,0.135,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.905,0.091,0.005 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.279:0.725,0.271,0.004 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.134:0.873,0.12,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.921,0.079,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15922480 SNP-3.15921126. C A . PASS AR2=0.981;DR2=0.986;AF=0.328 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.709:0.022,0.247,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.018,0.217,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.04,0.325,0.635 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.663:0.028,0.281,0.691 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.522:0.059,0.361,0.58 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.516:0.067,0.35,0.583 1|1:1.484:0.131,0.253,0.616 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.002,0.152,0.846 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.08,0.919 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.684:0.025,0.265,0.71 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15923846 SNP-3.15922492. C A . PASS AR2=0.999;DR2=0.999;AF=0.324 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.287:0,0.713,0.287 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15923992 SNP-3.15922638. A G . PASS AR2=1;DR2=1;AF=0.481 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 15927697 SNP-3.15926343. A G . PASS AR2=0.999;DR2=0.999;AF=0.295 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0,0.098,0.902 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15929137 SNP-3.15927783. A G . PASS AR2=0.992;DR2=0.994;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.639:0.478,0.404,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.844:0.336,0.484,0.18 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.888,0.107,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0.001 0|0:0:1,0,0 1|1:2:0,0,1 +3 15929691 SNP-3.15928337. C A . PASS AR2=0.961;DR2=0.968;AF=0.371 GT:DS:GP 0|0:0.234:0.79,0.186,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0.001 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0.243:0.775,0.206,0.019 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.7,0.273,0.027 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.79,0.198,0.012 1|0:1:0,1,0 0|0:0.052:0.949,0.049,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.352:0.678,0.291,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.108,0.002 0|0:0:1,0,0 0|0:0.115:0.887,0.111,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.759,0.237,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.832,0.162,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.401:0.634,0.332,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.012,0.087,0.901 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.242:0.778,0.202,0.02 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.883,0.116,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0.168:0.837,0.157,0.006 0|0:0.346:0.684,0.285,0.03 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.654,0.31,0.037 1|0:1:0,1,0 0|0:0.342:0.688,0.282,0.03 0|1:1:0,1,0 0|0:0.341:0.689,0.282,0.03 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.296:0.721,0.262,0.017 0|0:0:1,0,0 0|0:0.136:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.332:0.696,0.275,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.718,0.251,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.759,0.222,0.019 0|0:0.21:0.805,0.18,0.015 0|0:0.345:0.685,0.284,0.031 1|1:2:0,0,1 0|0:0.338:0.692,0.277,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.987:0.305,0.403,0.292 1|1:2:0,0,1 0|0:0:1,0,0 +3 15930366 SNP-3.15929012. C A . PASS AR2=0.993;DR2=0.993;AF=0.3 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.929,0.067,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.108,0.003 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.895,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|1:1.082:0,0.918,0.082 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.866,0.134,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.815,0.178,0.008 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15931727 SNP-3.15930373. A G . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15931993 SNP-3.15930639. A G . PASS AR2=0.984;DR2=0.988;AF=0.409 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.021,0.169,0.81 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.79:0.01,0.189,0.801 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.853:0.005,0.137,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.992:0.067,0.873,0.059 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.78:0.011,0.198,0.791 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.873:0.004,0.119,0.877 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.006,0.125,0.869 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.266:0.164,0.405,0.431 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.837:0.007,0.149,0.844 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.869:0.004,0.122,0.874 1|1:1.863:0.005,0.128,0.867 1|1:1.812:0.007,0.175,0.819 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.855:0.005,0.135,0.86 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:1.963:0.001,0.036,0.963 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.007,0.169,0.824 +3 15934316 SNP-3.15932962. C A . PASS AR2=1;DR2=1;AF=0.284 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15937104 SNP-3.15935750. C A . PASS AR2=1;DR2=1;AF=0.29 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15940139 SNP-3.15938785. C A . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15941372 SNP-3.15940018. A G . 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C A . PASS AR2=1;DR2=1;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15943766 SNP-3.15942412. A G . PASS AR2=0.945;DR2=0.955;AF=0.192 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.02,0.12,0.861 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.346:0.683,0.288,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.22:0.797,0.186,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.78,0.204,0.017 0|0:0.125:0.88,0.116,0.004 1|1:2:0,0,1 0|0:0.1:0.903,0.094,0.003 1|0:1:0,1,0 1|1:1.824:0.002,0.172,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.072:0.93,0.069,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0.162:0.858,0.122,0.02 1|1:1.837:0.006,0.151,0.843 1|0:0.955:0.13,0.785,0.085 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.781:0.253,0.712,0.034 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.074,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.925,0.074,0.001 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.734,0.235,0.031 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0.266:0.747,0.239,0.014 0|0:0.119:0.886,0.109,0.005 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.128,0.004 1|1:2:0,0,1 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|1:0.851:0.286,0.577,0.137 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.685,0.286,0.029 0|0:0.599:0.457,0.487,0.056 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.797,0.199,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.185:0.824,0.166,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.308:0.717,0.259,0.024 1|1:2:0,0,1 0|0:0.455:0.603,0.338,0.059 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0.049,0.308,0.643 0|0:0.079:0.924,0.073,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 0|0:0.16:0.85,0.141,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 0|0:0.262:0.741,0.256,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15944709 SNP-3.15943355. C A . PASS AR2=0.993;DR2=0.994;AF=0.264 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.001,0.084,0.916 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.002:0.006,0.986,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.238:0.018,0.726,0.256 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0,0.064,0.935 0|1:1.23:0.024,0.722,0.254 1|1:1.91:0.001,0.089,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.264:0.01,0.716,0.274 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.256:0.02,0.704,0.276 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15945019 SNP-3.15943665. C A . PASS AR2=0.999;DR2=0.999;AF=0.263 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.874,0.126,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15945110 SNP-3.15943756. A G . PASS AR2=0.95;DR2=0.96;AF=0.305 GT:DS:GP 1|1:1.637:0.023,0.317,0.66 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.057:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0.104:0.896,0.103,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.02:0.98,0.02,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 1|1:1.643:0.029,0.299,0.672 1|1:2:0,0,1 1|1:1.851:0.007,0.136,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.019,0.239,0.742 0|0:0:1,0,0 1|1:1.783:0.014,0.19,0.797 0|0:0.148:0.858,0.135,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.008,0.145,0.847 0|0:0:1,0,0 1|1:1.866:0.007,0.121,0.872 0|1:1:0,1,0 1|1:1.837:0.004,0.154,0.842 1|1:2:0,0,1 1|1:1.624:0.031,0.314,0.655 1|1:1.722:0.02,0.238,0.742 1|1:1.84:0.007,0.146,0.847 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 1|1:1.894:0.003,0.1,0.897 0|0:0:1,0,0 1|1:1.808:0.01,0.172,0.818 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.012,0.217,0.77 1|1:1.832:0.007,0.153,0.839 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.802:0.01,0.178,0.812 0|0:0:1,0,0 1|0:0.68:0.321,0.679,0 1|1:1.786:0.012,0.191,0.798 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.01,0.18,0.811 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.481:0.097,0.325,0.578 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.938:0.157,0.748,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.771:0.013,0.203,0.784 1|1:1.767:0.013,0.206,0.78 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.881:0.003,0.112,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.015,0.228,0.757 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.142:0.27,0.319,0.411 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.86,0.138,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.937,0.061,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.601:0.028,0.342,0.629 1|1:2:0,0,1 1|1:1.787:0.011,0.191,0.798 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.072,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.743:0.017,0.224,0.76 1|1:1.862:0.004,0.131,0.865 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.944,0.055,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.88:0.003,0.114,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.009,0.15,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.011,0.143,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 1|1:2:0,0,1 +3 15946086 SNP-3.15944732. C A . PASS AR2=0.999;DR2=0.999;AF=0.296 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.056:0,0.944,0.056 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15947339 SNP-3.15945985. C A . PASS AR2=0.934;DR2=0.953;AF=0.407 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.375:0.656,0.313,0.031 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.368:0.676,0.28,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.371:0.662,0.305,0.033 0|1:1:0,1,0 0|0:0.291:0.732,0.246,0.023 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.336:0.693,0.279,0.029 0|0:0:1,0,0 0|0:0.276:0.745,0.234,0.021 0|0:0.562:0.528,0.382,0.09 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.767,0.216,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.346:0.683,0.288,0.029 0|0:0:1,0,0 0|0:0.337:0.692,0.279,0.029 0|0:0.339:0.69,0.281,0.029 0|0:0.329:0.698,0.275,0.027 0|0:0:1,0,0 0|0:0.367:0.667,0.299,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.376:0.659,0.306,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.305:0.724,0.248,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.31:0.713,0.265,0.022 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.926,0.074,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.369:0.663,0.304,0.033 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.389:0.649,0.313,0.038 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.953,0.046,0.001 0|1:0.675:0.384,0.557,0.059 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.302:0.72,0.258,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.339:0.69,0.281,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.365:0.664,0.307,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.296:0.727,0.251,0.022 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.136:0.868,0.128,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.514:0.574,0.337,0.088 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.931:0.361,0.347,0.292 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.67:0.449,0.432,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.242:0.773,0.213,0.015 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.301:0.721,0.256,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.339:0.69,0.281,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.28:0.745,0.23,0.025 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15947702 SNP-3.15946348. A G . PASS AR2=1;DR2=1;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15947731 SNP-3.15946377. A G . 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C A . PASS AR2=1;DR2=1;AF=0.247 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 15950880 SNP-3.15949526. C A . PASS AR2=0.994;DR2=0.994;AF=0.278 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.001,0.094,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.054,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.006,0.225,0.769 1|1:1.984:0,0.015,0.985 1|1:1.975:0,0.024,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.002,0.085,0.913 1|1:1.966:0,0.033,0.967 1|1:1.962:0,0.038,0.962 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.001,0.068,0.931 0|0:0.002:0.998,0.002,0 1|1:1.953:0,0.046,0.953 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0,0.049,0.951 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0.001,0.022,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.002,0.095,0.904 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.001,0.065,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 +3 15953451 SNP-3.15952097. C A . PASS AR2=0.995;DR2=0.996;AF=0.307 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.864,0.129,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.094,0.002 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.123:0.88,0.116,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.126:0.878,0.118,0.004 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.105,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15954887 SNP-3.15953533. A G . PASS AR2=0.99;DR2=0.992;AF=0.398 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.902:0.003,0.093,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.125:0.879,0.117,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.859,0.136,0.005 1|1:2:0,0,1 0|0:0.249:0.763,0.226,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.921,0.078,0.001 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.91,0.088,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.16:0.846,0.147,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.856,0.139,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 1|1:1.747:0.025,0.204,0.772 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.793:0.004,0.199,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.885:0.003,0.109,0.888 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15955221 SNP-3.15953867. A G . PASS AR2=0.899;DR2=0.926;AF=0.271 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:1.68:0.03,0.26,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.752:0.017,0.215,0.769 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.38:0.097,0.426,0.477 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.647:0.036,0.282,0.682 1|1:1.344:0.123,0.411,0.466 1|1:2:0,0,1 1|1:1.474:0.069,0.387,0.543 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.193:0.187,0.433,0.38 1|1:2:0,0,1 0|1:1.409:0.045,0.5,0.454 1|1:2:0,0,1 1|1:1.659:0.034,0.274,0.692 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.176:0.183,0.458,0.359 0|1:1.426:0.077,0.421,0.503 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.057:0.241,0.461,0.298 0|0:0:1,0,0 0|0:0.973:0.268,0.491,0.241 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.463:0.538,0.46,0.002 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.747:0.017,0.219,0.764 1|1:2:0,0,1 1|1:1.66:0.026,0.288,0.686 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.333:0.09,0.487,0.423 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.427:0.083,0.407,0.51 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.36:0.103,0.433,0.464 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.016,0.192,0.792 1|1:1.573:0.048,0.332,0.62 0|1:1.247:0.177,0.398,0.424 1|1:2:0,0,1 1|1:1.309:0.105,0.481,0.414 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.262:0.094,0.549,0.356 1|1:1.769:0.017,0.197,0.786 1|1:1.174:0.22,0.387,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|1:1.506:0.061,0.372,0.567 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.791:0.377,0.456,0.168 1|1:2:0,0,1 1|0:1.14:0.205,0.45,0.345 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.212:0.158,0.472,0.37 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.989:0.243,0.524,0.233 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.633:0.486,0.394,0.119 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.418:0.058,0.466,0.476 1|1:1.589:0.053,0.304,0.642 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.717:0.021,0.24,0.738 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.772:0.017,0.195,0.788 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 +3 15956001 SNP-3.15954647. C A . PASS AR2=0.961;DR2=0.968;AF=0.225 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0.022:0.978,0.022,0 0|0:0.018:0.982,0.018,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.166:0.123,0.589,0.288 0|1:1.389:0.038,0.535,0.427 0|0:0.024:0.976,0.024,0 1|0:0.767:0.384,0.465,0.151 1|0:1:0,1,0 0|1:1.161:0.143,0.553,0.304 1|0:1.183:0.11,0.597,0.293 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.173:0.117,0.592,0.291 1|0:1:0,1,0 0|0:0.007:0.993,0.007,0 1|1:1.926:0.002,0.071,0.927 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.239:0.103,0.555,0.342 0|0:0.021:0.979,0.021,0 1|1:1.869:0.002,0.127,0.871 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.139:0.165,0.53,0.305 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.367:0.048,0.538,0.415 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|0:1.428:0.06,0.452,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:1.894:0.004,0.099,0.898 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.007,0.154,0.839 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.019,0.268,0.712 0|0:0:1,0,0 +3 15962868 SNP-3.15961514. A G . PASS AR2=0.927;DR2=0.943;AF=0.262 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 1|1:1.782:0.014,0.191,0.796 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.228:0.126,0.519,0.355 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.331:0.224,0.221,0.555 0|0:0.652:0.462,0.424,0.114 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.161:0.174,0.491,0.335 0|1:0.845:0.33,0.496,0.174 0|0:0:1,0,0 1|1:1.644:0.034,0.288,0.678 0|0:0:1,0,0 1|1:1.594:0.036,0.333,0.63 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.288:0.136,0.439,0.424 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0.353:0.653,0.341,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|1:1.483:0.039,0.439,0.522 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.583:0.03,0.357,0.613 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.656:0.032,0.281,0.688 0|0:0.953:0.269,0.509,0.222 1|1:1.721:0.029,0.22,0.751 1|1:2:0,0,1 1|1:1.582:0.048,0.323,0.63 1|1:1.044:0.239,0.478,0.283 1|1:1.462:0.086,0.366,0.548 0|1:1.047:0.236,0.482,0.283 0|0:0:1,0,0 1|1:1.782:0.01,0.198,0.792 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.651:0.033,0.284,0.684 0|0:0:1,0,0 1|1:1.719:0.021,0.239,0.74 1|1:1.639:0.033,0.296,0.671 0|0:0.598:0.485,0.432,0.083 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.997:0.272,0.46,0.268 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.249:0.126,0.5,0.375 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.998:0.215,0.571,0.214 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.7:0.023,0.254,0.723 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15963726 SNP-3.15962372. C A . PASS AR2=1;DR2=1;AF=0.288 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15964296 SNP-3.15962942. C A . PASS AR2=0.996;DR2=0.997;AF=0.277 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.857:0.001,0.141,0.858 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.735:0.009,0.247,0.744 1|1:1.817:0.003,0.177,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.905:0.001,0.093,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15964532 SNP-3.15963178. C A . PASS AR2=1;DR2=1;AF=0.267 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15966855 SNP-3.15965501. A G . PASS AR2=1;DR2=1;AF=0.397 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15968302 SNP-3.15966948. A G . PASS AR2=1;DR2=1;AF=0.315 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15968647 SNP-3.15967293. A G . PASS AR2=0.999;DR2=0.999;AF=0.399 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15968918 SNP-3.15967564. A G . PASS AR2=0.979;DR2=0.984;AF=0.287 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.053,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.674:0.026,0.274,0.7 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.819:0.008,0.164,0.827 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.682:0.032,0.253,0.714 1|1:2:0,0,1 1|1:1.487:0.074,0.365,0.561 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.91,0.084,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.586:0.039,0.336,0.625 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.895,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.7:0.018,0.265,0.718 0|0:0:1,0,0 1|1:1.878:0.003,0.115,0.881 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.876,0.122,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.784:0.012,0.193,0.796 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.194:0.817,0.172,0.011 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.869,0.129,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15969236 SNP-3.15967882. A G . PASS AR2=0.874;DR2=0.9;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.61:0.059,0.272,0.669 0|1:1.356:0.104,0.436,0.46 1|1:2:0,0,1 1|1:1.327:0.109,0.454,0.437 0|0:0:1,0,0 0|1:1.231:0.143,0.483,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.082:0.219,0.481,0.301 0|1:1:0,1,0 1|1:1.278:0.131,0.46,0.409 1|1:1.119:0.197,0.488,0.316 0|1:1.296:0.125,0.455,0.421 0|1:1.222:0.151,0.477,0.372 1|0:1.3:0.123,0.454,0.423 1|0:1:0,1,0 1|1:1.083:0.234,0.449,0.317 1|1:1.22:0.147,0.486,0.367 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.189:0.181,0.449,0.37 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.478:0.074,0.374,0.552 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.214:0.157,0.472,0.371 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.115:0.197,0.49,0.312 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.215:0.163,0.46,0.377 1|0:1:0,1,0 1|1:1.144:0.187,0.483,0.33 1|1:1.324:0.118,0.439,0.442 1|0:1.251:0.139,0.471,0.39 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.218:0.152,0.477,0.371 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.223:0.15,0.476,0.373 1|0:1.253:0.138,0.47,0.392 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.189:0.166,0.479,0.355 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.344:0.109,0.439,0.453 0|0:0:1,0,0 1|1:1.415:0.088,0.41,0.502 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.45:0.082,0.386,0.532 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.382:0.128,0.362,0.51 0|1:1.21:0.153,0.484,0.363 1|0:1.234:0.145,0.475,0.38 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.092:0.207,0.494,0.299 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.338:0.114,0.434,0.452 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.215:0.159,0.468,0.374 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15970345 SNP-3.15968991. C A . PASS AR2=0.991;DR2=0.992;AF=0.283 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.73:0.015,0.241,0.744 1|1:1.644:0.027,0.301,0.672 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.823:0.007,0.163,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.838:0.006,0.15,0.844 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.848:0.005,0.142,0.853 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.838:0.006,0.15,0.844 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.012,0.988 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.056,0.943 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.007,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.695:0.023,0.259,0.718 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15970854 SNP-3.15969500. A G . PASS AR2=0.999;DR2=0.999;AF=0.376 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.004,0.049,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15971326 SNP-3.15969972. A G . PASS AR2=0.992;DR2=0.993;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.008,0.145,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.789,0.207,0.003 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.215:0.79,0.206,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.005,0.117,0.878 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.123,0.872 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.003,0.091,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.002,0.056,0.942 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15972105 SNP-3.15970751. A G . PASS AR2=0.973;DR2=0.979;AF=0.377 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.318:0.706,0.269,0.025 0|0:0.24:0.769,0.222,0.009 0|0:0.228:0.78,0.211,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.232:0.779,0.21,0.011 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.137:0.868,0.126,0.006 0|0:0.252:0.766,0.216,0.018 0|0:0.25:0.765,0.22,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.719:0.35,0.582,0.069 0|0:0.218:0.797,0.189,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.129:0.875,0.122,0.003 1|1:2:0,0,1 0|0:0.257:0.754,0.235,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.153:0.851,0.145,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.25:0.771,0.208,0.021 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.872,0.125,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.185:0.82,0.175,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.944,0.054,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.181:0.831,0.158,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.529:0.503,0.465,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.892,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.789,0.197,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.434:0.65,0.266,0.084 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0.216:0.798,0.189,0.013 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.89,0.108,0.002 1|1:2:0,0,1 +3 15974601 SNP-3.15973247. C A . PASS AR2=0.98;DR2=0.983;AF=0.251 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.336:0.014,0.636,0.35 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.06,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.89:0.005,0.1,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.247:0.066,0.621,0.313 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.817:0.008,0.167,0.825 1|1:2:0,0,1 1|1:1.267:0.058,0.616,0.325 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.005,0.104,0.892 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.06:0.165,0.611,0.224 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.379:0.018,0.584,0.398 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.005,0.104,0.891 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.004,0.085,0.91 1|1:2:0,0,1 1|1:1.717:0.019,0.245,0.736 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.899:0.004,0.092,0.903 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.891:0.004,0.101,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.002,0.1,0.898 0|0:0:1,0,0 +3 15976989 SNP-3.15975635. A G . PASS AR2=0.999;DR2=0.999;AF=0.225 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0,0.068,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15977444 SNP-3.15976090. A G . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15978213 SNP-3.15976859. C A . PASS AR2=0.999;DR2=0.999;AF=0.265 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15979612 SNP-3.15978258. A G . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 15979735 SNP-3.15978381. A G . PASS AR2=0.995;DR2=0.996;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.933:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.002,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.001,0.071,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.087,0.91 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.496:0.063,0.377,0.559 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 15980358 SNP-3.15979004. A G . PASS AR2=0.998;DR2=0.998;AF=0.318 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.001,0.073,0.926 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:1.954:0.001,0.045,0.955 0|0:0:1,0,0 1|1:1.943:0.002,0.054,0.944 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0.001,0.082,0.917 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 15981578 SNP-3.15980224. C A . PASS AR2=0.995;DR2=0.996;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0,0.066,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.01,0.181,0.81 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.003,0.104,0.894 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.837:0.002,0.159,0.839 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15983192 SNP-3.15981838. C A . PASS AR2=0.936;DR2=0.951;AF=0.367 GT:DS:GP 0|0:0.461:0.584,0.37,0.045 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.317:0.709,0.266,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.806,0.186,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.879,0.117,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.727,0.25,0.023 0|0:0:1,0,0 0|0:0.272:0.747,0.235,0.018 0|0:0:1,0,0 0|0:0.309:0.715,0.261,0.024 1|1:2:0,0,1 0|0:0.27:0.752,0.226,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.347:0.678,0.297,0.025 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.778,0.209,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.733,0.246,0.021 0|0:0.276:0.743,0.238,0.019 0|0:0.291:0.731,0.248,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.359:0.674,0.293,0.033 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.286:0.732,0.25,0.018 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.744,0.238,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.289:0.732,0.247,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.556:0.504,0.436,0.06 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.315:0.71,0.265,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.295:0.727,0.252,0.022 1|1:2:0,0,1 0|0:0.296:0.726,0.251,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.902,0.093,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.711,0.265,0.024 0|0:0:1,0,0 0|0:0.296:0.726,0.251,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.471:0.575,0.38,0.046 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.841,0.154,0.005 0|0:0.313:0.705,0.278,0.018 0|0:0:1,0,0 0|0:0.092:0.91,0.089,0.002 0|0:0:1,0,0 0|0:0.213:0.793,0.2,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.726,0.252,0.022 1|1:2:0,0,1 0|0:0.29:0.731,0.248,0.021 0|0:0:1,0,0 0|0:0.368:0.666,0.301,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.347:0.683,0.286,0.031 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.182:0.825,0.167,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.202:0.81,0.178,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.3:0.724,0.253,0.023 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.31:0.715,0.261,0.024 0|0:0.292:0.73,0.249,0.022 0|0:0.289:0.732,0.246,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.727,0.251,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.448:0.613,0.326,0.061 0|0:0:1,0,0 0|0:0.317:0.709,0.266,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.296:0.727,0.251,0.023 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15985025 SNP-3.15983671. A G . PASS AR2=0.955;DR2=0.964;AF=0.375 GT:DS:GP 1|1:1.903:0.002,0.092,0.906 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.027:0.973,0.027,0 0|0:0.262:0.756,0.227,0.017 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.897:0.21,0.684,0.107 1|0:1:0,1,0 0|0:0.39:0.646,0.318,0.036 0|0:0.373:0.662,0.304,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.391:0.649,0.312,0.04 0|0:0:1,0,0 0|0:0.303:0.722,0.253,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.738,0.24,0.021 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.002,0.096,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.22:0.792,0.195,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.888:0.003,0.106,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.142:0.863,0.132,0.005 1|1:1.902:0.003,0.093,0.904 1|1:1.874:0.004,0.118,0.878 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.002,0.094,0.904 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.003,0.113,0.884 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.004,0.125,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.061:0.042,0.855,0.103 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.255:0.766,0.214,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.851:0.004,0.14,0.855 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.071:0.931,0.068,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.238:0.777,0.209,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.603:0.477,0.443,0.08 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.846,0.154,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.224:0.785,0.206,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.276:0.743,0.238,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.377:0.662,0.298,0.039 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.003,0.099,0.898 0|0:0.198:0.812,0.177,0.01 0|0:0.37:0.664,0.302,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.715,0.258,0.027 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.217:0.795,0.192,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.749,0.229,0.022 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.722,0.253,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.219:0.796,0.189,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.03,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.099,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.008,0.126,0.867 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.196:0.815,0.173,0.011 0|0:0:1,0,0 1|1:2:0,0,1 +3 15988366 SNP-3.15987012. C A . PASS AR2=1;DR2=1;AF=0.298 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15989426 SNP-3.15988072. C A . PASS AR2=0.992;DR2=0.992;AF=0.261 GT:DS:GP 0|0:0.026:0.974,0.026,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.039:0.961,0.038,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.882:0,0.117,0.882 1|1:1.903:0,0.096,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.227:0.079,0.615,0.306 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.167:0.058,0.717,0.225 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.002,0.05,0.948 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.031,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:1.862:0.005,0.128,0.867 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15990244 SNP-3.15988890. C A . PASS AR2=1;DR2=1;AF=0.292 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 15991434 SNP-3.15990080. C A . PASS AR2=1;DR2=1;AF=0.292 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15997983 SNP-3.15996629. C A . PASS AR2=0.999;DR2=0.999;AF=0.255 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.003,0.078,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 15998144 SNP-3.15996790. C A . PASS AR2=0.975;DR2=0.981;AF=0.353 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.238:0.775,0.211,0.014 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.178:0.828,0.165,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.142:0.865,0.128,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.836,0.157,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.272:0.744,0.239,0.016 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.862,0.135,0.003 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.267:0.758,0.218,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.802:0.009,0.181,0.81 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.004,0.125,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.004,0.123,0.873 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.374:0.656,0.314,0.03 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.522:0.543,0.392,0.065 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.739,0.239,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.844,0.15,0.005 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.312:0.717,0.254,0.029 0|0:0:1,0,0 0|0:0.36:0.665,0.311,0.024 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.816,0.173,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.164:0.846,0.144,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.896,0.103,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.913:0.001,0.085,0.914 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 +3 16000772 SNP-3.15999418. A G . PASS AR2=0.99;DR2=0.992;AF=0.335 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.751:0.017,0.215,0.768 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.134:0.057,0.751,0.191 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.819:0.007,0.168,0.825 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.003,0.081,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.005,0.113,0.882 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.87:0.005,0.12,0.875 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.001,0.074,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.421:0.032,0.515,0.453 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.829:0.006,0.158,0.835 1|1:1.752:0.019,0.211,0.771 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16001391 SNP-3.16000037. A G . PASS AR2=0.983;DR2=0.985;AF=0.338 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.829:0.008,0.154,0.838 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.153:0.847,0.153,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.894,0.1,0.006 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.779:0.013,0.194,0.792 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:1.858:0.004,0.134,0.862 1|1:2:0,0,1 1|1:1.694:0.027,0.252,0.721 1|1:1.902:0.001,0.095,0.903 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.003,0.114,0.883 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.125:0.877,0.121,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.154:0.853,0.14,0.007 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.127:0.879,0.116,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.887,0.109,0.004 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.903,0.095,0.003 0|1:1.016:0.06,0.864,0.076 0|0:0.2:0.809,0.181,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.166:0.84,0.153,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.739:0.017,0.227,0.756 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.85,0.142,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.871:0.005,0.12,0.876 1|1:2:0,0,1 1|1:1.831:0.005,0.158,0.836 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16001554 SNP-3.16000200. A G . PASS AR2=0.996;DR2=0.997;AF=0.389 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.104:0.896,0.104,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.994:0.018,0.97,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.691:0.002,0.306,0.692 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.001,0.149,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 +3 16012630 SNP-3.16011276. A G . PASS AR2=0.981;DR2=0.985;AF=0.349 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.002,0.099,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.69:0.031,0.249,0.721 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:1.75:0.022,0.205,0.773 1|1:1.98:0,0.02,0.98 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:1.775:0.006,0.213,0.781 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:1.846:0.003,0.149,0.848 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.026,0.264,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0,0.065,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|0:1.383:0.079,0.459,0.462 1|1:1.957:0,0.042,0.957 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.008,0.11,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|0:1.111:0.027,0.836,0.138 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.905:0.002,0.091,0.907 1|1:1.793:0.013,0.181,0.806 1|1:1.761:0.012,0.214,0.773 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:1.716:0.021,0.243,0.737 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.015,0.154,0.831 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16012660 SNP-3.16011306. C A . PASS AR2=0.999;DR2=0.999;AF=0.269 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16019024 SNP-3.16017670. A G . PASS AR2=0.98;DR2=0.982;AF=0.37 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.055,0 1|1:2:0,0,1 1|1:1.875:0.005,0.114,0.88 1|1:1.877:0.003,0.118,0.879 1|1:1.87:0.004,0.121,0.875 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.905:0.003,0.09,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.004,0.151,0.845 1|1:1.855:0.004,0.138,0.858 1|1:1.951:0,0.049,0.951 1|1:1.819:0.007,0.168,0.825 1|1:2:0,0,1 1|1:1.859:0.004,0.132,0.863 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.909,0.091,0.001 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 0|0:0.08:0.921,0.078,0.001 1|1:1.994:0,0.006,0.994 0|0:0.058:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.998:0.019,0.964,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.842:0.006,0.147,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.004,0.127,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.029:0.04,0.892,0.068 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.183:0.006,0.805,0.189 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 1|1:1.903:0.006,0.086,0.909 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.011,0.196,0.793 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.789:0.01,0.19,0.799 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.875:0.005,0.115,0.88 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.003,0.076,0.921 1|1:1.812:0.005,0.178,0.817 0|0:0:1,0,0 1|1:1.949:0,0.051,0.949 1|1:1.902:0.002,0.094,0.904 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.818:0.007,0.169,0.824 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.743:0.018,0.22,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.769:0.008,0.215,0.777 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16019413 SNP-3.16018059. C A . PASS AR2=0.988;DR2=0.989;AF=0.322 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.813,0.176,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.11:0.894,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.816,0.176,0.008 0|0:0.075:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.908,0.09,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.135:0.869,0.127,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.937,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.888,0.108,0.004 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.181:0.827,0.165,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.789,0.2,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.838,0.157,0.005 0|0:0.1:0.905,0.091,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.145:0.862,0.131,0.007 0|0:0.179:0.829,0.162,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 16020114 SNP-3.16018760. A G . PASS AR2=0.97;DR2=0.975;AF=0.39 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0.244:0.776,0.204,0.02 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|0:0.22:0.791,0.197,0.011 0|0:0.309:0.716,0.26,0.024 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.177:0.829,0.165,0.006 0|0:0.242:0.773,0.212,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.837,0.157,0.007 1|0:1.016:0.084,0.816,0.1 0|0:0:1,0,0 0|0:0.156:0.85,0.143,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.851,0.142,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.853,0.14,0.006 0|0:0.184:0.824,0.168,0.008 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.176,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.914:0.228,0.629,0.142 0|0:0:1,0,0 0|0:0.13:0.874,0.122,0.004 0|0:0:1,0,0 1|0:1.031:0.17,0.629,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.202:0.808,0.182,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.002,0.036,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.153:0.855,0.137,0.008 0|0:0.244:0.772,0.212,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.855,0.138,0.007 0|0:0:1,0,0 0|0:0.217:0.794,0.196,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.177:0.832,0.16,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.459:0.635,0.27,0.094 0|0:0.192:0.816,0.177,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.351:0.68,0.288,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.289:0.735,0.242,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.17:0.842,0.146,0.012 0|0:0.301:0.729,0.242,0.029 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16021654 SNP-3.16020300. A G . PASS AR2=0.972;DR2=0.977;AF=0.289 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.018,0.25,0.732 1|1:2:0,0,1 1|1:1.722:0.02,0.237,0.743 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.01,0.149,0.841 1|0:1.512:0.06,0.368,0.572 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.202:0.174,0.45,0.376 1|1:1.736:0.019,0.227,0.755 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.836:0.006,0.152,0.842 1|1:1.694:0.021,0.264,0.715 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:1.912:0.002,0.085,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.026,0.312,0.662 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.605:0.415,0.565,0.02 0|0:0:1,0,0 1|1:1.86:0.005,0.131,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.018,0.228,0.754 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.004,0.11,0.886 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.718:0.02,0.243,0.737 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.018,0.238,0.744 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.675:0.032,0.261,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.907:0.002,0.089,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.008,0.17,0.822 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.853:0.008,0.131,0.861 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16022203 SNP-3.16020849. A G . PASS AR2=0.977;DR2=0.979;AF=0.308 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.86:0.005,0.13,0.865 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.863:0.005,0.127,0.868 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.819:0.008,0.165,0.827 1|1:2:0,0,1 0|1:0.939:0.071,0.919,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.008,0.157,0.836 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.005,0.136,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.006,0.142,0.851 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.004,0.089,0.908 1|1:1.836:0.007,0.15,0.843 0|0:0.012:0.988,0.012,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 1|1:1.869:0.005,0.122,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.004,0.093,0.904 0|0:0:1,0,0 1|1:1.848:0.006,0.141,0.853 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.732:0.269,0.73,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.761:0.239,0.761,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.005,0.136,0.859 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.848:0.006,0.14,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.847:0.006,0.141,0.853 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.007,0.146,0.847 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.006,0.153,0.841 1|1:1.817:0.009,0.165,0.826 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.003,0.08,0.917 1|1:1.855:0.005,0.134,0.86 1|1:1.874:0.005,0.116,0.879 1|1:2:0,0,1 1|1:1.871:0.005,0.119,0.876 1|1:2:0,0,1 1|1:1.877:0.004,0.115,0.881 1|1:1.872:0.005,0.118,0.877 1|1:2:0,0,1 1|1:1.838:0.007,0.148,0.845 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.016,0.2,0.784 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.811:0.008,0.173,0.819 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.851:0.006,0.138,0.856 +3 16023464 SNP-3.16022110. C A . PASS AR2=0.9;DR2=0.926;AF=0.382 GT:DS:GP 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.736:0.009,0.247,0.745 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.368:0.665,0.301,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.012:0.264,0.46,0.276 0|0:0.344:0.686,0.284,0.03 0|0:0.239:0.78,0.201,0.019 0|0:0:1,0,0 0|0:0.295:0.728,0.249,0.023 0|0:0.3:0.71,0.281,0.009 0|0:0:1,0,0 0|0:0.218:0.803,0.176,0.021 0|0:0:1,0,0 0|0:0.415:0.623,0.338,0.039 1|1:2:0,0,1 0|0:0.32:0.706,0.268,0.026 0|0:0.282:0.741,0.237,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.411:0.631,0.328,0.041 0|0:0.386:0.644,0.326,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.714,0.265,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.309:0.718,0.256,0.026 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.752:0.017,0.214,0.769 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.69:0.027,0.256,0.717 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.246:0.769,0.216,0.015 1|1:2:0,0,1 1|1:1.793:0.012,0.183,0.805 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.578:0.502,0.418,0.08 1|1:1.852:0.008,0.133,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.589:0.029,0.352,0.619 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.64:0.026,0.308,0.666 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.826:0.012,0.151,0.838 0|0:0:1,0,0 0|1:0.952:0.177,0.693,0.13 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.289:0.73,0.251,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.654:0.031,0.283,0.686 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.817:0.011,0.162,0.828 1|1:2:0,0,1 1|1:1.472:0.073,0.383,0.544 1|1:1.869:0.008,0.115,0.877 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.359:0.674,0.292,0.033 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.528:0.063,0.345,0.592 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.542:0.525,0.408,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.232:0.787,0.194,0.019 0|0:0:1,0,0 0|0:0.301:0.724,0.252,0.025 0|0:0:1,0,0 0|0:0.219:0.794,0.192,0.013 0|0:0:1,0,0 1|1:1.427:0.097,0.379,0.524 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0.272:0.748,0.232,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.416:0.625,0.335,0.041 0|0:0:1,0,0 0|0:0.365:0.667,0.301,0.032 0|0:0:1,0,0 0|1:0.813:0.313,0.561,0.126 1|0:0.625:0.483,0.41,0.107 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.439:0.085,0.391,0.524 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.009,0.12,0.871 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.357:0.673,0.297,0.03 0|0:0.477:0.576,0.372,0.053 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.226:0.79,0.195,0.015 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.802,0.187,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.443:0.602,0.353,0.045 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.409:0.109,0.372,0.518 0|0:0.294:0.721,0.265,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.02,0.235,0.745 1|1:2:0,0,1 1|1:1.873:0.008,0.11,0.881 1|1:1.271:0.268,0.193,0.539 0|0:0:1,0,0 1|1:1.674:0.031,0.264,0.705 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.767:0.014,0.204,0.781 0|0:0:1,0,0 0|0:0.4:0.648,0.304,0.048 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.737:0.016,0.232,0.753 0|0:0:1,0,0 +3 16026232 SNP-3.16024878. A G . PASS AR2=0.999;DR2=0.999;AF=0.389 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.261:0.001,0.737,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16030064 SNP-3.16028710. A G . PASS AR2=0.98;DR2=0.984;AF=0.394 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.14:0.864,0.132,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.172:0.839,0.15,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.347:0.681,0.292,0.027 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.546:0.507,0.44,0.053 0|0:0:1,0,0 0|0:0.218:0.795,0.192,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.231:0.781,0.208,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.862:0.007,0.124,0.869 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.001,0.061,0.937 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.287:0.736,0.241,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.838,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.208:0.802,0.188,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.713,0.264,0.023 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.174:0.837,0.151,0.011 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.212:0.801,0.187,0.013 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.204:0.807,0.183,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.189:0.82,0.17,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.209:0.803,0.185,0.012 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16031042 SNP-3.16029688. A G . PASS AR2=0.998;DR2=0.999;AF=0.32 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.729:0.272,0.727,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16031456 SNP-3.16030102. A G . PASS AR2=0.999;DR2=0.999;AF=0.321 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|1:1.016:0,0.984,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.861:0,0.139,0.861 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16034617 SNP-3.16033263. A G . PASS AR2=0.991;DR2=0.991;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.016,0.15,0.834 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.926,0.071,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.052:0.948,0.051,0.001 0|1:1:0,1,0 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|0:0.041:0.959,0.041,0 0|0:0.07:0.931,0.068,0.001 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.002,0.082,0.916 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.003,0.088,0.909 0|0:0.082:0.92,0.077,0.002 0|0:0:1,0,0 1|1:1.925:0.002,0.072,0.926 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0.059:0.941,0.058,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.931 0|0:0:1,0,0 1|1:1.953:0,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.094,0.904 1|1:1.959:0.001,0.04,0.959 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.002,0.073,0.925 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.049:0.952,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.002,0.069,0.93 0|0:0.086:0.914,0.086,0 0|0:0:1,0,0 +3 16035032 SNP-3.16033678. A G . PASS AR2=0.902;DR2=0.929;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.86,0.136,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.197:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0.311:0.714,0.261,0.025 1|1:1.544:0.066,0.323,0.61 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.376:0.101,0.423,0.477 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.504:0.061,0.374,0.565 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.395:0.085,0.436,0.48 1|1:1.772:0.017,0.195,0.788 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.433:0.084,0.399,0.517 0|0:0:1,0,0 1|1:1.509:0.059,0.373,0.568 1|1:1.64:0.029,0.303,0.668 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.249:0.763,0.224,0.012 0|0:0:1,0,0 0|0:0.152:0.854,0.14,0.006 1|1:1.54:0.052,0.355,0.593 0|0:0:1,0,0 1|1:1.787:0.016,0.18,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.398:0.641,0.32,0.039 0|0:0.185:0.822,0.17,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.897,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0.024,0.359,0.617 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.512:0.058,0.371,0.571 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.775,0.213,0.012 1|0:1.364:0.11,0.416,0.474 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.653,0.332,0.015 1|1:1.411:0.085,0.419,0.496 0|0:0.337:0.693,0.277,0.03 0|0:0.16:0.849,0.141,0.009 0|0:0.336:0.694,0.275,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.843,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.869,0.125,0.006 0|0:0:1,0,0 0|0:0.189:0.818,0.175,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.314:0.712,0.262,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.084:0.919,0.077,0.004 0|0:0.304:0.715,0.265,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.734,0.244,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 1|1:1.575:0.047,0.331,0.622 0|0:0.142:0.865,0.128,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.881,0.112,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.885,0.111,0.005 1|0:0.281:0.728,0.264,0.009 0|0:0.253:0.765,0.218,0.018 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.504:0.061,0.374,0.565 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.515:0.056,0.374,0.571 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.187:0.821,0.172,0.007 0|0:0:1,0,0 1|0:0.438:0.582,0.397,0.02 0|0:0.268:0.742,0.248,0.01 1|1:1.773:0.014,0.199,0.787 1|1:2:0,0,1 0|0:0.218:0.792,0.197,0.01 1|1:2:0,0,1 0|1:1.515:0.057,0.37,0.573 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.727,0.254,0.019 1|1:2:0,0,1 1|1:1.352:0.11,0.428,0.462 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.277:0.732,0.259,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0.253:0.765,0.218,0.018 1|1:2:0,0,1 1|1:1.549:0.052,0.347,0.601 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.576:0.047,0.33,0.623 1|1:1.733:0.025,0.218,0.757 0|0:0:1,0,0 1|1:1.684:0.022,0.272,0.706 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.875:0.009,0.107,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.872,0.119,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.366:0.667,0.299,0.034 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.733:0.029,0.209,0.762 0|0:0.435:0.596,0.372,0.031 0|0:0:1,0,0 +3 16038010 SNP-3.16036656. A G . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16039908 SNP-3.16038554. C A . PASS AR2=0.998;DR2=0.999;AF=0.291 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.708:0,0.292,0.708 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0,0.073,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16040124 SNP-3.16038770. A G . PASS AR2=0.999;DR2=0.999;AF=0.358 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.951 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 +3 16041706 SNP-3.16040352. C A . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16041891 SNP-3.16040537. A G . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16043518 SNP-3.16042164. C A . PASS AR2=0.999;DR2=0.999;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.912,0.086,0.002 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16044322 SNP-3.16042968. A G . PASS AR2=0.995;DR2=0.996;AF=0.339 GT:DS:GP 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.008:0,0.991,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.917,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.661,0.339,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.081,0.002 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16046247 SNP-3.16044893. A G . PASS AR2=0.992;DR2=0.993;AF=0.44 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.918:0.188,0.706,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.004,0.151,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.074:0.165,0.596,0.239 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.26:0.138,0.465,0.397 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.074:0.055,0.816,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.002,0.142,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16049910 SNP-3.16048556. A G . PASS AR2=0.998;DR2=0.998;AF=0.362 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.031:0,0.969,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 1|1:1.985:0,0.015,0.985 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16051156 SNP-3.16049802. A G . 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A G . PASS AR2=0.998;DR2=0.999;AF=0.347 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.004,0.283,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16052936 SNP-3.16051582. A G . PASS AR2=0.994;DR2=0.996;AF=0.234 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 1|1:1.966:0.001,0.033,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.904:0.003,0.09,0.907 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.912:0.002,0.084,0.914 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.533:0.472,0.523,0.005 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.002,0.082,0.916 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.05,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16053713 SNP-3.16052359. A G . PASS AR2=0.984;DR2=0.987;AF=0.238 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.647:0.407,0.539,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.129,0.004 0|0:0.119:0.885,0.111,0.004 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.771,0.211,0.017 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.154:0.852,0.143,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.074:0.006,0.914,0.08 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.15:0.856,0.139,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.318:0.024,0.634,0.342 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.321:0.681,0.317,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.239:0.762,0.238,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16054009 SNP-3.16052655. A G . PASS AR2=0.993;DR2=0.995;AF=0.337 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.221:0.79,0.2,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.854,0.142,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.278:0.737,0.247,0.016 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.319:0.701,0.278,0.021 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.273:0.734,0.259,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16056312 SNP-3.16054958. C A . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16057891 SNP-3.16056537. A G . PASS AR2=1;DR2=1;AF=0.323 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16058615 SNP-3.16057261. A G . PASS AR2=1;DR2=1;AF=0.327 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16059332 SNP-3.16057978. C A . PASS AR2=0.999;DR2=0.999;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16059864 SNP-3.16058510. A G . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16070188 SNP-3.16068834. A G . PASS AR2=0.998;DR2=0.999;AF=0.231 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.756:0.001,0.242,0.757 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16072044 SNP-3.16070690. C A . PASS AR2=0.996;DR2=0.997;AF=0.293 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.966:0,0.033,0.966 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.001,0.074,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|1:1:0,1,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.777,0.217,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16074898 SNP-3.16073544. A G . PASS AR2=0.997;DR2=0.997;AF=0.304 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.653:0.017,0.314,0.669 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.009,0.154,0.837 1|1:1.885:0.006,0.103,0.891 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16075626 SNP-3.16074272. C A . PASS AR2=0.995;DR2=0.996;AF=0.243 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.926:0.255,0.564,0.181 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.124:0.094,0.687,0.218 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16075691 SNP-3.16074337. A G . PASS AR2=0.989;DR2=0.992;AF=0.221 GT:DS:GP 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.946,0.054,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.028:0.972,0.028,0 0|1:0.59:0.468,0.474,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.84,0.16,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.487:0.029,0.455,0.516 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.164:0.106,0.625,0.27 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16076230 SNP-3.16074876. A G . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16076306 SNP-3.16074952. C A . PASS AR2=0.99;DR2=0.993;AF=0.306 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.121:0.881,0.117,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.681:0.34,0.639,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.032:0.968,0.032,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.381:0.619,0.381,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.558:0.469,0.504,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.081:0.92,0.078,0.001 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.76,0.239,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16078859 SNP-3.16077505. A G . 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A G . PASS AR2=0.97;DR2=0.978;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.195:0.814,0.176,0.009 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1.032:0.2,0.568,0.232 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.936:0,0.064,0.936 0|0:0.076:0.928,0.069,0.004 0|0:0:1,0,0 0|1:1.501:0.046,0.408,0.546 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.95,0.047,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.88,0.12,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.865,0.129,0.006 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.061,0 0|0:0:1,0,0 0|0:0.131:0.878,0.112,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0.138:0.886,0.09,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0.124:0.877,0.122,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0.083:0.918,0.081,0.001 0|0:0.281:0.736,0.248,0.016 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.078:0.308,0.306,0.386 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0.102:0.902,0.094,0.004 0|0:0.138:0.869,0.125,0.006 0|0:0:1,0,0 +3 16081791 SNP-3.16080437. C A . PASS AR2=0.98;DR2=0.981;AF=0.397 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.791:0.369,0.471,0.16 1|0:1:0,1,0 1|0:1:0,1,0 1|1:0.98:0.26,0.499,0.24 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.855:0.368,0.409,0.223 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.881:0.315,0.488,0.196 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.779:0.377,0.467,0.156 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.98:0.26,0.499,0.24 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.983:0.272,0.473,0.255 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16081893 SNP-3.16080539. C A . PASS AR2=0.987;DR2=0.989;AF=0.251 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.902:0.003,0.092,0.905 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.007,0.124,0.869 1|1:2:0,0,1 0|0:0.436:0.564,0.435,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.01,0.151,0.839 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.035,0.965 1|1:1.795:0.01,0.185,0.805 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.899:0.104,0.893,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.977:0.068,0.886,0.046 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.924:0.004,0.068,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.859:0.007,0.126,0.867 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.003,0.217,0.78 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.124:0.055,0.765,0.179 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.002,0.199,0.799 0|0:0:1,0,0 +3 16082458 SNP-3.16081104. A G . PASS AR2=1;DR2=1;AF=0.319 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16084305 SNP-3.16082951. C A . PASS AR2=0.907;DR2=0.923;AF=0.406 GT:DS:GP 0|0:0.559:0.514,0.412,0.073 0|0:0.289:0.711,0.289,0 0|0:0.317:0.706,0.271,0.023 0|0:0.216:0.793,0.197,0.009 1|1:2:0,0,1 0|1:1.076:0.213,0.499,0.289 1|1:1.812:0.009,0.171,0.82 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.073:0.237,0.453,0.31 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.824:0.363,0.45,0.187 0|1:0.417:0.583,0.417,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.159:0.131,0.578,0.29 1|1:1.155:0.146,0.553,0.301 0|0:0:1,0,0 0|0:0.225:0.786,0.204,0.011 0|0:0.236:0.774,0.216,0.01 0|0:0.223:0.789,0.199,0.012 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.209:0.799,0.192,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.273:0.74,0.247,0.013 0|0:0.227:0.781,0.211,0.008 1|0:0.952:0.29,0.469,0.241 0|0:0.052:0.948,0.051,0.001 0|1:1.098:0.123,0.656,0.221 0|0:0.551:0.528,0.393,0.079 0|0:0.297:0.732,0.24,0.028 0|0:0:1,0,0 0|1:0.882:0.318,0.482,0.2 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.043:0.225,0.506,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.064:0.209,0.519,0.272 0|1:0.546:0.546,0.361,0.092 1|0:0.759:0.377,0.487,0.136 0|0:0.062:0.94,0.058,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.944:0.169,0.718,0.113 0|0:0:1,0,0 0|1:1.022:0.248,0.483,0.269 1|0:0.584:0.504,0.409,0.087 0|0:0.073:0.927,0.072,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.668:0.027,0.278,0.695 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0.001,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0.001,0.997,0.001 0|0:0:1,0,0 0|0:0.244:0.76,0.236,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.7:0.3,0.7,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.724:0.016,0.245,0.739 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.501:0.569,0.36,0.07 0|0:0.278:0.744,0.234,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 1|1:1.215:0.151,0.483,0.366 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.829:0.356,0.459,0.185 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.473:0.118,0.292,0.591 1|1:2:0,0,1 1|1:1.878:0.006,0.111,0.884 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.06:0.192,0.555,0.253 1|1:2:0,0,1 0|0:0.324:0.705,0.267,0.028 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 1|0:1.08:0.215,0.49,0.295 0|0:0:1,0,0 0|0:0.061:0.941,0.057,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.904,0.091,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.885,0.106,0.008 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.716:0.024,0.235,0.74 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.8:0.375,0.45,0.175 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.782,0.202,0.016 0|0:0.568:0.504,0.423,0.072 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.006,0.134,0.86 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.753:0.412,0.423,0.165 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.381:0.655,0.309,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16085089 SNP-3.16083735. C A . PASS AR2=0.992;DR2=0.994;AF=0.398 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.85,0.145,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.729,0.241,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.332:0.682,0.305,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.238:0.775,0.212,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.245:0.763,0.229,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.875,0.123,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16085268 SNP-3.16083914. A G . PASS AR2=0.976;DR2=0.982;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.031,0.001 0|0:0.024:0.976,0.023,0 0|0:0.106:0.895,0.105,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.348:0.668,0.315,0.016 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.051:0.949,0.05,0.001 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.725,0.266,0.009 0|0:0.006:0.994,0.006,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.884,0.113,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.156:0.849,0.145,0.005 0|0:0:1,0,0 0|0:0.153:0.851,0.145,0.004 0|0:0.389:0.62,0.371,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.697:0.442,0.419,0.139 0|0:0.18:0.825,0.17,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.218:0.795,0.193,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.064:0.939,0.058,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.153:0.857,0.133,0.01 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|0:0.641:0.383,0.594,0.023 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.944,0.055,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16085337 SNP-3.16083983. A G . PASS AR2=0.981;DR2=0.986;AF=0.331 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.936:0.001,0.061,0.937 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.575:0.532,0.361,0.107 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.596:0.498,0.407,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.949:0,0.05,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.57:0.468,0.494,0.038 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.829,0.161,0.01 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.22:0.792,0.196,0.012 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.083,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.104:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.794,0.189,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0.207:0.806,0.182,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.898,0.099,0.003 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16086121 SNP-3.16084767. A G . PASS AR2=0.998;DR2=0.998;AF=0.484 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.005,0.118,0.877 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.005,0.096,0.899 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.841:0.006,0.146,0.847 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 +3 16087398 SNP-3.16086044. A G . PASS AR2=0.964;DR2=0.97;AF=0.287 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.778:0.011,0.2,0.789 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.151:0.854,0.142,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.216:0.784,0.216,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.712:0.024,0.24,0.736 0|0:0:1,0,0 1|1:1.773:0.019,0.188,0.792 0|0:0:1,0,0 1|1:1.858:0.003,0.136,0.861 1|1:2:0,0,1 1|1:1.822:0.007,0.163,0.83 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.463:0.553,0.43,0.016 1|1:2:0,0,1 1|1:1.687:0.014,0.285,0.701 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.041,0.254,0.705 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.176:0.83,0.163,0.007 0|0:0:1,0,0 0|0:0.141:0.865,0.129,0.006 1|1:2:0,0,1 1|1:1.801:0.009,0.181,0.81 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.912:0,0.088,0.912 1|1:1.838:0.008,0.146,0.846 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.002,0.159,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0.005,0.16,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.002 0|0:0.145:0.862,0.132,0.006 1|1:1.959:0,0.04,0.96 0|0:0.157:0.85,0.143,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.102,0.004 0|0:0.143:0.864,0.13,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.694:0.025,0.257,0.719 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.157:0.85,0.143,0.007 0|0:0.066:0.935,0.064,0.001 1|1:1.758:0.015,0.212,0.773 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.859,0.138,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.209:0.803,0.186,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.005,0.159,0.835 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.169:0.838,0.155,0.007 0|0:0.115:0.889,0.106,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.015,0.198,0.786 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0.175:0.826,0.173,0.001 1|1:2:0,0,1 +3 16088494 SNP-3.16087140. A G . PASS AR2=0.995;DR2=0.995;AF=0.313 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:0.953:0.27,0.507,0.223 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.85:0.339,0.471,0.189 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 +3 16092466 SNP-3.16091112. A G . PASS AR2=0.908;DR2=0.935;AF=0.218 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.305:0.719,0.256,0.024 0|0:0.122:0.887,0.104,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.467:0.07,0.393,0.537 1|1:1.431:0.081,0.407,0.512 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.157:0.844,0.154,0.002 1|1:2:0,0,1 0|0:0.103:0.905,0.086,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.431:0.081,0.407,0.512 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.739,0.248,0.014 1|0:1.431:0.081,0.407,0.512 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.747,0.231,0.022 0|0:0:1,0,0 0|0:0.255:0.755,0.235,0.01 0|0:0.191:0.818,0.174,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.761,0.227,0.012 0|0:0.251:0.756,0.238,0.007 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.472:0.581,0.366,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.904,0.096,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.804,0.182,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.873,0.122,0.005 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.069,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.431:0.081,0.407,0.512 0|0:0.431:0.625,0.319,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.17:0.834,0.161,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.431:0.081,0.407,0.512 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.901,0.095,0.005 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.335:0.696,0.274,0.031 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.601:0.499,0.4,0.101 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.431:0.081,0.407,0.512 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.718,0.267,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.891,0.107,0.002 0|0:0.517:0.551,0.381,0.068 0|0:0.228:0.782,0.209,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.906,0.093,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.891,0.103,0.006 0|0:0:1,0,0 0|0:0.049:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.864,0.129,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.081:0.924,0.071,0.005 1|1:2:0,0,1 0|0:0.342:0.683,0.291,0.026 0|0:0:1,0,0 1|1:1.431:0.081,0.407,0.512 0|0:0.117:0.89,0.102,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.431:0.081,0.407,0.512 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.047,0.001 0|0:0:1,0,0 1|1:1.431:0.081,0.407,0.512 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16097968 SNP-3.16096614. A G . PASS AR2=0.92;DR2=0.941;AF=0.362 GT:DS:GP 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.695,0.28,0.025 0|0:0.403:0.638,0.321,0.041 0|0:0.405:0.636,0.322,0.042 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0.037:0.964,0.036,0 0|0:0.389:0.65,0.311,0.039 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|1:0.402:0.639,0.32,0.041 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|1:0.402:0.639,0.32,0.041 0|0:0.413:0.631,0.326,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.664:0.005,0.325,0.67 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.402:0.639,0.32,0.041 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|1:0.694:0.319,0.667,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.939,0.06,0 1|1:1.998:0,0.002,0.998 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0.009:0.991,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.084:0.917,0.083,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.873:0.289,0.549,0.162 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 1|1:2:0,0,1 1|1:1.964:0.002,0.033,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0.054:0.947,0.052,0.001 0|0:0.402:0.639,0.32,0.041 0|0:0.185:0.854,0.108,0.039 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|0:0.407:0.635,0.323,0.042 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 1|1:1.969:0.001,0.03,0.969 0|0:0.402:0.639,0.32,0.041 0|0:0.332:0.697,0.275,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.633:0.449,0.468,0.082 1|1:2:0,0,1 1|1:1.928:0.002,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16099002 SNP-3.16097648. A G . PASS AR2=0.984;DR2=0.989;AF=0.495 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.005,0.116,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.007,0.141,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.001,0.072,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.56:0.454,0.533,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.484:0.52,0.475,0.005 0|0:0.016:0.984,0.016,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.784,0.215,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.911,0.089,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.69:0.024,0.262,0.714 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.67:0.463,0.404,0.133 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.83,0.156,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.145:0.858,0.139,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.888:0.002,0.109,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16100900 SNP-3.16099546. C A . PASS AR2=0.942;DR2=0.956;AF=0.303 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.433:0.088,0.392,0.521 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.298:0.127,0.448,0.425 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|1:1.399:0.088,0.424,0.487 0|0:0.098:0.905,0.092,0.003 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.064:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.557:0.058,0.327,0.615 0|1:1.34:0.103,0.454,0.443 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.68:0.01,0.301,0.69 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.313:0.12,0.447,0.433 0|0:0:1,0,0 1|0:1.206:0.157,0.479,0.363 1|0:0.921:0.241,0.597,0.162 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.722:0.002,0.274,0.724 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.421:0.083,0.413,0.504 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.847,0.142,0.011 1|1:1.403:0.077,0.444,0.48 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.322:0.114,0.449,0.436 0|1:1.563:0.051,0.336,0.614 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.297:0.121,0.462,0.418 0|0:0:1,0,0 1|1:1.572:0.019,0.391,0.591 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.951,0.047,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0.097:0.906,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.722:0.018,0.241,0.74 1|0:1.104:0.185,0.526,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0.001,0.03,0.97 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.021,0.231,0.748 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.002,0.05,0.949 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.004,0.106,0.89 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.533:0.044,0.378,0.577 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.111:0.889,0.11,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16102230 SNP-3.16100876. A G . PASS AR2=0.997;DR2=0.997;AF=0.488 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|1:1:0,1,0 0|0:0.102:0.9,0.098,0.002 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.265:0.001,0.732,0.266 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.991:0.018,0.972,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.071:0.93,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.135:0.881,0.104,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16109853 SNP-3.16108499. C A . PASS AR2=0.993;DR2=0.995;AF=0.425 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.41:0.642,0.305,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.8,0.187,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.525:0.475,0.525,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.88,0.117,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16110799 SNP-3.16109445. A G . PASS AR2=0.967;DR2=0.971;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0.149:0.856,0.14,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.796,0.197,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.126:0.877,0.12,0.003 0|0:0.098:0.904,0.094,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.114:0.89,0.105,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.182:0.827,0.163,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.137:0.871,0.122,0.007 0|0:0.302:0.714,0.27,0.016 1|1:2:0,0,1 0|0:0.083:0.918,0.08,0.002 0|0:0.09:0.912,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.146,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.89,0.107,0.004 0|0:0.117:0.886,0.112,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.131:0.873,0.123,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0.097:0.904,0.094,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.876,0.121,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.858,0.136,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.854,0.141,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.206:0.806,0.182,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.159,0.008 0|0:0.289:0.729,0.253,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.844,0.148,0.007 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.101:0.902,0.095,0.003 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.099:0.904,0.092,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.849,0.143,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.149:0.855,0.14,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.199:0.814,0.174,0.013 1|1:2:0,0,1 0|0:0.072:0.931,0.065,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.104:0.9,0.095,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16111699 SNP-3.16110345. A G . PASS AR2=0.986;DR2=0.989;AF=0.443 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.777,0.202,0.021 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.271:0.743,0.242,0.015 0|0:0.203:0.806,0.186,0.009 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.329:0.091,0.49,0.42 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.636:0.411,0.542,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.116:0.884,0.115,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.758,0.225,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.25:0.766,0.218,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.769,0.215,0.016 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.804,0.187,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.938:0.003,0.056,0.941 0|0:0:1,0,0 1|1:2:0,0,1 +3 16112054 SNP-3.16110700. C A . PASS AR2=0.989;DR2=0.991;AF=0.324 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.002:0.008,0.982,0.01 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.204:0.815,0.166,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.382:0.619,0.381,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.792:0.009,0.189,0.802 1|1:2:0,0,1 1|0:0.912:0.151,0.785,0.063 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.873:0.001,0.124,0.874 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.155:0.86,0.125,0.015 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.991:0.019,0.971,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.461:0.613,0.312,0.074 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16115076 SNP-3.16113722. A G . PASS AR2=0.964;DR2=0.974;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.148:0.862,0.127,0.01 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.935,0.062,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.003,0.135,0.862 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.258:0.755,0.232,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.769:0.337,0.557,0.106 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.147:0.863,0.127,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0.077:0.923,0.077,0 0|0:0.389:0.644,0.323,0.033 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.414:0.614,0.357,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.842,0.157,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.479:0.574,0.374,0.052 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.557:0.509,0.424,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 1|1:1.713:0.025,0.237,0.738 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.46:0.602,0.336,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.394:0.618,0.369,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.813,0.178,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.879,0.12,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.379:0.096,0.429,0.475 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.918,0.079,0.003 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.411:0.633,0.323,0.044 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:1.989:0,0.011,0.989 1|1:1.647:0.031,0.292,0.678 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16116032 SNP-3.16114678. A G . PASS AR2=0.84;DR2=0.882;AF=0.483 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.889:0.297,0.516,0.187 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.314:0.142,0.402,0.456 0|0:0:1,0,0 0|1:1.39:0.094,0.422,0.484 0|1:1.342:0.103,0.452,0.445 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.535:0.054,0.358,0.588 1|1:1.481:0.068,0.384,0.548 1|1:2:0,0,1 1|1:1.462:0.073,0.392,0.535 0|0:0:1,0,0 1|1:1.467:0.061,0.411,0.528 0|0:0:1,0,0 1|0:1.419:0.082,0.417,0.501 1|1:2:0,0,1 1|1:1.47:0.071,0.389,0.54 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.142:0.858,0.142,0 1|1:1.483:0.067,0.382,0.55 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.158:0.129,0.583,0.287 1|1:1.316:0.096,0.492,0.412 0|1:1.063:0.21,0.518,0.272 1|1:2:0,0,1 0|0:0.731:0.432,0.405,0.163 1|1:2:0,0,1 1|0:1.302:0.113,0.473,0.414 1|1:2:0,0,1 0|0:0.301:0.729,0.241,0.03 1|1:1.412:0.083,0.422,0.495 1|0:1.265:0.119,0.496,0.385 1|1:2:0,0,1 1|1:1.54:0.054,0.352,0.594 0|0:0:1,0,0 0|0:0.211:0.814,0.162,0.025 0|1:0.869:0.34,0.45,0.21 0|1:1.407:0.088,0.417,0.495 1|1:2:0,0,1 1|1:1.543:0.054,0.35,0.596 1|1:1.564:0.049,0.338,0.613 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.083:0.185,0.547,0.268 1|0:1.221:0.141,0.498,0.362 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.471:0.071,0.388,0.541 1|1:1.596:0.039,0.325,0.636 0|1:1.62:0.035,0.311,0.655 1|1:1.493:0.063,0.38,0.556 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.579:0.044,0.333,0.623 1|1:1.39:0.089,0.432,0.479 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.57:0.047,0.336,0.617 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.318:0.125,0.432,0.443 0|0:0:1,0,0 1|1:1.558:0.05,0.342,0.608 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.321:0.096,0.488,0.416 0|0:0:1,0,0 1|0:1.194:0.156,0.494,0.35 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.47:0.071,0.388,0.541 0|0:0:1,0,0 0|0:0.722:0.422,0.435,0.143 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.542:0.054,0.35,0.596 0|0:0:1,0,0 1|0:1.532:0.06,0.349,0.592 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.511:0.072,0.345,0.583 1|1:2:0,0,1 1|1:1.471:0.071,0.388,0.541 1|1:2:0,0,1 1|1:1.448:0.076,0.399,0.524 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|0:1.529:0.057,0.358,0.585 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.487:0.066,0.381,0.553 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.021,0.244,0.735 1|1:1.587:0.054,0.306,0.641 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.545:0.053,0.35,0.597 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.916:0.31,0.463,0.226 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.551:0.052,0.346,0.602 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.533:0.055,0.357,0.588 0|1:1.6:0.039,0.322,0.639 1|1:2:0,0,1 1|1:1.629:0.035,0.3,0.664 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.471:0.071,0.388,0.541 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.471:0.071,0.388,0.541 0|0:0:1,0,0 0|1:1.47:0.071,0.388,0.541 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.543:0.054,0.35,0.597 1|0:1.575:0.047,0.331,0.622 1|1:1.572:0.045,0.338,0.617 1|1:1.551:0.052,0.346,0.603 0|1:1.574:0.048,0.33,0.622 1|1:1.549:0.052,0.346,0.601 1|1:1.629:0.035,0.302,0.663 1|1:1.619:0.04,0.3,0.66 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.257:0.12,0.504,0.377 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.471:0.071,0.388,0.542 1|1:2:0,0,1 0|1:0.661:0.462,0.414,0.123 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.623:0.037,0.303,0.66 +3 16116761 SNP-3.16115407. A G . PASS AR2=0.934;DR2=0.948;AF=0.321 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.869,0.127,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.937:0.284,0.495,0.221 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.346:0.105,0.444,0.451 0|1:0.95:0.277,0.497,0.226 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.266:0.135,0.464,0.401 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.253:0.14,0.468,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.829,0.162,0.009 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.531:0.056,0.358,0.586 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.138:0.182,0.497,0.321 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.531:0.056,0.358,0.586 1|1:1.531:0.056,0.358,0.586 1|0:1.42:0.079,0.422,0.499 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.266:0.135,0.464,0.401 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.691,0.292,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.403:0.633,0.33,0.036 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.606:0.437,0.52,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.11:0.189,0.512,0.299 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|1:0.981:0.258,0.502,0.24 1|1:1.523:0.057,0.362,0.58 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.618:0.046,0.29,0.664 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.53:0.056,0.358,0.586 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.937:0.284,0.495,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.266:0.135,0.464,0.401 1|1:1.266:0.135,0.464,0.401 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.937:0.284,0.495,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.893,0.102,0.005 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16117174 SNP-3.16115820. A G . PASS AR2=0.893;DR2=0.916;AF=0.373 GT:DS:GP 1|0:0.879:0.316,0.489,0.195 0|0:0:1,0,0 0|1:0.769:0.334,0.563,0.103 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.272:0.133,0.463,0.405 0|0:0.896:0.305,0.494,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.205:0.155,0.486,0.36 0|1:1.266:0.135,0.463,0.402 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.904:0.301,0.494,0.205 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.237:0.143,0.476,0.381 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.703:0.397,0.503,0.1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.209:0.147,0.498,0.355 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.75:0.38,0.489,0.131 0|1:1.335:0.106,0.453,0.441 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.404:0.086,0.424,0.49 0|0:0.816:0.35,0.485,0.166 0|1:1.269:0.123,0.485,0.392 0|0:0:1,0,0 1|0:0.935:0.258,0.55,0.193 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.895:0.306,0.494,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.717,0.283,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.28:0.721,0.279,0 0|0:0.35:0.65,0.35,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.478:0.069,0.385,0.546 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0.001,0.027,0.972 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.266:0.135,0.464,0.401 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.277:0.131,0.461,0.408 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.52:0.056,0.368,0.576 1|1:1.27:0.134,0.462,0.404 0|0:0.505:0.575,0.345,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.663:0.448,0.441,0.111 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.04:0.224,0.513,0.263 1|0:1.426:0.083,0.409,0.508 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.906:0.299,0.495,0.206 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.663:0.448,0.441,0.111 1|1:2:0,0,1 0|1:1.105:0.22,0.455,0.325 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.266:0.135,0.464,0.401 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.485:0.067,0.381,0.552 1|1:1.483:0.067,0.382,0.55 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.474:0.07,0.386,0.544 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.483:0.067,0.382,0.55 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.895:0.306,0.494,0.201 1|0:0.895:0.306,0.494,0.201 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.484:0.067,0.382,0.551 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0.001,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.268:0.135,0.463,0.402 1|1:1.418:0.075,0.432,0.493 0|0:0:1,0,0 0|0:0.94:0.262,0.537,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16118924 SNP-3.16117570. A G . PASS AR2=1;DR2=1;AF=0.301 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16121614 SNP-3.16120260. C A . PASS AR2=0.999;DR2=0.999;AF=0.288 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 1|1:1.996:0,0.003,0.996 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.992:0.028,0.953,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16123637 SNP-3.16122283. A G . PASS AR2=0.989;DR2=0.99;AF=0.279 GT:DS:GP 1|1:1.868:0.006,0.121,0.873 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|1:1:0,1,0 0|0:0.045:0.955,0.044,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.001,0.134,0.865 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.001,0.071,0.927 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.051,0.947 1|1:1.871:0.005,0.119,0.876 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.145:0.855,0.145,0 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:1.911:0.002,0.085,0.913 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.003,0.11,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.944:0.001,0.053,0.946 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.876:0.003,0.117,0.879 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.898:0.003,0.096,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.003,0.122,0.874 0|0:0:1,0,0 1|1:1.92:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0 0|0:0.073:0.928,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.906:0.003,0.089,0.909 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16124670 SNP-3.16123316. A G . PASS AR2=0.987;DR2=0.99;AF=0.262 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.87,0.129,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.663:0.027,0.283,0.69 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.805:0.007,0.181,0.812 1|1:1.671:0.027,0.274,0.699 0|0:0.004:0.996,0.004,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.283:0.718,0.282,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.609:0.035,0.321,0.644 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.011,0.211,0.778 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.732:0.021,0.226,0.753 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16126350 SNP-3.16124996. C A . PASS AR2=0.992;DR2=0.994;AF=0.376 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.731:0,0.269,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.232:0.773,0.222,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.525:0.001,0.474,0.525 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.438:0.585,0.393,0.022 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.143:0.079,0.699,0.222 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16127787 SNP-3.16126433. A G . PASS AR2=0.982;DR2=0.986;AF=0.204 GT:DS:GP 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.893,0.105,0.001 0|0:0.317:0.707,0.27,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.715,0.257,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.185:0.088,0.64,0.273 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.856,0.14,0.004 0|0:0:1,0,0 0|0:0.239:0.776,0.208,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.01,0.149,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.462:0.583,0.372,0.045 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16128346 SNP-3.16126992. C A . PASS AR2=0.991;DR2=0.993;AF=0.397 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.994:0,0.006,0.994 1|1:1.929:0.001,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0,0.069,0.931 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0.041:0.961,0.038,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.799:0.201,0.799,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.337:0.689,0.286,0.025 0|0:0:1,0,0 0|0:0.146:0.855,0.143,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.81,0.18,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.771,0.216,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.205:0.807,0.18,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.918,0.081,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.831,0.161,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16131077 SNP-3.16129723. A G . PASS AR2=0.998;DR2=0.998;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.132:0.084,0.701,0.216 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16132391 SNP-3.16131037. A G . PASS AR2=0.975;DR2=0.983;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.3:0.02,0.66,0.32 1|0:1.312:0.014,0.661,0.325 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.831:0.269,0.632,0.099 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.314:0.014,0.659,0.327 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.308:0.013,0.665,0.322 1|1:2:0,0,1 0|1:1.303:0.012,0.672,0.315 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.312:0.014,0.661,0.325 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.305:0.013,0.67,0.318 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.263:0.016,0.706,0.279 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.48:0.083,0.354,0.563 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.35:0.106,0.438,0.456 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16133002 SNP-3.16131648. A G . PASS AR2=1;DR2=1;AF=0.342 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16135246 SNP-3.16133892. A G . PASS AR2=1;DR2=1;AF=0.278 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16135358 SNP-3.16134004. A G . PASS AR2=1;DR2=1;AF=0.272 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16139308 SNP-3.16137954. C A . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16140836 SNP-3.16139482. A G . PASS AR2=0.995;DR2=0.996;AF=0.394 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.562:0.005,0.428,0.567 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.004,0.115,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.266:0.026,0.683,0.292 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.843:0.006,0.144,0.849 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.006,0.144,0.85 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16142450 SNP-3.16141096. A G . PASS AR2=0.984;DR2=0.988;AF=0.362 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.013:0.171,0.646,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.26:0.011,0.718,0.271 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.847:0.343,0.467,0.19 0|0:0:1,0,0 0|0:0.602:0.504,0.39,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.941:0.281,0.498,0.221 0|0:0:1,0,0 0|0:0.462:0.592,0.354,0.054 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16142960 SNP-3.16141606. C A . PASS AR2=1;DR2=1;AF=0.323 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16146021 SNP-3.16144667. A G . PASS AR2=0.99;DR2=0.991;AF=0.393 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.814:0.009,0.169,0.823 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.819:0.012,0.157,0.831 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.659:0.011,0.319,0.67 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.819:0.007,0.167,0.826 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.862:0.004,0.129,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.673:0.016,0.294,0.689 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.931,0.068,0.001 1|1:1.917:0.003,0.077,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.879:0.124,0.872,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.757:0.015,0.212,0.772 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 1|1:1.93:0.002,0.067,0.931 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.003,0.091,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.003,0.081,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16147747 SNP-3.16146393. C A . PASS AR2=0.988;DR2=0.99;AF=0.353 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.671:0.47,0.388,0.141 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.032:0.252,0.464,0.284 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.898:0.308,0.486,0.206 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.898:0.308,0.486,0.206 0|0:0:1,0,0 +3 16147908 SNP-3.16146554. C A . PASS AR2=0.991;DR2=0.993;AF=0.348 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|0:0.461:0.548,0.444,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.291:0.003,0.702,0.295 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.061:0.002,0.935,0.063 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.862,0.132,0.006 1|1:1.951:0,0.049,0.951 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.049:0.952,0.048,0.001 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0.073:0.928,0.071,0.001 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.927,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.889,0.11,0.001 0|0:0.064:0.937,0.062,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.938,0.059,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16149035 SNP-3.16147681. A G . PASS AR2=0.991;DR2=0.992;AF=0.191 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.848,0.148,0.004 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.01,0.37,0.62 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.924,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.084,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.921,0.077,0.003 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.057:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.04,0.959 0|0:0.032:0.969,0.03,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16150473 SNP-3.16149119. A G . PASS AR2=0.994;DR2=0.995;AF=0.416 GT:DS:GP 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.506:0,0.494,0.506 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.707:0.01,0.274,0.717 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.107:0.896,0.101,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.203:0.808,0.182,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16155821 SNP-3.16154467. A G . PASS AR2=0.988;DR2=0.99;AF=0.257 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.006,0.132,0.863 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.748:0.253,0.746,0.001 1|1:2:0,0,1 0|1:1.129:0.058,0.755,0.187 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.672:0.011,0.306,0.683 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.856:0.002,0.141,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.348:0.655,0.341,0.003 0|0:0:1,0,0 1|1:1.874:0.001,0.123,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.002,0.085,0.913 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.806:0.012,0.17,0.818 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.747:0.012,0.229,0.759 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16156517 SNP-3.16155163. A G . PASS AR2=0.981;DR2=0.985;AF=0.235 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.689:0.021,0.268,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.771:0.229,0.771,0 1|1:2:0,0,1 0|1:1.232:0.11,0.548,0.342 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.821:0.005,0.169,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.001,0.126,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0.001,0.056,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.585:0.045,0.325,0.63 1|1:1.533:0.055,0.356,0.588 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.005,0.117,0.877 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.008,0.14,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.64:0.009,0.342,0.649 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16158960 SNP-3.16157606. A G . PASS AR2=0.915;DR2=0.939;AF=0.22 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.511:0.552,0.385,0.063 0|0:0:1,0,0 0|0:0.292:0.734,0.239,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.326:0.129,0.415,0.455 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.288:0.137,0.438,0.425 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.235:0.146,0.472,0.381 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.017:0.246,0.492,0.262 0|0:0:1,0,0 0|0:0.382:0.65,0.318,0.032 0|0:0.627:0.461,0.452,0.087 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.614:0.462,0.463,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.789:0.372,0.467,0.161 0|0:0:1,0,0 0|0:0.728:0.426,0.421,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.816,0.18,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.57:0.504,0.422,0.074 0|0:0.146:0.859,0.135,0.005 0|0:0:1,0,0 0|0:0.093:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.674:0.442,0.443,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.361:0.677,0.285,0.038 0|0:0.167:0.839,0.155,0.006 0|0:0.044:0.957,0.041,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.783,0.204,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.17:0.834,0.161,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.303:0.109,0.479,0.412 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.114:0.89,0.107,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.255:0.759,0.226,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.69,0.286,0.023 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.328:0.692,0.288,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.575:0.51,0.406,0.085 0|1:1.154:0.186,0.474,0.34 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.496:0.569,0.366,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.45:0.609,0.333,0.058 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.449:0.599,0.354,0.048 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16158961 SNP-3.16157607. A G . PASS AR2=0.95;DR2=0.965;AF=0.502 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.585:0.053,0.309,0.638 1|1:2:0,0,1 1|1:1.479:0.068,0.384,0.547 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.063:0.196,0.545,0.259 1|0:1:0,1,0 1|1:1.642:0.038,0.283,0.679 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.524:0.053,0.369,0.577 0|0:0:1,0,0 1|1:1.73:0.028,0.213,0.759 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.63:0.042,0.285,0.673 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.342:0.085,0.487,0.427 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.461:0.069,0.4,0.53 1|1:2:0,0,1 1|1:1.613:0.018,0.351,0.631 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.588:0.054,0.304,0.642 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.377:0.064,0.496,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.302:0.07,0.559,0.371 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.871:0.007,0.115,0.878 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.477:0.096,0.332,0.573 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.656:0.035,0.273,0.692 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.495:0.066,0.373,0.561 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.509:0.063,0.366,0.572 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.371:0.006,0.618,0.376 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.017,0.195,0.788 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.498:0.066,0.37,0.564 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.843:0.006,0.145,0.849 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16159744 SNP-3.16158390. C A . PASS AR2=0.992;DR2=0.993;AF=0.36 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 1|1:2:0,0,1 0|1:1.142:0.116,0.627,0.257 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.676:0.024,0.276,0.7 0|1:1:0,1,0 1|1:1.844:0.005,0.146,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.009,0.173,0.818 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.843:0.003,0.15,0.846 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.013,0.191,0.796 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.005,0.097,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16159923 SNP-3.16158569. A G . PASS AR2=0.997;DR2=0.998;AF=0.431 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.573:0.017,0.393,0.59 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.914:0.001,0.083,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16163231 SNP-3.16161877. A G . 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A G . PASS AR2=0.988;DR2=0.989;AF=0.439 GT:DS:GP 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 1|1:1.934:0.001,0.063,0.935 1|1:1.953:0,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 1|1:1.992:0,0.008,0.992 1|1:1.958:0.001,0.041,0.959 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.819:0.013,0.155,0.832 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|1:1.96:0,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.057,0.943 1|1:1.914:0.002,0.082,0.916 1|1:1.916:0.001,0.082,0.917 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.95 1|1:2:0,0,1 1|1:1.852:0.012,0.124,0.864 1|1:1.956:0,0.043,0.957 1|1:1.95:0.001,0.049,0.951 0|1:0.837:0.163,0.836,0 1|1:2:0,0,1 1|1:1.911:0.002,0.084,0.914 1|1:1.649:0.008,0.336,0.657 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.958:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.004,0.142,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 0|0:0.195:0.805,0.195,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.922:0,0.078,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.06,0.939 1|1:1.928:0.001,0.069,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.002,0.09,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16164237 SNP-3.16162883. C A . PASS AR2=0.994;DR2=0.995;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.162:0.015,0.809,0.176 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.011,0.161,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.253:0.081,0.585,0.334 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0,0.071,0.929 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.944 1|1:1.917:0,0.083,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0.002,0.997,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0,0.199,0.8 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16167564 SNP-3.16166210. C A . PASS AR2=1;DR2=1;AF=0.387 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16167942 SNP-3.16166588. A G . PASS AR2=0.929;DR2=0.945;AF=0.207 GT:DS:GP 0|0:0.215:0.8,0.186,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.123:0.883,0.11,0.007 0|0:0.218:0.794,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.684,0.288,0.028 0|0:0.499:0.535,0.43,0.035 1|1:2:0,0,1 0|1:0.656:0.412,0.521,0.068 0|0:0:1,0,0 0|0:0.325:0.7,0.274,0.025 0|0:0.199:0.812,0.178,0.01 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.256:0.76,0.224,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.35:0.682,0.287,0.031 0|1:1:0,1,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.291:0.715,0.279,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.728,0.253,0.02 0|1:1:0,1,0 0|0:0.06:0.94,0.06,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.325:0.7,0.275,0.025 1|0:0.648:0.386,0.581,0.033 0|0:0.416:0.638,0.308,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.907,0.087,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.097:0.904,0.095,0.001 0|0:0:1,0,0 0|0:0.328:0.703,0.265,0.032 0|0:0:1,0,0 0|0:0.281:0.738,0.242,0.019 0|0:0.317:0.707,0.269,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.994:0.041,0.925,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.806,0.186,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.005,0.116,0.879 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.15:0.861,0.128,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.055,0 0|0:0.354:0.68,0.287,0.034 0|1:1:0,1,0 0|0:0.297:0.722,0.258,0.02 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.773,0.203,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.718,0.259,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.305:0.723,0.248,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.915:0.36,0.365,0.275 +3 16168255 SNP-3.16166901. A G . PASS AR2=0.887;DR2=0.919;AF=0.214 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.602:0.504,0.389,0.107 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.047:0.221,0.511,0.268 1|1:1.381:0.126,0.367,0.507 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.767:0.424,0.384,0.192 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.977:0.219,0.585,0.196 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.123:0.242,0.393,0.365 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.506:0.551,0.391,0.057 0|0:0:1,0,0 0|0:0.501:0.56,0.378,0.061 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.911:0.281,0.528,0.191 1|1:2:0,0,1 0|0:0.401:0.631,0.337,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.439:0.61,0.34,0.05 0|0:0.445:0.598,0.359,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.687:0.441,0.432,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0.235:0.766,0.233,0.001 0|0:0:1,0,0 1|0:0.622:0.419,0.539,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.903,0.093,0.004 0|0:0.166:0.835,0.164,0.001 0|0:0.309:0.708,0.275,0.017 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.346:0.683,0.288,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.74:0.439,0.382,0.179 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.957,0.04,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.098:0.212,0.478,0.31 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.343:0.123,0.412,0.466 1|0:0.967:0.257,0.519,0.224 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.212:0.8,0.187,0.012 0|0:0:1,0,0 1|0:0.725:0.399,0.478,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.454:0.076,0.394,0.53 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.838,0.153,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.429:0.621,0.328,0.051 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.083:0.191,0.535,0.274 0|0:0.075:0.926,0.072,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.026,0.276,0.698 0|0:0.212:0.798,0.193,0.01 0|0:0.387:0.63,0.352,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.321:0.705,0.269,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.35:0.68,0.289,0.03 0|1:0.867:0.318,0.496,0.186 0|0:0.06:0.941,0.059,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16169101 SNP-3.16167747. A G . PASS AR2=0.986;DR2=0.988;AF=0.257 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.055,0.943 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.163:0.038,0.762,0.201 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.347:0.1,0.453,0.447 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0.001,0.021,0.978 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.915:0.002,0.08,0.917 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.881:0.36,0.399,0.241 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.003,0.138,0.859 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.415:0.017,0.551,0.432 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.008,0.112,0.88 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16173019 SNP-3.16171665. C A . PASS AR2=0.968;DR2=0.976;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:1.498:0.059,0.384,0.557 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.388:0.633,0.346,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.349:0.666,0.32,0.014 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.633:0.4,0.566,0.034 0|0:0:1,0,0 0|0:0.289:0.728,0.255,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.285:0,0.714,0.285 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.703,0.284,0.013 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.796,0.195,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.891,0.105,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.465:0.549,0.437,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.808:0.007,0.178,0.815 0|0:0.194:0.812,0.181,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0.001,0.065,0.934 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.004,0.061,0.936 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.654:0.03,0.285,0.684 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.768,0.21,0.022 0|0:0:1,0,0 0|0:0.184:0.816,0.184,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.748:0.02,0.212,0.768 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0.001 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16173556 SNP-3.16172202. C A . PASS AR2=0.949;DR2=0.962;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:1.805:0.011,0.173,0.816 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.898:0.004,0.093,0.903 0|0:0:1,0,0 1|0:1.372:0.121,0.387,0.493 1|1:1.984:0,0.015,0.984 1|1:1.661:0.033,0.273,0.694 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.58:0.028,0.364,0.608 1|1:2:0,0,1 1|0:1.245:0.099,0.556,0.345 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.814:0.005,0.176,0.819 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.734:0.023,0.22,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.764:0.009,0.219,0.773 1|1:2:0,0,1 1|1:1.579:0.045,0.331,0.624 1|1:1.98:0.001,0.019,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.616:0.032,0.321,0.647 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.677:0.033,0.258,0.71 1|1:1.984:0,0.016,0.984 1|1:1.642:0.04,0.278,0.682 1|1:1.683:0.031,0.254,0.714 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.68:0.035,0.249,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.31:0.098,0.494,0.408 0|0:0:1,0,0 1|1:1.453:0.002,0.542,0.456 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.603:0.043,0.311,0.646 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.927:0.001,0.071,0.928 1|1:1.982:0,0.017,0.983 1|1:1.95:0.003,0.044,0.953 1|1:1.84:0.013,0.134,0.853 1|1:1.923:0.002,0.072,0.926 1|1:1.739:0.021,0.218,0.76 1|1:1.601:0.008,0.382,0.61 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0,0.085,0.915 1|0:1.163:0.249,0.339,0.412 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.681:0.034,0.251,0.715 0|0:0:1,0,0 1|1:1.659:0.034,0.272,0.693 0|0:0:1,0,0 1|1:1.669:0.032,0.268,0.7 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.013,0.178,0.809 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.001,0.084,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.872:0.009,0.111,0.881 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0,0.245,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.009,0.181,0.81 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16173793 SNP-3.16172439. C A . PASS AR2=0.961;DR2=0.971;AF=0.361 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.778:0.012,0.198,0.79 0|0:0:1,0,0 1|1:1.559:0.052,0.338,0.611 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.888:0.004,0.105,0.892 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.711:0.018,0.254,0.729 0|0:0.042:0.958,0.041,0.001 1|1:1.82:0.011,0.159,0.831 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 1|1:1.632:0.036,0.295,0.668 0|0:0.095:0.908,0.088,0.003 0|0:0:1,0,0 0|0:0.053:0.947,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.836,0.164,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.775:0.014,0.196,0.789 0|0:0:1,0,0 0|1:1.525:0.058,0.359,0.583 1|1:2:0,0,1 1|1:1.505:0.063,0.369,0.568 1|1:1.557:0.052,0.34,0.608 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.576:0.049,0.327,0.624 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0,0.071,0.929 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.383:0.11,0.396,0.494 0|0:0:1,0,0 1|1:1.753:0.009,0.229,0.762 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.56:0.052,0.337,0.612 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.711:0.035,0.219,0.746 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.718:0.012,0.257,0.731 1|1:1.947:0,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.765,0.235,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.869:0.005,0.121,0.874 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.533:0.057,0.353,0.59 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|1:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.084,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.036,0.224,0.74 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 +3 16175848 SNP-3.16174494. C A . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16177665 SNP-3.16176311. C A . PASS AR2=0.989;DR2=0.991;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 0|0:0.051:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0.479:0.631,0.259,0.11 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.827,0.166,0.008 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.4:0.608,0.384,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.168:0.833,0.165,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.104:0.904,0.089,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.854,0.144,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.243:0.757,0.242,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.103:0.905,0.088,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.843,0.153,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16178411 SNP-3.16177057. C A . PASS AR2=0.939;DR2=0.954;AF=0.426 GT:DS:GP 1|1:2:0,0,1 1|1:1.553:0.053,0.34,0.606 1|1:1.769:0.014,0.202,0.783 1|1:2:0,0,1 1|1:1.825:0.01,0.156,0.834 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.871,0.124,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.551:0.082,0.285,0.633 0|0:0.116:0.885,0.113,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.077,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.27:0.167,0.396,0.437 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.786,0.167,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.256:0.762,0.219,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.802,0.184,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.849,0.14,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.49:0.039,0.432,0.529 1|1:2:0,0,1 1|1:1.24:0.145,0.469,0.385 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.256:0.125,0.494,0.381 1|1:1.66:0.028,0.284,0.688 1|0:1.374:0.11,0.406,0.484 1|0:1.149:0.171,0.508,0.321 1|1:1.969:0,0.031,0.969 1|1:1.157:0.183,0.478,0.339 1|0:1.296:0.126,0.451,0.423 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.366:0.105,0.424,0.471 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 1|1:1.961:0.001,0.037,0.962 1|1:2:0,0,1 0|0:0.104:0.902,0.092,0.006 1|0:1.31:0.118,0.454,0.428 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.786:0.002,0.211,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.006,0.182,0.812 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 1|1:1.962:0.002,0.034,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.16,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.038,0.002 0|0:0.156:0.851,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.844,0.155,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.005,0.175,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.902,0.093,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.003,0.059,0.939 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.546:0.098,0.259,0.644 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.65:0.054,0.242,0.704 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.488:0.077,0.357,0.565 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.752:0.022,0.205,0.773 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.401:0.716,0.167,0.117 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 1|1:1.626:0.027,0.321,0.652 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.838,0.15,0.012 +3 16180766 SNP-3.16179412. C A . PASS AR2=1;DR2=1;AF=0.447 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16184927 SNP-3.16183573. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0.001,0.035,0.963 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16185673 SNP-3.16184319. A G . PASS AR2=1;DR2=1;AF=0.317 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16186851 SNP-3.16185497. A G . PASS AR2=0.998;DR2=0.999;AF=0.287 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.776:0.228,0.768,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16188584 SNP-3.16187230. A G . 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C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16195500 SNP-3.16194146. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16196752 SNP-3.16195398. C A . PASS AR2=0.97;DR2=0.974;AF=0.302 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.707:0.019,0.256,0.726 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.749:0.016,0.218,0.766 0|0:0:1,0,0 1|1:1.817:0.012,0.159,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.007,0.164,0.829 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:1.764:0.011,0.215,0.774 1|1:1.836:0.006,0.153,0.842 1|1:1.694:0.024,0.259,0.718 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.657:0.028,0.287,0.685 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.892:0.004,0.101,0.895 0|0:0:1,0,0 1|1:1.72:0.02,0.24,0.74 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0.016,0.213,0.771 1|1:1.844:0.004,0.148,0.848 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.002,0.093,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.683:0.025,0.267,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.63:0.035,0.3,0.665 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.888:0.004,0.104,0.892 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.007,0.161,0.832 1|1:1.967:0,0.033,0.967 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.001,0.072,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.777:0.014,0.195,0.791 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.019,0.231,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.002,0.1,0.898 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.013,0.183,0.804 1|1:1.853:0.006,0.136,0.859 0|0:0:1,0,0 1|1:1.914:0.009,0.067,0.923 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.846:0.008,0.138,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.003,0.089,0.908 1|1:1.806:0.014,0.166,0.82 0|0:0:1,0,0 1|1:1.905:0.003,0.089,0.908 1|1:1.876:0.007,0.111,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.848:0.006,0.14,0.854 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16196939 SNP-3.16195585. C A . PASS AR2=0.981;DR2=0.986;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:1.811:0.008,0.173,0.819 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.006,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.449:0.072,0.408,0.521 1|1:1.979:0,0.02,0.979 1|1:1.623:0.035,0.307,0.658 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.893:0,0.107,0.893 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0.018:0.982,0.018,0 0|1:0.994:0.006,0.994,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.605:0.039,0.317,0.644 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.522:0.047,0.383,0.569 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.012,0.987 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.017,0.194,0.789 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.641:0.03,0.299,0.671 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.645:0.033,0.29,0.677 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.001,0.075,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.006,0.129,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.007,0.104,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.003,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16197579 SNP-3.16196225. C A . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16197647 SNP-3.16196293. C A . PASS AR2=0.977;DR2=0.981;AF=0.438 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.743:0.02,0.217,0.763 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.222:0.041,0.696,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.003,0.116,0.881 0|0:0:1,0,0 1|1:1.9:0.001,0.097,0.902 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.906:0.234,0.627,0.14 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.468:0.077,0.378,0.545 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.783:0.012,0.192,0.796 1|1:1.278:0.07,0.583,0.348 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.621:0.036,0.308,0.656 1|1:1.743:0.014,0.229,0.757 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.787:0.012,0.188,0.8 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.568:0.045,0.342,0.613 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.715:0.013,0.26,0.728 1|1:2:0,0,1 1|1:1.897:0.001,0.101,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.851:0.02,0.109,0.871 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.081:0.239,0.44,0.32 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0,0.057,0.943 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.003,0.077,0.921 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.002,0.052,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.005,0.132,0.863 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16199091 SNP-3.16197737. A G . PASS AR2=1;DR2=1;AF=0.368 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16202379 SNP-3.16201026. C A . PASS AR2=1;DR2=1;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.975,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16202825 SNP-3.16201472. A G . PASS AR2=0.904;DR2=0.92;AF=0.234 GT:DS:GP 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 1|1:1.793:0.016,0.175,0.809 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.241:0.782,0.195,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.153:0.853,0.141,0.006 0|0:0.075:0.927,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.104:0.899,0.097,0.003 0|0:0.118:0.886,0.111,0.003 0|0:0.066:0.937,0.06,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.004 0|0:0.072:0.93,0.067,0.002 0|0:0:1,0,0 0|1:1.348:0.04,0.572,0.388 0|0:0:1,0,0 0|0:0.149:0.856,0.138,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.84,0.153,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.852,0.147,0 0|0:0:1,0,0 0|0:0.132:0.872,0.124,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.76,0.216,0.024 1|1:2:0,0,1 0|0:0.132:0.869,0.129,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.091:0.909,0.09,0 0|0:0.273:0.75,0.226,0.023 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0.075:0.927,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.695:0.422,0.461,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.839,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0.411:0.638,0.313,0.049 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 0|0:0.139:0.864,0.133,0.003 0|0:0.083:0.917,0.083,0 1|1:2:0,0,1 0|0:0.187:0.824,0.165,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.239:0.764,0.233,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0.121:0.879,0.121,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.203:0.798,0.202,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.768:0.38,0.472,0.148 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.399:0.643,0.315,0.042 1|1:2:0,0,1 0|0:0.05:0.953,0.044,0.003 1|0:0.861:0.318,0.503,0.179 0|1:0.717:0.413,0.457,0.13 0|0:0.379:0.652,0.316,0.031 0|0:0.093:0.908,0.091,0.001 0|0:0.718:0.412,0.458,0.13 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.953,0.044,0.003 0|0:0.118:0.887,0.107,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.175:0.21,0.405,0.385 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.717:0.413,0.457,0.13 0|0:0.097:0.906,0.092,0.003 0|0:0.321:0.706,0.267,0.027 0|0:0.139:0.866,0.129,0.005 0|0:0.333:0.695,0.277,0.028 0|0:0:1,0,0 0|0:0.095:0.908,0.088,0.003 0|0:0.145:0.861,0.134,0.005 0|0:0.12:0.884,0.113,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.141:0.864,0.132,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.083:0.918,0.08,0.001 0|0:0.453:0.598,0.352,0.051 0|0:0:1,0,0 0|1:0.697:0.391,0.52,0.088 0|0:0:1,0,0 0|0:0.178:0.83,0.162,0.008 1|1:2:0,0,1 0|0:0.306:0.711,0.273,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|0:0.459:0.565,0.41,0.025 0|0:0:1,0,0 0|0:0.315:0.704,0.277,0.019 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.052,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.305:0.719,0.258,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 0|0:0:1,0,0 0|0:0.207:0.802,0.19,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.717:0.413,0.457,0.13 1|0:0.717:0.413,0.457,0.13 0|0:0.172:0.843,0.142,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16203548 SNP-3.16202195. A G . PASS AR2=0.996;DR2=0.997;AF=0.328 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.964 0|1:1:0,1,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.449:0.551,0.448,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0.001,0.028,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.934,0.065,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16204694 SNP-3.16203341. C A . PASS AR2=0.929;DR2=0.95;AF=0.424 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.532:0.542,0.384,0.074 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.543:0.55,0.358,0.092 1|1:2:0,0,1 1|0:0.679:0.437,0.446,0.117 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.589:0.496,0.419,0.085 1|1:2:0,0,1 0|1:0.874:0.288,0.55,0.162 1|1:2:0,0,1 0|0:0.468:0.6,0.331,0.068 0|0:0:1,0,0 0|1:0.552:0.531,0.387,0.082 0|0:0.785:0.48,0.254,0.266 1|0:0.8:0.356,0.489,0.155 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.396:0.688,0.228,0.084 0|0:0.059:0.945,0.051,0.004 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.801,0.192,0.008 0|0:0.014:0.986,0.014,0 0|0:0.093:0.909,0.089,0.002 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.568:0.511,0.41,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.001 0|0:0.649:0.569,0.213,0.218 1|1:2:0,0,1 0|0:0.093:0.909,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.858,0.138,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.599:0.489,0.423,0.088 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0.001,0.032,0.968 1|1:1.975:0,0.025,0.975 1|1:1.96:0,0.04,0.96 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.933,0.063,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.948 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0.096:0.904,0.096,0 0|0:0:1,0,0 1|1:1.94:0.001,0.057,0.941 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.329:0.685,0.3,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.857,0.134,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.515:0.555,0.376,0.07 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0.565:0.524,0.388,0.088 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.067,0.932 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0.093:0.909,0.088,0.002 0|0:0.12:0.884,0.113,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.667:0.446,0.44,0.113 0|1:0.683:0.419,0.478,0.103 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.524:0.549,0.377,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.001,0.099,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.722:0.001,0.277,0.722 0|0:0.354:0.693,0.26,0.047 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.12:0.888,0.104,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.873,0.119,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.472:0.588,0.351,0.06 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.484:0.579,0.358,0.063 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16204817 SNP-3.16203464. C A . PASS AR2=0.926;DR2=0.945;AF=0.274 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.555:0.051,0.344,0.605 0|0:0:1,0,0 1|1:1.45:0.076,0.399,0.525 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.512:0.059,0.369,0.572 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.5:0.076,0.349,0.576 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.501:0.031,0.437,0.532 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.637:0.034,0.295,0.671 0|1:1.205:0.156,0.482,0.361 1|1:1.674:0.029,0.269,0.703 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.259:0.124,0.492,0.383 1|1:1.549:0.052,0.347,0.601 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.696:0.029,0.246,0.725 1|0:1:0,1,0 0|1:1.313:0.111,0.465,0.424 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.692:0.027,0.254,0.719 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.639:0.03,0.302,0.668 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.594:0.04,0.326,0.634 1|0:1:0,1,0 0|1:1.437:0.083,0.398,0.519 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.394:0.125,0.356,0.519 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.228:0.116,0.541,0.344 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.514:0.056,0.374,0.57 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.612:0.033,0.321,0.646 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.158:0.861,0.12,0.019 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.513:0.071,0.344,0.584 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.581:0.128,0.164,0.709 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.662:0.03,0.277,0.692 1|1:1.637:0.034,0.295,0.671 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.914:0.004,0.077,0.918 1|1:1.859:0.008,0.125,0.867 0|0:0:1,0,0 1|1:1.575:0.036,0.353,0.611 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.006,0.125,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16205976 SNP-3.16204623. A G . PASS AR2=0.981;DR2=0.985;AF=0.215 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.629:0.372,0.627,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.031,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.812:0.191,0.807,0.002 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.171:0.835,0.16,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.847,0.149,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.356:0.661,0.323,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.139:0.869,0.123,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.818,0.156,0.026 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.422:0.647,0.285,0.068 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.129:0.881,0.108,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.132:0.874,0.121,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16207401 SNP-3.16206048. C A . PASS AR2=1;DR2=1;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16208608 SNP-3.16207255. A G . PASS AR2=0.991;DR2=0.992;AF=0.289 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.827:0.287,0.6,0.113 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.621:0.455,0.47,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.002:0.128,0.741,0.13 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.965:0.273,0.488,0.238 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16210681 SNP-3.16209328. A G . PASS AR2=0.999;DR2=0.999;AF=0.212 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0,0.121,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.998:0.018,0.965,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16211192 SNP-3.16209839. C A . PASS AR2=0.999;DR2=0.999;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0,0.05,0.95 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16211757 SNP-3.16210404. A G . PASS AR2=0.984;DR2=0.984;AF=0.466 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.96:0.272,0.496,0.232 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.96:0.272,0.496,0.232 1|1:2:0,0,1 1|1:0.96:0.272,0.496,0.232 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.96:0.272,0.496,0.232 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.96:0.272,0.496,0.232 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.96:0.272,0.496,0.232 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.96:0.272,0.496,0.232 1|0:0.96:0.272,0.496,0.232 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16212460 SNP-3.16211107. C A . PASS AR2=0.985;DR2=0.989;AF=0.304 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.641:0,0.358,0.642 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.884:0.012,0.092,0.896 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.986:0.054,0.907,0.04 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.945:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0,0.163,0.836 1|1:2:0,0,1 1|0:1.397:0.078,0.447,0.475 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.515:0.057,0.371,0.572 0|0:0:1,0,0 1|1:1.842:0.002,0.154,0.844 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.977:0.043,0.937,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.242:0.168,0.421,0.411 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 +3 16212633 SNP-3.16211280. A G . PASS AR2=0.996;DR2=0.997;AF=0.433 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.647:0,0.353,0.647 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.122:0.878,0.122,0 1|1:1.903:0.001,0.095,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:2:0,0,1 1|0:0.872:0.129,0.871,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.962 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.016,0.984 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16214847 SNP-3.16213494. A G . PASS AR2=0.968;DR2=0.976;AF=0.325 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.836:0.007,0.151,0.843 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.005,0.134,0.861 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0.398:0.635,0.332,0.033 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.588:0.5,0.412,0.088 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.881:0.003,0.113,0.884 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.96:0.285,0.469,0.245 1|1:1.835:0.007,0.152,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.673:0.035,0.258,0.708 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.704:0.026,0.245,0.729 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.024,0.217,0.759 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.704:0.026,0.245,0.729 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.602:0.413,0.571,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.324:0.154,0.368,0.478 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.724:0.024,0.228,0.748 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.826:0.008,0.158,0.834 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.514:0.493,0.501,0.007 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.047:0.102,0.748,0.15 1|1:2:0,0,1 1|1:1.877:0.003,0.116,0.88 0|0:0:1,0,0 0|0:0.047:0.956,0.041,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.62:0.043,0.294,0.663 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16216727 SNP-3.16215374. A G . PASS AR2=1;DR2=1;AF=0.284 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16216860 SNP-3.16215507. A G . PASS AR2=0.997;DR2=0.998;AF=0.273 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.929:0,0.07,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.416:0.584,0.416,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.001,0.092,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16221494 SNP-3.16220141. A G . PASS AR2=0.994;DR2=0.995;AF=0.278 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.876,0.121,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.096:0.904,0.096,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.943:0.002,0.053,0.945 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.9,0.1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.479:0.549,0.423,0.028 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16221513 SNP-3.16220160. A G . PASS AR2=0.868;DR2=0.914;AF=0.241 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.548:0.54,0.371,0.088 0|0:0.151:0.856,0.136,0.008 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.486:0.578,0.359,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.602:0.488,0.421,0.09 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.638:0.464,0.433,0.102 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.623:0.474,0.428,0.097 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.285:0.715,0.285,0 0|0:0.542:0.537,0.384,0.079 1|1:2:0,0,1 0|0:0.755:0.384,0.477,0.139 0|0:0.497:0.572,0.359,0.069 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.252:0.153,0.441,0.405 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.591:0.496,0.417,0.087 0|1:0.622:0.475,0.428,0.097 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.823:0.335,0.507,0.158 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.197:0.004,0.796,0.201 0|0:0.18:0.82,0.18,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.585:0.5,0.416,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.366:0.653,0.328,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.587:0.498,0.416,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.772,0.171,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.629:0.47,0.431,0.099 0|0:0:1,0,0 0|0:0.476:0.574,0.376,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.262:0.149,0.44,0.411 0|0:0:1,0,0 0|0:0.589:0.497,0.417,0.086 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.875:0.287,0.551,0.162 0|0:0.623:0.474,0.428,0.097 0|0:0.59:0.496,0.417,0.087 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.623:0.474,0.428,0.097 0|0:0.826:0.375,0.424,0.201 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.966:0.034,0.966,0 0|0:0.616:0.479,0.426,0.095 0|0:0.588:0.498,0.416,0.086 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.436:0.121,0.322,0.557 0|0:0.112:0.896,0.096,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.582:0.502,0.414,0.084 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.031,0.127,0.842 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.495:0.572,0.362,0.067 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.541:0.533,0.394,0.073 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.623:0.474,0.428,0.097 +3 16222648 SNP-3.16221295. A G . PASS AR2=1;DR2=1;AF=0.311 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16225523 SNP-3.16224170. A G . PASS AR2=0.997;DR2=0.998;AF=0.289 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.418:0.582,0.418,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.105:0.9,0.094,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 +3 16227575 SNP-3.16226222. A G . PASS AR2=0.981;DR2=0.984;AF=0.265 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.869:0.005,0.12,0.874 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.793,0.206,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0.003,0.073,0.925 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.74:0.017,0.226,0.757 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.003,0.076,0.92 1|0:0.872:0.13,0.868,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.015,0.225,0.759 1|1:1.74:0.017,0.226,0.757 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.769:0.013,0.205,0.782 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.74:0.017,0.226,0.757 0|0:0:1,0,0 0|1:0.894:0.106,0.894,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.001,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.745:0.017,0.222,0.761 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.017,0.226,0.757 1|1:1.931:0.002,0.065,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.785:0.015,0.186,0.799 1|1:1.74:0.017,0.226,0.757 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.005,0.079,0.916 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.929:0.002,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 +3 16228073 SNP-3.16226720. A G . PASS AR2=0.997;DR2=0.997;AF=0.282 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0,0.089,0.911 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0.032:0.969,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.994:0.006,0.994,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.074:0.927,0.073,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.814:0,0.186,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16241227 SNP-3.16239874. C A . PASS AR2=0.991;DR2=0.993;AF=0.317 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0,0.041,0.958 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.013,0.227,0.76 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.794:0.011,0.184,0.805 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.762:0.01,0.219,0.771 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.999:0.001,0.999,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.877:0.004,0.116,0.88 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.654:0.024,0.299,0.678 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.897:0,0.103,0.897 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.01,0.203,0.787 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0,0.055,0.945 0|0:0:1,0,0 +3 16244812 SNP-3.16243459. C A . PASS AR2=0.994;DR2=0.995;AF=0.338 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.941:0.059,0.941,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.885:0.317,0.48,0.203 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.978:0.023,0.976,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.001,0.104,0.896 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.016,0.196,0.788 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.197:0.833,0.137,0.03 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16246646 SNP-3.16245293. C A . PASS AR2=0.921;DR2=0.937;AF=0.198 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.323:0.681,0.315,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.974,0.025,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.069:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.797,0.191,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.06,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.774,0.214,0.012 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0.316:0.723,0.238,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.792,0.194,0.014 0|0:0:1,0,0 0|0:0.303:0.711,0.275,0.014 0|0:0.15:0.853,0.144,0.003 0|0:0:1,0,0 0|0:0.075:0.927,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.841,0.147,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.155:0.851,0.144,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|0:0.554:0.466,0.514,0.02 0|0:0.152:0.851,0.145,0.003 0|0:0:1,0,0 1|1:1.42:0.078,0.424,0.498 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.63:0.382,0.605,0.012 1|1:0.866:0.335,0.464,0.201 0|0:0:1,0,0 0|0:0.262:0.742,0.254,0.004 0|0:0.239:0.788,0.185,0.027 0|0:0.68:0.408,0.504,0.088 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.503:0.065,0.367,0.568 0|0:0:1,0,0 0|0:0.029:0.972,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.798,0.194,0.008 1|0:1.34:0.102,0.456,0.442 0|0:0.019:0.981,0.018,0 1|1:1.554:0.05,0.346,0.604 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.86,0.135,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0.001 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.878,0.119,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.039,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.838,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.874,0.116,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.672:0.423,0.481,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.536:0.054,0.357,0.59 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.97,0.029,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.316:0.736,0.211,0.053 0|0:0.305:0.722,0.251,0.027 0|0:0.175:0.834,0.158,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.135:0.876,0.112,0.011 0|0:0.055:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.913:0.344,0.398,0.258 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.723:0.407,0.464,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16248317 SNP-3.16246964. A G . PASS AR2=0.988;DR2=0.99;AF=0.274 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.825:0.009,0.156,0.834 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.085:0.917,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.92,0.079,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.034,0.296,0.67 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 1|1:1.985:0,0.014,0.985 1|0:0.997:0.01,0.982,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.941:0.059,0.941,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.773,0.227,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.642:0.033,0.292,0.675 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.837:0.01,0.142,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.945,0.05,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.945,0.05,0.004 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16248339 SNP-3.16246986. A G . 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A G . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16249376 SNP-3.16248023. A G . PASS AR2=0.884;DR2=0.923;AF=0.368 GT:DS:GP 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.407:0.626,0.342,0.032 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.235:0.765,0.234,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.342:0.677,0.304,0.019 1|1:2:0,0,1 0|1:0.842:0.238,0.682,0.08 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.177:0.105,0.612,0.282 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.714:0.414,0.458,0.128 1|1:2:0,0,1 1|0:0.688:0.432,0.447,0.12 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.745:0.385,0.486,0.129 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.644:0.46,0.436,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.644:0.46,0.436,0.104 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.354:0.026,0.594,0.38 0|0:0.688:0.432,0.447,0.12 0|1:0.538:0.555,0.353,0.092 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.701:0.422,0.455,0.123 0|0:0:1,0,0 1|0:1.546:0.026,0.402,0.572 0|0:0:1,0,0 0|0:0.388:0.629,0.354,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.164:0.251,0.333,0.415 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.718:0.284,0.715,0.002 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.381:0.658,0.302,0.04 0|0:0.067:0.934,0.066,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.645:0.449,0.457,0.094 0|0:0:1,0,0 0|1:0.644:0.462,0.432,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.613:0.483,0.421,0.096 0|0:0.453:0.547,0.453,0 0|0:0:1,0,0 1|0:0.575:0.51,0.405,0.085 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.549:0.529,0.392,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.712:0.416,0.456,0.128 0|0:0.171:0.83,0.17,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.378:0.67,0.281,0.048 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.645:0.459,0.436,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.575:0.51,0.405,0.085 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.743:0.397,0.463,0.14 0|0:0:1,0,0 1|0:0.644:0.46,0.436,0.104 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.01:0.219,0.551,0.23 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.549:0.529,0.392,0.079 0|1:1.406:0.082,0.43,0.488 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.774:0.311,0.604,0.085 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.165:0.251,0.333,0.416 0|1:0.645:0.459,0.436,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.769:0.032,0.167,0.801 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.745:0.396,0.464,0.141 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.002,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.654:0.454,0.437,0.108 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.549:0.529,0.392,0.079 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.668:0.445,0.442,0.113 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16249805 SNP-3.16248452. A G . PASS AR2=0.991;DR2=0.992;AF=0.215 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.869,0.124,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0.051:0.949,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.061,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.037:0.964,0.036,0.001 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 1|1:2:0,0,1 0|0:0.087:0.914,0.085,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.736,0.243,0.021 0|0:0.21:0.79,0.21,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.907,0.093,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0.013:0.988,0.012,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.946,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.039:0.962,0.037,0.001 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16249928 SNP-3.16248575. C A . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16250175 SNP-3.16248822. A G . PASS AR2=0.961;DR2=0.972;AF=0.238 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.951,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.052:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.81,0.189,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.82:0.279,0.622,0.099 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.029:0.971,0.028,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.216:0.804,0.177,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.374:0.66,0.305,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.868:0.254,0.624,0.122 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.421:0.628,0.323,0.049 0|0:0:1,0,0 0|0:0.848:0.504,0.145,0.352 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.339:0.69,0.281,0.029 0|0:0.08:0.921,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.035:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.315:0.711,0.262,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.369:0.666,0.3,0.034 0|0:0.349:0.682,0.286,0.031 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.332:0.696,0.276,0.028 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.369:0.666,0.3,0.034 +3 16250281 SNP-3.16248928. C A . PASS AR2=0.983;DR2=0.985;AF=0.323 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.001,0.098,0.901 0|0:0:1,0,0 1|1:1.802:0.01,0.177,0.812 1|1:1.948:0.002,0.047,0.951 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.975:0.038,0.95,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.896,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.716,0.274,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.077:0.923,0.076,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.003,0.109,0.888 1|1:1.869:0.005,0.12,0.874 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.998:0.002,0.998,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.171:0.841,0.147,0.012 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 1|1:1.929:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.008,0.156,0.836 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.885,0.11,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.003,0.048,0.949 0|0:0:1,0,0 0|0:0.121:0.884,0.111,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.005,0.119,0.876 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.003,0.08,0.917 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.815:0.012,0.161,0.827 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.006,0.137,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.002,0.064,0.934 1|1:1.816:0.008,0.168,0.824 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.089:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.884,0.111,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0.11:0.902,0.085,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0,0.069,0.931 0|0:0:1,0,0 +3 16251439 SNP-3.16250086. A G . PASS AR2=0.999;DR2=0.999;AF=0.496 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.937,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.007,0.108,0.885 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 +3 16252381 SNP-3.16251028. C A . PASS AR2=0.989;DR2=0.991;AF=0.266 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.195:0.071,0.663,0.266 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.995:0.005,0.995,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.001,0.13,0.869 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.59:0.047,0.315,0.637 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.665:0.029,0.278,0.694 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.734:0.02,0.227,0.754 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.805:0.008,0.179,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.005,0.094,0.901 0|0:0:1,0,0 +3 16253135 SNP-3.16251782. C A . PASS AR2=0.94;DR2=0.957;AF=0.334 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.013,0.142,0.844 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.676:0.035,0.254,0.711 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.315:0.111,0.463,0.426 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.438:0.092,0.378,0.53 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|1:0.595:0.406,0.592,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.094:0.907,0.092,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.41:0.079,0.432,0.489 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.12:0.116,0.648,0.236 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.529:0.053,0.364,0.583 1|1:1.487:0.065,0.383,0.552 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.683:0.004,0.31,0.687 1|1:1.898:0,0.102,0.898 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.984:0.016,0.984,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.001,0.146,0.853 0|0:0:1,0,0 0|1:1.503:0.031,0.434,0.535 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.331:0.108,0.452,0.44 1|1:1.51:0.039,0.412,0.549 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0.001,0.024,0.976 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.024,0.155,0.82 1|1:1.572:0.055,0.317,0.628 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:1.399:0.088,0.425,0.487 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.024,0.3,0.676 1|1:1.904:0.008,0.081,0.912 1|1:2:0,0,1 1|1:1.777:0.025,0.174,0.801 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.805,0.161,0.034 1|0:1.358:0.046,0.55,0.404 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0.001,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.003,0.062,0.934 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.936:0.001,0.061,0.938 0|0:0:1,0,0 1|1:1.978:0.001,0.021,0.978 1|1:2:0,0,1 0|0:0.283:0.817,0.083,0.1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.283:0.817,0.083,0.1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.304:0.141,0.414,0.445 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 1|1:1.526:0.079,0.316,0.605 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.005,0.083,0.912 1|1:1.901:0.009,0.081,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.696:0.002,0.3,0.698 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.001,0.127,0.871 0|0:0:1,0,0 +3 16255263 SNP-3.16253910. A G . PASS AR2=0.975;DR2=0.982;AF=0.25 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.496:0.068,0.367,0.565 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.638:0.033,0.295,0.671 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.684:0.026,0.264,0.71 1|1:1.576:0.051,0.321,0.627 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.678:0.029,0.264,0.707 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.983:0.017,0.983,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.115:0.885,0.115,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.638:0.033,0.296,0.671 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.735:0.025,0.215,0.76 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.693:0.027,0.254,0.719 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.648:0.033,0.285,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.028,0.247,0.725 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16257142 SNP-3.16255789. A G . PASS AR2=1;DR2=1;AF=0.296 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16258144 SNP-3.16256791. C A . PASS AR2=0.997;DR2=0.997;AF=0.373 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.093:0.913,0.082,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.17:0.845,0.14,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.105:0.907,0.082,0.012 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|0:1.02:0.028,0.925,0.047 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16258485 SNP-3.16257132. C A . PASS AR2=0.994;DR2=0.995;AF=0.367 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.006,0.145,0.848 1|1:2:0,0,1 0|0:0.162:0.852,0.134,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.006,0.145,0.848 1|1:2:0,0,1 1|1:1.79:0.009,0.191,0.799 1|1:1.891:0.004,0.1,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.789:0.011,0.188,0.8 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.093:0.916,0.075,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.996:0.046,0.913,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16258806 SNP-3.16257453. A G . PASS AR2=0.996;DR2=0.997;AF=0.232 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.733:0.005,0.256,0.738 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.003,0.046,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.014,0.211,0.775 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16258883 SNP-3.16257530. A G . PASS AR2=0.981;DR2=0.985;AF=0.363 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.314:0.71,0.265,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.002,0.045,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.017,0.194,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.613:0.051,0.284,0.664 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.002,0.045,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.918,0.081,0.001 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.419:0.585,0.411,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.835:0.008,0.149,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.887:0.006,0.1,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0.014,0.113,0.873 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.049:0.206,0.54,0.255 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.354:0.677,0.291,0.031 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.641:0.03,0.298,0.672 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.777,0.205,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.002,0.043,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.008,0.147,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.022,0.118,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 +3 16259008 SNP-3.16257655. A G . PASS AR2=0.894;DR2=0.921;AF=0.236 GT:DS:GP 0|1:0.973:0.263,0.501,0.236 0|0:0.042:0.96,0.038,0.002 0|0:0.948:0.344,0.365,0.292 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.376:0.123,0.379,0.499 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.712:0.408,0.473,0.12 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.664:0.476,0.384,0.14 0|0:0:1,0,0 1|1:1.622:0.036,0.306,0.658 0|0:0:1,0,0 1|1:1.739:0.018,0.225,0.757 0|1:0.781:0.38,0.46,0.161 0|0:0.865:0.371,0.393,0.236 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.643:0.031,0.296,0.673 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.768:0.393,0.446,0.161 0|0:0.102:0.901,0.096,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.707:0.023,0.248,0.729 0|0:0.092:0.912,0.085,0.003 0|0:0.599:0.494,0.413,0.093 0|0:0.144:0.859,0.138,0.003 0|0:0.072:0.93,0.069,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.147:0.855,0.142,0.003 0|0:0.198:0.812,0.178,0.01 0|0:0:1,0,0 0|0:0.483:0.552,0.414,0.035 1|1:2:0,0,1 0|0:0.423:0.612,0.353,0.035 0|0:0.136:0.869,0.126,0.005 0|0:0.442:0.581,0.396,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.578:0.495,0.432,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.195:0.171,0.464,0.366 0|0:0:1,0,0 0|0:1.198:0.234,0.335,0.431 0|1:0.992:0.277,0.455,0.269 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.956,0.041,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.695:0.422,0.461,0.117 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.678:0.026,0.269,0.705 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.291:0.726,0.257,0.017 0|0:0.657:0.45,0.444,0.107 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.048,0.295,0.657 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.752,0.217,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.567:0.527,0.379,0.094 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.755:0.017,0.211,0.772 0|0:0:1,0,0 1|1:1.61:0.073,0.243,0.684 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.38:0.657,0.306,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.844:0.341,0.475,0.184 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.102:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16260428 SNP-3.16259075. A G . PASS AR2=0.981;DR2=0.985;AF=0.473 GT:DS:GP 0|0:0.507:0.643,0.208,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.971,0.028,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.263:0.746,0.244,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.948,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.144:0.863,0.13,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.081:0.919,0.081,0 1|1:1.856:0.001,0.141,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.794:0.335,0.536,0.129 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.727:0.379,0.515,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0.066:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.017:0,0.983,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.277:0.732,0.259,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.249:0.764,0.223,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.152:0.852,0.144,0.004 1|1:1.961:0,0.039,0.961 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0.279:0.751,0.218,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.077:0.928,0.067,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.396:0.622,0.359,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.943,0.057,0 1|1:2:0,0,1 +3 16260660 SNP-3.16259307. A G . PASS AR2=0.995;DR2=0.995;AF=0.286 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.037,0.963 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.955:0.001,0.043,0.956 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.963 1|1:1.962:0.001,0.036,0.963 0|0:0:1,0,0 1|1:2:0,0,1 +3 16263079 SNP-3.16261725. A G . PASS AR2=0.995;DR2=0.996;AF=0.269 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.018,0.197,0.785 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.418:0.585,0.412,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.006,0.104,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16264069 SNP-3.16262715. C A . PASS AR2=0.991;DR2=0.994;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0.005,0.107,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.626:0.071,0.231,0.697 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.637:0.005,0.352,0.643 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0.02:0.98,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.428:0.088,0.395,0.517 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16266636 SNP-3.16265282. C A . PASS AR2=1;DR2=1;AF=0.448 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16268544 SNP-3.16267190. C A . PASS AR2=0.999;DR2=0.999;AF=0.444 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.253:0.748,0.252,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16269971 SNP-3.16268617. A G . PASS AR2=0.999;DR2=0.999;AF=0.418 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.001,0.07,0.929 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16270468 SNP-3.16269114. A G . PASS AR2=0.997;DR2=0.997;AF=0.287 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.006,0.146,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.841:0.006,0.146,0.848 1|1:1.957:0.001,0.042,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16271615 SNP-3.16270261. C A . PASS AR2=0.998;DR2=0.999;AF=0.431 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.022,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.561:0.462,0.516,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16275105 SNP-3.16273751. C A . PASS AR2=0.996;DR2=0.997;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.788:0.013,0.186,0.801 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.535:0.005,0.455,0.54 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.811,0.189,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16275267 SNP-3.16273913. C A . PASS AR2=1;DR2=1;AF=0.444 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16276606 SNP-3.16275252. C A . PASS AR2=0.969;DR2=0.976;AF=0.352 GT:DS:GP 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.22:0.017,0.747,0.236 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.612:0.033,0.323,0.644 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.693:0.023,0.261,0.716 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.309:0.062,0.566,0.371 1|1:1.902:0.004,0.09,0.906 1|1:1.805:0.013,0.169,0.818 1|1:1.841:0.005,0.15,0.846 1|1:1.928:0.002,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.51:0.051,0.387,0.562 0|0:0:1,0,0 1|1:1.869:0.006,0.119,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.006,0.111,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.978:0.001,0.021,0.978 0|1:0.657:0.437,0.469,0.094 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.613:0.038,0.31,0.652 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.002,0.179,0.819 1|1:1.92:0,0.08,0.92 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.708:0.034,0.223,0.743 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.751:0.016,0.216,0.767 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.881:0.003,0.114,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.141:0.128,0.602,0.269 0|0:0:1,0,0 1|1:1.742:0.023,0.213,0.764 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.004,0.093,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.073,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.021,0.233,0.747 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.602:0.006,0.386,0.608 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16277496 SNP-3.16276142. A G . PASS AR2=1;DR2=1;AF=0.247 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16278608 SNP-3.16277254. C A . PASS AR2=0.997;DR2=0.998;AF=0.44 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0.01,0.178,0.813 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.607:0.049,0.296,0.656 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16279097 SNP-3.16277743. A G . PASS AR2=0.915;DR2=0.94;AF=0.442 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.745:0.007,0.241,0.752 1|1:1.543:0.051,0.355,0.594 0|0:0.25:0.759,0.232,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.521:0.06,0.359,0.581 0|1:0.847:0.272,0.61,0.119 1|1:1.895:0.004,0.096,0.899 1|1:1.524:0.034,0.409,0.557 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.522:0.059,0.36,0.581 1|1:2:0,0,1 1|1:1.626:0.035,0.303,0.662 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.003:0.285,0.427,0.288 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.075:0.23,0.465,0.305 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.512:0.595,0.299,0.106 1|1:2:0,0,1 1|1:1.593:0.051,0.305,0.644 1|1:1.58:0.051,0.318,0.631 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.049:0.179,0.594,0.228 1|1:1.531:0.058,0.354,0.588 1|1:2:0,0,1 1|0:1.289:0.177,0.357,0.466 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.93:0.259,0.553,0.188 1|1:2:0,0,1 0|0:0.318:0.712,0.259,0.03 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.413:0.069,0.448,0.483 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.435:0.081,0.403,0.516 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.428:0.078,0.416,0.506 1|1:1.26:0.117,0.505,0.378 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.033,0.24,0.727 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.783:0.237,0.743,0.02 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.345:0.143,0.368,0.489 0|0:0:1,0,0 1|1:1.386:0.13,0.353,0.516 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.495:0.065,0.375,0.56 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.503:0.066,0.365,0.569 0|0:0.373:0.677,0.274,0.049 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.527:0.058,0.357,0.585 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.395:0.095,0.414,0.49 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.521:0.06,0.36,0.58 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.445:0.091,0.372,0.537 1|1:1.563:0.053,0.332,0.616 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.459:0.074,0.393,0.533 1|1:2:0,0,1 1|1:1.893:0.005,0.096,0.898 1|1:2:0,0,1 1|0:1.589:0.02,0.37,0.61 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.393:0.105,0.396,0.498 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16279194 SNP-3.16277840. A G . PASS AR2=0.991;DR2=0.991;AF=0.388 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.227:0.773,0.226,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.998:0.25,0.503,0.248 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.955:0.273,0.498,0.228 1|1:0.955:0.273,0.498,0.229 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.228:0.782,0.209,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16283872 SNP-3.16282518. A G . PASS AR2=0.997;DR2=0.997;AF=0.443 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.212:0.798,0.191,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.017:0.983,0.017,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.871,0.123,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.951,0.046,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.097:0.903,0.097,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.923,0.072,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 +3 16283978 SNP-3.16282624. C A . PASS AR2=0.997;DR2=0.998;AF=0.474 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.074:0.931,0.064,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.079:0.921,0.079,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.863,0.123,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16284368 SNP-3.16283014. C A . PASS AR2=0.995;DR2=0.996;AF=0.457 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0,0.157,0.843 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.937:0,0.063,0.937 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.827:0,0.173,0.827 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.169:0.834,0.162,0.003 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.835,0.162,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.865:0.002,0.13,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.029:0.971,0.028,0.001 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16284457 SNP-3.16283103. A G . 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C A . PASS AR2=0.955;DR2=0.966;AF=0.299 GT:DS:GP 1|1:1.956:0.001,0.042,0.957 1|1:1.832:0.021,0.126,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.998:0.06,0.883,0.058 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.526:0.059,0.357,0.585 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.633:0.055,0.257,0.688 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.44:0.07,0.42,0.51 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.963:0.212,0.614,0.175 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|0:0.816:0.236,0.712,0.052 1|1:2:0,0,1 0|1:0.806:0.324,0.546,0.13 1|1:1.683:0.009,0.298,0.693 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0,0.136,0.864 1|1:1.912:0,0.088,0.912 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.357:0.001,0.641,0.358 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.913,0.082,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.022,0.155,0.824 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.439:0.084,0.394,0.522 0|0:0:1,0,0 1|1:1.357:0.11,0.423,0.467 0|0:0:1,0,0 1|1:1.215:0.158,0.469,0.373 0|0:0:1,0,0 0|0:0.37:0.719,0.192,0.089 1|1:1.539:0.068,0.325,0.607 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.347:0.738,0.176,0.086 0|0:0:1,0,0 1|0:1.48:0.075,0.371,0.555 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.003,0.086,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.177:0.839,0.145,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 +3 16293444 SNP-3.16292090. C A . PASS AR2=1;DR2=1;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16294316 SNP-3.16292962. C A . PASS AR2=0.995;DR2=0.996;AF=0.488 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.147,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.155:0.851,0.144,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.249:0.767,0.217,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.916,0.082,0.003 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.296:0.725,0.253,0.021 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16296108 SNP-3.16294754. C A . PASS AR2=0.998;DR2=0.999;AF=0.449 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.533:0.467,0.533,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16297362 SNP-3.16296008. C A . PASS AR2=0.999;DR2=0.999;AF=0.477 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.089:0.915,0.081,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0.046:0.954,0.046,0 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16298293 SNP-3.16296939. A G . PASS AR2=0.995;DR2=0.996;AF=0.378 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.644:0.382,0.591,0.027 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.628:0.015,0.342,0.643 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.832,0.162,0.006 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16300464 SNP-3.16299110. C A . PASS AR2=1;DR2=1;AF=0.463 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16301802 SNP-3.16300448. C A . PASS AR2=0.985;DR2=0.988;AF=0.437 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|1:1:0,1,0 1|1:1.996:0,0.004,0.996 0|0:0.117:0.886,0.112,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.922:0.001,0.077,0.922 1|0:1.257:0.154,0.436,0.411 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.963 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.829:0.001,0.169,0.83 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.7:0.01,0.28,0.71 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.915:0.001,0.083,0.916 1|1:1.79:0.007,0.195,0.797 1|1:1.621:0.033,0.313,0.654 1|1:1.556:0.046,0.352,0.602 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.879:0.002,0.117,0.881 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.959:0.001,0.04,0.959 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0,0.084,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.003,0.096,0.901 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0,0.06,0.94 1|0:1:0,1,0 1|1:1.822:0.004,0.171,0.825 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|1:0.753:0.264,0.719,0.017 1|1:1.968:0.001,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16305363 SNP-3.16304009. C A . PASS AR2=1;DR2=1;AF=0.444 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16305784 SNP-3.16304430. A G . PASS AR2=1;DR2=1;AF=0.235 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16306048 SNP-3.16304694. C A . PASS AR2=0.996;DR2=0.996;AF=0.462 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0,0.121,0.879 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.106:0.002,0.891,0.108 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.952,0.047,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.149:0.859,0.133,0.008 0|0:0.05:0.95,0.049,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.107:0.898,0.097,0.005 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.09:0.915,0.08,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.913,0.083,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 16307341 SNP-3.16305987. C A . PASS AR2=0.997;DR2=0.998;AF=0.457 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.265:0.735,0.264,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.258:0.742,0.258,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.933,0.067,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16307741 SNP-3.16306387. A G . PASS AR2=1;DR2=1;AF=0.255 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16308213 SNP-3.16306859. A G . PASS AR2=0.999;DR2=0.999;AF=0.265 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.026:0,0.973,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0.051:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.886,0.114,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 +3 16308525 SNP-3.16307171. C A . PASS AR2=0.993;DR2=0.994;AF=0.442 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.044:0.274,0.409,0.318 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0,0.054,0.946 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.469:0.123,0.285,0.592 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.001,0.22,0.779 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16309467 SNP-3.16308113. C A . PASS AR2=0.955;DR2=0.965;AF=0.342 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.218:0.823,0.136,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.598:0.037,0.328,0.635 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|0:1.354:0.033,0.581,0.387 0|0:0:1,0,0 1|1:1.623:0.044,0.288,0.668 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.947:0.142,0.77,0.088 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.314:0.133,0.42,0.447 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0.089:0.918,0.074,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.111:0.894,0.101,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.049:0.952,0.047,0.001 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.58:0.435,0.549,0.016 1|1:2:0,0,1 0|0:0.075:0.932,0.061,0.007 1|1:2:0,0,1 0|0:0.573:0.491,0.445,0.064 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.586:0.533,0.348,0.119 0|0:0.091:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.079:0.192,0.538,0.271 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.053,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.264:0.754,0.227,0.018 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.264:0.754,0.227,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.179:0.837,0.147,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.17:0.115,0.599,0.285 1|1:1.805:0.007,0.182,0.811 0|0:0.058:0.943,0.057,0 0|1:0.914:0.086,0.914,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.857,0.142,0.001 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.716:0.024,0.236,0.74 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.843,0.136,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.921:0.295,0.489,0.216 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.921:0.295,0.489,0.216 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.264:0.754,0.227,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16310777 SNP-3.16309423. A G . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16310932 SNP-3.16309578. A G . PASS AR2=1;DR2=1;AF=0.292 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16314149 SNP-3.16312795. C A . PASS AR2=0.943;DR2=0.957;AF=0.373 GT:DS:GP 1|1:1.889:0.006,0.1,0.895 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.115:0.889,0.107,0.004 1|1:1.889:0.006,0.1,0.895 1|1:2:0,0,1 1|1:1.885:0.005,0.105,0.89 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.881:0.005,0.109,0.886 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.459:0.066,0.409,0.525 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.213:0.118,0.551,0.331 1|1:1.507:0.063,0.367,0.57 1|1:2:0,0,1 0|1:1.51:0.06,0.37,0.57 1|1:1.69:0.031,0.249,0.721 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.752:0.018,0.213,0.769 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.794:0.011,0.184,0.805 0|0:0:1,0,0 0|0:0.081:0.921,0.078,0.002 0|0:0.119:0.885,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.565:0.05,0.336,0.615 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.899,0.099,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.697:0.006,0.292,0.703 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.823:0.2,0.776,0.023 0|0:0:1,0,0 1|1:1.887:0,0.112,0.887 0|0:0:1,0,0 1|0:0.766:0.261,0.711,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.564:0.048,0.341,0.612 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.703:0.016,0.266,0.718 1|0:1.117:0.116,0.652,0.232 1|1:2:0,0,1 0|0:0.054:0.949,0.047,0.003 0|0:0:1,0,0 1|1:1.249:0.11,0.532,0.359 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.007,0.194,0.799 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.459:0.078,0.385,0.537 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.353:0.102,0.444,0.455 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.528:0.057,0.358,0.585 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.604:0.051,0.293,0.655 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 1|1:1.706:0.02,0.253,0.726 1|1:1.45:0.078,0.395,0.527 1|1:1.509:0.06,0.372,0.569 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.005,0.088,0.907 1|1:1.863:0.007,0.124,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.786:0.013,0.189,0.799 0|0:0:1,0,0 1|1:1.784:0.013,0.189,0.798 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.411:0.665,0.259,0.076 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.003,0.075,0.921 0|0:0:1,0,0 0|0:0.052:0.951,0.046,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.086:0.919,0.076,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16315527 SNP-3.16314173. C A . PASS AR2=0.993;DR2=0.994;AF=0.461 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.251:0.147,0.454,0.398 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.187:0.819,0.176,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.001,0.068,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.251:0.147,0.454,0.398 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16317559 SNP-3.16316205. C A . PASS AR2=0.897;DR2=0.922;AF=0.311 GT:DS:GP 1|1:2:0,0,1 1|1:1.9:0.003,0.094,0.903 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.621:0.497,0.384,0.118 1|1:1.81:0.009,0.171,0.819 1|0:0.994:0.233,0.54,0.227 0|0:0:1,0,0 0|1:1.155:0.184,0.477,0.339 1|0:0.936:0.272,0.52,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.328:0.101,0.47,0.429 0|0:0.867:0.323,0.487,0.19 0|1:0.623:0.496,0.384,0.119 0|1:0.643:0.468,0.421,0.111 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.8:0.342,0.517,0.142 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.371:0.659,0.31,0.031 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.103:0.179,0.539,0.282 0|1:1.217:0.128,0.527,0.345 0|1:1.162:0.198,0.442,0.36 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0,0.241,0.759 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.084:0.006,0.905,0.09 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.906,0.087,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.858:0.326,0.49,0.184 1|1:1.894:0.002,0.102,0.896 0|0:0.097:0.903,0.097,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.618:0.499,0.384,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.889:0.005,0.101,0.894 0|0:0.647:0.463,0.426,0.111 1|0:1:0,1,0 1|1:1.505:0.029,0.438,0.533 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.674:0.008,0.31,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.395:0.643,0.319,0.038 0|1:0.632:0.483,0.401,0.116 0|1:0.557:0.533,0.377,0.09 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.662:0.024,0.289,0.687 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.007,0.146,0.847 1|1:2:0,0,1 0|0:0.561:0.527,0.385,0.088 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.112:0.207,0.475,0.319 1|0:0.943:0.297,0.464,0.24 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.278:0.138,0.446,0.416 0|0:0.623:0.496,0.384,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.674,0.292,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.382:0.654,0.309,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.674,0.292,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.674,0.292,0.034 0|0:0:1,0,0 0|0:0.369:0.667,0.298,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.849:0.376,0.399,0.225 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16321861 SNP-3.16320507. C A . PASS AR2=0.992;DR2=0.993;AF=0.436 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.835:0.008,0.149,0.843 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.708:0.421,0.451,0.128 1|1:2:0,0,1 1|0:0.697:0.428,0.448,0.124 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0.001,0.032,0.968 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.708:0.421,0.451,0.128 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16322325 SNP-3.16320971. C A . PASS AR2=0.98;DR2=0.984;AF=0.42 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.093,0.904 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.457:0.08,0.383,0.537 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.853:0.201,0.745,0.054 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.758:0.031,0.18,0.789 1|1:1.792:0.014,0.18,0.806 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.752:0.009,0.229,0.762 1|1:1.808:0.011,0.17,0.819 1|1:1.928:0.002,0.067,0.931 1|1:1.614:0.031,0.324,0.645 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.197:0.816,0.172,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.007,0.141,0.852 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.821:0.027,0.124,0.849 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.119:0.136,0.609,0.255 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.002,0.107,0.891 1|1:2:0,0,1 1|1:1.872:0.006,0.116,0.878 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0.022:0.979,0.02,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.432:0.074,0.419,0.507 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0.002,0.036,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16324424 SNP-3.16323070. A G . PASS AR2=0.999;DR2=0.999;AF=0.313 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.874:0.002,0.122,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.956:0.046,0.953,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16325371 SNP-3.16324017. A G . PASS AR2=1;DR2=1;AF=0.399 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16326374 SNP-3.16325020. C A . PASS AR2=0.999;DR2=0.999;AF=0.449 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0,0.045,0.955 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16330389 SNP-3.16329035. A G . PASS AR2=1;DR2=1;AF=0.434 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16331393 SNP-3.16330039. A G . PASS AR2=0.989;DR2=0.991;AF=0.526 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.003,0.088,0.909 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.805:0.007,0.18,0.813 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.002,0.082,0.917 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.003,0.12,0.877 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.039,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.007,0.149,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.003,0.058,0.939 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.598:0.007,0.387,0.605 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.003,0.118,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.876:0.007,0.111,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.001,0.175,0.823 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:1.982:0,0.017,0.982 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.004,0.188,0.808 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.421:0.018,0.543,0.439 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.005,0.127,0.868 1|1:1.977:0,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16331681 SNP-3.16330327. A G . PASS AR2=0.957;DR2=0.964;AF=0.377 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.007,0.155,0.838 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.554:0.046,0.353,0.601 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.62:0.039,0.302,0.659 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.06,0.938 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.861:0.005,0.13,0.866 1|1:1.871:0.004,0.121,0.875 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.742:0.003,0.252,0.745 1|1:2:0,0,1 1|1:1.528:0.049,0.373,0.578 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.88:0.004,0.112,0.884 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.406:0.062,0.469,0.468 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.021,0.238,0.741 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.198:0.157,0.488,0.355 1|1:2:0,0,1 1|1:1.587:0.046,0.32,0.633 1|1:2:0,0,1 1|1:1.894:0.003,0.1,0.897 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.939:0.288,0.485,0.227 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.938:0.288,0.485,0.227 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.939:0.288,0.485,0.227 0|0:0:1,0,0 0|0:0.938:0.289,0.485,0.226 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.666:0.031,0.271,0.697 1|1:1.821:0.011,0.157,0.832 0|1:1:0,1,0 1|1:1.65:0.03,0.289,0.68 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.614:0.038,0.311,0.651 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.094:0.061,0.784,0.155 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.946 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.136:0.037,0.791,0.172 1|0:1:0,1,0 1|1:1.571:0.042,0.346,0.613 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.816:0.003,0.178,0.819 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16331717 SNP-3.16330363. C A . PASS AR2=0.984;DR2=0.986;AF=0.423 GT:DS:GP 1|1:2:0,0,1 1|1:1.956:0.002,0.041,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.924 1|1:1.91:0.008,0.074,0.918 1|1:1.853:0.007,0.133,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.003,0.096,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.892:0.002,0.104,0.894 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.002,0.096,0.902 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.845:0.003,0.149,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.001,0.182,0.817 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.81:0.021,0.147,0.832 1|1:1.925:0.001,0.073,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.609:0.017,0.357,0.626 1|1:1.838:0.001,0.16,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0.001,0.03,0.969 1|1:1.935:0.001,0.063,0.936 0|0:0:1,0,0 1|1:1.919:0,0.081,0.919 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.923:0.125,0.828,0.048 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.001,0.087,0.912 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.956:0.001,0.041,0.957 0|0:0:1,0,0 1|1:1.851:0.013,0.123,0.864 1|1:1.86:0.001,0.139,0.861 1|1:1.904:0,0.096,0.904 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.002,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.825:0.01,0.154,0.836 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.001,0.154,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.582:0.02,0.378,0.602 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.001,0.054,0.946 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.002,0.07,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16333225 SNP-3.16331871. C A . PASS AR2=0.966;DR2=0.972;AF=0.369 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.727:0.021,0.231,0.748 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.55:0.043,0.364,0.593 0|0:0:1,0,0 0|1:1.7:0.024,0.252,0.724 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.752:0.015,0.219,0.766 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.005,0.08,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.793:0.001,0.205,0.794 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.688:0.023,0.266,0.711 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.739:0.015,0.232,0.754 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.642:0.033,0.292,0.675 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.895:0,0.105,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.833:0.004,0.159,0.837 0|0:0:1,0,0 1|1:1.65:0.032,0.287,0.681 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.053:0.229,0.488,0.282 1|1:1.816:0.007,0.169,0.823 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.658:0.032,0.278,0.69 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.753:0.02,0.206,0.774 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.021,0.265,0.714 1|1:1.789:0.014,0.183,0.803 1|1:1.66:0.023,0.295,0.683 1|1:1.776:0.013,0.197,0.79 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 1|1:1.712:0.022,0.244,0.734 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.016,0.17,0.813 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.725:0.019,0.238,0.743 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.022,0.224,0.754 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.597:0.062,0.279,0.659 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16333844 SNP-3.16332490. A G . PASS AR2=0.918;DR2=0.941;AF=0.361 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.924,0.076,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.367:0.107,0.42,0.473 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.477:0.585,0.352,0.062 0|0:0.647:0.525,0.303,0.172 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.021,0.265,0.714 0|0:0.612:0.421,0.547,0.033 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.307:0.708,0.277,0.015 0|0:0.594:0.483,0.439,0.078 0|0:0:1,0,0 1|1:1.629:0.008,0.355,0.637 1|1:2:0,0,1 0|1:1.262:0.051,0.635,0.313 0|0:0.287:0.727,0.26,0.013 0|0:0:1,0,0 0|0:0.506:0.557,0.38,0.063 1|1:1.901:0.004,0.091,0.905 0|0:0:1,0,0 1|0:1.155:0.177,0.49,0.332 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.409:0.089,0.413,0.498 1|1:2:0,0,1 1|0:0.835:0.288,0.589,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.476:0.069,0.387,0.544 1|1:2:0,0,1 1|0:1.413:0.126,0.335,0.539 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.829,0.164,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.759:0.38,0.481,0.139 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.221:0.143,0.493,0.364 0|1:1.384:0.098,0.421,0.481 0|1:1.117:0.224,0.435,0.341 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.523:0.055,0.367,0.578 0|0:0:1,0,0 1|1:1.381:0.092,0.434,0.474 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.694,0.28,0.026 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.109:0.148,0.594,0.257 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.141:0.087,0.686,0.227 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:1.348:0.108,0.436,0.456 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.711:0.377,0.536,0.087 1|1:2:0,0,1 1|0:1.234:0.079,0.608,0.313 1|0:0.977:0.26,0.502,0.237 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.251:0.138,0.474,0.388 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.741:0.39,0.48,0.131 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.189:0.825,0.162,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.403:0.091,0.415,0.494 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16334375 SNP-3.16333021. A G . PASS AR2=1;DR2=1;AF=0.327 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16334945 SNP-3.16333591. C A . PASS AR2=0.952;DR2=0.963;AF=0.37 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.67:0.035,0.259,0.705 1|1:2:0,0,1 0|0:0.002:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.002,0.097,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.633:0.037,0.293,0.67 1|1:1.703:0.026,0.245,0.729 1|1:1.622:0.045,0.287,0.668 1|1:2:0,0,1 1|1:1.632:0.037,0.294,0.669 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.563:0.063,0.312,0.626 1|1:2:0,0,1 1|1:1.649:0.033,0.285,0.682 0|0:0:1,0,0 1|1:1.775:0.01,0.204,0.785 1|1:1.84:0.007,0.145,0.848 0|1:1:0,1,0 1|1:1.689:0.023,0.264,0.713 1|1:1.761:0.015,0.21,0.776 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.69:0.024,0.263,0.713 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.826:0.007,0.161,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.553:0.048,0.351,0.601 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.011,0.162,0.827 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|0:1.593:0.041,0.325,0.634 1|1:1.758:0.015,0.212,0.773 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.009,0.175,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.713:0.021,0.246,0.733 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.006,0.153,0.842 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.001,0.081,0.918 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.56:0.052,0.335,0.613 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.901:0.004,0.092,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.562:0.004,0.429,0.566 0|0:0:1,0,0 1|1:1.936:0.001,0.062,0.937 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.537:0.072,0.319,0.609 1|1:1.758:0.015,0.212,0.773 0|1:1.273:0.177,0.374,0.45 0|0:0:1,0,0 1|1:1.958:0.002,0.038,0.96 1|1:2:0,0,1 1|1:1.731:0.032,0.204,0.763 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.002,0.052,0.946 1|0:1.477:0.092,0.34,0.569 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16338196 SNP-3.16336842. C A . PASS AR2=0.99;DR2=0.991;AF=0.42 GT:DS:GP 1|1:1.939:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.086,0.912 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.884:0.003,0.111,0.887 0|1:1:0,1,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0.052:0.95,0.047,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.091:0.912,0.086,0.003 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0.02:0.98,0.02,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.103:0.901,0.095,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0,0.045,0.954 1|1:2:0,0,1 0|0:0.241:0.776,0.207,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.069:0.933,0.066,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.919,0.079,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.005,0.157,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0,0.06,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.9,0.097,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.147,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16339322 SNP-3.16337968. C A . PASS AR2=0.979;DR2=0.982;AF=0.375 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.301:0.053,0.594,0.354 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.003,0.094,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.004,0.112,0.883 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.867:0.002,0.13,0.868 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.005,0.138,0.857 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.188:0.163,0.486,0.351 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.012,0.218,0.77 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.005,0.158,0.837 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.005,0.132,0.863 1|1:1.922:0.002,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.004,0.118,0.878 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.001,0.087,0.911 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.593:0.047,0.312,0.641 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.968:0.001,0.031,0.968 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.003,0.09,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.003,0.096,0.901 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.816:0.009,0.166,0.825 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.682:0.026,0.265,0.708 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0,0.05,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.921:0.003,0.074,0.924 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.009,0.164,0.827 0|0:0:1,0,0 1|1:1.818:0.009,0.164,0.827 0|0:0:1,0,0 1|1:1.815:0.009,0.167,0.824 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.006,0.124,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.006,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 +3 16340091 SNP-3.16338737. A G . PASS AR2=0.984;DR2=0.988;AF=0.422 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.52:0.552,0.377,0.072 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.006,0.145,0.849 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.847:0.006,0.141,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.005,0.126,0.869 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.807:0.201,0.79,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.788:0.012,0.187,0.801 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.594:0.042,0.323,0.636 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.836:0.007,0.15,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.589:0.033,0.346,0.622 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.791:0.012,0.186,0.802 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.864:0.005,0.125,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.825:0.008,0.16,0.833 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.01,0.178,0.812 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16340649 SNP-3.16339295. A G . PASS AR2=0.996;DR2=0.996;AF=0.193 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.905:0,0.095,0.905 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|1:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.014:0.986,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|1:1:0,1,0 0|0:0.013:0.987,0.013,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.002,0.063,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.08:0.92,0.08,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16341869 SNP-3.16340515. C A . PASS AR2=0.997;DR2=0.998;AF=0.425 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.65,0.346,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16342531 SNP-3.16341177. A G . PASS AR2=0.993;DR2=0.994;AF=0.419 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.005,0.111,0.885 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.884:0.001,0.114,0.885 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.925:0.002,0.071,0.927 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.898:0.003,0.097,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.011,0.24,0.749 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.006,0.15,0.844 1|1:2:0,0,1 1|1:1.892:0.003,0.103,0.895 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.899:0.002,0.097,0.901 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0.001,0.034,0.965 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.877:0.004,0.114,0.881 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.069,0.929 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16342579 SNP-3.16341225. A G . PASS AR2=0.994;DR2=0.995;AF=0.428 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.007:0.993,0.007,0 1|1:1.784:0.012,0.192,0.796 1|1:1.87:0.007,0.115,0.878 1|1:2:0,0,1 1|1:1.908:0.003,0.086,0.911 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.006:0.994,0.006,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.094:0.909,0.087,0.004 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 1|1:1.972:0,0.028,0.972 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:1.976:0,0.023,0.976 0|1:1:0,1,0 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.991:0.009,0.991,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:1.886:0,0.113,0.886 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:1.781:0.013,0.194,0.793 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16342932 SNP-3.16341578. C A . PASS AR2=0.981;DR2=0.985;AF=0.384 GT:DS:GP 1|1:2:0,0,1 1|1:1.915:0,0.084,0.915 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.946:0.002,0.049,0.949 0|0:0:1,0,0 1|1:1.886:0.005,0.104,0.891 1|1:1.811:0.007,0.175,0.818 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.004,0.127,0.869 1|1:1.427:0.03,0.513,0.457 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0,0.121,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.001,0.094,0.906 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0,0.065,0.935 1|1:1.734:0.001,0.264,0.735 0|0:0:1,0,0 0|1:1.319:0.093,0.495,0.412 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.928:0.002,0.069,0.93 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.661:0.03,0.279,0.691 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.622:0.016,0.346,0.638 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.888:0.002,0.107,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.003,0.079,0.919 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.533:0.007,0.454,0.539 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.618:0.041,0.3,0.659 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.904:0.004,0.088,0.908 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16345758 SNP-3.16344404. C A . PASS AR2=0.973;DR2=0.978;AF=0.39 GT:DS:GP 1|1:1.949:0.002,0.046,0.952 1|1:1.919:0.001,0.08,0.92 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.867:0.004,0.124,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.633:0.031,0.305,0.664 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.525:0.609,0.257,0.134 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.213:0.098,0.59,0.312 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.002,0.143,0.856 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.869:0.001,0.129,0.87 1|1:1.845:0.002,0.152,0.847 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.773:0.015,0.198,0.787 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.956:0.001,0.041,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.023,0.248,0.729 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.744:0.256,0.744,0 0|0:0:1,0,0 1|1:1.94:0,0.059,0.94 0|0:0:1,0,0 1|1:1.74:0.004,0.252,0.744 0|0:0:1,0,0 1|1:1.819:0.009,0.163,0.828 0|0:0:1,0,0 1|1:1.873:0.004,0.119,0.877 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0.024,0.251,0.725 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.653:0.024,0.3,0.676 1|1:2:0,0,1 1|1:1.826:0.008,0.158,0.834 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.18:0.82,0.18,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.002,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.497:0.061,0.38,0.558 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.694:0.027,0.252,0.721 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.002,0.081,0.917 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.042,0.957 1|1:1.904:0.002,0.091,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.956,0.042,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.888:0.005,0.103,0.893 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16346000 SNP-3.16344646. A G . PASS AR2=0.921;DR2=0.933;AF=0.27 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.176:0.171,0.483,0.346 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.648,0.304,0.049 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.745,0.236,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.252:0.146,0.456,0.398 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.109:0.195,0.502,0.304 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.428:0.645,0.283,0.072 0|1:1.106:0.196,0.502,0.302 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.034:0.233,0.5,0.267 0|0:0.125:0.876,0.122,0.002 0|0:0.467:0.6,0.332,0.067 1|0:1.089:0.21,0.491,0.299 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.805:0.347,0.501,0.152 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.892:0.27,0.567,0.162 0|1:1.07:0.219,0.491,0.29 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.402:0.169,0.26,0.571 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.897,0.102,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.419:0.637,0.306,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.16,0.007 0|0:0.178:0.829,0.164,0.007 0|0:0:1,0,0 0|0:0.174:0.835,0.156,0.009 0|0:0.126:0.881,0.113,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.839,0.153,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.828:0.327,0.518,0.155 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.85,0.146,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.915,0.083,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.248:0.767,0.219,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.789,0.196,0.016 0|0:0.084:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.86,0.132,0.008 0|0:0.035:0.965,0.034,0.001 1|1:2:0,0,1 0|0:0.131:0.876,0.118,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.14:0.184,0.493,0.324 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.022:0.244,0.49,0.266 0|1:0.872:0.313,0.502,0.185 0|0:0.226:0.789,0.195,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.874,0.122,0.004 0|0:0:1,0,0 0|0:0.311:0.711,0.267,0.022 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.652:0.463,0.422,0.115 1|0:1.149:0.007,0.836,0.157 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.307:0.721,0.251,0.028 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0,0.063,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.141:0.178,0.503,0.319 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16349441 SNP-3.16348087. A G . PASS AR2=0.993;DR2=0.995;AF=0.314 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:1.958:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0.001,0.07,0.928 0|1:1.552:0.011,0.426,0.563 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.977:0.023,0.977,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.004,0.135,0.861 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.336:0.046,0.573,0.382 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16352546 SNP-3.16351192. C A . PASS AR2=0.962;DR2=0.97;AF=0.399 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.694:0.027,0.252,0.721 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.63:0.033,0.303,0.664 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.702:0.025,0.249,0.727 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.886:0.002,0.11,0.888 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.053:0.099,0.749,0.152 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.004,0.068,0.927 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.534:0.538,0.391,0.072 1|1:1.751:0.028,0.192,0.78 1|1:2:0,0,1 1|1:1.805:0.009,0.177,0.814 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.837:0.007,0.15,0.843 1|1:1.562:0.166,0.105,0.728 1|1:1.561:0.06,0.319,0.621 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.107:0.9,0.093,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.188:0.105,0.601,0.293 0|0:0:1,0,0 1|1:1.877:0.002,0.119,0.879 0|0:0:1,0,0 1|1:1.671:0.027,0.275,0.698 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.648:0.038,0.276,0.686 1|1:1.662:0.03,0.277,0.693 1|1:2:0,0,1 1|1:1.751:0.022,0.205,0.773 1|1:2:0,0,1 0|0:0.24:0.763,0.233,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.017,0.282,0.701 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.745:0.02,0.216,0.765 1|1:1.882:0.004,0.11,0.886 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.854:0.007,0.131,0.861 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.708:0.013,0.266,0.721 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:1.683:0.057,0.202,0.74 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.001,0.078,0.921 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.007,0.125,0.869 0|0:0:1,0,0 1|1:1.862:0.007,0.125,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.009,0.151,0.84 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.007,0.127,0.866 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.01,0.152,0.838 0|0:0:1,0,0 +3 16353769 SNP-3.16352415. C A . PASS AR2=0.937;DR2=0.953;AF=0.4 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.43:0.082,0.406,0.512 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.467:0.063,0.406,0.53 1|1:2:0,0,1 1|1:1.735:0.017,0.231,0.752 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.026:0.125,0.725,0.151 0|0:0:1,0,0 1|1:1.286:0.114,0.485,0.401 0|1:1.176:0.082,0.66,0.258 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.736:0.017,0.229,0.753 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.21:0.176,0.437,0.386 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.013,0.161,0.826 1|1:1.27:0.17,0.389,0.441 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.016,0.161,0.823 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.002,0.109,0.889 1|1:2:0,0,1 1|1:1.774:0.003,0.221,0.777 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.73:0.003,0.265,0.733 0|0:0:1,0,0 0|1:1.222:0.156,0.467,0.378 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.008,0.12,0.872 1|1:2:0,0,1 1|1:1.575:0.039,0.347,0.614 1|1:1.421:0.097,0.385,0.518 0|0:0:1,0,0 1|1:1.939:0,0.061,0.939 0|0:0.076:0.925,0.073,0.001 1|0:1.578:0,0.422,0.578 0|0:0:1,0,0 1|1:1.845:0,0.155,0.845 0|0:0:1,0,0 1|1:1.545:0.026,0.403,0.571 0|0:0:1,0,0 1|1:1.818:0.012,0.157,0.83 0|0:0:1,0,0 1|1:1.861:0.004,0.132,0.865 0|0:0.033:0.968,0.032,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.012,0.112,0.876 0|0:0:1,0,0 1|1:1.622:0.034,0.311,0.656 1|1:1.482:0.051,0.416,0.533 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.56:0.058,0.323,0.618 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.833:0.008,0.15,0.842 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0,0.072,0.928 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.833:0.009,0.149,0.842 1|1:2:0,0,1 1|1:1.784:0.014,0.188,0.798 1|1:1.896:0.003,0.097,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.03,0.255,0.715 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.527:0.05,0.373,0.577 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.105:0.897,0.101,0.002 0|0:0:1,0,0 0|0:0.081:0.921,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.863:0.008,0.12,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.674:0.011,0.303,0.685 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.703:0.029,0.24,0.732 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 0|0:0.67:0.537,0.256,0.207 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.077,0.921 0|0:0:1,0,0 +3 16356870 SNP-3.16355516. A G . PASS AR2=0.953;DR2=0.964;AF=0.448 GT:DS:GP 0|0:0.099:0.904,0.094,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.369:0.664,0.304,0.032 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.263:0.755,0.227,0.018 0|0:0:1,0,0 1|1:1.527:0.058,0.356,0.585 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.094:0.908,0.09,0.002 0|0:0.216:0.795,0.194,0.011 1|1:1.882:0.004,0.111,0.885 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.14:0.864,0.131,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.893:0.003,0.101,0.896 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.004,0.118,0.878 0|0:0.356:0.677,0.289,0.033 0|0:0.609:0.493,0.405,0.102 1|1:1.904:0.002,0.091,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.004,0.115,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.998:0.012,0.978,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.996:0.013,0.978,0.009 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.979:0.034,0.953,0.013 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.884:0.003,0.109,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.441:0.61,0.339,0.051 0|0:0:1,0,0 1|0:0.827:0.329,0.516,0.155 0|0:0:1,0,0 0|0:0.151:0.849,0.151,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.809,0.191,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.833,0.159,0.008 0|0:0.34:0.719,0.223,0.058 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.437:0.63,0.303,0.067 0|0:0:1,0,0 1|1:1.965:0.001,0.033,0.966 1|1:1.763:0.019,0.199,0.782 1|1:1.76:0.005,0.23,0.765 0|1:1:0,1,0 1|1:1.892:0.003,0.102,0.895 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.908,0.088,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.429:0.619,0.333,0.048 1|0:1:0,1,0 0|0:0.415:0.627,0.332,0.041 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.893,0.107,0.001 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.044,0.333,0.623 1|1:1.858:0.005,0.132,0.863 0|1:1.52:0.06,0.359,0.58 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.002,0.088,0.909 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.631,0.323,0.046 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.938,0.056,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.905,0.092,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 0|1:1:0,1,0 +3 16359129 SNP-3.16357775. C A . PASS AR2=0.936;DR2=0.952;AF=0.404 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.43:0.076,0.419,0.505 1|1:1.532:0.069,0.33,0.601 1|1:1.777:0.014,0.194,0.792 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.093,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.093:0.908,0.09,0.002 0|0:0:1,0,0 0|1:1.182:0.075,0.668,0.257 0|1:0.988:0.087,0.838,0.075 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.478:0.055,0.412,0.533 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.006,0.134,0.86 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.686:0.011,0.292,0.697 1|1:1.383:0.115,0.388,0.497 0|0:0:1,0,0 0|0:0.123:0.881,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.878,0.118,0.003 0|1:0.829:0.292,0.587,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.849,0.149,0.002 0|0:0:1,0,0 0|0:0.108:0.895,0.103,0.003 0|0:0:1,0,0 0|0:0.18:0.829,0.163,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.129,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.035,0.001 0|0:0.083:0.92,0.078,0.003 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.988:0.013,0.986,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|1:1.13:0.005,0.859,0.136 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.952:0.057,0.934,0.009 0|0:0.017:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.006,0.113,0.881 0|1:1.37:0.089,0.452,0.459 1|1:1.6:0.049,0.301,0.649 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.672:0.328,0.672,0 0|0:0.2:0.811,0.178,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.638:0.017,0.327,0.656 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.868:0.005,0.122,0.873 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.869,0.128,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.581:0.034,0.351,0.615 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.553:0.064,0.319,0.617 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.811,0.178,0.011 0|0:0.171:0.836,0.157,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.71:0.024,0.242,0.734 0|0:0.095:0.905,0.095,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.519:0.548,0.386,0.066 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.412:0.625,0.338,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.811,0.178,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.342:0.068,0.522,0.41 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.511:0.525,0.44,0.036 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.2:0.811,0.178,0.011 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.436:0.593,0.379,0.028 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.811,0.178,0.011 0|0:0.179:0.83,0.161,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.07:0.932,0.065,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.2:0.809,0.181,0.01 1|1:1.726:0.009,0.257,0.735 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.274:0.731,0.264,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16359580 SNP-3.16358226. C A . 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A G . 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A G . PASS AR2=0.988;DR2=0.99;AF=0.474 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.001,0.065,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.955:0,0.044,0.955 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.29:0.011,0.687,0.301 1|1:2:0,0,1 0|0:0.08:0.92,0.08,0 1|1:1.978:0,0.021,0.978 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|0:1.556:0.008,0.427,0.565 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.001,0.076,0.923 1|1:1.963:0,0.036,0.963 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|1:1.941:0.002,0.055,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0,0.034,0.965 1|1:2:0,0,1 1|1:1.94:0.001,0.059,0.94 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.763:0.012,0.213,0.775 1|1:1.957:0,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.008,0.226,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.005,0.127,0.868 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.785:0.007,0.201,0.792 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0.001,0.021,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.976 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.972 1|1:1.953:0.001,0.046,0.954 0|0:0:1,0,0 0|1:1:0,1,0 +3 16361683 SNP-3.16360329. A G . PASS AR2=0.939;DR2=0.961;AF=0.223 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.664:0.367,0.602,0.031 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.372:0.1,0.428,0.472 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.463:0.075,0.387,0.538 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.213:0.159,0.469,0.372 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.475:0.07,0.386,0.545 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.372:0.1,0.428,0.472 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.57:0.05,0.329,0.621 1|1:1.44:0.079,0.402,0.519 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.706,0.294,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.406:0.091,0.412,0.497 1|1:1.388:0.092,0.429,0.48 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.35:0.107,0.435,0.457 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.483:0.07,0.376,0.553 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16366254 SNP-3.16383185. C A . PASS AR2=0.995;DR2=0.996;AF=0.462 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.001,0.051,0.948 1|0:1:0,1,0 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.002,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.335:0,0.665,0.335 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.007,0.122,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.002,0.079,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0,0.055,0.944 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.926:0.002,0.07,0.928 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16368468 SNP-3.16380971. C A . PASS AR2=0.961;DR2=0.967;AF=0.447 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.943,0.055,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.006,0.104,0.89 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.914:0.32,0.446,0.234 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.466:0.077,0.379,0.543 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.057:0.945,0.053,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.023:0.238,0.501,0.261 1|1:1.802:0.004,0.189,0.807 1|1:2:0,0,1 0|1:0.978:0.264,0.495,0.241 1|0:1.466:0.077,0.379,0.543 1|1:2:0,0,1 1|1:1.466:0.077,0.379,0.543 1|1:2:0,0,1 0|0:0.094:0.909,0.087,0.004 1|0:1.001:0.002,0.995,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.443:0.568,0.422,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.009:0.991,0.009,0 1|0:0.947:0.279,0.494,0.226 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.926:0.002,0.071,0.927 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:0.995:0.261,0.482,0.256 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.026:0.263,0.447,0.289 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.079:0.214,0.493,0.293 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|0:0.855:0.339,0.467,0.194 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.466:0.077,0.379,0.543 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.783:0.359,0.498,0.143 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.057:0.945,0.053,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.967:0.26,0.512,0.227 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16379310 SNP-3.16370129. C A . PASS AR2=1;DR2=1;AF=0.424 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16394336 SNP-3.16392980. A G . PASS AR2=0.889;DR2=0.918;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.608:0.046,0.299,0.654 1|1:1.59:0.043,0.323,0.633 1|1:1.722:0.039,0.2,0.761 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.475:0.044,0.436,0.519 1|1:1.162:0.179,0.48,0.341 1|1:1.514:0.067,0.352,0.581 0|0:0:1,0,0 1|0:1.247:0.109,0.535,0.356 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.011:0.221,0.547,0.232 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.566:0.063,0.308,0.629 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.479:0.068,0.385,0.547 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.343:0.103,0.45,0.447 0|0:0:1,0,0 0|0:0.457:0.6,0.342,0.058 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.481:0.067,0.384,0.549 1|1:1.989:0,0.01,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|0:1.458:0.031,0.48,0.489 0|0:0:1,0,0 1|1:1.479:0.068,0.385,0.547 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.598:0.051,0.301,0.648 1|1:1.481:0.067,0.384,0.549 1|1:1.479:0.068,0.385,0.547 0|0:0:1,0,0 1|1:1.479:0.068,0.385,0.547 1|1:2:0,0,1 1|1:1.483:0.067,0.383,0.55 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.413:0.603,0.382,0.016 0|0:0:1,0,0 0|1:1.216:0.122,0.54,0.338 0|0:0:1,0,0 1|1:1.483:0.067,0.383,0.55 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.662:0.471,0.395,0.134 0|1:0.781:0.343,0.533,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.477:0.068,0.386,0.545 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.166:0.168,0.498,0.334 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.414:0.106,0.375,0.52 1|1:1.478:0.068,0.385,0.547 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0.023,0.143,0.833 1|1:1.762:0.014,0.211,0.776 1|1:1.283:0.107,0.502,0.391 1|1:2:0,0,1 1|1:1.732:0.002,0.264,0.734 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.481:0.067,0.384,0.548 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.034:0.286,0.394,0.32 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.709:0.024,0.243,0.733 0|0:0:1,0,0 1|1:1.591:0.055,0.299,0.646 1|1:1.589:0.048,0.316,0.637 0|0:0.504:0.572,0.352,0.076 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.034,0.209,0.757 1|0:1.28:0.094,0.531,0.374 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.326:0.046,0.581,0.372 1|1:1.481:0.067,0.384,0.549 0|0:0:1,0,0 1|1:1.623:0.054,0.269,0.677 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.392:0.091,0.426,0.483 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.702:0.03,0.238,0.732 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.478:0.068,0.385,0.547 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.48:0.068,0.385,0.548 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.907:0.305,0.482,0.213 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16399536 SNP-3.16398180. C A . PASS AR2=1;DR2=1;AF=0.465 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16399742 SNP-3.16398386. A G . PASS AR2=0.983;DR2=0.986;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.086:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.657:0.032,0.279,0.689 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.853,0.141,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.004,0.114,0.882 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.025:0.975,0.024,0 1|0:1:0,1,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.5:0.591,0.319,0.091 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.235:0.8,0.166,0.035 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.825,0.165,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.136:0.872,0.12,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.798,0.192,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.002,0.116,0.883 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.941,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 +3 16400147 SNP-3.16398791. A G . PASS AR2=0.989;DR2=0.991;AF=0.489 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:1.952:0.002,0.045,0.953 1|1:1.783:0.009,0.199,0.792 1|1:1.915:0.003,0.079,0.918 1|1:1.656:0.037,0.269,0.694 0|0:0:1,0,0 1|1:1.632:0.013,0.342,0.645 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.957:0.001,0.042,0.958 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:1.979:0,0.021,0.979 1|1:1.737:0.018,0.227,0.755 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.005,0.995 1|1:1.892:0.007,0.094,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.755:0.015,0.214,0.77 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.875:0,0.124,0.875 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.862:0,0.137,0.863 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.065,0.935 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.737:0.018,0.228,0.755 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16400449 SNP-3.16399093. A G . PASS AR2=0.95;DR2=0.964;AF=0.257 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.395:0.644,0.317,0.039 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.112:0.893,0.102,0.005 0|0:0.016:0.985,0.015,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.847:0.001,0.152,0.848 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0.001,0.034,0.965 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.957,0.043,0.001 1|1:2:0,0,1 1|1:1.962:0.001,0.035,0.963 1|1:1.935:0.001,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.394:0.645,0.316,0.039 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.394:0.645,0.316,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.673:0.458,0.41,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.129:0.872,0.127,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.713,0.256,0.031 0|0:0.394:0.645,0.316,0.039 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.098:0.908,0.086,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.968,0.031,0.001 0|0:0.354:0.646,0.354,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.965:0.217,0.601,0.182 0|0:0.077:0.924,0.076,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0.436:0.615,0.335,0.05 0|0:0:1,0,0 0|0:0.435:0.615,0.335,0.05 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.073:0.927,0.073,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.394:0.645,0.316,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.239:0.766,0.23,0.005 0|0:0.409:0.633,0.325,0.042 0|0:0:1,0,0 0|0:0.394:0.645,0.316,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.394:0.645,0.316,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.396:0.643,0.318,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.249:0.768,0.214,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.394:0.645,0.316,0.039 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.001,0.138,0.861 0|0:0:1,0,0 1|1:2:0,0,1 +3 16400652 SNP-3.16399296. C A . PASS AR2=0.984;DR2=0.988;AF=0.481 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.827,0.163,0.01 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0,0.041,0.959 0|0:0.208:0.801,0.189,0.009 0|0:0.248:0.758,0.237,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 1|1:1.866:0.008,0.118,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.515:0.052,0.381,0.567 1|1:2:0,0,1 1|1:1.794:0.002,0.202,0.796 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.342:0.688,0.281,0.03 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.764,0.222,0.014 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.129:0.875,0.12,0.004 0|0:0.361:0.664,0.311,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.036,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0,0.061,0.939 1|1:1.962:0.002,0.034,0.964 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0.227:0.784,0.205,0.011 1|1:1.828:0,0.172,0.828 0|0:0:1,0,0 +3 16400670 SNP-3.16399314. C A . PASS AR2=0.993;DR2=0.995;AF=0.448 GT:DS:GP 1|1:1.907:0,0.093,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.995:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0,0.065,0.935 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.69:0.039,0.232,0.729 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0.001,0.167,0.832 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|0:1.339:0.074,0.513,0.413 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.983:0,0.016,0.984 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.69:0.039,0.232,0.729 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16400718 SNP-3.16399362. C A . PASS AR2=0.996;DR2=0.997;AF=0.429 GT:DS:GP 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.05,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.175:0.833,0.158,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.101:0.902,0.094,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.633:0.002,0.364,0.634 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 16401184 SNP-3.16399828. C A . PASS AR2=0.986;DR2=0.988;AF=0.41 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0.001,0.03,0.969 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:1.967:0.001,0.032,0.967 0|0:0:1,0,0 1|1:1.96:0.001,0.038,0.961 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.003,0.104,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.003,0.181,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.619:0.084,0.213,0.703 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.003,0.097,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.955:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:1.881:0.001,0.118,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0,0.103,0.897 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|1:0.966:0.034,0.966,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.902:0.004,0.09,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.79:0.001,0.207,0.791 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.72:0.027,0.226,0.747 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.752:0.008,0.232,0.76 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.899:0.003,0.096,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.245:0.043,0.67,0.287 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.823:0.193,0.791,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16407522 SNP-3.16406166. C A . PASS AR2=0.998;DR2=0.999;AF=0.264 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.751:0.019,0.21,0.771 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16410397 SNP-3.16409041. A G . PASS AR2=0.942;DR2=0.956;AF=0.496 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.002,0.065,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.208:0.148,0.497,0.355 1|0:1.073:0.226,0.474,0.299 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.922:0.003,0.072,0.925 0|0:0:1,0,0 1|0:1.27:0.087,0.556,0.357 1|1:2:0,0,1 1|1:1.645:0.034,0.286,0.679 1|1:1.863:0.006,0.125,0.869 1|0:1.4:0.021,0.558,0.421 0|1:1.412:0.019,0.55,0.431 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.673:0.026,0.276,0.698 1|0:1.459:0.067,0.406,0.526 1|1:1.092:0.206,0.497,0.297 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.002,0.064,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.637:0.033,0.296,0.671 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.01,0.287,0.703 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.924:0.002,0.072,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.651:0.031,0.288,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.01,0.177,0.813 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.87:0.004,0.123,0.873 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.007,0.099,0.894 0|1:1.157:0.161,0.52,0.319 1|0:1.581:0.034,0.351,0.615 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.313:0.136,0.416,0.449 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.445:0.083,0.389,0.528 1|1:1.728:0.01,0.252,0.738 1|1:2:0,0,1 1|0:1.303:0.106,0.485,0.409 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.002,0.075,0.923 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.914:0.002,0.082,0.916 1|0:1.32:0.078,0.524,0.398 0|0:0:1,0,0 1|1:1.52:0.041,0.399,0.56 1|0:1.064:0.216,0.505,0.279 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.002,0.075,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.637:0.033,0.296,0.671 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.921 1|1:1.73:0.001,0.268,0.731 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.821:0.008,0.163,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.519:0.063,0.354,0.583 0|0:0:1,0,0 1|0:1.407:0.019,0.554,0.426 +3 16411046 SNP-3.16409690. C A . PASS AR2=0.99;DR2=0.993;AF=0.478 GT:DS:GP 1|1:1.911:0.001,0.086,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.961:0.001,0.038,0.962 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:1.327:0.123,0.427,0.45 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.123:0.885,0.107,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.007,0.182,0.811 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.006,0.134,0.86 1|1:1.905:0.003,0.089,0.908 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.872:0.009,0.11,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.812:0.009,0.169,0.822 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.001,0.074,0.926 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0.002,0.076,0.921 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.192:0.809,0.19,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 16412003 SNP-3.16410647. C A . PASS AR2=0.991;DR2=0.992;AF=0.28 GT:DS:GP 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.891:0.001,0.106,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.116:0.887,0.11,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0.243:0.758,0.241,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.751:0.021,0.206,0.772 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.267:0.756,0.222,0.022 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.013:0.987,0.013,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.105,0.003 0|0:0.208:0.795,0.202,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16414648 SNP-3.16413292. C A . PASS AR2=0.991;DR2=0.994;AF=0.474 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.127:0.877,0.119,0.004 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.286:0.716,0.283,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:0.62:0.541,0.298,0.161 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.123:0.88,0.117,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0.393:0.647,0.313,0.04 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16415105 SNP-3.16413749. A G . PASS AR2=0.882;DR2=0.905;AF=0.396 GT:DS:GP 0|0:0.218:0.785,0.212,0.003 0|0:0:1,0,0 0|0:0.25:0.776,0.198,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.696:0.023,0.258,0.719 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 0|1:1.006:0.218,0.558,0.224 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.292:0.125,0.457,0.418 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.923:0.246,0.586,0.169 1|1:1.381:0.098,0.424,0.478 0|1:0.554:0.519,0.408,0.073 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.02:0.244,0.492,0.264 0|0:0:1,0,0 0|0:0.602:0.485,0.429,0.087 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.238:0.125,0.512,0.363 0|0:0.495:0.555,0.394,0.05 0|1:0.892:0.255,0.597,0.147 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.029:0.233,0.506,0.262 0|1:1.319:0.106,0.47,0.424 1|1:1.066:0.217,0.5,0.283 1|0:1.309:0.12,0.451,0.429 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.023,0.258,0.719 1|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 0|0:0.212:0.813,0.162,0.025 0|1:0.713:0.386,0.515,0.099 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.331:0.079,0.511,0.41 1|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 1|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.693:0.024,0.26,0.717 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.018,0.237,0.745 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 1|1:1.206:0.118,0.558,0.324 1|1:1.693:0.024,0.26,0.716 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.001:0.243,0.514,0.244 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.35:0.077,0.496,0.427 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.539:0.048,0.365,0.587 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.934,0.061,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.031:0.238,0.494,0.268 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.974:0.223,0.58,0.197 1|1:1.277:0.128,0.466,0.406 1|0:0.686:0.405,0.505,0.091 1|1:2:0,0,1 0|0:1.02:0.244,0.492,0.264 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.82,0.151,0.029 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.924:0.237,0.602,0.161 1|1:2:0,0,1 0|1:1.106:0.185,0.525,0.291 1|1:2:0,0,1 0|1:0.44:0.619,0.322,0.059 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.337:0.691,0.281,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.338:0.109,0.443,0.448 0|1:0.913:0.259,0.568,0.173 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.974,0.025,0.001 0|1:0.544:0.459,0.538,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.629:0.033,0.304,0.663 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.024,0.26,0.717 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.972:0.268,0.493,0.24 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.972:0.268,0.493,0.24 0|0:0:1,0,0 1|0:0.616:0.482,0.42,0.098 0|1:0.968:0.267,0.498,0.235 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.441:0.621,0.317,0.062 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.696:0.023,0.258,0.719 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.426:0.053,0.469,0.478 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.97:0.266,0.498,0.236 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 +3 16417170 SNP-3.16415814. A G . PASS AR2=0.993;DR2=0.996;AF=0.438 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.844:0.006,0.143,0.85 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.341:0.109,0.442,0.449 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.938:0.077,0.909,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.938:0.077,0.909,0.014 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.939:0.077,0.908,0.016 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 16417403 SNP-3.16416047. C A . PASS AR2=0.996;DR2=0.997;AF=0.385 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.014,0.198,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.105:0.205,0.485,0.31 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16417511 SNP-3.16416155. A G . PASS AR2=0.993;DR2=0.995;AF=0.448 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.242:0.005,0.748,0.247 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.003:0,0.997,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.149:0.006,0.84,0.155 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.189:0.005,0.801,0.194 1|1:1.444:0.077,0.401,0.522 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.003:0.001,0.996,0.003 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.004:0,0.996,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.163:0.005,0.826,0.169 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 16417802 SNP-3.16416446. C A . PASS AR2=0.997;DR2=0.997;AF=0.423 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.062:0.939,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.009,0.185,0.805 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.762:0.013,0.211,0.776 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.003,0.089,0.908 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.03,0.97 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16419503 SNP-3.16418147. C A . PASS AR2=0.941;DR2=0.957;AF=0.322 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.908:0.004,0.085,0.912 0|0:0:1,0,0 1|1:1.897:0.004,0.095,0.901 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.152:0.168,0.513,0.319 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.34:0.109,0.442,0.449 0|0:0.43:0.582,0.407,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.055:0.235,0.476,0.29 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.218:0.025,0.733,0.242 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.928:0.003,0.066,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.012,0.177,0.811 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.707:0.293,0.707,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.568:0.015,0.402,0.583 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.373:0.1,0.427,0.473 1|1:1.925:0.003,0.068,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.004,0.096,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.324:0.116,0.444,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.083:0.128,0.662,0.21 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.752:0.015,0.218,0.767 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.005,0.075,0.92 0|0:0:1,0,0 0|1:1.345:0.113,0.429,0.458 0|0:0:1,0,0 1|0:1.358:0.107,0.428,0.465 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.092:0.172,0.564,0.264 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.573:0.078,0.271,0.651 0|1:1.211:0.133,0.523,0.344 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.541:0.07,0.32,0.61 1|1:1.617:0.036,0.311,0.653 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.365:0.652,0.331,0.017 0|0:0:1,0,0 0|0:0.152:0.861,0.126,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.451:0.583,0.382,0.034 0|0:0:1,0,0 0|0:0.211:0.802,0.186,0.013 1|1:1.668:0.023,0.286,0.691 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.038,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.728:0.047,0.179,0.774 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.86,0.127,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16420292 SNP-3.16418936. C A . PASS AR2=0.974;DR2=0.983;AF=0.379 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.388:0.095,0.422,0.483 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.328:0.11,0.452,0.438 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.046,0.349,0.605 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.4:0.074,0.452,0.474 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.457:0.076,0.392,0.533 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.341:0.11,0.44,0.451 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.455:0.076,0.393,0.531 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.285:0.132,0.451,0.417 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.644:0.037,0.283,0.681 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16421225 SNP-3.16419869. A G . PASS AR2=1;DR2=1;AF=0.216 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16422830 SNP-3.16421474. C A . PASS AR2=1;DR2=1;AF=0.259 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16425653 SNP-3.16424297. C A . PASS AR2=1;DR2=1;AF=0.449 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16427008 SNP-3.16425652. C A . PASS AR2=0.999;DR2=1;AF=0.479 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16428179 SNP-3.16426823. C A . PASS AR2=1;DR2=1;AF=0.488 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16431723 SNP-3.16430367. A G . PASS AR2=0.985;DR2=0.988;AF=0.456 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:1.586:0.045,0.324,0.631 1|1:2:0,0,1 1|1:1.848:0.008,0.137,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.01,0.365,0.624 1|1:1.641:0.015,0.328,0.656 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.812:0.009,0.17,0.821 1|0:1:0,1,0 1|1:1.813:0.009,0.17,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.009,0.17,0.821 1|1:1.859:0.002,0.136,0.861 1|1:1.931:0.002,0.066,0.932 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.001,0.162,0.837 1|1:2:0,0,1 1|1:1.812:0.009,0.17,0.821 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.014,0.215,0.771 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.804:0.006,0.184,0.81 1|1:1.821:0.009,0.162,0.83 1|1:1.793:0.01,0.186,0.804 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0.001,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16432162 SNP-3.16430806. C A . PASS AR2=1;DR2=1;AF=0.49 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16433028 SNP-3.16431672. C A . PASS AR2=1;DR2=1;AF=0.434 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16437602 SNP-3.16436246. A G . PASS AR2=1;DR2=1;AF=0.216 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16439107 SNP-3.16437751. C A . PASS AR2=0.979;DR2=0.982;AF=0.478 GT:DS:GP 1|1:2:0,0,1 1|1:1.922:0.001,0.077,0.923 1|1:1.802:0.009,0.181,0.811 1|1:2:0,0,1 1|1:1.899:0.003,0.094,0.903 1|1:2:0,0,1 1|1:1.876:0.005,0.114,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.879,0.117,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|0:1:0,1,0 0|0:0.303:0.718,0.261,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.836,0.155,0.009 1|1:2:0,0,1 0|0:0.075:0.927,0.07,0.003 0|0:0.072:0.931,0.066,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.944,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:1.851:0.003,0.143,0.854 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.171:0.835,0.16,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.169:0.841,0.148,0.01 0|1:1:0,1,0 0|0:0.195:0.815,0.176,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.923,0.073,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.093:0.911,0.085,0.004 0|0:0.151:0.856,0.138,0.007 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.008,0.284,0.708 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.927,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 0|0:0.378:0.643,0.337,0.02 0|0:0.138:0.867,0.129,0.004 0|0:0:1,0,0 0|0:0.163:0.844,0.15,0.006 0|0:0.167:0.842,0.148,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.775:0.015,0.194,0.791 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.338:0.69,0.282,0.028 0|0:0:1,0,0 0|0:0.1:0.902,0.097,0.002 1|1:1.901:0.003,0.093,0.904 0|0:0:1,0,0 +3 16440472 SNP-3.16439116. C A . PASS AR2=1;DR2=1;AF=0.463 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16442247 SNP-3.16440891. A G . PASS AR2=0.967;DR2=0.976;AF=0.413 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.516:0.069,0.347,0.584 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.016,0.202,0.783 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.626:0.017,0.341,0.642 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.788:0.009,0.194,0.797 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.818:0.009,0.163,0.827 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.204:0.156,0.484,0.36 1|1:1.482:0.058,0.402,0.54 1|1:1.494:0.054,0.398,0.548 0|1:1:0,1,0 1|1:1.772:0.012,0.204,0.784 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.737:0.015,0.232,0.752 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.573:0.045,0.337,0.618 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.013,0.133,0.854 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.543:0.041,0.375,0.584 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.007:0.234,0.526,0.241 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.542:0.052,0.353,0.595 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.542:0.053,0.353,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16442748 SNP-3.16441392. A G . PASS AR2=0.988;DR2=0.992;AF=0.2 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.057:0.943,0.057,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.813,0.184,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.862,0.134,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.43:0.576,0.418,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.583:0.503,0.412,0.085 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16444005 SNP-3.16442649. C A . PASS AR2=0.942;DR2=0.954;AF=0.416 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.073:0.929,0.068,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.133:0.19,0.488,0.322 0|1:0.412:0.597,0.393,0.009 0|0:0:1,0,0 0|0:0.303:0.719,0.259,0.022 0|0:0.135:0.87,0.124,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.755,0.22,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:1.522:0.043,0.392,0.565 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.955,0.044,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.869,0.128,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0.116:0.887,0.11,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.202:0.818,0.162,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.846,0.148,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.748,0.241,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0.287:0.739,0.236,0.026 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.153:0.859,0.128,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.378:0.654,0.314,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0.05:0.951,0.049,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.902:0.005,0.087,0.907 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.015,0.219,0.766 1|0:1.201:0.147,0.506,0.348 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.416:0.105,0.374,0.521 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.739:0.004,0.254,0.742 1|0:0.363:0.646,0.344,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.004,0.077,0.919 1|1:2:0,0,1 1|1:1.938:0,0.061,0.938 1|1:2:0,0,1 1|1:1.688:0.026,0.26,0.714 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.745,0.231,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.78:0.37,0.481,0.15 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.019,0.223,0.758 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.746,0.247,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.911:0.299,0.492,0.21 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.489:0.657,0.197,0.146 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.722,0.263,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.26:0.763,0.213,0.024 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.165:0.842,0.152,0.007 0|0:0.104:0.899,0.099,0.002 1|1:2:0,0,1 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.67,0.321,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.798:0.013,0.177,0.81 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.135:0.186,0.493,0.321 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.571:0.069,0.291,0.64 1|1:2:0,0,1 1|1:1.877:0.003,0.118,0.88 1|1:1.465:0.117,0.302,0.582 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.291:0.734,0.241,0.025 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0.003:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16444551 SNP-3.16443195. A G . PASS AR2=0.999;DR2=0.999;AF=0.208 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.002,0.191,0.807 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16444877 SNP-3.16443521. C A . PASS AR2=0.986;DR2=0.988;AF=0.303 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.083:0.921,0.076,0.003 0|0:0.22:0.783,0.214,0.003 0|0:0:1,0,0 0|0:0.093:0.911,0.085,0.004 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.909,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.001,0.998 1|1:2:0,0,1 0|0:0.106:0.901,0.093,0.006 0|0:0.073:0.93,0.068,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.076,0.002 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:1.051:0.218,0.512,0.269 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.864:0.326,0.484,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.617:0.501,0.381,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.923,0.073,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16445595 SNP-3.16444239. C A . PASS AR2=0.993;DR2=0.994;AF=0.482 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:1.939:0.001,0.058,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.262:0.744,0.25,0.006 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.861,0.136,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.134:0.058,0.749,0.193 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.915,0.083,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.292:0.71,0.288,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.91,0.089,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.117:0.887,0.109,0.004 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.203:0.798,0.202,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.033:0.968,0.031,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.914,0.084,0.003 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16445816 SNP-3.16444460. A G . PASS AR2=0.915;DR2=0.935;AF=0.369 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.251:0.163,0.423,0.414 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.133:0.169,0.529,0.302 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.548:0.056,0.34,0.604 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.522:0.059,0.36,0.581 1|1:1.318:0.118,0.445,0.436 1|1:1.526:0.042,0.39,0.568 0|0:1.121:0.165,0.549,0.286 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.434:0.072,0.423,0.505 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.64:0.024,0.311,0.665 1|1:1.657:0.031,0.282,0.687 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.727:0.019,0.234,0.746 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.283:0.13,0.456,0.413 1|1:2:0,0,1 1|1:1.283:0.127,0.462,0.411 1|1:2:0,0,1 1|0:1.127:0.192,0.489,0.319 1|1:1.728:0.019,0.234,0.747 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.698:0.023,0.255,0.721 0|0:0:1,0,0 1|1:1.748:0.016,0.22,0.764 1|1:1.714:0.021,0.245,0.734 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.019,0.233,0.748 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.019,0.231,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.586:0.065,0.284,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.652:0.02,0.309,0.672 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.299:0.084,0.532,0.383 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.019,0.231,0.75 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.284:0.127,0.462,0.411 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.279:0.128,0.465,0.407 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.292:0.083,0.543,0.375 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.7:0.044,0.211,0.744 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.485:0.07,0.375,0.555 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.423:0.08,0.418,0.503 0|0:0:1,0,0 1|0:1.089:0.178,0.555,0.267 0|1:1.433:0.081,0.406,0.513 1|1:1.731:0.019,0.231,0.75 1|1:1.451:0.104,0.341,0.555 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.44:0.048,0.464,0.488 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.018,0.227,0.755 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.896,0.101,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.725:0.019,0.236,0.745 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.021,0.185,0.794 1|1:2:0,0,1 1|1:1.347:0.103,0.446,0.45 0|0:0:1,0,0 1|1:2:0,0,1 +3 16447361 SNP-3.16446005. A G . PASS AR2=1;DR2=1;AF=0.216 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16450518 SNP-3.16449162. A G . PASS AR2=0.985;DR2=0.987;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.842,0.151,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.939,0.058,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.172:0.835,0.157,0.008 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.029,0.97 1|1:1.743:0.008,0.241,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 0|1:1.025:0.039,0.897,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.789:0.241,0.728,0.031 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.891,0.106,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0.001,0.031,0.968 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.053:0.947,0.053,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.649:0.014,0.323,0.663 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0.001,0.029,0.97 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.074,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0.002,0.074,0.924 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.005,0.122,0.873 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16452818 SNP-3.16451462. A G . PASS AR2=0.943;DR2=0.96;AF=0.24 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.008,0.161,0.83 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.876:0.004,0.116,0.88 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.888:0.003,0.107,0.891 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.42:0.09,0.4,0.51 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.443:0.606,0.345,0.049 0|0:0.297:0.726,0.251,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.448:0.602,0.347,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0,0.159,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.443:0.606,0.344,0.049 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.438:0.61,0.342,0.048 0|0:0:1,0,0 0|0:0.444:0.606,0.345,0.049 0|0:0:1,0,0 0|0:0.432:0.615,0.338,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.861:0.005,0.129,0.866 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.495:0.066,0.373,0.561 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.749:0.018,0.216,0.766 1|1:1.87:0.005,0.121,0.874 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.443:0.606,0.345,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.435:0.612,0.34,0.048 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.449:0.601,0.348,0.051 0|1:0.898:0.247,0.607,0.145 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.422:0.623,0.332,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.407:0.635,0.323,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.322:0.705,0.269,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16454535 SNP-3.16453179. A G . PASS AR2=0.954;DR2=0.962;AF=0.228 GT:DS:GP 0|0:0.134:0.869,0.128,0.003 0|0:0.11:0.89,0.109,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.768:0.382,0.468,0.15 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.904:0.002,0.092,0.906 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.426:0.606,0.361,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.001,0.086,0.913 1|1:2:0,0,1 1|1:1.962:0.001,0.037,0.963 1|0:1.125:0.139,0.596,0.265 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.801:0.35,0.499,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.565:0.53,0.376,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.8,0.194,0.006 0|0:0:1,0,0 0|0:0.159:0.842,0.158,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.91,0.083,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.27:0.134,0.463,0.403 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.091:0.209,0.49,0.3 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.741:0.019,0.222,0.76 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.883:0.004,0.11,0.887 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.177:0.832,0.16,0.009 0|1:1.203:0.017,0.763,0.22 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.854:0.328,0.491,0.182 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.406:0.657,0.281,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.554:0.568,0.31,0.122 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.955,0.043,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.016,0.202,0.782 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16461364 SNP-3.16460008. A G . PASS AR2=0.974;DR2=0.982;AF=0.394 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.693:0.028,0.252,0.72 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.564:0.057,0.322,0.621 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.45:0.077,0.397,0.526 1|1:1.693:0.02,0.267,0.713 1|0:1:0,1,0 1|1:1.553:0.046,0.354,0.6 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.496:0.065,0.375,0.56 1|1:1.393:0.091,0.425,0.484 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.651:0.049,0.25,0.7 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.572:0.044,0.34,0.616 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.641:0.031,0.296,0.672 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.001,0.077,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.809:0.017,0.157,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16462377 SNP-3.16461021. A G . PASS AR2=0.945;DR2=0.956;AF=0.239 GT:DS:GP 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.002,0.213,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.001:0.25,0.498,0.252 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.857,0.137,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 1|1:0.987:0.257,0.498,0.244 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|1:0.938:0.226,0.611,0.164 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.759,0.222,0.02 0|1:0.612:0.432,0.524,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.962:0.27,0.498,0.232 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.672:0.442,0.445,0.113 0|0:0:1,0,0 0|0:0.222:0.782,0.214,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.94,0.055,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.4:0.636,0.328,0.036 0|0:0:1,0,0 0|0:0.798:0.363,0.477,0.161 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0.227:0.787,0.199,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.727,0.249,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.908,0.091,0.001 1|1:1.99:0,0.01,0.99 1|0:1.521:0,0.478,0.522 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.825:0.346,0.482,0.171 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.589:0,0.411,0.589 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.897,0.103,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.106,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.677:0.438,0.447,0.115 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.592:0.488,0.431,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.336:0.7,0.264,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.388:0.094,0.424,0.482 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16463564 SNP-3.16462208. A G . PASS AR2=1;DR2=1;AF=0.451 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16464250 SNP-3.16462894. C A . PASS AR2=0.982;DR2=0.986;AF=0.353 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.245:0.766,0.223,0.011 0|0:0:1,0,0 0|0:0.158:0.848,0.145,0.006 0|0:0.139:0.866,0.129,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.119:0.198,0.486,0.317 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.86,0.136,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.955,0.045,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.064:0.937,0.062,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.706:0.02,0.253,0.727 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.714:0.022,0.243,0.736 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.499:0.049,0.403,0.548 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.534:0.049,0.368,0.583 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.002:0.258,0.483,0.26 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16464819 SNP-3.16463463. C A . PASS AR2=0.977;DR2=0.985;AF=0.345 GT:DS:GP 0|1:1:0,1,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.983:0,0.017,0.983 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.555:0.494,0.457,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.599:0.491,0.418,0.09 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.541:0.081,0.297,0.622 0|0:0:1,0,0 0|0:0.563:0.516,0.406,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.754,0.229,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.759,0.224,0.017 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.665:0.367,0.6,0.032 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.789,0.208,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.18:0.842,0.136,0.022 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.157:0.849,0.145,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.442:0.607,0.344,0.049 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16465142 SNP-3.16463786. A G . PASS AR2=1;DR2=1;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16465232 SNP-3.16463876. A G . PASS AR2=0.917;DR2=0.943;AF=0.26 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0.023,0.253,0.724 1|1:1.74:0.016,0.227,0.756 0|1:1:0,1,0 1|1:1.773:0.013,0.201,0.786 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.743:0.015,0.227,0.758 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.078:0.924,0.075,0.002 0|1:1.574:0.051,0.325,0.625 1|1:2:0,0,1 1|1:1.816:0.006,0.171,0.823 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.649:0.031,0.288,0.68 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.007,0.151,0.842 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.496:0.566,0.372,0.062 1|0:1:0,1,0 0|0:0.506:0.558,0.378,0.064 0|0:0.505:0.559,0.377,0.064 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.504:0.56,0.377,0.063 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.504:0.56,0.377,0.063 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.499:0.564,0.373,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.495:0.566,0.372,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.504:0.56,0.377,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.504:0.56,0.377,0.063 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.01,0.175,0.815 1|1:1.691:0.029,0.251,0.72 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.48:0.578,0.363,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.507:0.557,0.378,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.773:0.012,0.203,0.785 1|1:1.862:0.005,0.127,0.867 0|0:0.504:0.56,0.377,0.063 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.504:0.56,0.377,0.063 0|0:0.506:0.558,0.378,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.005,0.116,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.943,0.056,0.001 1|1:2:0,0,1 1|0:0.51:0.555,0.38,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.504:0.56,0.377,0.063 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16465920 SNP-3.16464564. C A . PASS AR2=0.929;DR2=0.948;AF=0.487 GT:DS:GP 1|0:1.1:0.178,0.545,0.278 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.023:0.234,0.509,0.257 0|1:0.933:0.281,0.505,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.555:0.504,0.437,0.059 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.032,0.263,0.705 1|1:1.537:0.063,0.336,0.601 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.631:0.481,0.407,0.112 1|1:1.657:0.029,0.284,0.686 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.698:0.023,0.257,0.721 0|0:0.614:0.48,0.425,0.095 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.621:0.476,0.427,0.097 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.865:0.325,0.484,0.19 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.482:0.579,0.36,0.061 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.909,0.087,0.004 0|0:0:1,0,0 0|1:1.049:0.044,0.864,0.093 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.806:0.345,0.504,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.604:0.097,0.201,0.702 0|0:0.404:0.643,0.31,0.047 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.066:0.185,0.564,0.251 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.753:0.392,0.462,0.146 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.332:0.697,0.273,0.029 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.684:0.434,0.448,0.118 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.662:0.027,0.285,0.688 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.719:0.02,0.242,0.739 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.855:0.262,0.621,0.117 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.89,0.11,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.61:0.488,0.413,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.54:0.532,0.396,0.072 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.01,0.168,0.822 1|0:0.856:0.333,0.478,0.189 1|1:2:0,0,1 1|1:1.429:0.109,0.353,0.538 1|1:2:0,0,1 0|1:1.247:0.121,0.511,0.368 0|0:0.168:0.84,0.153,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.903,0.093,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.251:0.18,0.388,0.431 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.868:0.01,0.111,0.878 1|1:1.854:0.012,0.122,0.866 1|1:2:0,0,1 1|1:2:0,0,1 +3 16469586 SNP-3.16468230ac. A G . PASS AR2=0.876;DR2=0.898;AF=0.321 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.456:0.071,0.402,0.527 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.624:0.032,0.313,0.655 1|1:2:0,0,1 1|1:1.722:0.023,0.232,0.745 1|1:1.659:0.038,0.265,0.697 1|1:1.626:0.032,0.311,0.658 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.777:0.013,0.198,0.789 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.286:0.132,0.451,0.418 1|1:2:0,0,1 1|1:1.776:0.013,0.199,0.788 1|1:2:0,0,1 1|1:1.799:0.01,0.181,0.809 1|1:1.776:0.013,0.199,0.789 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.698:0.024,0.254,0.722 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.306:0.122,0.449,0.428 0|1:1.157:0.195,0.452,0.353 1|0:1.029:0.244,0.483,0.273 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.491:0.063,0.384,0.553 0|1:1.051:0.229,0.492,0.28 1|0:1.27:0.131,0.468,0.401 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.005,0.217,0.778 1|1:1.431:0.072,0.425,0.503 1|1:1.647:0.035,0.284,0.681 1|0:1.059:0.233,0.474,0.292 0|0:0:1,0,0 0|1:1.15:0.266,0.317,0.417 1|1:1.716:0.02,0.243,0.737 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.564:0.051,0.333,0.615 1|0:1.164:0.175,0.486,0.339 1|1:1.056:0.235,0.473,0.291 0|0:0:1,0,0 1|1:1.333:0.114,0.44,0.447 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.124:0.185,0.506,0.309 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.172:0.191,0.445,0.363 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.997:0.259,0.485,0.256 0|0:0:1,0,0 0|1:1.117:0.18,0.524,0.297 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.577:0.425,0.572,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.188:0.162,0.488,0.35 0|0:0:1,0,0 0|1:0.96:0.279,0.482,0.239 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.775:0.013,0.199,0.788 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.322:0.118,0.442,0.44 1|1:1.774:0.013,0.2,0.787 1|1:1.756:0.015,0.215,0.771 1|1:1.773:0.013,0.201,0.786 0|1:0.962:0.273,0.492,0.235 0|0:1.043:0.24,0.478,0.283 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.774:0.013,0.2,0.787 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.112:0.112,0.664,0.224 1|1:1.467:0.06,0.412,0.527 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.953:0.275,0.498,0.228 1|0:1.317:0.126,0.432,0.443 1|1:1.774:0.013,0.2,0.787 1|1:1.266:0.14,0.454,0.406 1|1:1.574:0.039,0.348,0.613 1|1:1.777:0.013,0.198,0.79 1|1:1.899:0.003,0.095,0.902 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.268:0.134,0.464,0.402 1|1:1.894:0.003,0.1,0.897 0|1:0.964:0.243,0.55,0.207 1|1:1.781:0.013,0.194,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.575:0.046,0.333,0.621 1|1:2:0,0,1 1|1:1.455:0.078,0.389,0.533 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16470346 SNP-3.16468990. A G . PASS AR2=0.986;DR2=0.988;AF=0.274 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.072:0.928,0.072,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:1.784:0.012,0.192,0.796 0|0:0:1,0,0 1|1:1.798:0.011,0.181,0.809 1|1:1.781:0.012,0.195,0.793 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.723:0.021,0.236,0.743 0|0:0:1,0,0 1|1:1.796:0.011,0.182,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.011,0.189,0.8 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.013,0.204,0.784 1|0:0.993:0.009,0.988,0.003 1|1:1.792:0.011,0.186,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.798:0.011,0.181,0.809 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.731:0.02,0.228,0.751 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.798:0.011,0.181,0.809 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16473434 SNP-3.16472078. A G . PASS AR2=0.996;DR2=0.996;AF=0.434 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.002,0.14,0.857 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.97:0.001,0.029,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.023,0.183,0.794 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.932:0.002,0.065,0.933 1|1:2:0,0,1 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.045,0.953 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.956 1|1:1.96:0.001,0.039,0.961 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0.001,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16476167 SNP-3.16474811. C A . PASS AR2=0.983;DR2=0.986;AF=0.238 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.017,0.225,0.758 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.74:0.017,0.225,0.757 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.18,0.809 1|1:2:0,0,1 1|1:1.79:0.013,0.185,0.802 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.016,0.22,0.764 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.005,0.13,0.865 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.804:0.012,0.171,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.026,0.276,0.698 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.01,0.179,0.812 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.758:0.015,0.211,0.774 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.731:0.019,0.231,0.75 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.01,0.179,0.81 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16476452 SNP-3.16475096. C A . PASS AR2=0.992;DR2=0.993;AF=0.302 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.133:0.871,0.124,0.004 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.163:0.844,0.149,0.007 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.884,0.112,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.178:0.83,0.162,0.008 0|0:0.194:0.816,0.174,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0.118:0.886,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 16477921 SNP-3.16476565. C A . PASS AR2=0.952;DR2=0.971;AF=0.511 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.455:0.075,0.396,0.53 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.453:0.075,0.396,0.529 1|1:1.505:0.06,0.375,0.565 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.453:0.075,0.397,0.528 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.449:0.077,0.398,0.525 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.444:0.078,0.4,0.522 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.455:0.075,0.395,0.53 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.454:0.075,0.396,0.529 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.433:0.081,0.404,0.515 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.492:0.061,0.386,0.553 1|1:1.433:0.081,0.404,0.515 0|0:0:1,0,0 1|1:1.454:0.075,0.396,0.529 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.427:0.082,0.409,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.439:0.079,0.402,0.519 0|1:1.454:0.075,0.396,0.529 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.455:0.075,0.395,0.53 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.438:0.08,0.402,0.518 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16478110 SNP-3.16476754. A G . PASS AR2=0.998;DR2=0.998;AF=0.46 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.894,0.103,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.105:0.898,0.099,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16478160 SNP-3.16476804. A G . PASS AR2=0.976;DR2=0.98;AF=0.219 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.094:0.91,0.086,0.004 0|0:0.261:0.752,0.236,0.013 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.095,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.789,0.2,0.011 0|0:0.183:0.827,0.164,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.125:0.88,0.116,0.005 0|0:0.212:0.8,0.189,0.012 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.314:0.706,0.273,0.02 0|0:0.2:0.814,0.172,0.014 0|1:1:0,1,0 0|0:0.169:0.839,0.154,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.156:0.851,0.142,0.007 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.999:0.001,0.999,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.869,0.124,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.741,0.24,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.136:0.868,0.128,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.159,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.788,0.201,0.012 0|0:0:1,0,0 +3 16478593 SNP-3.16477237. C A . PASS AR2=0.992;DR2=0.993;AF=0.248 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.004,0.107,0.888 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.819:0.007,0.168,0.825 1|1:1.887:0.004,0.104,0.891 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.006,0.165,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.817:0.01,0.163,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.819:0.01,0.162,0.828 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0.001,0.081,0.917 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.01,0.152,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.005,0.068,0.927 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16481773 SNP-3.16480417. A G . PASS AR2=0.927;DR2=0.943;AF=0.252 GT:DS:GP 0|0:0.131:0.875,0.119,0.006 0|0:0.406:0.602,0.389,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.562:0.537,0.364,0.099 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.88,0.12,0.001 0|0:0:1,0,0 1|1:1.44:0.07,0.419,0.511 0|0:0.086:0.917,0.081,0.002 1|1:1.568:0.051,0.329,0.62 0|0:0:1,0,0 0|1:0.888:0.252,0.609,0.139 0|0:0:1,0,0 0|0:0.133:0.872,0.123,0.005 1|1:2:0,0,1 1|0:1.492:0.066,0.377,0.558 1|1:1.613:0.034,0.319,0.647 1|1:1.63:0.034,0.302,0.664 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.016,0.216,0.767 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.117:0.892,0.1,0.008 1|1:2:0,0,1 0|0:0.162:0.844,0.15,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.354:0.094,0.458,0.448 1|1:2:0,0,1 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 1|1:1.549:0.053,0.346,0.602 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.636:0.036,0.292,0.672 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.839,0.152,0.009 1|1:1.954:0.001,0.045,0.954 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.875,0.122,0.003 0|0:0.089:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0.085:0.919,0.078,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.41:0.614,0.362,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.803,0.173,0.024 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.801,0.186,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 0|1:0.888:0.324,0.465,0.211 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.418:0.115,0.353,0.533 1|0:1.152:0.161,0.526,0.313 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.176:0.83,0.164,0.006 0|0:0.153:0.854,0.138,0.008 0|1:1.03:0.222,0.526,0.252 1|1:1.609:0.04,0.312,0.648 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.715:0.01,0.265,0.725 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.64:0.034,0.293,0.674 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.039:0.232,0.496,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16483495 SNP-3.16482139. C A . PASS AR2=0.933;DR2=0.934;AF=0.46 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.919:0.293,0.496,0.212 1|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.919:0.293,0.496,0.211 0|0:0:1,0,0 1|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.919:0.293,0.496,0.211 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.919:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.919:0.293,0.496,0.211 1|0:0.919:0.293,0.496,0.211 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.919:0.293,0.496,0.211 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16494653 SNP-3.16493297. A G . PASS AR2=0.979;DR2=0.983;AF=0.434 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.947:0.002,0.048,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.002,0.092,0.907 1|0:1:0,1,0 1|1:1.968:0.001,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.255:0.762,0.222,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.76,0.224,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.898:0.314,0.474,0.212 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.255:0.762,0.222,0.016 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.587:0.025,0.363,0.612 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0.255:0.762,0.222,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.964 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.847:0.005,0.144,0.852 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.831:0.007,0.154,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.009,0.138,0.853 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.011,0.173,0.815 0|0:0:1,0,0 1|1:2:0,0,1 +3 16496539 SNP-3.16495183. A G . PASS AR2=0.95;DR2=0.957;AF=0.361 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.489:0.056,0.398,0.546 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:1.047:0.224,0.505,0.271 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.355:0.067,0.51,0.423 1|0:1:0,1,0 0|1:1.162:0.177,0.484,0.339 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.046:0.228,0.499,0.273 1|1:1.739:0.017,0.227,0.756 1|1:1.771:0.018,0.193,0.789 1|1:2:0,0,1 0|1:1.028:0.236,0.5,0.264 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.008,0.159,0.833 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.787:0.012,0.189,0.799 1|1:1.709:0.018,0.255,0.727 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.002,0.045,0.953 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.934:0.066,0.933,0 0|0:0:1,0,0 1|1:1.803:0.01,0.177,0.813 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.009,0.168,0.823 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.022:0.24,0.498,0.262 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.978:0.269,0.484,0.247 1|1:1.716:0.02,0.243,0.736 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.607:0.039,0.315,0.646 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.75:0.016,0.219,0.765 0|1:1.044:0.225,0.506,0.269 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.327:0.106,0.461,0.433 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.808:0.01,0.172,0.818 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.313:0.102,0.482,0.416 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.1:0.206,0.488,0.306 0|1:1:0,1,0 1|1:1.861:0.007,0.125,0.868 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.006,0.132,0.862 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.022,0.236,0.742 0|0:0:1,0,0 1|1:2:0,0,1 +3 16500736 SNP-3.16499380. C A . PASS AR2=0.983;DR2=0.986;AF=0.243 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.002,0.066,0.933 1|1:1.841:0.007,0.146,0.847 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.022,0.347,0.631 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.005,0.135,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.613:0.034,0.32,0.646 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.008,0.171,0.821 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.837:0.006,0.15,0.843 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.004,0.091,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.739:0.016,0.228,0.756 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.01,0.183,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.002,0.1,0.898 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.718:0.02,0.242,0.738 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.731:0.018,0.233,0.749 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.005,0.117,0.878 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.008,0.139,0.853 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16501781 SNP-3.16500425. A G . PASS AR2=0.924;DR2=0.942;AF=0.229 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.025,0.265,0.71 0|0:0.215:0.792,0.202,0.006 0|0:0:1,0,0 1|1:0.859:0.449,0.244,0.308 0|0:0:1,0,0 0|0:0.419:0.607,0.367,0.026 0|0:0:1,0,0 1|0:0.799:0.361,0.48,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.087,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0.21:0.795,0.199,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.001 1|1:2:0,0,1 0|0:0.065:0.936,0.064,0 0|0:0.142:0.867,0.125,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.364:0.666,0.304,0.03 1|1:2:0,0,1 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.289:0.735,0.241,0.024 1|1:2:0,0,1 0|0:0.272:0.751,0.227,0.022 0|0:0.302:0.724,0.251,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.108:0.895,0.102,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 1|0:0.473:0.537,0.453,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.786,0.196,0.018 1|1:2:0,0,1 0|0:0.067:0.934,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.122:0.886,0.105,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.755,0.227,0.018 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 0|0:0.028:0.973,0.027,0 1|1:1.684:0.025,0.265,0.71 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.4:0.617,0.367,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.025,0.265,0.71 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.852,0.132,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.903,0.092,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.619:0.45,0.481,0.069 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0.302:0.699,0.3,0.001 0|0:0.085:0.918,0.08,0.003 1|1:1.684:0.025,0.265,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0.038:0.963,0.037,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.917,0.078,0.004 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0.162:0.844,0.15,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.038,0.001 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.081,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 1|1:1.684:0.025,0.265,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.025,0.265,0.71 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16506045 SNP-3.16504689. A G . PASS AR2=0.913;DR2=0.917;AF=0.424 GT:DS:GP 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.894,0.105,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.111:0.889,0.111,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.178:0.837,0.148,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 0|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.855:0.328,0.489,0.183 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.847:0.332,0.488,0.18 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.748,0.251,0 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 0|0:0.058:0.945,0.052,0.003 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 0|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 1|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.332,0.488,0.18 0|0:0.847:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.847:0.332,0.488,0.18 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16506581 SNP-3.16505225. C A . PASS AR2=0.964;DR2=0.97;AF=0.453 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0,0.115,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.047:0.005,0.943,0.052 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.365:0.062,0.511,0.427 1|1:1.919:0,0.081,0.919 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.288:0.053,0.606,0.341 0|1:1:0,1,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.003,0.172,0.825 1|1:1.798:0.022,0.159,0.82 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|0:1:0,1,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.552:0.045,0.357,0.598 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.026,0.163,0.811 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 1|1:1.839:0.007,0.147,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.371:0.042,0.546,0.412 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 1|1:1.559:0.073,0.295,0.632 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:1.925:0.002,0.072,0.927 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16506692 SNP-3.16505336. A G . PASS AR2=0.988;DR2=0.991;AF=0.325 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 0|0:0:1,0,0 1|1:1.948:0.001,0.051,0.948 1|1:1.954:0.001,0.045,0.954 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0.005:0.995,0.005,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.001,0.127,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.01,0.175,0.815 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.883:0.002,0.112,0.885 1|1:2:0,0,1 1|1:1.448:0.069,0.414,0.517 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.934:0,0.065,0.935 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.96:0,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.621:0.093,0.193,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.003,0.084,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.936,0.058,0.006 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0.004,0.073,0.923 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.002,0.052,0.945 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16509058 SNP-3.16507702. A G . PASS AR2=0.93;DR2=0.93;AF=0.443 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 0|0:0.023:0.977,0.023,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.026:0.238,0.499,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|1:1.025:0.238,0.499,0.263 1|1:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.025:0.238,0.499,0.263 1|1:2:0,0,1 0|1:1.025:0.238,0.499,0.263 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|1:1.025:0.238,0.499,0.263 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.025:0.238,0.499,0.263 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.017:0.241,0.5,0.259 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.026:0.237,0.499,0.263 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.025:0.238,0.499,0.263 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.025:0.238,0.499,0.263 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.025:0.238,0.499,0.263 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.025:0.238,0.499,0.263 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|1:1.025:0.238,0.499,0.263 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.025:0.238,0.499,0.263 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.025:0.238,0.499,0.263 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.025:0.238,0.499,0.263 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16509658 SNP-3.16508302. A G . PASS AR2=0.949;DR2=0.962;AF=0.361 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.004,0.123,0.873 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.9:0.1,0.899,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.01,0.188,0.803 1|1:1.778:0.007,0.209,0.784 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.37:0.664,0.301,0.034 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.368:0.666,0.3,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.892:0.004,0.101,0.896 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.372:0.663,0.302,0.035 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 1|1:1.854:0.004,0.139,0.857 1|1:1.915:0.002,0.081,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0,0.083,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.371:0.664,0.302,0.035 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|0:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 0|1:0.37:0.664,0.301,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.664,0.301,0.034 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16510248 SNP-3.16508892. A G . PASS AR2=0.99;DR2=0.991;AF=0.209 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0.115:0.889,0.107,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.175:0.834,0.157,0.009 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0.114:0.889,0.107,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.87,0.124,0.006 0|0:0.041:0.96,0.04,0.001 0|1:1.107:0,0.893,0.107 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.905,0.093,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.936,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.999:0.001,0.999,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.002,0.054,0.944 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.068:0.933,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 +3 16510365 SNP-3.16509009. A G . PASS AR2=0.867;DR2=0.896;AF=0.304 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.912:0.287,0.513,0.2 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.819:0.324,0.534,0.142 0|1:0.751:0.388,0.473,0.139 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.77:0.383,0.463,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.487:0.555,0.404,0.042 0|0:0:1,0,0 0|1:0.865:0.316,0.503,0.181 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.405:0.635,0.326,0.039 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.899:0.304,0.493,0.203 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.042:0.222,0.515,0.264 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.583:0.494,0.428,0.078 1|0:0.774:0.38,0.467,0.153 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.528:0.548,0.376,0.076 0|0:0:1,0,0 1|1:1.393:0.114,0.378,0.508 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.57:0.512,0.406,0.082 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.109:0.134,0.622,0.244 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.455:0.557,0.43,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.616:0.486,0.413,0.101 0|0:0.187:0.823,0.167,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.022:0.154,0.671,0.175 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.121:0.248,0.383,0.369 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.638:0.061,0.241,0.698 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.582:0.069,0.281,0.65 0|0:0:1,0,0 0|0:0.133:0.871,0.125,0.004 0|0:0:1,0,0 0|0:0.163:0.843,0.151,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.629:0.466,0.439,0.095 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.961:0.119,0.8,0.081 1|0:1.263:0.145,0.447,0.408 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.638:0.061,0.241,0.698 0|0:0:1,0,0 0|0:0.978:0.267,0.489,0.244 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.41:0.653,0.284,0.063 0|0:0:1,0,0 0|0:0.732:0.396,0.477,0.127 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.792:0.376,0.455,0.168 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.596:0.485,0.433,0.082 0|0:0.432:0.613,0.342,0.045 1|1:1.08:0.206,0.508,0.286 0|0:0:1,0,0 1|0:0.985:0.271,0.473,0.256 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.605:0.49,0.414,0.095 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.984:0.251,0.513,0.236 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.09:0.215,0.481,0.304 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.707:0.049,0.196,0.755 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.77,0.228,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.946,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.683:0.437,0.443,0.12 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.707:0.429,0.435,0.136 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.513:0.56,0.367,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.7:0.426,0.447,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.755:0.385,0.476,0.14 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.68:0.439,0.442,0.119 0|0:0:1,0,0 0|0:0.067:0.935,0.064,0.002 0|1:1.135:0.231,0.402,0.367 0|0:0.654:0.444,0.458,0.098 0|0:0.627:0.467,0.439,0.094 +3 16510486 SNP-3.16509130. C A . PASS AR2=0.995;DR2=0.996;AF=0.252 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0,0.194,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.094:0,0.906,0.094 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.017:0.01,0.963,0.027 0|0:0.227:0.783,0.208,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:1.99:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.257:0,0.743,0.257 0|0:0:1,0,0 +3 16512835 SNP-3.16511479. C A . PASS AR2=0.955;DR2=0.968;AF=0.284 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.925,0.073,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.402:0.64,0.319,0.041 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.439:0.609,0.342,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.042:0.958,0.042,0 0|0:0.059:0.942,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.059,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.431:0.616,0.337,0.047 1|0:0.492:0.569,0.369,0.061 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.431:0.616,0.338,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.702,0.298,0 0|0:0.495:0.565,0.374,0.06 0|0:0.121:0.881,0.118,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 1|1:1.837:0.006,0.15,0.844 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.435:0.612,0.34,0.048 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.008,0.168,0.824 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.431:0.616,0.337,0.047 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.72,0.25,0.03 0|0:0.581:0.507,0.404,0.089 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.914,0.084,0.002 0|0:0.093:0.91,0.087,0.003 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.033,0.967 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.181:0.837,0.145,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.442:0.61,0.339,0.051 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.431:0.616,0.337,0.047 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.431:0.616,0.337,0.047 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.176:0.069,0.686,0.245 0|0:0:1,0,0 +3 16515197 SNP-3.16513841. C A . PASS AR2=0.99;DR2=0.991;AF=0.271 GT:DS:GP 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0.266:0.751,0.232,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.193:0.817,0.174,0.009 1|1:1.987:0,0.013,0.987 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.214:0.796,0.194,0.01 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.204:0.805,0.185,0.009 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.826:0.007,0.161,0.832 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.268:0.75,0.232,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.784,0.202,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16516237 SNP-3.16514881. C A . PASS AR2=0.968;DR2=0.974;AF=0.491 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.986 1|1:2:0,0,1 0|0:0.531:0.543,0.383,0.074 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.285:0.73,0.256,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.077:0.924,0.074,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.886,0.112,0.003 1|1:2:0,0,1 0|0:0.226:0.787,0.2,0.013 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.146:0,0.854,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.91,0.09,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.84:0.006,0.148,0.846 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.249:0.791,0.169,0.04 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.276:0.744,0.236,0.02 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.82:0.008,0.165,0.828 0|0:0.284:0.737,0.241,0.022 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.231:0.783,0.203,0.014 1|1:2:0,0,1 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.151:0.184,0.482,0.335 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.967 1|0:0.748:0.394,0.465,0.141 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.226:0.001,0.773,0.227 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.554:0.52,0.406,0.074 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.99:0,0.01,0.99 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.182:0.827,0.163,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.799,0.189,0.012 1|1:2:0,0,1 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.231:0.783,0.203,0.014 0|0:0.231:0.783,0.203,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.053:0.084,0.779,0.137 1|1:2:0,0,1 +3 16518919 SNP-3.16517563. A G . PASS AR2=0.92;DR2=0.941;AF=0.275 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.717,0.268,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:0.92:0.327,0.426,0.247 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.189:0.82,0.17,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.057,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.183:0.817,0.183,0 1|1:1.225:0.223,0.33,0.448 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.004,0.062,0.934 0|0:0.86:0.314,0.511,0.175 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.82:0.342,0.495,0.163 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.322:0.715,0.249,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.525:0.537,0.401,0.062 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.992:0.31,0.389,0.301 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.399:0.649,0.303,0.048 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.444:0.608,0.341,0.051 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.372:0.67,0.289,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.763,0.22,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.03:0.251,0.468,0.281 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.325:0.714,0.248,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.814,0.176,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.73,0.25,0.02 0|0:0:1,0,0 0|0:0.557:0.49,0.463,0.047 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.388:0.647,0.318,0.035 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0.565:0.544,0.346,0.109 0|0:0.629:0.558,0.256,0.186 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.496:0.565,0.374,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.737,0.238,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.353:0.171,0.306,0.524 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 0|1:0.906:0.323,0.448,0.229 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.496:0.555,0.393,0.051 0|0:0.326:0.713,0.248,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.876:0.33,0.464,0.206 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16521187 SNP-3.16519831. C A . PASS AR2=0.991;DR2=0.993;AF=0.234 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.737:0,0.262,0.738 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.011:0.989,0.011,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.343:0.657,0.343,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.67:0.027,0.277,0.697 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.006,0.089,0.905 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.721:0.015,0.249,0.736 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 16523463 SNP-3.16522107. A G . PASS AR2=0.975;DR2=0.98;AF=0.346 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.819,0.172,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.821:0.008,0.162,0.829 1|1:1.756:0.015,0.214,0.771 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.822:0.01,0.159,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.811:0.01,0.169,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.278:0.723,0.277,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.598:0.402,0.598,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.659:0.038,0.266,0.696 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.073:0.929,0.069,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.658:0.413,0.515,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.251:0.766,0.216,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.739:0.013,0.234,0.753 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.89:0.004,0.102,0.894 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.299:0.709,0.283,0.008 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.217:0.798,0.187,0.015 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.739:0.013,0.234,0.753 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.849:0.007,0.138,0.855 1|0:1.162:0.198,0.442,0.36 0|1:1:0,1,0 0|0:0:1,0,0 +3 16524472 SNP-3.16523116. A G . PASS AR2=0.98;DR2=0.987;AF=0.375 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.534:0.586,0.294,0.12 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.001,0.085,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.632:0.473,0.422,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.131:0.183,0.503,0.314 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.229:0.79,0.191,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.643:0.054,0.249,0.697 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.558:0.56,0.322,0.118 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.802,0.179,0.019 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.578:0.423,0.576,0.001 0|0:0:1,0,0 +3 16528169 SNP-3.16526813. A G . PASS AR2=0.933;DR2=0.948;AF=0.412 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.769:0.374,0.483,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|1:0.841:0.335,0.49,0.175 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|1:0.758:0.355,0.533,0.112 0|0:0:1,0,0 0|0:0.828:0.349,0.473,0.177 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.749:0.394,0.463,0.143 1|1:1.984:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.668:0.444,0.444,0.112 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.26:0.74,0.26,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.667:0.445,0.444,0.112 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.761:0.387,0.465,0.148 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.665:0.446,0.443,0.111 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.668:0.444,0.444,0.112 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.667:0.445,0.444,0.111 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.668:0.444,0.444,0.112 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.668:0.444,0.444,0.112 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.803:0.359,0.479,0.162 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.813:0.354,0.479,0.167 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.831:0.34,0.489,0.171 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.756:0.245,0.754,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.668:0.444,0.444,0.112 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.706:0.426,0.441,0.133 0|1:0.756:0.389,0.466,0.145 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.665:0.446,0.443,0.111 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.668:0.444,0.444,0.112 1|0:0.668:0.444,0.444,0.112 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.668:0.444,0.444,0.112 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.8:0.363,0.474,0.163 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0.208:0.792,0.208,0 0|0:0:1,0,0 +3 16528623 SNP-3.16527267. A G . PASS AR2=1;DR2=1;AF=0.208 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 16529883 SNP-3.16528527. A G . PASS AR2=0.996;DR2=0.996;AF=0.366 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.01:0.251,0.488,0.261 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.01:0.251,0.488,0.261 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16530467 SNP-3.16529111. A G . PASS AR2=0.963;DR2=0.974;AF=0.229 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.622:0.47,0.438,0.092 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.696:0.425,0.455,0.12 0|0:0.534:0.538,0.39,0.072 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.104:0.899,0.098,0.003 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.713,0.273,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.251:0.769,0.211,0.02 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.849:0.338,0.474,0.188 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.541:0.533,0.394,0.074 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.708:0.409,0.474,0.117 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.611:0.477,0.435,0.088 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 16530583 SNP-3.16529227. A G . PASS AR2=0.861;DR2=0.894;AF=0.25 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.686:0.432,0.45,0.118 0|1:0.686:0.432,0.45,0.118 0|1:0.685:0.433,0.449,0.118 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.671:0.441,0.446,0.113 0|1:0.665:0.445,0.445,0.11 0|0:0.687:0.432,0.45,0.118 0|0:0.683:0.434,0.449,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.686:0.432,0.45,0.118 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.686:0.432,0.45,0.118 1|1:2:0,0,1 0|1:0.686:0.432,0.45,0.118 0|0:0.686:0.432,0.45,0.118 0|0:0.69:0.43,0.451,0.119 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.621:0.477,0.425,0.098 0|1:0.662:0.45,0.439,0.111 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.686:0.432,0.45,0.118 0|0:0.381:0.657,0.306,0.038 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.343:0.657,0.343,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.381:0.657,0.306,0.038 0|0:0:1,0,0 0|0:0.381:0.657,0.306,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.664:0.447,0.442,0.111 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 1|0:0.686:0.432,0.45,0.118 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.683:0.434,0.449,0.117 0|0:0:1,0,0 1|0:0.682:0.435,0.449,0.117 1|0:0.686:0.432,0.45,0.118 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.381:0.657,0.306,0.038 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 1|0:0.682:0.435,0.449,0.116 0|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|0:0.685:0.433,0.45,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.651:0.455,0.439,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|1:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.686:0.432,0.45,0.118 1|0:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 +3 16530591 SNP-3.16529235. A G . PASS AR2=0.999;DR2=0.999;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.838,0.158,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16530801 SNP-3.16529445. A G . PASS AR2=0.999;DR2=0.999;AF=0.36 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16537232 SNP-3.16535876. C A . PASS AR2=0.977;DR2=0.982;AF=0.399 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.156:0.85,0.144,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.706:0.34,0.614,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.147,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.786,0.2,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.873,0.123,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.187:0.834,0.146,0.021 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.158:0.847,0.149,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.298:0.737,0.228,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.618:0.406,0.571,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.86,0.134,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.982:0.255,0.509,0.237 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.878,0.113,0.009 1|1:2:0,0,1 0|0:0.773:0.472,0.284,0.245 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.745,0.245,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.65:0.373,0.604,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.911,0.085,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.157:0.85,0.144,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16548895 SNP-3.16547539. A G . PASS AR2=0.989;DR2=0.99;AF=0.198 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.849,0.143,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.285:0.73,0.255,0.015 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.197:0.814,0.175,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.854,0.14,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.85,0.144,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.241:0.774,0.212,0.015 0|0:0:1,0,0 +3 16548979 SNP-3.16547623. A G . PASS AR2=0.999;DR2=0.999;AF=0.228 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.083,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16549393 SNP-3.16548037. A G . PASS AR2=0.982;DR2=0.982;AF=0.328 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.085:0.212,0.491,0.297 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.015:0.242,0.502,0.256 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.644:0.001,0.354,0.645 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.015:0.242,0.502,0.256 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.015:0.241,0.502,0.256 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.015:0.242,0.502,0.256 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.038:0.234,0.494,0.272 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 16549481 SNP-3.16548125. A G . PASS AR2=0.994;DR2=0.995;AF=0.192 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.696,0.273,0.031 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.89,0.106,0.004 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.063:0.937,0.063,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.891,0.1,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.07:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 16549648 SNP-3.16548292. C A . PASS AR2=0.966;DR2=0.977;AF=0.251 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.482:0.146,0.225,0.628 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.142:0.867,0.125,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.952,0.047,0.001 0|0:0.041:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0.16:0.845,0.149,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.949,0.047,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.133:0.867,0.133,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.578:0.039,0.344,0.617 1|1:1.525:0.008,0.458,0.534 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.75:0.439,0.372,0.189 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0.004,0.099,0.898 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.557:0.016,0.41,0.573 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.482:0.038,0.442,0.52 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.169:0.84,0.151,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.006:0.994,0.006,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.832,0.158,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.867,0.125,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.527:0.101,0.27,0.629 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.08:0.92,0.08,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16549691 SNP-3.16548335. A G . PASS AR2=1;DR2=1;AF=0.282 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16549728 SNP-3.16548372. A G . PASS AR2=0.992;DR2=0.994;AF=0.279 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.316:0.688,0.308,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.034:0.966,0.034,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.003,0.112,0.884 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.003,0.109,0.888 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.004,0.119,0.876 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.004,0.12,0.876 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.001,0.073,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.563:0.438,0.56,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.003,0.108,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16550325 SNP-3.16548969. A G . PASS AR2=0.976;DR2=0.981;AF=0.263 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.747:0.017,0.22,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.021,0.264,0.714 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.739:0,0.261,0.739 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.745:0.017,0.222,0.761 1|1:1.747:0.017,0.22,0.764 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.693:0.021,0.264,0.714 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.017,0.222,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.812:0.008,0.172,0.82 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.76:0.267,0.706,0.027 0|0:0:1,0,0 1|1:1.747:0.017,0.22,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.744:0.017,0.222,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.747:0.017,0.22,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.943,0.055,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.694:0.022,0.261,0.716 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.017,0.223,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.017,0.222,0.761 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16550359 SNP-3.16549003. A G . PASS AR2=0.992;DR2=0.993;AF=0.191 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.102:0.901,0.097,0.002 0|0:0.143:0.86,0.137,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.078,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 1|1:2:0,0,1 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.881,0.117,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.145:0.861,0.134,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.099,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.097,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16550385 SNP-3.16549029. C A . PASS AR2=0.961;DR2=0.972;AF=0.229 GT:DS:GP 1|0:0.812:0.318,0.552,0.13 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.551:0.499,0.451,0.05 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.984:0.145,0.727,0.128 1|1:2:0,0,1 0|0:0.3:0.725,0.25,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.009,0.133,0.859 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.884,0.114,0.001 1|1:1.475:0.077,0.372,0.552 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.077:0.924,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.253:0.764,0.219,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.302:0.724,0.251,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.729,0.246,0.025 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.626:0.049,0.276,0.675 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.717,0.255,0.028 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0.001,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.355:0.134,0.377,0.489 0|0:0.299:0.726,0.249,0.025 1|1:1.977:0.001,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16550983 SNP-3.16549627. A G . PASS AR2=0.998;DR2=0.999;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.83,0.164,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16551258 SNP-3.16549902. A G . PASS AR2=0.977;DR2=0.983;AF=0.303 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.055:0.947,0.052,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.22:0.791,0.198,0.011 0|0:0.242:0.772,0.214,0.014 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.313:0.712,0.263,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.315:0.71,0.266,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.857:0.005,0.133,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.7,0.289,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.537:0.029,0.406,0.566 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.005,0.133,0.862 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.857:0.005,0.133,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.857:0.005,0.133,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.432:0.129,0.31,0.561 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 +3 16552163 SNP-3.16550807. C A . 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C A . PASS AR2=0.998;DR2=0.999;AF=0.269 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.765,0.233,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16556476 SNP-3.16555120. C A . PASS AR2=1;DR2=1;AF=0.432 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.919:0.001,0.078,0.92 1|0:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16557632 SNP-3.16556276. A G . PASS AR2=0.956;DR2=0.966;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.813:0.187,0.813,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.763,0.237,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.615:0.48,0.425,0.095 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.922:0.292,0.494,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.923:0.292,0.494,0.214 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.922:0.292,0.494,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.863:0.326,0.486,0.188 0|1:0.882:0.314,0.49,0.196 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.894:0.306,0.494,0.2 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.641:0.462,0.435,0.103 1|0:0.641:0.462,0.435,0.103 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.641:0.462,0.435,0.103 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.922:0.292,0.494,0.214 1|0:0.889:0.316,0.48,0.205 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.949,0.05,0.002 0|0:0:1,0,0 +3 16559052 SNP-3.16557696. A G . PASS AR2=0.998;DR2=0.999;AF=0.441 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0,0.294,0.706 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.876:0,0.124,0.876 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16559774 SNP-3.16558418. A G . PASS AR2=0.999;DR2=0.999;AF=0.448 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.766,0.218,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16560375 SNP-3.16559019. A G . PASS AR2=0.914;DR2=0.93;AF=0.387 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 1|1:1.813:0.009,0.17,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.006,0.144,0.85 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 1|1:1.844:0.006,0.144,0.85 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.461:0.077,0.385,0.538 1|1:1.844:0.006,0.144,0.85 1|1:1.844:0.006,0.144,0.85 1|1:1.844:0.006,0.144,0.85 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.828:0.007,0.159,0.834 1|1:1.8:0.011,0.179,0.811 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.797:0.011,0.181,0.808 1|1:1.803:0.01,0.176,0.814 1|1:1.802:0.01,0.177,0.813 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.572:0.042,0.343,0.615 1|1:2:0,0,1 1|1:1.67:0.022,0.286,0.692 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.01,0.177,0.812 1|1:1.8:0.011,0.179,0.811 1|1:1.429:0.085,0.401,0.514 0|0:0:1,0,0 1|0:1.419:0.087,0.407,0.506 1|1:1.8:0.011,0.179,0.811 1|1:1.482:0.067,0.384,0.549 0|1:1.419:0.087,0.407,0.506 1|1:2:0,0,1 1|1:1.8:0.011,0.179,0.811 1|1:1.809:0.01,0.171,0.819 1|1:1.8:0.011,0.179,0.811 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 1|1:2:0,0,1 1|1:1.8:0.011,0.179,0.811 1|1:1.433:0.083,0.401,0.516 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.801:0.01,0.178,0.812 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.419:0.087,0.407,0.506 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.858:0.005,0.132,0.863 1|0:1.844:0.006,0.144,0.85 1|1:1.844:0.006,0.144,0.85 1|1:1.507:0.058,0.376,0.566 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.802:0.01,0.177,0.813 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.456:0.079,0.386,0.535 1|1:1.8:0.011,0.179,0.811 1|1:1.844:0.006,0.144,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.01,0.177,0.813 1|1:1.847:0.006,0.141,0.853 1|1:1.802:0.01,0.177,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 1|1:1.8:0.011,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.005,0.124,0.871 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.429:0.085,0.401,0.514 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.429:0.085,0.401,0.514 1|1:1.844:0.006,0.144,0.85 0|0:0:1,0,0 1|0:1.364:0.107,0.422,0.471 1|1:1.838:0.009,0.145,0.846 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 1|1:1.422:0.086,0.406,0.508 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.8:0.011,0.179,0.811 1|0:1.436:0.082,0.399,0.518 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.006,0.141,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.43:0.084,0.401,0.515 1|1:1.649:0.045,0.26,0.694 0|0:0:1,0,0 1|1:2:0,0,1 +3 16560612 SNP-3.16559256. A G . PASS AR2=1;DR2=1;AF=0.436 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16560855 SNP-3.16559499. C A . PASS AR2=1;DR2=1;AF=0.268 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16562821 SNP-3.16561465. A G . PASS AR2=0.995;DR2=0.995;AF=0.416 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.004,0.121,0.874 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.809:0.008,0.175,0.817 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.87:0.004,0.122,0.874 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0,0.041,0.958 1|1:2:0,0,1 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.87:0.004,0.121,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.87:0.004,0.121,0.874 1|1:2:0,0,1 1|1:1.873:0.004,0.119,0.877 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.956 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.957 1|1:2:0,0,1 1|1:1.934:0.002,0.062,0.936 0|0:0:1,0,0 1|1:2:0,0,1 +3 16564271 SNP-3.16562915. A G . PASS AR2=0.985;DR2=0.986;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0.067:0.934,0.065,0.001 0|0:0.077:0.925,0.073,0.002 0|0:0.077:0.925,0.074,0.002 0|0:0.073:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:1.929:0.001,0.068,0.931 1|1:1.901:0.002,0.096,0.902 1|1:1.9:0.002,0.097,0.902 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.682:0.318,0.681,0 1|1:2:0,0,1 1|0:0.97:0.033,0.963,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.069,0.93 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.065,0.933 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.002 0|0:0.074:0.928,0.071,0.001 0|0:0.216:0.784,0.216,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0.074:0.927,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.002,0.075,0.923 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.002,0.082,0.916 0|0:0.07:0.932,0.067,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.001,0.065,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16566367 SNP-3.16565011. A G . PASS AR2=0.867;DR2=0.882;AF=0.288 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.505:0.059,0.377,0.564 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.935:0.285,0.496,0.22 1|0:0.969:0.265,0.501,0.234 0|1:0.89:0.308,0.494,0.198 1|1:2:0,0,1 1|0:0.962:0.269,0.5,0.231 0|0:0:1,0,0 0|1:0.997:0.25,0.502,0.248 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.824:0.363,0.45,0.187 0|0:0:1,0,0 0|0:1.031:0.239,0.491,0.27 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.939:0.283,0.496,0.221 1|0:0.939:0.283,0.496,0.221 1|1:1.201:0.155,0.489,0.356 0|1:0.939:0.283,0.496,0.221 1|0:0.954:0.274,0.498,0.228 1|1:2:0,0,1 1|1:1.588:0.043,0.326,0.631 0|0:0:1,0,0 1|1:1.582:0.044,0.33,0.626 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.581:0.044,0.331,0.625 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.577:0.045,0.333,0.622 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.618:0.036,0.311,0.654 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.576:0.045,0.334,0.621 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.576:0.045,0.334,0.621 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.766:0.368,0.498,0.134 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.939:0.283,0.496,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.936:0.284,0.496,0.22 0|0:0:1,0,0 0|0:0.936:0.284,0.496,0.22 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.939:0.283,0.496,0.221 0|0:0:1,0,0 0|1:0.935:0.284,0.496,0.22 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.938:0.283,0.496,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.954:0.274,0.498,0.228 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.958:0.272,0.499,0.229 0|1:1.575:0.045,0.334,0.621 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.576:0.045,0.334,0.621 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.939:0.283,0.496,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.123:0.194,0.49,0.317 0|1:0.999:0.245,0.511,0.244 0|0:0:1,0,0 0|1:1.123:0.194,0.49,0.317 0|0:0.939:0.283,0.496,0.221 0|0:0:1,0,0 1|0:1.195:0.17,0.465,0.365 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.576:0.045,0.334,0.621 0|0:0:1,0,0 1|1:1.776:0.023,0.178,0.799 0|0:0:1,0,0 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.576:0.045,0.334,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0.246,0.509,0.245 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 16566848 SNP-3.16565492. A G . PASS AR2=0.935;DR2=0.951;AF=0.511 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.892:0.291,0.527,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.88:0.005,0.111,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.792:0.008,0.193,0.8 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.369:0.64,0.35,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.005,0.11,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.514:0.559,0.367,0.073 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.755:0.018,0.21,0.772 1|1:2:0,0,1 0|1:1.634:0.032,0.301,0.667 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.005,0.159,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.682:0.437,0.445,0.118 1|1:1.77:0.018,0.193,0.788 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.745:0.02,0.216,0.765 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.019,0.236,0.745 1|1:2:0,0,1 0|0:0.642:0.464,0.43,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.566:0.051,0.333,0.616 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.873,0.127,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.366:0.072,0.49,0.438 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.51:0.015,0.461,0.524 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.766:0.306,0.623,0.071 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.007,0.114,0.879 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.901,0.095,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.629:0.473,0.424,0.103 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.134:0.183,0.5,0.317 1|1:1.674:0.04,0.247,0.713 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.005,0.11,0.885 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.002,0.043,0.956 1|0:1.619:0.034,0.314,0.652 1|1:1.647:0.027,0.299,0.674 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.914,0.075,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.005,0.11,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.698:0.03,0.243,0.728 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.96:0.256,0.528,0.216 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.574:0.048,0.329,0.622 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.707:0.015,0.263,0.722 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.72:0.023,0.235,0.743 1|1:2:0,0,1 0|0:0.102:0.909,0.08,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.224:0.176,0.425,0.4 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.566:0.051,0.333,0.616 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.629:0.473,0.424,0.103 0|0:0.402:0.613,0.372,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.62:0.039,0.302,0.659 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.71:0.426,0.438,0.136 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.03,0.179,0.791 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16569869 SNP-3.16568513. A G . PASS AR2=1;DR2=1;AF=0.446 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 +3 16574681 SNP-3.16573325. C A . PASS AR2=0.996;DR2=0.997;AF=0.275 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.078:0.923,0.077,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.849:0,0.15,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.451:0.021,0.508,0.471 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16576245 SNP-3.16574889. A G . PASS AR2=1;DR2=1;AF=0.432 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.999:0.001,0.999,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16586851 SNP-3.16585495. C A . PASS AR2=0.998;DR2=0.998;AF=0.431 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.073,0.926 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0.002,0.995,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.86:0.002,0.136,0.862 1|1:1.83:0.009,0.153,0.839 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0.001,0.024,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 16589439 SNP-3.16588083. A G . PASS AR2=0.958;DR2=0.971;AF=0.21 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.451:0.07,0.41,0.52 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.658:0.034,0.274,0.692 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.333:0.117,0.434,0.449 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.174:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0.129:0.875,0.122,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.804,0.185,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.422:0.644,0.289,0.066 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.47:0.062,0.406,0.532 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.943,0.055,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.262:0.758,0.223,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.492:0.579,0.35,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.146,0.007 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.806,0.184,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0.032,0.235,0.733 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16589518 SNP-3.16588162. C A . PASS AR2=0.958;DR2=0.969;AF=0.374 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.604:0.035,0.327,0.638 1|1:1.535:0.054,0.357,0.589 1|1:1.355:0.113,0.419,0.468 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.4:0.1,0.399,0.5 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.741:0.009,0.24,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.429:0.203,0.165,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.686:0.345,0.624,0.031 1|0:1:0,1,0 0|0:0.556:0.454,0.536,0.01 0|1:1.097:0.145,0.614,0.242 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.738:0.011,0.24,0.749 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.16:0.856,0.129,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.409:0.085,0.421,0.494 0|0:0:1,0,0 1|1:1.548:0.042,0.368,0.59 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.952:0.084,0.881,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.118:0.118,0.646,0.236 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.002,0.061,0.936 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.014,0.215,0.771 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.005,0.139,0.857 1|1:1.831:0.001,0.167,0.832 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.749:0.022,0.206,0.772 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.002,0.032,0.966 0|0:0:1,0,0 1|1:1.89:0.002,0.106,0.892 0|0:0:1,0,0 1|1:1.955:0.002,0.041,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.742:0.021,0.216,0.763 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.25:0.782,0.185,0.033 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.023,0.181,0.796 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16589605 SNP-3.16588249. A G . PASS AR2=0.996;DR2=0.997;AF=0.298 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.038:0.963,0.037,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.064,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.593:0.407,0.593,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.014:0.986,0.013,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.838,0.15,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16589757 SNP-3.16588401. C A . PASS AR2=0.999;DR2=0.999;AF=0.452 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.892,0.107,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.976,0.023,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 16590643 SNP-3.16589287. A G . PASS AR2=1;DR2=1;AF=0.492 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16591121 SNP-3.16589765. A G . PASS AR2=0.975;DR2=0.98;AF=0.342 GT:DS:GP 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0.018:0.982,0.018,0 0|0:0.055:0.947,0.051,0.002 0|0:0.049:0.952,0.046,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.174:0.84,0.145,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.555:0.445,0.555,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.822,0.17,0.009 0|0:0.181:0.827,0.164,0.008 0|0:0.181:0.828,0.164,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.184:0.825,0.167,0.009 0|1:0.978:0.045,0.932,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.817,0.174,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.851:0.008,0.133,0.859 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.803,0.186,0.011 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.178:0.83,0.162,0.008 0|0:0.026:0.974,0.025,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.158:0.842,0.158,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0.179:0.829,0.163,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.104:0.896,0.104,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.447:0.588,0.378,0.035 0|0:0.099:0.905,0.092,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.908,0.092,0.001 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.315:0.705,0.274,0.02 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.181:0.827,0.165,0.008 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.183:0.825,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 0|0:0.196:0.821,0.161,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.817,0.174,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.234:0.782,0.201,0.017 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16594838 SNP-3.16593482. C A . PASS AR2=0.961;DR2=0.969;AF=0.436 GT:DS:GP 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.235:0.78,0.206,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.685:0.316,0.684,0 0|0:0.305:0.719,0.256,0.025 0|0:0.191:0.818,0.172,0.01 0|0:0.246:0.771,0.213,0.016 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.39:0.646,0.318,0.036 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.167:0.842,0.148,0.009 0|0:0.065:0.937,0.062,0.001 0|0:0.33:0.698,0.274,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.687,0.284,0.03 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|1:1:0,1,0 0|0:0.387:0.649,0.315,0.036 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.887:0.182,0.75,0.069 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.386:0.65,0.315,0.036 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.986:0.059,0.895,0.045 0|0:0.185:0.824,0.167,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.787,0.199,0.014 0|0:0.313:0.712,0.263,0.025 0|0:0.187:0.822,0.169,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.148,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.191:0.818,0.172,0.01 0|0:0.465:0.544,0.448,0.009 0|0:0:1,0,0 1|0:0.286:0.726,0.262,0.012 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.309:0.716,0.259,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.215:0.798,0.189,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.07:0.93,0.07,0 0|0:0.119:0.886,0.11,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.34:0.69,0.281,0.029 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.098:0.907,0.089,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.035,0.965 0|0:0.324:0.703,0.27,0.027 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.356:0.677,0.289,0.034 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0.31:0.715,0.26,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.179:0.83,0.161,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.916,0.084,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16598761 SNP-3.16597405. A G . PASS AR2=1;DR2=1;AF=0.296 GT:DS:GP 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16599384 SNP-3.16598028. A G . PASS AR2=1;DR2=1;AF=0.446 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16600374 SNP-3.16599018. A G . PASS AR2=0.915;DR2=0.944;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.692:0.389,0.53,0.081 0|0:0.164:0.84,0.156,0.004 0|0:0:1,0,0 0|0:0.628:0.47,0.432,0.098 1|1:1.92:0.002,0.077,0.922 0|0:0.182:0.825,0.168,0.007 0|1:0.643:0.465,0.427,0.108 0|1:0.703:0.427,0.442,0.131 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.892:0.291,0.527,0.183 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.553:0.541,0.365,0.094 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.385:0.65,0.315,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.459:0.583,0.374,0.043 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.317:0.143,0.397,0.46 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.001:0.344,0.311,0.345 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.725:0.023,0.229,0.748 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.723:0.398,0.481,0.121 0|0:0.39:0.657,0.295,0.047 0|0:0.227:0.785,0.203,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.686:0.326,0.662,0.012 1|1:2:0,0,1 0|0:0.636:0.468,0.427,0.104 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.266:0.752,0.23,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.513:0.552,0.383,0.065 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.544:0.537,0.383,0.081 0|0:0.542:0.571,0.317,0.112 1|0:1.204:0.111,0.573,0.316 1|1:2:0,0,1 0|0:0.792:0.389,0.431,0.18 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.536:0.526,0.412,0.062 1|1:2:0,0,1 0|0:0.656:0.46,0.424,0.116 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.712:0.41,0.468,0.122 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.398:0.136,0.33,0.534 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.196:0.103,0.597,0.299 0|0:0:1,0,0 0|0:0.571:0.5,0.429,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.423:0.645,0.287,0.068 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.814,0.164,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16600820 SNP-3.16599464. C A . 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A G . PASS AR2=0.996;DR2=0.996;AF=0.248 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 1|1:1.901:0.003,0.093,0.904 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.91:0.002,0.085,0.913 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.137:0.863,0.137,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.904:0.002,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.007,0.156,0.837 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.002,0.066,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16601019 SNP-3.16599663. C A . PASS AR2=0.991;DR2=0.993;AF=0.476 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.285:0.734,0.247,0.019 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.255:0.762,0.22,0.017 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.267:0.751,0.23,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.319:0.69,0.3,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.782,0.206,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.765,0.218,0.017 0|0:0.253:0.764,0.219,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16601645 SNP-3.16600289. A G . PASS AR2=0.989;DR2=0.992;AF=0.215 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.623:0.032,0.313,0.655 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.696:0.017,0.269,0.714 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.786:0.015,0.183,0.802 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.667:0.021,0.29,0.689 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.786:0.015,0.184,0.801 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16602272 SNP-3.16600916. C A . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16608415 SNP-3.16607059. A G . PASS AR2=0.986;DR2=0.988;AF=0.314 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.84,0.154,0.007 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.161:0.845,0.148,0.006 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.003:0.06,0.876,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.014,0.169,0.817 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.883,0.113,0.004 0|0:0.152:0.853,0.141,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.139:0.866,0.129,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.099,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.956,0.043,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.113:0.891,0.105,0.004 0|0:0.201:0.813,0.173,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.904:0.002,0.092,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0,0.053,0.947 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.107,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.002,0.247,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.069:0.933,0.065,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.005,0.112,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.029,0.97 1|1:1.908:0.003,0.085,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.094,0.003 1|1:1.877:0.005,0.113,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16608823 SNP-3.16607467. A G . PASS AR2=0.984;DR2=0.986;AF=0.271 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.813:0.009,0.168,0.822 0|0:0:1,0,0 1|1:1.838:0.009,0.143,0.847 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.013,0.159,0.828 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.838:0.006,0.15,0.844 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.77:0.017,0.196,0.787 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.725:0.016,0.242,0.742 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0.001,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.749:0.016,0.219,0.765 0|1:1:0,1,0 1|1:1.805:0.01,0.175,0.815 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.003,0.064,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.79:0.01,0.189,0.8 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.013,0.201,0.787 0|0:0:1,0,0 1|1:1.833:0.008,0.15,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.744:0.014,0.229,0.758 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.012,0.115,0.874 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0.002,0.035,0.964 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16609108 SNP-3.16607752. C A . PASS AR2=0.947;DR2=0.961;AF=0.423 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.772:0.046,0.137,0.818 0|0:0.242:0.774,0.211,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.524:0.519,0.438,0.043 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.021:0.322,0.335,0.343 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.366:0.083,0.469,0.448 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.993:0.259,0.49,0.252 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.489:0.518,0.476,0.007 1|0:1:0,1,0 0|0:1.037:0.235,0.492,0.272 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.379:0.657,0.307,0.036 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.695,0.27,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.219:0.059,0.662,0.278 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.102:0.173,0.552,0.275 0|0:0:1,0,0 0|1:1.193:0.075,0.656,0.269 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.336:0.121,0.422,0.457 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.295:0.014,0.676,0.31 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.019:0.208,0.564,0.227 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.61:0.007,0.376,0.617 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.915:0.273,0.54,0.188 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.032,0.211,0.757 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:1.98:0,0.02,0.98 1|0:0.968:0.065,0.902,0.033 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.587:0.045,0.323,0.632 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.03,0.213,0.757 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.783:0.351,0.515,0.134 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.107:0.898,0.098,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.771,0.218,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.187:0.828,0.157,0.015 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.768,0.213,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.853,0.139,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 +3 16609519 SNP-3.16608163. A G . PASS AR2=0.959;DR2=0.967;AF=0.282 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.804:0.007,0.182,0.811 0|0:0.969:0.282,0.466,0.252 1|1:1.893:0.005,0.097,0.898 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.774:0.017,0.191,0.791 1|1:2:0,0,1 1|1:1.905:0.004,0.088,0.909 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.321:0.705,0.269,0.026 0|0:0:1,0,0 0|0:0.273:0.747,0.233,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.234:0.781,0.205,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.067:0.046,0.84,0.114 0|0:0.284:0.737,0.242,0.021 0|0:0.231:0.782,0.205,0.013 0|0:0:1,0,0 1|1:1.632:0.052,0.264,0.684 1|1:2:0,0,1 1|1:1.537:0.076,0.312,0.613 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.859:0.245,0.651,0.104 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.878:0.321,0.48,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.55:0.067,0.316,0.617 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.815:0.022,0.141,0.837 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.006,0.097,0.896 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.003,0.068,0.929 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.004,0.129,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.007,0.081,0.912 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0.032,0.117,0.851 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.642:0.047,0.265,0.689 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.435:0.149,0.267,0.584 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.524:0.07,0.335,0.595 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16612026 SNP-3.16610670. C A . PASS AR2=0.987;DR2=0.99;AF=0.451 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.158:0.842,0.158,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.878,0.117,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.105:0.896,0.102,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.896,0.104,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.933:0.001,0.064,0.935 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.803:0.001,0.195,0.804 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.009,0.127,0.864 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.797:0.013,0.177,0.81 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.652:0.522,0.305,0.173 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.679:0.396,0.528,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.741:0.018,0.223,0.759 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16612581 SNP-3.16611225. C A . PASS AR2=0.998;DR2=0.999;AF=0.459 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.967:0,0.033,0.967 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.007,0.139,0.854 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.871,0.117,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16612603 SNP-3.16611247. C A . PASS AR2=0.994;DR2=0.995;AF=0.496 GT:DS:GP 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.969:0,0.031,0.969 0|0:0.089:0.916,0.079,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0.185:0.82,0.174,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.144:0.861,0.135,0.005 0|0:0.067:0.935,0.063,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.074:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0.07:0.931,0.069,0.001 0|0:0.074:0.927,0.071,0.002 0|1:1:0,1,0 0|0:0.04:0.961,0.038,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0,0.155,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.811,0.179,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.074:0.927,0.072,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 +3 16613494 SNP-3.16612138. A G . PASS AR2=0.991;DR2=0.992;AF=0.238 GT:DS:GP 0|0:0.036:0.965,0.034,0.001 0|0:0.008:0.992,0.008,0 0|0:0.115:0.888,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.075:0.927,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0.05:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.003:0.001,0.995,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.916,0.077,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.031:0.97,0.029,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.943,0.056,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.08,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.261:0.742,0.254,0.003 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 +3 16614917 SNP-3.16613561. C A . PASS AR2=0.947;DR2=0.957;AF=0.281 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.517:0.091,0.302,0.608 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.748,0.25,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.032,0.197,0.771 1|0:1.183:0.084,0.65,0.267 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0,0.083,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.601:0.007,0.385,0.608 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.785:0.322,0.572,0.106 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.119:0.881,0.119,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.935:0.001,0.063,0.936 0|0:0:1,0,0 1|1:1.577:0.033,0.358,0.61 0|0:0:1,0,0 1|1:1.843:0.017,0.123,0.86 1|1:1.742:0.022,0.215,0.764 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.912:0.299,0.491,0.21 1|1:1.698:0.034,0.234,0.732 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.621:0.043,0.292,0.665 0|0:0:1,0,0 1|1:1.736:0.024,0.216,0.76 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.849:0.017,0.117,0.866 1|1:2:0,0,1 1|1:1.853:0,0.147,0.853 1|1:2:0,0,1 1|1:1.643:0.041,0.275,0.684 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.903:0.304,0.489,0.207 1|1:1.716:0.03,0.225,0.746 0|1:0.903:0.304,0.489,0.207 0|0:0:1,0,0 1|0:0.845:0.316,0.524,0.16 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.666:0.045,0.245,0.711 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.073:0.933,0.061,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.006,0.08,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.903:0.304,0.489,0.207 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.971:0.001,0.027,0.972 0|0:0:1,0,0 1|1:1.779:0.022,0.176,0.801 0|0:0.776:0.447,0.33,0.223 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.003,0.064,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.035,0.204,0.761 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16626255 SNP-3.16624899. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16626456 SNP-3.16625100. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16627656 SNP-3.16626300. A G . PASS AR2=0.998;DR2=0.998;AF=0.204 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.865:0.004,0.126,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.862:0.005,0.128,0.867 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16629653 SNP-3.16628297. A G . PASS AR2=0.996;DR2=0.996;AF=0.454 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.955:0.24,0.564,0.196 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.022:0.005,0.967,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.076:0.925,0.075,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.069:0.934,0.063,0.003 1|1:2:0,0,1 +3 16629905 SNP-3.16628549. C A . PASS AR2=0.998;DR2=0.998;AF=0.495 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.369:0.742,0.148,0.111 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16630371 SNP-3.16629015. A G . PASS AR2=1;DR2=1;AF=0.292 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.987:0.014,0.985,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16630882 SNP-3.16629526. C A . PASS AR2=0.999;DR2=0.999;AF=0.232 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.924,0.076,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16633913 SNP-3.16632557. C A . PASS AR2=0.952;DR2=0.964;AF=0.382 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.098:0.903,0.096,0.001 0|0:0:1,0,0 0|0:0.227:0.786,0.202,0.013 0|0:0.62:0.498,0.385,0.118 0|0:0.219:0.793,0.195,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.167:0.841,0.152,0.008 0|0:0.201:0.807,0.186,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.345:0.684,0.287,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.887,0.111,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.056,0.002 1|0:0.375:0.629,0.368,0.003 0|0:0.15:0.857,0.136,0.007 0|0:0:1,0,0 0|0:0.218:0.789,0.204,0.007 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.203:0.809,0.18,0.012 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.188:0.821,0.17,0.009 0|0:0:1,0,0 0|0:0.441:0.606,0.346,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.858,0.137,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.837,0.157,0.007 0|0:0.482:0.578,0.363,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.143:0.862,0.133,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0 0|0:0.006:0.994,0.006,0 0|0:0.022:0.979,0.021,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.421:0.619,0.342,0.039 0|0:0:1,0,0 0|0:0.51:0.557,0.375,0.067 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.137,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.608:0.495,0.403,0.102 0|0:0.122:0.882,0.114,0.004 0|0:0.125:0.879,0.116,0.005 0|0:0.459:0.595,0.351,0.054 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.798,0.178,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.892,0.103,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.356:0.66,0.324,0.016 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.138:0.867,0.129,0.005 0|0:0.145:0.862,0.13,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.35:0.678,0.294,0.028 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.11:0.893,0.103,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.781,0.185,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.905,0.09,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.055:0.945,0.055,0 1|1:2:0,0,1 0|0:0.403:0.641,0.315,0.044 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16635723 SNP-3.16634367. A G . PASS AR2=1;DR2=1;AF=0.278 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16636564 SNP-3.16635208. A G . PASS AR2=0.999;DR2=1;AF=0.286 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.093:0.912,0.083,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16636964 SNP-3.16635608. C A . PASS AR2=0.994;DR2=0.995;AF=0.454 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.94,0.06,0 0|0:0.022:0.978,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.677:0.033,0.257,0.71 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.52:0.108,0.264,0.628 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.223:0.796,0.185,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16638512 SNP-3.16637156. A G . PASS AR2=1;DR2=1;AF=0.492 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16638642 SNP-3.16637286. A G . PASS AR2=0.951;DR2=0.964;AF=0.416 GT:DS:GP 0|0:0.117:0.893,0.098,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.736:0.442,0.38,0.178 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.386:0.665,0.285,0.051 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.213:0.799,0.189,0.012 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.937 0|1:1.261:0.12,0.5,0.381 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.745:0.016,0.222,0.761 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.327:0.108,0.456,0.435 1|1:1.644:0.037,0.283,0.681 1|1:2:0,0,1 1|1:1.748:0.016,0.22,0.764 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.184:0.165,0.486,0.349 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.371:0.118,0.393,0.489 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.76:0.015,0.211,0.775 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.484:0.046,0.424,0.53 1|1:1.718:0.02,0.242,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.729:0.019,0.233,0.748 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.652:0.029,0.29,0.681 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.009,0.166,0.825 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.002,0.08,0.918 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.763:0.014,0.209,0.777 0|0:0.249:0.767,0.216,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.478:0.563,0.396,0.041 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.078:0.923,0.077,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.468:0.064,0.405,0.531 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.817:0.009,0.166,0.825 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.724:0.035,0.205,0.76 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.138:0.189,0.483,0.328 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.236:0.157,0.45,0.393 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16639411 SNP-3.16638055. A G . PASS AR2=0.961;DR2=0.969;AF=0.262 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0.001,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.662:0.449,0.44,0.111 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.736:0.403,0.459,0.139 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.7:0.423,0.455,0.123 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.749:0.392,0.467,0.141 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.695:0.426,0.453,0.121 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.696:0.425,0.454,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.424:0.59,0.396,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.73:0.412,0.447,0.142 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.696:0.425,0.454,0.121 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.793:0.371,0.466,0.163 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.977,0.022,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.696:0.425,0.454,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16642376 SNP-3.16641020. A G . PASS AR2=0.944;DR2=0.959;AF=0.278 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.554:0.025,0.395,0.58 0|0:0:1,0,0 1|1:1.565:0.064,0.308,0.628 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.149:0.209,0.432,0.358 0|1:1.174:0.16,0.507,0.334 1|1:1.736:0.018,0.228,0.754 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.76:0.376,0.487,0.137 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.8:0.013,0.174,0.813 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0.011,0.176,0.813 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.795:0.421,0.362,0.216 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.935,0.062,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0.068:0.935,0.062,0.003 0|0:0:1,0,0 0|0:0.211:0.791,0.207,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.918,0.082,0 1|0:1:0,1,0 0|0:0.093:0.911,0.085,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.305:0.706,0.284,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.059:0.943,0.056,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.959,0.039,0.002 0|0:0.08:0.922,0.077,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.917,0.08,0.003 0|0:0:1,0,0 1|1:1.891:0.006,0.097,0.897 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.006,0.108,0.886 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.42:0.104,0.371,0.524 0|0:0.043:0.959,0.039,0.002 1|1:1.765:0.018,0.199,0.783 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.009,0.164,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.008,0.181,0.811 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.438:0.136,0.29,0.574 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.794:0.009,0.189,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.885:0.006,0.103,0.891 0|0:0:1,0,0 1|0:1.367:0.126,0.381,0.493 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0.013,0.165,0.822 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.917,0.08,0.003 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 1|1:2:0,0,1 0|0:0.057:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.31:0.148,0.394,0.458 0|0:0:1,0,0 0|0:0:1,0,0 +3 16643300 SNP-3.16641944. C A . PASS AR2=1;DR2=1;AF=0.288 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.941:0,0.059,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16643982 SNP-3.16642626. A G . PASS AR2=0.935;DR2=0.951;AF=0.539 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.901,0.093,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.82:0.008,0.165,0.827 1|1:1.453:0.079,0.389,0.532 0|0:0.247:0.768,0.218,0.015 1|1:2:0,0,1 0|0:0.533:0.55,0.367,0.083 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.354:0.68,0.287,0.034 0|0:0:1,0,0 1|1:1.666:0.036,0.263,0.702 1|0:0.979:0.126,0.77,0.104 1|1:1.825:0.008,0.158,0.833 1|0:0.739:0.399,0.464,0.137 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.001,0.087,0.911 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.123:0.113,0.651,0.236 1|1:2:0,0,1 1|1:1.885:0.004,0.108,0.888 1|1:1.95:0.001,0.049,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.002,0.072,0.925 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.533:0.016,0.435,0.549 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 1|1:1.981:0,0.019,0.981 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.076:0.349,0.227,0.425 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.808:0.268,0.656,0.076 0|0:0:1,0,0 0|0:0.095:0.907,0.092,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.397:0.005,0.593,0.402 0|0:0.341:0.667,0.326,0.008 0|0:0:1,0,0 1|1:1.785:0.008,0.199,0.793 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.96,0.038,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.611:0.005,0.379,0.616 0|0:0:1,0,0 0|0:0.275:0.769,0.188,0.043 1|1:1.902:0.001,0.096,0.903 1|1:2:0,0,1 1|1:1.726:0.002,0.27,0.728 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.052:0.949,0.05,0.001 1|1:1.984:0,0.016,0.984 1|1:1.68:0.014,0.291,0.694 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.606:0.504,0.385,0.111 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.058:0.944,0.055,0.001 1|1:2:0,0,1 1|0:1.039:0.233,0.495,0.272 1|1:2:0,0,1 1|1:1.748:0.021,0.209,0.77 1|1:1.895:0.003,0.1,0.897 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.981:0,0.018,0.982 1|0:0.915:0.193,0.7,0.107 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.514:0.032,0.423,0.545 1|0:1.18:0.098,0.623,0.278 0|1:1.433:0.066,0.435,0.499 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:1.807:0.009,0.175,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|1:0.963:0.309,0.418,0.272 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.017,0.203,0.781 1|1:2:0,0,1 1|1:1.849:0.006,0.138,0.855 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.746:0.376,0.503,0.122 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.838:0.013,0.136,0.851 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.093:0.915,0.077,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|1:1.949:0.001,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16646620 SNP-3.16645264. A G . PASS AR2=0.916;DR2=0.935;AF=0.206 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.035,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.099:0.153,0.594,0.252 1|1:2:0,0,1 0|0:0.404:0.619,0.359,0.023 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.196:0.825,0.155,0.021 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.682:0.416,0.487,0.097 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.115:0.889,0.106,0.005 0|0:0:1,0,0 0|1:0.664:0.358,0.62,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.37:0.126,0.377,0.497 0|1:0.866:0.22,0.694,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.502:0.556,0.385,0.059 0|0:0.095:0.907,0.091,0.002 1|1:2:0,0,1 0|0:0.268:0.751,0.231,0.018 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|0:1.122:0.196,0.486,0.318 0|0:0.365:0.669,0.296,0.035 0|1:0.321:0.705,0.269,0.026 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.716,0.26,0.024 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.173:0.192,0.443,0.365 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.714:0.376,0.535,0.089 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:1.198:0.161,0.481,0.359 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0 0|0:0.147:0.856,0.141,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.032,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.047,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.929,0.071,0 0|0:0.303:0.72,0.256,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.888,0.11,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.109:0.896,0.098,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.93,0.067,0.003 1|0:0.922:0.233,0.613,0.155 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.686:0.443,0.429,0.128 0|0:0:1,0,0 0|0:0.144:0.862,0.131,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.238:0.247,0.269,0.485 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.304:0.72,0.256,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.057:0.208,0.526,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.001 0|0:0.362:0.672,0.294,0.034 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.08:0.928,0.064,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.943,0.056,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.953,0.046,0.001 0|0:0:1,0,0 +3 16647194 SNP-3.16645838. A G . PASS AR2=0.999;DR2=0.999;AF=0.219 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.9:0.003,0.094,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.904:0.104,0.887,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16647665 SNP-3.16646309. C A . PASS AR2=1;DR2=1;AF=0.504 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.003,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.027:0.002,0.97,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16650006 SNP-3.16648650. A G . PASS AR2=0.944;DR2=0.959;AF=0.408 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.629:0.035,0.301,0.664 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.007,0.185,0.807 0|1:1:0.263,0.474,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.18:0.174,0.472,0.354 1|1:1.382:0.098,0.422,0.48 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.661:0.009,0.32,0.67 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.649:0.03,0.291,0.679 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.659:0.029,0.284,0.687 1|1:1.598:0.042,0.319,0.639 1|1:2:0,0,1 1|1:1.645:0.032,0.292,0.676 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.99:0,0.01,0.99 1|1:1.942:0.004,0.049,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.624:0.037,0.302,0.661 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.677:0.027,0.27,0.704 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.659:0.03,0.282,0.689 1|1:1.99:0,0.009,0.991 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.061:0.223,0.492,0.284 1|1:1.354:0.102,0.442,0.456 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.015,0.259,0.725 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.003,0.091,0.906 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.627:0.038,0.297,0.665 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.643:0.032,0.292,0.675 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.729:0.007,0.257,0.736 1|1:1.387:0.096,0.421,0.483 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.51:0.064,0.362,0.574 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 1|1:1.418:0.087,0.408,0.505 1|1:1.623:0.036,0.305,0.659 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.646:0.032,0.29,0.678 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.582:0.045,0.328,0.627 1|1:1.672:0.035,0.258,0.707 1|1:1.974:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16650432 SNP-3.16649076. A G . PASS AR2=0.996;DR2=0.997;AF=0.496 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.719,0.27,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.901:0.003,0.094,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.959 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.894:0.003,0.1,0.897 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.996:0.004,0.996,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.921:0.002,0.074,0.923 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16652819 SNP-3.16651463. A G . PASS AR2=0.812;DR2=0.867;AF=0.213 GT:DS:GP 0|0:0.333:0.718,0.232,0.05 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.8,0.188,0.012 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.356:0.108,0.429,0.464 0|1:0.802:0.359,0.479,0.161 1|0:1.106:0.216,0.461,0.322 0|0:0.411:0.664,0.261,0.075 1|1:2:0,0,1 1|1:1.351:0.121,0.407,0.472 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.248:0.061,0.63,0.309 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.943,0.054,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.468:0.587,0.358,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.488:0.571,0.369,0.06 0|0:0.51:0.557,0.377,0.066 0|0:0:1,0,0 0|0:0.465:0.589,0.357,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.464:0.59,0.356,0.054 1|1:2:0,0,1 0|0:0.483:0.576,0.366,0.059 0|0:0:1,0,0 0|0:0.488:0.572,0.369,0.06 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.497:0.567,0.369,0.064 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.269:0.75,0.232,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.516:0.533,0.419,0.048 0|0:0:1,0,0 0|0:0.192:0.819,0.17,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.819,0.164,0.016 1|0:0.618:0.463,0.457,0.08 0|0:0:1,0,0 1|0:0.53:0.501,0.469,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.863,0.133,0.004 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.376:0.658,0.309,0.034 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.675:0.525,0.276,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.281:0.739,0.24,0.02 0|0:0.476:0.563,0.398,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.638,0.35,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.488:0.572,0.369,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.583:0.5,0.416,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.723,0.25,0.026 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.835:0.402,0.361,0.237 0|1:1.135:0.204,0.458,0.339 0|0:0.672:0.444,0.44,0.116 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.447:0.604,0.346,0.051 0|0:0:1,0,0 1|0:0.488:0.572,0.369,0.06 0|0:0.5:0.562,0.375,0.063 1|1:2:0,0,1 0|0:0.11:0.896,0.099,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.873,0.12,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.325:0.111,0.454,0.435 0|0:0:1,0,0 0|0:0.194:0.815,0.176,0.009 1|1:2:0,0,1 0|0:0.347:0.677,0.299,0.024 0|0:0.283:0.725,0.267,0.008 1|0:0.563:0.516,0.406,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.947:0.282,0.489,0.229 1|0:0.866:0.266,0.602,0.132 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.488:0.572,0.369,0.06 0|0:0.151:0.859,0.132,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.471:0.588,0.352,0.06 0|0:0.409:0.644,0.304,0.052 0|0:0.488:0.572,0.369,0.06 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.517:0.555,0.373,0.072 0|0:0:1,0,0 1|0:0.683:0.375,0.568,0.057 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.996:0.261,0.482,0.257 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.784:0.373,0.47,0.157 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.892,0.104,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.827,0.165,0.008 0|0:0:1,0,0 0|0:0.488:0.572,0.369,0.06 0|0:0:1,0,0 0|0:0.106:0.904,0.085,0.011 0|0:0:1,0,0 0|0:0:1,0,0 +3 16654501 SNP-3.16653145. C A . PASS AR2=0.958;DR2=0.969;AF=0.426 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.707:0.029,0.234,0.737 1|1:1.67:0.045,0.241,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.017,0.245,0.737 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.56:0.029,0.381,0.59 1|1:1.985:0,0.015,0.985 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.011,0.266,0.723 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.007,0.169,0.824 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.608:0.045,0.303,0.652 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.756:0.015,0.214,0.771 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.642:0.031,0.296,0.673 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.541:0.471,0.517,0.012 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.757:0.011,0.221,0.768 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.463:0.038,0.46,0.501 1|1:2:0,0,1 1|0:1.553:0.064,0.319,0.617 1|1:2:0,0,1 1|1:1.87:0.004,0.122,0.874 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.761:0.015,0.208,0.777 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.721:0.016,0.247,0.737 0|0:0.711:0.567,0.155,0.278 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.673:0.027,0.273,0.7 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.675:0.013,0.299,0.688 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.739:0.018,0.224,0.758 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.794:0.012,0.182,0.806 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.005,0.102,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.004,0.07,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.837:0.009,0.144,0.846 0|0:0:1,0,0 1|1:1.835:0.006,0.154,0.84 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.951:0,0.049,0.951 1|1:2:0,0,1 1|1:1.908:0.006,0.08,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.319:0.119,0.443,0.438 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.035,0.277,0.688 0|0:0:1,0,0 +3 16655352 SNP-3.16653996. C A . PASS AR2=1;DR2=1;AF=0.498 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16659023 SNP-3.16657667. A G . PASS AR2=0.976;DR2=0.976;AF=0.413 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.02:0.24,0.5,0.26 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.022:0.239,0.5,0.261 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.029:0.236,0.5,0.265 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.002:0,0.997,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.022:0.239,0.5,0.261 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.076:0.212,0.5,0.288 1|0:1.022:0.239,0.5,0.261 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.022:0.239,0.5,0.261 1|0:1.022:0.239,0.5,0.261 0|0:0:1,0,0 0|1:1.022:0.239,0.5,0.261 1|1:1.022:0.239,0.5,0.261 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 +3 16659994 SNP-3.16658638. A G . PASS AR2=0.999;DR2=0.999;AF=0.327 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.219:0.791,0.199,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16661316 SNP-3.16659960. A G . PASS AR2=0.99;DR2=0.993;AF=0.468 GT:DS:GP 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.016,0.122,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.578:0.502,0.418,0.08 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.332:0.25,0.167,0.583 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.056:0.944,0.056,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.006,0.136,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.002,0.06,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16662852 SNP-3.16661496. A G . PASS AR2=0.998;DR2=0.998;AF=0.331 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.308:0.085,0.522,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16668298 SNP-3.16666942. A G . PASS AR2=0.988;DR2=0.989;AF=0.516 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.821:0.009,0.162,0.829 1|1:2:0,0,1 1|1:1.83:0.009,0.152,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.008,0.259,0.733 1|1:1.869:0.007,0.118,0.875 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.824:0.01,0.156,0.834 1|1:2:0,0,1 1|1:1.919:0.004,0.073,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.781:0.017,0.184,0.799 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.007,0.148,0.845 1|1:1.82:0.01,0.16,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.004,0.056,0.941 1|1:2:0,0,1 1|1:1.902:0,0.097,0.902 1|1:2:0,0,1 1|1:1.954:0,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.012,0.118,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.829:0.01,0.151,0.839 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.01,0.157,0.833 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.817:0.01,0.163,0.827 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16670653 SNP-3.16669297. C A . PASS AR2=1;DR2=1;AF=0.428 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16671466 SNP-3.16670110. C A . PASS AR2=0.998;DR2=0.998;AF=0.493 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.003,0.126,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.083:0.919,0.079,0.002 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16671695 SNP-3.16670339. A G . PASS AR2=0.983;DR2=0.985;AF=0.5 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.805:0.002,0.19,0.808 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:1.905:0.001,0.093,0.906 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.882:0.004,0.111,0.886 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.003,0.108,0.888 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.883:0.003,0.11,0.886 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.873:0.004,0.118,0.878 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.841:0.008,0.144,0.849 1|1:1.873:0.004,0.118,0.878 1|1:1.853:0.007,0.134,0.86 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.005,0.121,0.875 1|1:1.881:0.004,0.112,0.884 1|1:1.87:0.004,0.121,0.874 1|1:1.882:0.004,0.111,0.886 1|1:1.873:0.004,0.118,0.878 0|1:1:0,1,0 1|1:1.894:0.003,0.1,0.897 1|1:1.828:0.007,0.157,0.836 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.001,0.075,0.924 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.218:0.782,0.217,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.242:0.044,0.67,0.286 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.869:0.004,0.122,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.005,0.084,0.911 1|1:1.857:0.005,0.133,0.862 1|1:1.842:0.006,0.146,0.848 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:1.868:0.002,0.129,0.87 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.902:0.003,0.093,0.904 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.838:0.008,0.146,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.853:0.006,0.134,0.86 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 +3 16679391 SNP-3.16678035. C A . PASS AR2=1;DR2=1;AF=0.459 GT:DS:GP 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16682908 SNP-3.16681552. A G . PASS AR2=0.851;DR2=0.865;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.606:0.041,0.312,0.647 1|1:1.556:0.042,0.359,0.599 0|0:0:1,0,0 0|1:1.259:0.078,0.586,0.337 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.514:0.055,0.375,0.569 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.716:0.024,0.236,0.74 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.722:0.024,0.23,0.746 0|0:0:1,0,0 1|1:1.673:0.031,0.265,0.704 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.038,0.329,0.633 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.142:0.186,0.487,0.328 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.299:0.129,0.443,0.428 1|1:2:0,0,1 0|1:1.126:0.191,0.493,0.316 1|1:2:0,0,1 1|0:1.122:0.194,0.49,0.316 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.213:0.155,0.477,0.368 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:0.993:0.243,0.522,0.236 0|0:1.104:0.201,0.495,0.304 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.136:0.187,0.489,0.323 1|0:1.108:0.202,0.487,0.311 0|0:0:1,0,0 1|0:0.967:0.274,0.485,0.241 0|1:1.108:0.201,0.491,0.308 0|1:1.138:0.181,0.5,0.319 0|1:0.959:0.28,0.48,0.239 0|1:1.017:0.268,0.447,0.285 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.1:0.204,0.493,0.304 1|1:2:0,0,1 1|1:1.108:0.2,0.491,0.309 0|0:0:1,0,0 0|1:1.037:0.248,0.467,0.285 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.473:0.049,0.43,0.521 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.108:0.2,0.491,0.309 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.084:0.209,0.498,0.293 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.014:0.248,0.491,0.261 0|0:0:1,0,0 1|0:1.096:0.201,0.503,0.296 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.137:0.188,0.487,0.325 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.037:0.235,0.494,0.272 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.768:0.02,0.192,0.788 1|1:2:0,0,1 1|1:1.108:0.2,0.491,0.309 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.018:0.236,0.509,0.255 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.014:0.248,0.491,0.261 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.356:0.052,0.54,0.408 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.169:0.176,0.479,0.345 0|1:1:0,1,0 0|1:0.918:0.287,0.509,0.204 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.817:0.374,0.436,0.19 1|1:1.688:0.027,0.259,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.226:0.166,0.442,0.392 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.824:0.369,0.438,0.193 0|1:1.004:0.239,0.517,0.244 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.722:0.024,0.23,0.746 1|1:1.695:0.027,0.25,0.722 1|1:1.695:0.027,0.25,0.722 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.174:0.174,0.477,0.348 0|1:1.169:0.176,0.479,0.345 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.132:0.189,0.489,0.322 1|0:1.108:0.2,0.491,0.309 1|1:1.159:0.179,0.483,0.338 1|1:1.181:0.171,0.477,0.352 0|1:1.169:0.176,0.479,0.345 1|1:1.142:0.186,0.485,0.329 0|1:1.12:0.195,0.49,0.315 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.293:0.132,0.444,0.424 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.014:0.248,0.491,0.261 1|1:1.721:0.024,0.231,0.745 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.064:0.23,0.476,0.294 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16685894 SNP-3.16684538. A G . PASS AR2=0.999;DR2=0.999;AF=0.334 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.007,0.199,0.795 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16685989 SNP-3.16684633. A G . PASS AR2=0.845;DR2=0.877;AF=0.313 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|0:1.127:0.19,0.492,0.317 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.101:0.201,0.498,0.302 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.043:0.23,0.498,0.273 0|1:1.174:0.173,0.48,0.347 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.269:0.144,0.444,0.413 0|1:1.043:0.23,0.498,0.273 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.021,0.237,0.742 1|1:2:0,0,1 1|1:1.635:0.034,0.298,0.669 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.047,0.327,0.627 1|1:1.599:0.041,0.319,0.64 0|1:1.576:0.035,0.354,0.611 1|1:2:0,0,1 0|1:0.548:0.51,0.433,0.058 0|1:1.045:0.002,0.951,0.047 0|0:0:1,0,0 1|1:1.635:0.042,0.281,0.677 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.667:0.027,0.278,0.694 1|1:1.573:0.045,0.337,0.618 1|0:1.076:0.124,0.677,0.2 1|0:0.533:0.479,0.51,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.258:0.095,0.552,0.353 1|0:1.556:0.054,0.337,0.609 1|1:1.655:0.034,0.278,0.688 1|1:2:0,0,1 1|1:1.732:0.024,0.219,0.756 1|1:1.627:0.035,0.303,0.662 1|1:1.481:0.076,0.367,0.557 1|1:1.641:0.032,0.295,0.673 1|1:1.72:0.022,0.236,0.742 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.588:0.052,0.308,0.64 1|1:1.655:0.028,0.289,0.683 1|1:1.571:0.049,0.332,0.62 0|0:0.681:0.415,0.489,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.022,0.236,0.742 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.75:0.016,0.217,0.766 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.916,0.084,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.573:0.048,0.33,0.622 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|1:1.045:0.229,0.498,0.273 1|1:1.043:0.23,0.498,0.273 0|0:0:1,0,0 0|0:0.399:0.662,0.276,0.062 0|1:1.043:0.23,0.498,0.273 1|0:1.117:0.192,0.5,0.309 1|1:1.146:0.177,0.501,0.322 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.726:0.502,0.271,0.227 1|1:2:0,0,1 1|1:1.658:0.03,0.282,0.688 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.667:0.029,0.274,0.697 0|0:0:1,0,0 1|0:1.585:0.047,0.322,0.632 0|0:0:1,0,0 0|0:0.506:0.549,0.397,0.055 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.114:0.196,0.495,0.309 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.045:0.265,0.426,0.309 0|0:0.606:0.556,0.282,0.162 1|1:2:0,0,1 1|1:1.712:0.026,0.235,0.739 1|1:1.624:0.036,0.305,0.66 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.043:0.23,0.498,0.273 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.058:0.222,0.498,0.28 0|1:1.058:0.222,0.498,0.28 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.043:0.23,0.498,0.273 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.367:0.143,0.347,0.51 0|0:0.383:0.662,0.293,0.045 1|1:1.581:0.047,0.324,0.628 0|0:0:1,0,0 0|0:0.205:0.829,0.137,0.034 0|0:0.383:0.662,0.293,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.42:0.63,0.321,0.05 0|0:0.383:0.662,0.293,0.045 1|1:2:0,0,1 1|1:1.471:0.073,0.383,0.544 1|1:2:0,0,1 0|0:0.445:0.61,0.335,0.055 0|0:0.333:0.715,0.236,0.049 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.346:0.105,0.444,0.451 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.82:0.014,0.152,0.834 +3 16688049 SNP-3.16686693. C A . PASS AR2=0.963;DR2=0.976;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.505:0.044,0.406,0.55 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.082:0.214,0.49,0.296 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.117:0.017,0.85,0.133 1|1:2:0,0,1 1|1:1.606:0.059,0.277,0.664 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.127:0.873,0.127,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.384:0.7,0.216,0.084 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0.012,0.169,0.819 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.672:0.073,0.182,0.745 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.92:0.387,0.305,0.308 0|0:0.501:0.499,0.501,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.76:0.452,0.337,0.211 0|0:0:1,0,0 +3 16688126 SNP-3.16686770. C A . PASS AR2=0.998;DR2=0.999;AF=0.477 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.426:0.627,0.321,0.052 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16692659 SNP-3.16691304. C A . PASS AR2=0.992;DR2=0.993;AF=0.428 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.118:0.882,0.118,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.479:0.054,0.413,0.533 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.915:0.003,0.08,0.917 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.868:0.003,0.126,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.005,0.105,0.89 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.003,0.153,0.844 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.026:0.288,0.399,0.313 0|0:0:1,0,0 +3 16694934 SNP-3.16693579. A G . PASS AR2=0.996;DR2=0.996;AF=0.211 GT:DS:GP 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.003:0.015,0.966,0.018 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0,0.063,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.103:0.898,0.101,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16705256 SNP-3.16703901. A G . 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C A . 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C A . 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C A . PASS AR2=0.998;DR2=0.998;AF=0.359 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.09:0.912,0.087,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.896,0.099,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.076,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16709942 SNP-3.16708587. C A . PASS AR2=0.999;DR2=0.999;AF=0.477 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.063,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.934,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.064:0.936,0.064,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16711077 SNP-3.16709722. A G . PASS AR2=0.948;DR2=0.963;AF=0.28 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.485:0.066,0.382,0.552 1|1:1.495:0.064,0.377,0.559 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.493:0.064,0.378,0.558 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.486:0.066,0.382,0.552 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.49:0.065,0.38,0.555 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.484:0.067,0.383,0.55 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 1|1:1.819:0.017,0.146,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.586:0.045,0.324,0.631 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.896,0.102,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.73:0.01,0.25,0.74 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.607:0.049,0.294,0.656 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.485:0.066,0.382,0.551 1|1:1.485:0.066,0.382,0.552 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.498:0.063,0.376,0.561 1|0:1:0,1,0 1|1:1.521:0.057,0.364,0.578 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.323:0.106,0.465,0.429 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.002,0.062,0.936 1|1:1.808:0.02,0.151,0.828 1|1:1.945:0.002,0.051,0.947 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.039,0.286,0.675 1|1:2:0,0,1 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.58:0.043,0.333,0.623 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16711383 SNP-3.16710028. C A . PASS AR2=0.999;DR2=0.999;AF=0.481 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.966,0.033,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0.106:0.895,0.103,0.001 0|0:0:1,0,0 0|0:0.088:0.913,0.086,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16712609 SNP-3.16711254. A G . PASS AR2=0.928;DR2=0.94;AF=0.239 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.873:0.316,0.496,0.189 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.765,0.227,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.531:0.613,0.244,0.143 0|0:0:1,0,0 1|0:1.23:0.138,0.495,0.368 1|0:1.147:0.184,0.486,0.33 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.089:0.211,0.489,0.3 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.79:0.031,0.147,0.821 1|0:1.124:0.195,0.486,0.319 1|1:2:0,0,1 0|1:1.216:0.15,0.484,0.366 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|0:0.657:0.425,0.493,0.082 0|0:0.333:0.68,0.307,0.013 1|0:0.656:0.375,0.593,0.031 0|0:0.022:0.978,0.022,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.985:0.213,0.59,0.198 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.178:0.824,0.174,0.002 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.841,0.151,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.296:0.724,0.255,0.02 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.829:0.383,0.405,0.212 1|0:0.534:0.536,0.394,0.07 1|1:1.21:0.154,0.483,0.364 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.934,0.061,0.004 0|0:0:1,0,0 0|1:1.231:0.154,0.46,0.385 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.875,0.121,0.004 0|0:0.163:0.849,0.14,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.735,0.242,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.184:0.161,0.493,0.346 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.13,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.995:0.284,0.438,0.278 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.987,0.013,0 1|1:2:0,0,1 0|0:0.012:0.989,0.011,0 1|1:1.332:0.128,0.413,0.46 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.002,0.036,0.963 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.675:0.032,0.261,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.874,0.124,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16713722 SNP-3.16712367. A G . PASS AR2=0.977;DR2=0.982;AF=0.203 GT:DS:GP 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.639:0.434,0.493,0.073 0|0:0.219:0.786,0.208,0.006 0|0:0.197:0.808,0.188,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.49:0.57,0.371,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.001 0|0:0.065:0.936,0.062,0.001 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.898,0.101,0.001 0|0:0.068:0.934,0.065,0.001 0|0:0.127:0.875,0.123,0.002 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.233:0.791,0.185,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.094:0.908,0.091,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.331:0.681,0.306,0.013 1|1:1.937:0,0.063,0.937 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.618:0.451,0.479,0.07 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16713855 SNP-3.16712500. C A . PASS AR2=0.997;DR2=0.998;AF=0.472 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0.26:0.747,0.246,0.007 0|0:0:1,0,0 0|0:0.122:0.88,0.117,0.002 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.9,0.099,0.001 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16713877 SNP-3.16712522. A G . PASS AR2=0.98;DR2=0.985;AF=0.34 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0,0.046,0.953 1|1:1.577:0.017,0.389,0.594 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.114:0.894,0.098,0.008 1|1:1.693:0.01,0.288,0.703 1|0:1.358:0.101,0.439,0.459 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.001,0.07,0.928 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 0|0:0:1,0,0 1|1:1.845:0.012,0.13,0.857 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.889:0.001,0.109,0.89 1|1:1.919:0.002,0.077,0.921 1|1:1.749:0.012,0.226,0.761 1|1:1.915:0.002,0.082,0.917 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.788:0.213,0.785,0.001 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.996,0.004,0 1|1:1.988:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.762,0.238,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.581:0.056,0.307,0.637 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.879:0.002,0.117,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.967,0.032,0.001 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.634:0.031,0.305,0.665 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 +3 16717631 SNP-3.16716276. C A . PASS AR2=0.995;DR2=0.995;AF=0.356 GT:DS:GP 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.184:0.825,0.166,0.009 1|1:2:0,0,1 0|0:0.12:0.885,0.111,0.004 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.738,0.261,0.001 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.924,0.073,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.092:0.909,0.091,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.203:0.797,0.203,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16718155 SNP-3.16716800. A G . PASS AR2=0.98;DR2=0.984;AF=0.281 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.05:0.95,0.049,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0.242:0.764,0.23,0.006 0|0:0.083:0.92,0.078,0.002 1|0:0.531:0.483,0.503,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.752,0.212,0.037 0|0:0.042:0.958,0.041,0.001 0|0:0.091:0.913,0.084,0.003 0|0:0:1,0,0 0|0:0.171:0.837,0.155,0.008 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0.001 0|0:0.108:0.894,0.104,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 0|0:0.258:0.764,0.215,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0.064:0.938,0.06,0.002 0|0:0.079:0.923,0.076,0.002 0|1:1:0,1,0 0|0:0.081:0.92,0.078,0.001 0|0:0.025:0.975,0.025,0 0|0:0.044:0.957,0.041,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.363:0.021,0.596,0.383 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0.128:0.876,0.121,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.064,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16719368 SNP-3.16718013. C A . PASS AR2=1;DR2=1;AF=0.463 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16724730 SNP-3.16723375. A G . PASS AR2=0.906;DR2=0.91;AF=0.423 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.918:0.292,0.497,0.21 1|0:1.01:0.24,0.511,0.25 0|0:0.868:0.319,0.494,0.187 0|1:1.027:0.213,0.548,0.24 0|1:0.925:0.287,0.501,0.212 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:0.863:0.321,0.494,0.185 1|0:0.844:0.336,0.485,0.18 0|0:0.815:0.352,0.481,0.167 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|1:0.803:0.359,0.478,0.163 0|0:0:1,0,0 0|1:0.857:0.329,0.485,0.186 1|0:0.853:0.33,0.487,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.859:0.327,0.486,0.186 0|1:0.865:0.321,0.492,0.187 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.9:0.003,0.093,0.903 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.046:0.219,0.516,0.265 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0.883:0.352,0.413,0.235 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.579:0.013,0.395,0.592 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.124:0.876,0.124,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.127:0.23,0.413,0.357 0|0:0:1,0,0 0|0:0.804:0.359,0.478,0.163 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|1:0.903:0.309,0.479,0.212 0|0:0.87:0.322,0.486,0.192 1|0:0.804:0.359,0.478,0.163 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.803:0.359,0.478,0.163 0|0:0.001:0.999,0.001,0 0|1:0.88:0.316,0.488,0.196 0|1:0.805:0.358,0.478,0.163 1|0:0.891:0.306,0.498,0.196 1|0:0.97:0.257,0.517,0.226 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.875:0.315,0.495,0.19 1|1:2:0,0,1 1|0:0.966:0.263,0.508,0.229 1|0:0.819:0.349,0.482,0.169 0|0:0.866:0.32,0.495,0.186 0|1:0.927:0.289,0.494,0.216 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.028,0.121,0.852 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.853:0.329,0.489,0.182 0|0:0:1,0,0 1|0:0.863:0.322,0.492,0.186 0|1:0.817:0.351,0.481,0.168 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.816:0.351,0.481,0.168 1|0:0.853:0.328,0.491,0.181 0|0:0.816:0.351,0.481,0.167 1|0:0.802:0.36,0.478,0.162 0|0:0.804:0.359,0.478,0.163 0|0:0.804:0.359,0.478,0.163 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.804:0.359,0.478,0.163 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16726214 SNP-3.16724859. A G . PASS AR2=0.846;DR2=0.89;AF=0.244 GT:DS:GP 0|0:0.4:0.653,0.293,0.053 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.795,0.184,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.072:0.179,0.569,0.251 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.58:0.503,0.414,0.083 1|1:1.019:0.396,0.19,0.414 0|0:0.453:0.599,0.349,0.052 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.323:0.711,0.254,0.035 1|1:2:0,0,1 1|0:0.504:0.559,0.377,0.064 0|0:0.427:0.62,0.334,0.046 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.521:0.549,0.382,0.07 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.967:0.251,0.531,0.218 1|0:1.223:0.089,0.6,0.312 0|0:0.464:0.591,0.354,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.241:0.778,0.203,0.019 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.332:0.696,0.276,0.028 0|1:0.884:0.306,0.505,0.189 0|0:0.114:0.89,0.106,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0.171,0.659,0.171 0|0:0:1,0,0 0|0:0.302:0.721,0.256,0.023 1|1:2:0,0,1 0|0:0.358:0.674,0.295,0.032 1|1:2:0,0,1 1|1:1.599:0.047,0.306,0.647 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.416:0.048,0.487,0.464 0|0:0:1,0,0 0|0:0.31:0.719,0.252,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.351:0.68,0.288,0.031 0|0:0:1,0,0 0|0:0.295:0.727,0.251,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.367:0.663,0.306,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.319:0.134,0.413,0.453 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.322:0.704,0.27,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.644:0.394,0.567,0.038 0|0:0:1,0,0 0|0:0.31:0.758,0.173,0.068 0|0:0:1,0,0 0|0:0.102:0.899,0.1,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.389:0.646,0.32,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.429:0.616,0.339,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.254:0.166,0.414,0.42 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.229:0.802,0.167,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.731,0.248,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.4:0.65,0.3,0.05 0|0:0.435:0.607,0.351,0.042 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.267:0.76,0.214,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.483:0.57,0.377,0.053 0|0:0.021:0.98,0.02,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.01,0.164,0.825 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.764:0.337,0.563,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.605:0.031,0.334,0.636 1|0:0.637:0.451,0.461,0.088 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.279:0.747,0.226,0.027 0|0:0.522:0.534,0.41,0.056 0|0:0.324:0.702,0.272,0.026 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.771,0.215,0.014 0|0:0:1,0,0 0|0:0.124:0.887,0.102,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.858,0.128,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.571:0.512,0.406,0.083 0|1:0.644:0.461,0.434,0.105 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.452:0.6,0.347,0.053 0|1:1.067:0.149,0.634,0.216 0|0:0.533:0.538,0.391,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.865,0.124,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.731,0.248,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.013,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.294:0.728,0.251,0.022 +3 16726980 SNP-3.16725625. A G . PASS AR2=0.988;DR2=0.989;AF=0.226 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.879,0.117,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.748,0.25,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.166:0.839,0.156,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.076:0.926,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.892,0.105,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.764:0.002,0.232,0.766 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.933,0.062,0.005 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.145:0.861,0.133,0.006 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.794,0.199,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.814,0.18,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16733773 SNP-3.16732418. A G . PASS AR2=0.991;DR2=0.993;AF=0.523 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.846:0.002,0.15,0.848 1|1:1.957:0,0.042,0.957 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.007,0.101,0.892 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.959:0,0.04,0.959 0|1:1.605:0.001,0.393,0.606 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.001,0.082,0.916 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.007,0.138,0.855 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0,0.132,0.868 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.734:0.001,0.264,0.735 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.871:0.008,0.113,0.879 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0.001,0.082,0.917 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16736480 SNP-3.16735125. A G . PASS AR2=0.972;DR2=0.981;AF=0.462 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.144:0.179,0.498,0.323 1|1:2:0,0,1 0|1:1.33:0.127,0.416,0.457 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.619:0.029,0.324,0.647 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.564:0.049,0.337,0.614 1|1:1.949:0.001,0.05,0.95 1|0:1:0,1,0 0|0:0.154:0.846,0.154,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.222:0.219,0.341,0.44 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.82:0.008,0.164,0.828 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.01,0.18,0.81 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.008,0.164,0.828 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.964:0.002,0.033,0.966 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.615:0.03,0.325,0.645 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.814:0.009,0.169,0.822 0|0:0.312:0.757,0.174,0.069 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.559:0.028,0.385,0.587 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16737323 SNP-3.16735968. A G . PASS AR2=1;DR2=1;AF=0.418 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16738150 SNP-3.16736795. C A . PASS AR2=0.996;DR2=0.997;AF=0.439 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.864:0.006,0.125,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.003,0.093,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.929:0.071,0.929,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.282:0.043,0.632,0.325 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.924:0.002,0.072,0.926 1|0:0.968:0.064,0.905,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 16738536 SNP-3.16737181. A G . PASS AR2=0.997;DR2=0.997;AF=0.407 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.005,0.117,0.879 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.025,0.975 0|1:1:0,1,0 1|1:1.861:0.003,0.132,0.864 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.001,0.066,0.932 1|1:1.845:0.006,0.143,0.851 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.005,0.093,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16739478 SNP-3.16738123. C A . PASS AR2=0.985;DR2=0.988;AF=0.428 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.018,0.237,0.745 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.789:0.003,0.205,0.792 0|0:0:1,0,0 1|1:1.854:0.006,0.135,0.86 1|1:2:0,0,1 0|0:0.054:0.947,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.004,0.117,0.879 0|0:0.074:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.017,0.218,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.88,0.12,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.201:0.809,0.181,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.003,0.108,0.89 1|1:2:0,0,1 1|1:1.94:0,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.602:0.084,0.23,0.686 0|0:0:1,0,0 1|1:1.952:0.002,0.044,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.498:0.057,0.388,0.555 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:1.66:0.045,0.251,0.705 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.005,0.087,0.908 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.006,0.121,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16740928 SNP-3.16739573. A G . PASS AR2=0.941;DR2=0.952;AF=0.281 GT:DS:GP 0|0:0.334:0.704,0.258,0.038 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.45:0.589,0.373,0.039 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.611:0.509,0.37,0.121 1|1:1.789:0.009,0.193,0.798 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.768:0.368,0.495,0.137 1|1:1.822:0.006,0.166,0.828 1|1:2:0,0,1 1|1:1.715:0.021,0.243,0.736 1|1:2:0,0,1 1|1:1.83:0.008,0.155,0.838 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.865:0.005,0.124,0.87 1|1:2:0,0,1 1|1:1.576:0.014,0.396,0.59 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.29:0.72,0.269,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.856,0.137,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.159,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.063,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.884:0.318,0.48,0.202 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.825:0.334,0.508,0.159 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 1|1:1.491:0.06,0.388,0.552 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.255:0.76,0.226,0.015 0|0:0:1,0,0 0|0:0.119:0.886,0.11,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.919:0.353,0.376,0.271 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.444:0.644,0.268,0.088 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 1|1:1.941:0.001,0.056,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0.001,0.021,0.978 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.017,0.198,0.785 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.774:0.362,0.503,0.135 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.828:0.323,0.527,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.871,0.126,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.82:0.01,0.16,0.83 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.015,0.116,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0.18:0.828,0.164,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.002,0.063,0.936 1|1:2:0,0,1 1|1:1.912:0.003,0.081,0.916 1|1:1.947:0.001,0.05,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.385:0.661,0.293,0.046 0|0:0.286:0.742,0.229,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.842,0.149,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16741152 SNP-3.16739797. A G . PASS AR2=0.961;DR2=0.972;AF=0.475 GT:DS:GP 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.844:0.24,0.675,0.085 0|0:0:1,0,0 0|1:1.33:0.133,0.405,0.463 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 1|1:1.739:0.017,0.227,0.756 1|0:1.344:0.054,0.549,0.397 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.415:0.094,0.397,0.509 0|0:0.004:0.996,0.004,0 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.001,0.072,0.927 1|1:1.974:0,0.025,0.974 1|1:1.633:0.02,0.327,0.653 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.578:0.561,0.301,0.138 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0,0.05,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.003,0.085,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.002,0.093,0.905 1|1:2:0,0,1 1|0:1.022:0.102,0.775,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.998:0.256,0.491,0.253 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.375:0.657,0.31,0.032 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.326:0.131,0.412,0.457 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.837:0.303,0.557,0.14 0|0:0.171:0.833,0.162,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.658:0.024,0.294,0.682 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.308:0.696,0.301,0.003 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.845,0.154,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.012,0.175,0.813 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.515:0.561,0.362,0.076 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.383:0.722,0.173,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16741191 SNP-3.16739836. A G . PASS AR2=0.94;DR2=0.956;AF=0.366 GT:DS:GP 0|0:0.372:0.666,0.295,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.592:0.454,0.5,0.046 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.391:0.004,0.601,0.395 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.445:0.002,0.551,0.447 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.783,0.204,0.013 0|0:0:1,0,0 0|0:0.323:0.702,0.273,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.784,0.202,0.013 0|0:0.283:0.746,0.225,0.029 0|0:0:1,0,0 0|0:0.26:0.756,0.227,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.192:0.107,0.593,0.299 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.133:0.168,0.532,0.3 0|0:0.335:0.707,0.251,0.042 0|0:0:1,0,0 0|0:0.108:0.898,0.097,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.856:0.261,0.621,0.117 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.452:0.596,0.356,0.048 0|0:0.606:0.451,0.492,0.057 0|0:0:1,0,0 1|1:1.606:0.02,0.353,0.626 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.072:0.932,0.063,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.424:0.625,0.326,0.049 0|1:0.786:0.359,0.497,0.144 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.913:0.269,0.549,0.182 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.081:0.214,0.491,0.295 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.243:0.772,0.214,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.447:0.589,0.375,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0.66:0.457,0.426,0.117 1|1:2:0,0,1 0|1:1.498:0.001,0.5,0.499 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.614:0.487,0.413,0.1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.762,0.222,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.773,0.212,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.557:0.072,0.299,0.629 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.451:0.608,0.333,0.059 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.648:0.034,0.284,0.682 1|1:2:0,0,1 0|0:0:1,0,0 +3 16742631 SNP-3.16741276. A G . PASS AR2=0.951;DR2=0.96;AF=0.39 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.595:0.44,0.524,0.035 0|1:1:0,1,0 0|0:0.057:0.944,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.126:0.2,0.474,0.326 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 1|1:1.998:0,0.002,0.998 0|1:1.03:0.227,0.516,0.257 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.833:0.347,0.473,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.639:0.029,0.303,0.668 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.534:0.049,0.369,0.583 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.003,0.096,0.901 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.003,0.094,0.903 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 0|1:1.169:0.116,0.6,0.285 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.754:0.003,0.24,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.819:0.214,0.752,0.034 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.355:0.645,0.354,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.368:0.1,0.432,0.468 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.079:0.194,0.532,0.274 1|0:0.819:0.357,0.467,0.176 1|1:1.966:0.001,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|1:0.831:0.348,0.473,0.179 0|0:0:1,0,0 1|1:1.151:0.176,0.496,0.328 1|1:2:0,0,1 0|1:0.991:0.246,0.517,0.237 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.852,0.134,0.014 0|0:0.099:0.907,0.086,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.073:0.93,0.068,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.896,0.097,0.006 0|0:0.155:0.861,0.122,0.016 1|1:1.309:0.117,0.458,0.425 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.812,0.164,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.343:0.163,0.33,0.506 0|0:0:1,0,0 1|1:2:0,0,1 +3 16745344 SNP-3.16743989. A G . PASS AR2=0.988;DR2=0.991;AF=0.334 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.235:0.777,0.211,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.846,0.152,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.938:0.001,0.06,0.939 0|1:1:0,1,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|0:1.573:0.062,0.302,0.636 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.978:0,0.021,0.979 1|1:1.58:0.027,0.365,0.608 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.251:0.749,0.251,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0,0.067,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.004,0.112,0.884 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.004,0.114,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.319:0.709,0.264,0.028 0|0:0:1,0,0 1|1:2:0,0,1 +3 16746102 SNP-3.16744747. A G . PASS AR2=0.981;DR2=0.984;AF=0.377 GT:DS:GP 0|0:0.125:0.879,0.116,0.005 0|0:0:1,0,0 0|0:0.093:0.911,0.085,0.004 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0,0.082,0.918 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0.148:0.867,0.117,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 0|0:0.068:0.932,0.068,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.081:0.919,0.08,0.001 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.039:0.961,0.038,0.001 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0.08:0.922,0.076,0.002 0|0:0.078:0.924,0.075,0.001 0|0:0.071:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.11,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.882,0.118,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0.056:0.947,0.05,0.003 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.792,0.198,0.01 0|0:0.129:0.877,0.117,0.006 0|0:0.175:0.836,0.153,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.843,0.147,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.961,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.924,0.072,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.885,0.112,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.489:0.533,0.446,0.021 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.062:0.939,0.061,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.916,0.084,0.001 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.906,0.079,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.142:0.859,0.139,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16747632 SNP-3.16746277. A G . PASS AR2=0.969;DR2=0.976;AF=0.257 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.369:0.672,0.287,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.7,0.276,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.832,0.156,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.67:0.453,0.424,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.734:0.299,0.669,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0.001 0|0:0:1,0,0 0|0:0.334:0.695,0.276,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.222:0.789,0.199,0.012 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0.074:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.785,0.2,0.014 0|0:0.047:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0.099:0.904,0.093,0.003 0|1:1:0,1,0 0|0:0.154:0.853,0.14,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.088,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.753,0.234,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.239:0.779,0.202,0.019 0|0:0.172:0.836,0.157,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.918,0.076,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16749510 SNP-3.16748155. C A . PASS AR2=1;DR2=1;AF=0.451 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16749956 SNP-3.16748601. C A . PASS AR2=0.999;DR2=0.999;AF=0.46 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16753383 SNP-3.16752028. C A . PASS AR2=1;DR2=1;AF=0.457 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16754512 SNP-3.16753157. A G . PASS AR2=0.995;DR2=0.996;AF=0.341 GT:DS:GP 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.865:0.004,0.127,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.672,0.317,0.012 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.95:0.079,0.891,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.875:0.004,0.118,0.879 1|1:2:0,0,1 0|0:0.06:0.942,0.057,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.916,0.081,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16757648 SNP-3.16756293. A G . PASS AR2=0.969;DR2=0.975;AF=0.237 GT:DS:GP 0|0:0.199:0.812,0.177,0.011 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.066,0 0|0:0:1,0,0 0|0:0.147:0.862,0.13,0.008 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.212:0.8,0.187,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.436:0.611,0.341,0.048 0|0:0:1,0,0 0|0:0.208:0.805,0.183,0.012 0|0:0.108:0.896,0.101,0.003 0|0:0.165:0.841,0.153,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.177:0.832,0.159,0.009 0|0:0.184:0.825,0.166,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.168:0.835,0.162,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.212:0.797,0.194,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.334:0.683,0.3,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.03:0.971,0.029,0.001 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.94,0.059,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.322:0.69,0.299,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.139,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.765,0.213,0.022 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0.18:0.823,0.173,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0.116:0.887,0.109,0.004 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.882,0.113,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.773,0.215,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16760451 SNP-3.16759096. A G . PASS AR2=0.947;DR2=0.965;AF=0.238 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.195:0.17,0.466,0.364 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.402:0.649,0.3,0.051 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.66,0.34,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.522:0.553,0.372,0.075 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.534:0.563,0.341,0.096 1|0:1:0,1,0 0|0:0.647:0.467,0.418,0.115 0|1:0.63:0.485,0.401,0.114 0|1:0.672:0.452,0.425,0.124 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.508:0.01,0.473,0.518 0|1:1:0,1,0 1|1:1.912:0.007,0.074,0.919 0|0:0:1,0,0 0|0:0.721:0.456,0.367,0.177 1|0:0.85:0.258,0.635,0.107 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.831:0.33,0.51,0.16 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.045:0.17,0.615,0.215 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.84,0.119,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.103,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16763096 SNP-3.16761741. A G . PASS AR2=0.955;DR2=0.966;AF=0.505 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.712:0.022,0.244,0.734 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.687:0.024,0.264,0.711 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:1.698:0.023,0.255,0.721 1|1:2:0,0,1 1|1:1.649:0.031,0.289,0.68 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.659:0.029,0.283,0.688 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.682:0.026,0.265,0.708 1|1:2:0,0,1 1|1:1.689:0.025,0.262,0.714 1|1:1.705:0.023,0.25,0.728 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.965 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.963:0.042,0.953,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.865:0.136,0.863,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.03,0.287,0.683 1|1:2:0,0,1 0|0:0.754:0.393,0.46,0.147 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.702:0.439,0.42,0.141 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.69:0.024,0.262,0.714 1|1:1.669:0.027,0.277,0.696 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:1.694:0.025,0.257,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.674:0.027,0.273,0.701 1|1:2:0,0,1 1|1:1.683:0.025,0.267,0.708 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.65:0.031,0.288,0.681 1|1:1.669:0.028,0.275,0.697 1|1:2:0,0,1 1|1:1.653:0.03,0.286,0.683 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.659:0.029,0.283,0.688 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.665:0.029,0.277,0.694 0|1:1.652:0.03,0.287,0.683 1|1:1.65:0.031,0.288,0.681 0|1:1.54:0.045,0.37,0.585 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.634:0.034,0.298,0.668 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16766719 SNP-3.16765364. A G . PASS AR2=0.99;DR2=0.991;AF=0.299 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.103:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.103,0.003 0|0:0.129:0.875,0.12,0.004 0|1:1:0,1,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.879,0.117,0.004 0|0:0.123:0.88,0.116,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.875,0.121,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.773,0.137,0.091 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.076,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 1|1:2:0,0,1 +3 16775485 SNP-3.16774358. A G . PASS AR2=1;DR2=1;AF=0.286 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16777112 SNP-3.16775985. A G . PASS AR2=0.948;DR2=0.963;AF=0.37 GT:DS:GP 0|0:0.542:0.496,0.466,0.038 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.196:0.814,0.176,0.01 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.334:0.69,0.285,0.025 0|0:0.38:0.658,0.304,0.038 0|0:0.079:0.923,0.075,0.002 0|0:0.501:0.538,0.423,0.039 1|0:1:0,1,0 0|0:0.39:0.675,0.261,0.065 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.262:0.758,0.221,0.02 0|0:0:1,0,0 0|0:0.105:0.898,0.1,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.131:0.878,0.112,0.01 0|0:0:1,0,0 0|0:0.117:0.887,0.109,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.612:0.481,0.425,0.093 0|0:0.448:0.595,0.363,0.042 0|1:1:0,1,0 0|1:0.915:0.208,0.669,0.123 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.476:0.573,0.378,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.437:0.602,0.358,0.039 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.1,0.004 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:0.966:0.183,0.668,0.149 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.281:0.737,0.246,0.017 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.691:0.447,0.414,0.139 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.474:0.589,0.348,0.063 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.386:0.652,0.311,0.038 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.313:0.718,0.251,0.031 0|0:0.271:0.744,0.242,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.768,0.212,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.105,0.003 0|1:1:0,1,0 0|0:0.147:0.863,0.127,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.276:0.743,0.238,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16777397 SNP-3.16776270. A G . PASS AR2=1;DR2=1;AF=0.292 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16777506 SNP-3.16776379. A G . PASS AR2=1;DR2=1;AF=0.276 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16777607 SNP-3.16776480. C A . PASS AR2=0.987;DR2=0.991;AF=0.432 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.515:0.535,0.416,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.89:0.119,0.872,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.324:0.683,0.31,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.469:0.577,0.378,0.045 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.992:0,0.008,0.992 1|1:1.893:0.003,0.1,0.896 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.935:0.065,0.935,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:1.952:0,0.047,0.953 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.001,0.147,0.852 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.133:0.879,0.109,0.012 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.314:0.741,0.204,0.055 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.875,0.122,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.961:0,0.038,0.962 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16779274 SNP-3.16778147. A G . PASS AR2=0.999;DR2=0.999;AF=0.29 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16779316 SNP-3.16778189. A G . PASS AR2=0.986;DR2=0.99;AF=0.231 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.014,0.154,0.832 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.396:0.056,0.491,0.452 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.532:0.052,0.363,0.584 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.684:0.025,0.266,0.709 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.814:0.011,0.165,0.824 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.553:0.046,0.356,0.598 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16779367 SNP-3.16778240. A G . PASS AR2=0.98;DR2=0.982;AF=0.296 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.049,0 0|0:0.101:0.902,0.095,0.003 0|0:0.069:0.933,0.066,0.002 0|0:0.092:0.91,0.088,0.002 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.863,0.133,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 0|1:1.119:0.015,0.851,0.134 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.902,0.097,0.001 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.065:0.935,0.064,0 1|1:1.962:0,0.037,0.962 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.873,0.124,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.122:0.881,0.117,0.002 0|0:0.271:0.74,0.25,0.011 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.745,0.245,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.919,0.079,0.002 0|0:0.073:0.93,0.068,0.003 1|1:2:0,0,1 0|0:0.143:0.861,0.135,0.004 0|0:0.076:0.925,0.074,0.001 0|0:0.089:0.914,0.084,0.002 0|0:0.088:0.914,0.084,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.911,0.087,0.002 0|0:0.072:0.929,0.07,0.001 1|1:2:0,0,1 0|0:0.01:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0,0.037,0.962 0|0:0.11:0.89,0.109,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.084,0.001 0|0:0.063:0.938,0.06,0.001 0|0:0.083:0.919,0.08,0.001 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:1.962:0,0.037,0.962 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.883,0.113,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16779761 SNP-3.16778634. A G . PASS AR2=0.997;DR2=0.997;AF=0.295 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.063:0.937,0.062,0 0|0:0.085:0.917,0.08,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16779862 SNP-3.16778735. C A . PASS AR2=1;DR2=1;AF=0.44 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.009,0.067,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16780004 SNP-3.16778877. A G . PASS AR2=0.998;DR2=0.998;AF=0.275 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.908,0.092,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.84,0.159,0.001 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.052:0.95,0.049,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16780112 SNP-3.16778985. A G . PASS AR2=0.999;DR2=0.999;AF=0.272 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.007,0.109,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16780429 SNP-3.16779302. A G . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16780471 SNP-3.16779344. C A . PASS AR2=1;DR2=1;AF=0.43 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 16780558 SNP-3.16779431. A G . PASS AR2=0.984;DR2=0.986;AF=0.293 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.688:0.345,0.622,0.033 0|0:0.113:0.89,0.107,0.003 0|1:0.792:0.221,0.766,0.013 1|1:2:0,0,1 0|0:0.095:0.906,0.093,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.062:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.869,0.126,0.005 0|0:0.031:0.975,0.018,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0.175:0.836,0.154,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.942,0.055,0.002 0|0:0.06:0.942,0.055,0.002 0|0:0.101:0.9,0.099,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.935,0.063,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.187:0.823,0.167,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|0:0.77:0.245,0.74,0.015 0|0:0.144:0.86,0.135,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.881,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.845,0.154,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.942,0.055,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 1|1:2:0,0,1 +3 16780639 SNP-3.16779512. A G . PASS AR2=1;DR2=1;AF=0.28 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16780671 SNP-3.16779544. C A . PASS AR2=1;DR2=1;AF=0.43 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16780741 SNP-3.16779614. A G . PASS AR2=0.874;DR2=0.897;AF=0.375 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.728:0.406,0.461,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.679:0.437,0.447,0.116 0|0:0.672:0.441,0.446,0.113 1|0:0.704:0.419,0.457,0.124 0|0:0.71:0.416,0.459,0.125 1|0:1:0,1,0 0|0:0.696:0.425,0.454,0.121 0|1:0.715:0.413,0.46,0.128 0|0:0.694:0.426,0.454,0.12 1|0:0.718:0.413,0.457,0.131 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.748:0.393,0.465,0.141 0|1:0.71:0.415,0.459,0.126 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.672:0.441,0.446,0.113 0|0:0:1,0,0 0|0:0.695:0.431,0.443,0.126 1|1:2:0,0,1 0|0:0.669:0.443,0.445,0.112 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.678:0.437,0.448,0.115 0|0:0.672:0.441,0.446,0.113 0|1:1:0,1,0 0|0:0.684:0.433,0.449,0.117 0|1:0.672:0.441,0.446,0.113 1|0:0.672:0.441,0.446,0.113 1|0:0.674:0.44,0.446,0.114 1|1:2:0,0,1 0|0:0.672:0.441,0.446,0.113 0|0:0.713:0.414,0.46,0.127 0|1:0.667:0.445,0.444,0.111 0|1:0.811:0.36,0.468,0.171 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.684:0.433,0.449,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.678:0.437,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.71:0.415,0.459,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.672:0.441,0.446,0.113 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.658:0.036,0.269,0.695 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.672:0.441,0.446,0.113 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.676:0.438,0.447,0.115 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.678:0.437,0.448,0.115 0|0:0:1,0,0 0|0:0.672:0.441,0.446,0.113 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.661:0.448,0.442,0.11 0|0:0.673:0.44,0.446,0.114 0|0:0.712:0.414,0.459,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.669:0.443,0.444,0.112 0|1:0.676:0.438,0.447,0.115 0|1:0.695:0.431,0.443,0.126 0|0:0:1,0,0 0|0:0.695:0.431,0.443,0.126 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.672:0.441,0.446,0.113 0|0:0:1,0,0 0|0:0.695:0.431,0.443,0.126 0|1:1:0,1,0 0|1:0.671:0.442,0.445,0.113 0|0:0.672:0.441,0.446,0.113 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.762:0.384,0.47,0.146 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.673:0.441,0.446,0.113 +3 16780915 SNP-3.16779788. C A . PASS AR2=0.996;DR2=0.997;AF=0.474 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.409:0.606,0.379,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.143:0.861,0.134,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16781002 SNP-3.16779875. A G . PASS AR2=1;DR2=1;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16781077 SNP-3.16779950. A G . PASS AR2=0.996;DR2=0.996;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.005,0.114,0.881 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.118:0.885,0.112,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.887,0.103,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.007,0.159,0.835 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16781257 SNP-3.16780130. A G . PASS AR2=1;DR2=1;AF=0.274 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16781605 SNP-3.16780478. A G . PASS AR2=1;DR2=1;AF=0.268 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16784936 SNP-3.16783809. C A . PASS AR2=0.984;DR2=0.988;AF=0.443 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.074:0.927,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.102:0.9,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.001 0|0:0.097:0.907,0.088,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.882,0.117,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.534:0.035,0.396,0.569 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.137:0.863,0.136,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.073:0.929,0.07,0.001 1|1:2:0,0,1 1|1:1.833:0.009,0.15,0.842 1|0:1:0,1,0 1|1:1.845:0.001,0.154,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 0|0:0.074:0.928,0.07,0.002 0|1:0.565:0.455,0.525,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.098:0.905,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.858,0.134,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.388:0.67,0.273,0.057 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16789370 SNP-3.16788243. C A . PASS AR2=0.99;DR2=0.991;AF=0.46 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.152:0.853,0.142,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.119:0.884,0.112,0.004 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.092:0.909,0.089,0.002 0|0:0.123:0.88,0.117,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.842,0.151,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.05:0.951,0.047,0.001 0|0:0.037:0.963,0.036,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.838,0.157,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.732:0.331,0.605,0.063 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.072:0.013,0.903,0.084 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.884,0.112,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.107:0.896,0.101,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.115,0.003 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.218:0.793,0.196,0.011 0|0:0.065:0.936,0.064,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 +3 16791091 SNP-3.16789964. C A . PASS AR2=0.974;DR2=0.982;AF=0.409 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.087:0.917,0.08,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.953,0.044,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.071,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.517:0.036,0.412,0.553 1|1:2:0,0,1 1|1:1.807:0.007,0.178,0.814 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.71:0.016,0.258,0.726 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.883:0.003,0.112,0.886 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.858:0.502,0.137,0.361 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.284:0.723,0.27,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.932,0.066,0.003 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0.118:0.887,0.108,0.005 1|1:2:0,0,1 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0.802:0.542,0.113,0.344 0|0:0.118:0.887,0.108,0.005 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.877,0.117,0.006 0|0:0:1,0,0 0|0:0.061:0.942,0.056,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.85,0.148,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16791407 SNP-3.16790280. C A . PASS AR2=0.999;DR2=0.999;AF=0.442 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.827,0.173,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.853,0.145,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16793197 SNP-3.16792070. A G . PASS AR2=0.918;DR2=0.939;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0.063:0.938,0.061,0.001 1|1:1.439:0.061,0.438,0.5 1|1:1.331:0.112,0.444,0.443 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.936,0.06,0.004 1|1:1.442:0.07,0.419,0.512 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.908,0.089,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.377:0.095,0.432,0.473 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.375:0.082,0.461,0.457 1|0:1.359:0.103,0.435,0.462 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.019,0 0|1:1.007:0.063,0.867,0.07 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.051:0.07,0.81,0.121 1|0:0.594:0.457,0.491,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.813,0.18,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.277:0.734,0.256,0.011 1|1:2:0,0,1 0|0:0.082:0.92,0.077,0.003 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.988:0.04,0.933,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.108:0.896,0.101,0.003 0|0:0.091:0.911,0.088,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0.09:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.929:0.163,0.744,0.092 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.902,0.097,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.532:0.059,0.349,0.591 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.524:0.05,0.375,0.574 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.934,0.063,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.582:0.441,0.537,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.901,0.097,0.002 1|0:1.374:0.083,0.46,0.457 1|1:1.66:0.036,0.267,0.696 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.614:0.04,0.307,0.654 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.754,0.224,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.399:0.083,0.434,0.482 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.013:0.274,0.439,0.287 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.705:0.029,0.237,0.734 1|1:2:0,0,1 1|1:1.578:0.039,0.344,0.617 1|1:1.663:0.031,0.276,0.693 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:1.588:0.047,0.317,0.635 1|1:1.486:0.057,0.399,0.543 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.612:0.039,0.311,0.651 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0.028:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.024,0.185,0.791 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16796885 SNP-3.16795758. A G . PASS AR2=0.987;DR2=0.989;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.051:0.95,0.05,0 0|0:0.006:0.994,0.006,0 0|0:0.083:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.099:0.91,0.081,0.009 0|1:1.333:0.024,0.62,0.356 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.437,0.558,0.004 0|0:0.189:0.812,0.188,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.92:0.001,0.078,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.735,0.254,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.971:0.116,0.797,0.087 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.037:0.064,0.834,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.944,0.052,0.004 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.002,0.076,0.923 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16798362 SNP-3.16797235. A G . PASS AR2=0.993;DR2=0.994;AF=0.285 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.067,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.406:0.616,0.361,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.014,0.21,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.001,0.069,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16801060 SNP-3.16799933. A G . PASS AR2=0.974;DR2=0.977;AF=0.301 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.002,0.061,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0.315:0.791,0.104,0.105 0|0:0.088:0.914,0.085,0.001 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0 1|1:1.851:0.007,0.134,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.005,0.143,0.852 0|1:1.07:0.055,0.82,0.125 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0.003,0.078,0.919 1|1:2:0,0,1 1|1:1.931:0.002,0.066,0.932 1|1:2:0,0,1 1|1:1.887:0.004,0.105,0.891 0|1:0.938:0.064,0.934,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.008,0.193,0.798 1|1:1.917:0.002,0.078,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.56:0.008,0.425,0.568 0|0:0.009:0.991,0.009,0 1|1:1.886:0.004,0.107,0.89 1|1:2:0,0,1 1|1:1.887:0.004,0.105,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.005,0.128,0.867 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.179:0.833,0.156,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.077,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.004,0.113,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.004,0.115,0.882 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.756,0.226,0.017 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.004,0.105,0.891 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.888:0.004,0.105,0.891 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.005,0.132,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.004,0.111,0.886 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.803,0.197,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.004,0.107,0.89 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:1.879:0.004,0.113,0.883 1|1:1.88:0.004,0.113,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.002,0.057,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16807398 SNP-3.16806271. C A . PASS AR2=0.982;DR2=0.987;AF=0.479 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.352:0.681,0.285,0.033 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.345:0.687,0.28,0.033 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.418:0.628,0.326,0.046 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.434:0.614,0.338,0.048 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.113:0.887,0.112,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.14:0.86,0.139,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.517:0.552,0.379,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.721,0.255,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.33:0.697,0.277,0.026 0|0:0.405:0.638,0.319,0.043 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 +3 16807958 SNP-3.16806831. A G . PASS AR2=0.997;DR2=0.998;AF=0.297 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.433:0.001,0.565,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.001,0.077,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16811339 SNP-3.16810212. A G . PASS AR2=1;DR2=1;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16817640 SNP-3.16816513. A G . PASS AR2=0.854;DR2=0.893;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.289:0.733,0.246,0.022 0|0:0.287:0.732,0.25,0.018 0|0:0:1,0,0 0|0:0.583:0.529,0.358,0.112 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.1:0.211,0.479,0.311 0|1:1.055:0.203,0.54,0.258 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.843:0.333,0.492,0.175 0|0:0.197:0.821,0.16,0.019 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.989:0.256,0.5,0.244 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.244:0.143,0.47,0.387 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.346:0.107,0.44,0.453 0|0:0.651:0.537,0.275,0.188 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.089:0.912,0.087,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.308:0.126,0.44,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.421:0.083,0.413,0.504 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.363:0.102,0.433,0.465 0|0:0:1,0,0 0|1:0.455:0.548,0.45,0.002 0|1:1.326:0.114,0.447,0.44 1|0:0.512:0.493,0.503,0.005 0|0:0.056:0.945,0.053,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.347:0.107,0.439,0.454 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.35:0.106,0.438,0.456 1|0:1.355:0.104,0.437,0.459 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.742,0.233,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.343:0.108,0.441,0.451 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.614:0.467,0.453,0.08 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.689:0.407,0.496,0.096 0|1:0.994:0.179,0.648,0.173 1|0:0.793:0.321,0.565,0.114 1|0:0.734:0.362,0.542,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.691,0.277,0.031 0|0:0.001:0.999,0.001,0 0|0:0.115:0.887,0.11,0.002 0|0:0.27:0.747,0.236,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.166:0.175,0.484,0.341 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.588:0.505,0.403,0.093 0|0:0.502:0.551,0.396,0.053 0|0:0.108:0.894,0.104,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.508:0.55,0.391,0.059 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.428:0.621,0.33,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.342:0.108,0.441,0.451 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.799:0.363,0.476,0.161 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.842:0.342,0.473,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.211:0.164,0.461,0.375 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.305:0.727,0.241,0.032 1|1:2:0,0,1 0|0:0.176:0.83,0.165,0.005 0|1:0.818:0.351,0.48,0.169 0|0:0:1,0,0 0|1:0.96:0.269,0.503,0.229 0|1:0.854:0.329,0.487,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.958,0.04,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.315:0.118,0.45,0.432 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.13:0.194,0.481,0.324 0|0:0:1,0,0 0|0:0.157:0.856,0.132,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.363:0.102,0.434,0.465 1|1:1.35:0.106,0.438,0.456 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.767:0.384,0.466,0.151 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.028:0.24,0.493,0.268 1|0:0.896:0.305,0.494,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.3:0.125,0.451,0.425 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 1|0:1.356:0.104,0.436,0.46 1|1:1.344:0.108,0.44,0.452 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16817724 SNP-3.16816597. A G . PASS AR2=0.928;DR2=0.942;AF=0.261 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.832:0.37,0.428,0.202 0|0:0.267:0.74,0.254,0.006 1|1:2:0,0,1 1|0:1.002:0.255,0.487,0.258 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.687:0.026,0.261,0.713 1|1:1.578:0.054,0.313,0.633 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.556:0.034,0.377,0.59 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.941,0.059,0 1|0:1.367:0.105,0.423,0.472 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.633:0.034,0.3,0.666 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.34:0.086,0.487,0.427 1|1:1.469:0.07,0.391,0.539 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0.182:0.826,0.165,0.008 0|0:0:1,0,0 0|0:0.161:0.845,0.148,0.007 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0.162:0.845,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.87,0.124,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0.179:0.829,0.163,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.839,0.154,0.007 0|0:0.135:0.871,0.124,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.836,0.157,0.008 1|1:1.746:0.018,0.218,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.895,0.099,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.823,0.17,0.007 0|0:0.208:0.803,0.187,0.01 0|0:0:1,0,0 0|0:0.119:0.886,0.11,0.005 0|0:0.149:0.857,0.136,0.006 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.837,0.155,0.008 0|0:0:1,0,0 0|0:0.109:0.895,0.1,0.004 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.79:0.001,0.208,0.791 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.184:0.17,0.477,0.353 1|1:2:0,0,1 1|1:1.629:0.035,0.301,0.664 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.173:0.834,0.16,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.002 1|1:1.448:0.088,0.376,0.536 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.581:0.079,0.262,0.66 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.79:0.013,0.185,0.802 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0.183:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.9,0.097,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.017,0.183,0.8 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.405:0.695,0.204,0.101 0|0:0.162:0.845,0.148,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.917,0.08,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.037,0.185,0.777 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16818214 SNP-3.16817087. C A . PASS AR2=0.992;DR2=0.995;AF=0.396 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.551:0.012,0.425,0.563 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.317:0.126,0.43,0.444 1|1:1.612:0.035,0.318,0.647 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0.001,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16820497 SNP-3.16819370. A G . PASS AR2=0.996;DR2=0.996;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.956,0.044,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.993:0.009,0.988,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.94:0.002,0.056,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.904,0.091,0.005 0|0:0:1,0,0 1|1:1.852:0.009,0.129,0.861 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0.001,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.014,0.081,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16820716 SNP-3.16819589. A G . PASS AR2=1;DR2=1;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16820765 SNP-3.16819638. C A . PASS AR2=0.944;DR2=0.959;AF=0.402 GT:DS:GP 1|1:2:0,0,1 1|0:0.677:0.427,0.47,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.891,0.103,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.729,0.245,0.026 1|0:1.101:0.198,0.504,0.299 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.001:0.253,0.494,0.254 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.787:0.366,0.481,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.585:0.501,0.413,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.475:0.586,0.353,0.061 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.515:0.556,0.374,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.974:0.222,0.582,0.196 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.961,0.037,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.538:0.532,0.398,0.07 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.503:0.555,0.388,0.057 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.894:0.001,0.105,0.895 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.747:0.399,0.455,0.146 0|1:0.55:0.504,0.443,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.446:0.015,0.525,0.46 1|1:1.382:0.056,0.505,0.439 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.363:0.069,0.5,0.431 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.666:0.464,0.405,0.131 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.089:0.914,0.082,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.183:0.164,0.489,0.347 1|1:1.29:0.129,0.452,0.419 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.565:0.516,0.404,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.786,0.196,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.374:0.202,0.222,0.576 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.909,0.087,0.004 +3 16822183 SNP-3.16821056. C A . PASS AR2=0.992;DR2=0.994;AF=0.395 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.661:0.025,0.289,0.686 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.008,0.156,0.836 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.886:0.003,0.107,0.889 1|0:1:0,1,0 1|1:1.73:0.001,0.269,0.731 0|0:0:1,0,0 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.004,0.128,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.83:0.006,0.158,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 1|1:1.369:0.046,0.539,0.415 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 16822258 SNP-3.16821131. C A . PASS AR2=0.993;DR2=0.995;AF=0.392 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.013,0.199,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.015,0.203,0.782 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.601:0.036,0.327,0.637 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.764:0.015,0.207,0.778 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.888:0,0.112,0.888 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.759:0.015,0.211,0.774 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16822481 SNP-3.16821354. A G . PASS AR2=0.891;DR2=0.917;AF=0.256 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.661:0.046,0.246,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.558:0.521,0.4,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.55:0.53,0.391,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.696:0.443,0.418,0.139 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.907,0.086,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.294:0.125,0.456,0.419 0|1:1.274:0.132,0.462,0.406 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.213:0.154,0.48,0.367 1|1:2:0,0,1 0|0:0.393:0.624,0.36,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.264:0.135,0.465,0.4 1|1:2:0,0,1 1|0:1.155:0.191,0.463,0.346 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.581:0.101,0.217,0.682 1|1:1.276:0.131,0.462,0.407 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.44:0.627,0.306,0.067 1|1:2:0,0,1 0|1:1.268:0.134,0.464,0.402 1|0:1.171:0.169,0.491,0.34 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.276:0.131,0.462,0.407 0|1:1.37:0.097,0.436,0.467 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.277:0.131,0.462,0.408 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.758,0.233,0.01 0|0:0:1,0,0 0|0:0.145:0.858,0.14,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.913,0.086,0 0|0:0.212:0.801,0.186,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.216:0.79,0.204,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.715,0.267,0.018 0|0:0.054:0.946,0.054,0 0|0:0.072:0.933,0.063,0.004 0|0:0.064:0.939,0.058,0.003 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.191:0.815,0.179,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.986:0.082,0.849,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.248:0.139,0.473,0.387 1|1:2:0,0,1 1|0:0.914:0.086,0.913,0 0|0:0.178:0.827,0.169,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.842,0.15,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.626:0.471,0.432,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.489:0.566,0.378,0.055 1|1:2:0,0,1 0|0:0.219:0.812,0.157,0.031 1|1:2:0,0,1 1|1:1.286:0.128,0.459,0.413 0|0:0.473:0.587,0.352,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.571:0.515,0.399,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.934,0.064,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.267:0.134,0.464,0.401 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.279:0.13,0.461,0.409 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.256:0.138,0.467,0.394 0|0:0:1,0,0 1|1:1.359:0.199,0.242,0.559 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.027,0.094,0.879 0|0:0:1,0,0 1|1:2:0,0,1 +3 16822667 SNP-3.16821540. A G . PASS AR2=0.993;DR2=0.994;AF=0.319 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.944:0.31,0.437,0.254 0|0:0.206:0.805,0.184,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.059:0.001,0.94,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.798:0.002,0.198,0.8 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.001,0.168,0.831 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16824914 SNP-3.16823787. C A . PASS AR2=0.972;DR2=0.977;AF=0.417 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.016,0.224,0.76 1|1:2:0,0,1 1|1:1.79:0.012,0.187,0.801 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.033:0.968,0.032,0 0|0:0.1:0.901,0.099,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.74,0.251,0.009 0|0:0:1,0,0 0|0:0.266:0.742,0.251,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.1:0.096,0.707,0.197 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.875:0.011,0.104,0.886 1|1:2:0,0,1 1|1:1.823:0.009,0.16,0.832 1|1:2:0,0,1 1|1:1.666:0.023,0.287,0.689 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.305:0.076,0.543,0.381 0|0:0:1,0,0 1|1:1.671:0.023,0.283,0.694 1|1:2:0,0,1 1|1:1.726:0.015,0.245,0.74 0|1:1.227:0.097,0.578,0.325 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.774:0.015,0.196,0.789 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:1.65:0.031,0.288,0.681 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0,0.051,0.949 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.94:0,0.06,0.94 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.005,0.139,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.021,0.254,0.725 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.832:0.006,0.156,0.838 1|1:2:0,0,1 1|1:1.909:0.001,0.09,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 1|1:1.989:0,0.011,0.989 1|1:1.971:0,0.029,0.971 1|1:1.962:0.001,0.037,0.962 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.842:0.008,0.143,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.406:0.054,0.487,0.46 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.001,0.078,0.92 1|1:1.762:0.016,0.206,0.778 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16826960 SNP-3.16825833. A G . PASS AR2=0.903;DR2=0.929;AF=0.37 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.633:0.462,0.444,0.095 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.428:0.618,0.337,0.046 1|1:2:0,0,1 0|0:0.332:0.687,0.293,0.019 0|0:0:1,0,0 0|0:0.349:0.678,0.295,0.027 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.486:0.578,0.358,0.064 0|0:0.487:0.58,0.353,0.067 0|0:0:1,0,0 1|1:1.198:0.162,0.478,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.683:0.389,0.539,0.072 0|0:0.421:0.617,0.345,0.038 0|0:0.584:0.484,0.448,0.068 0|0:0.37:0.663,0.304,0.033 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 0|1:1.827:0.008,0.157,0.835 1|1:1.886:0.004,0.107,0.89 1|1:1.896:0.003,0.098,0.899 1|1:1.871:0.004,0.12,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.008,0.112,0.88 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.004,0.117,0.879 1|1:1.877:0.005,0.113,0.882 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.007,0.142,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.004,0.118,0.878 1|1:1.554:0,0.446,0.554 0|0:0.899:0.409,0.283,0.308 0|0:0.107:0.901,0.092,0.008 1|1:1.888:0.004,0.104,0.892 1|1:1.807:0.018,0.157,0.825 1|1:2:0,0,1 1|1:1.88:0.004,0.112,0.884 1|1:1.884:0.004,0.109,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 1|1:1.875:0.004,0.117,0.879 1|1:2:0,0,1 1|1:1.802:0.011,0.176,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.726:0.424,0.427,0.15 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.784,0.215,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|0:0.698:0.449,0.404,0.147 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.606:0.48,0.435,0.086 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.146:0.186,0.482,0.332 1|0:1.091:0.208,0.494,0.298 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.449:0.607,0.337,0.056 0|0:0:1,0,0 0|0:0.444:0.607,0.341,0.052 0|0:0.592:0.502,0.404,0.094 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.881:0.004,0.112,0.885 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.55:0.535,0.38,0.085 1|1:2:0,0,1 1|0:1.26:0.145,0.451,0.404 0|0:0:1,0,0 0|0:0.182:0.829,0.159,0.011 1|1:1.874:0.004,0.119,0.877 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.862:0.005,0.128,0.867 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.406:0.641,0.313,0.047 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.059:0.207,0.527,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.211:0.159,0.471,0.37 1|1:2:0,0,1 1|1:1.302:0.129,0.439,0.431 1|0:1.331:0.12,0.429,0.451 1|1:2:0,0,1 1|1:1.856:0.005,0.133,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.004,0.116,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.816:0.014,0.155,0.831 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.77,0.182,0.048 0|0:0.003:0.997,0.003,0 1|1:1.482:0.082,0.355,0.563 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.893:0.004,0.099,0.897 +3 16827601 SNP-3.16826474. C A . PASS AR2=0.976;DR2=0.982;AF=0.408 GT:DS:GP 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.886:0.005,0.104,0.891 0|0:0:1,0,0 1|1:1.89:0.004,0.101,0.894 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.862:0.01,0.119,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.48:0.521,0.478,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.003,0.05,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.451:0.031,0.487,0.482 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.004,0.137,0.859 1|1:2:0,0,1 0|1:1.422:0.029,0.52,0.451 0|1:1.183:0.062,0.693,0.245 1|1:2:0,0,1 1|1:1.973:0.001,0.025,0.974 1|1:1.875:0.006,0.114,0.881 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:1.621:0.015,0.349,0.636 1|1:1.511:0.054,0.381,0.565 1|1:1.986:0,0.014,0.986 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.898:0.004,0.095,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 1|1:1.85:0.007,0.135,0.857 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0.001,0.079,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 0|1:1.297:0.115,0.473,0.412 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.102:0.902,0.095,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.849,0.14,0.012 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.569:0.02,0.392,0.588 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.871:0.005,0.119,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16830403 SNP-3.16829276. A G . PASS AR2=0.956;DR2=0.963;AF=0.297 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.009,0.146,0.845 1|1:2:0,0,1 1|1:1.661:0.03,0.279,0.691 0|0:0:1,0,0 1|1:1.771:0.013,0.203,0.784 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:1.593:0.04,0.328,0.633 1|1:1.905:0.003,0.09,0.908 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:1.932:0.001,0.065,0.933 1|1:1.751:0.016,0.217,0.767 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.561:0.049,0.34,0.61 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.702:0.024,0.25,0.726 1|1:2:0,0,1 1|1:1.815:0.01,0.165,0.825 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.86,0.133,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.267:0.75,0.234,0.017 0|1:0.842:0.363,0.432,0.205 0|0:0.2:0.811,0.179,0.01 0|0:0.112:0.892,0.104,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.155:0.852,0.141,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.885,0.109,0.005 0|0:0:1,0,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.869:0,0.131,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.143:0.862,0.132,0.006 0|0:0.159:0.848,0.146,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.835,0.158,0.007 1|1:0.84:0.364,0.432,0.204 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.705:0.026,0.243,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.854,0.139,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.008,0.147,0.844 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 1|1:1.9:0.003,0.095,0.903 1|1:1.647:0.032,0.288,0.68 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.675:0.034,0.257,0.709 0|0:0:1,0,0 0|0:0.037:0.964,0.034,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.011,0.158,0.831 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.62:0.02,0.341,0.64 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.048,0.951 1|1:2:0,0,1 1|1:1.878:0.004,0.114,0.882 1|1:2:0,0,1 0|0:0.158:0.849,0.144,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.852,0.141,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.856,0.138,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.111:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 +3 16833880 SNP-3.16832753. A G . PASS AR2=0.896;DR2=0.92;AF=0.391 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.008,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.094:0.906,0.093,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.678:0.437,0.447,0.115 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.638:0.464,0.435,0.102 1|0:1:0,1,0 1|0:0.68:0.436,0.448,0.116 0|1:1:0,1,0 0|0:0.678:0.437,0.448,0.115 0|0:0:1,0,0 1|0:0.718:0.413,0.456,0.131 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.68:0.436,0.448,0.116 0|0:0.675:0.439,0.446,0.114 0|1:0.68:0.436,0.448,0.116 1|0:0.68:0.436,0.448,0.116 0|0:0.673:0.44,0.446,0.114 0|0:0.675:0.439,0.446,0.114 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.68:0.436,0.448,0.116 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.677:0.438,0.447,0.115 1|0:0.706:0.421,0.451,0.127 0|0:0.617:0.484,0.416,0.101 1|0:1:0,1,0 1|0:0.675:0.439,0.447,0.114 1|0:1:0,1,0 0|0:0.68:0.436,0.448,0.116 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.623:0.477,0.422,0.101 1|0:1:0,1,0 1|0:0.565:0.52,0.396,0.085 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.654:0.4,0.546,0.054 0|0:0:1,0,0 1|0:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.241:0.77,0.219,0.011 0|0:0:1,0,0 0|0:0.283:0.733,0.251,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.676:0.439,0.447,0.115 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 0|0:0.17:0.836,0.158,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.628:0.469,0.433,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.675:0.44,0.446,0.114 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.151:0.854,0.141,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.676:0.439,0.447,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.676:0.439,0.447,0.115 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.683:0.434,0.449,0.117 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.681:0.435,0.448,0.116 0|0:0.68:0.436,0.448,0.116 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.889,0.107,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.885,0.091,0.024 0|0:0:1,0,0 0|0:0.68:0.436,0.448,0.116 +3 16834732 SNP-3.16833605. A G . PASS AR2=0.919;DR2=0.95;AF=0.509 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.4:0.09,0.419,0.491 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.394:0.093,0.42,0.487 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.399:0.091,0.42,0.49 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.736:0.334,0.596,0.07 0|1:1:0,1,0 1|1:1.4:0.09,0.419,0.491 0|1:1.395:0.092,0.421,0.487 1|1:2:0,0,1 1|1:1.4:0.09,0.419,0.491 1|1:1.389:0.094,0.423,0.483 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.401:0.091,0.417,0.492 1|1:1.312:0.123,0.442,0.435 0|1:1.39:0.094,0.422,0.484 1|1:1.403:0.09,0.417,0.493 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.386:0.095,0.424,0.481 1|1:2:0,0,1 1|1:1.319:0.12,0.441,0.439 1|1:1.399:0.091,0.42,0.49 1|1:1.366:0.108,0.418,0.474 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.838,0.162,0 0|0:0:1,0,0 0|0:0.226:0.775,0.225,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.164:0.836,0.164,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.405:0.089,0.417,0.494 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.388:0.094,0.424,0.482 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.434:0.081,0.405,0.514 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.001,0.092,0.906 0|1:1.402:0.09,0.419,0.491 1|0:1.4:0.091,0.419,0.49 0|1:1.401:0.09,0.419,0.491 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.4:0.09,0.419,0.491 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.4:0.09,0.419,0.491 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.401:0.09,0.419,0.491 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 +3 16834840 SNP-3.16833713. C A . PASS AR2=0.993;DR2=0.994;AF=0.403 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.589:0.041,0.329,0.63 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.149:0.064,0.723,0.213 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.364:0.088,0.46,0.452 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|1:1:0,1,0 1|1:1.875:0.006,0.114,0.881 1|0:1.064:0.016,0.905,0.08 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16838056 SNP-3.16836929. A G . PASS AR2=0.991;DR2=0.992;AF=0.529 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.004,0.149,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.001,0.102,0.897 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.892:0.002,0.105,0.894 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.979:0,0.021,0.979 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.578:0.422,0.578,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.9,0.1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.991:0.03,0.948,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.781:0.015,0.189,0.796 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0.001,0.034,0.965 1|1:2:0,0,1 1|1:1.802:0.006,0.187,0.807 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.895:0.003,0.098,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 1|1:1.902:0.003,0.092,0.905 1|1:1.952:0,0.047,0.953 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0,0.044,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.99:0,0.01,0.99 1|1:1.964:0,0.035,0.964 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16840375 SNP-3.16839248. C A . PASS AR2=0.978;DR2=0.983;AF=0.416 GT:DS:GP 1|1:1.875:0,0.125,0.875 0|0:0:1,0,0 0|0:0.174:0.834,0.158,0.008 0|0:0.358:0.669,0.303,0.027 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0.083:0.918,0.08,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.883,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|0:0.559:0.46,0.522,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0.001 1|1:2:0,0,1 1|1:1.474:0.155,0.216,0.629 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.005,0.097,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0,0.067,0.933 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0.503:0.51,0.478,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.033:0.967,0.032,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.863,0.131,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0,0.07,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.863,0.133,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.06:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.711:0.079,0.132,0.789 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.197:0.808,0.187,0.005 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 16841473 SNP-3.16840346. A G . PASS AR2=0.899;DR2=0.926;AF=0.298 GT:DS:GP 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|0:1.17:0.164,0.503,0.333 1|1:1.89:0.001,0.108,0.891 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.28:0.739,0.242,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.092:0.91,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.309:0.717,0.258,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.961,0.038,0.001 0|0:0.255:0.765,0.214,0.02 0|0:0.178:0.829,0.163,0.008 0|0:0:1,0,0 0|0:0.6:0.498,0.404,0.098 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.487:0.569,0.375,0.056 1|0:0.888:0.296,0.519,0.185 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:1.582:0.038,0.342,0.62 1|1:1.575:0.046,0.333,0.621 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.574:0.025,0.375,0.599 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.659:0.03,0.281,0.689 1|1:2:0,0,1 0|1:1.627:0.034,0.305,0.661 1|1:2:0,0,1 1|1:1.61:0.04,0.311,0.65 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.639:0.033,0.295,0.672 0|1:1.614:0.037,0.311,0.652 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.889:0.413,0.285,0.302 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.579:0.046,0.329,0.625 0|0:0:1,0,0 1|1:1.687:0.028,0.257,0.715 1|1:1.676:0.028,0.268,0.704 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.629:0.035,0.3,0.665 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.901:0.328,0.444,0.229 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.808,0.182,0.01 0|0:0:1,0,0 1|1:1.618:0.037,0.308,0.655 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.598:0.042,0.319,0.64 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.495:0.556,0.393,0.051 0|0:0.097:0.904,0.095,0.001 0|0:0:1,0,0 0|0:0.221:0.792,0.196,0.012 1|1:1.619:0.037,0.306,0.656 1|1:1.635:0.033,0.299,0.668 0|0:0:1,0,0 0|0:0.34:0.784,0.093,0.124 1|1:1.625:0.032,0.311,0.657 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.715,0.258,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.432:0.615,0.337,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.622:0.036,0.306,0.658 0|0:0:1,0,0 1|1:1.36:0.167,0.305,0.527 0|0:0:1,0,0 0|0:0.156:0.853,0.137,0.009 1|1:1.618:0.037,0.308,0.655 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.851,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.629:0.034,0.303,0.663 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0.161:0.846,0.148,0.007 0|0:0:1,0,0 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0.059:0.943,0.055,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.01,0.117,0.873 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.854:0.009,0.129,0.863 1|1:2:0,0,1 1|1:1.866:0.01,0.115,0.875 1|1:1.944:0.001,0.053,0.946 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.965:0.418,0.198,0.384 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.009,0.11,0.881 0|0:0:1,0,0 1|1:2:0,0,1 +3 16841580 SNP-3.16840453. C A . PASS AR2=0.989;DR2=0.992;AF=0.383 GT:DS:GP 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.889:0.111,0.889,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.793:0.027,0.154,0.819 1|1:2:0,0,1 1|1:1.57:0.064,0.302,0.634 1|1:2:0,0,1 0|1:1.517:0.053,0.377,0.57 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.701:0.011,0.277,0.712 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.004,0.245,0.751 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.645:0.022,0.311,0.667 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16842371 SNP-3.16841244. A G . PASS AR2=0.962;DR2=0.975;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.505:0.063,0.369,0.568 1|1:1.426:0.083,0.408,0.509 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.396:0.093,0.418,0.489 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.426:0.083,0.408,0.509 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.418:0.085,0.412,0.503 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.709,0.27,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.137:0.867,0.129,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.424:0.083,0.409,0.508 0|0:0:1,0,0 0|0:0.125:0.876,0.124,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|1:1:0,1,0 1|1:1.683:0.034,0.248,0.718 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.423:0.084,0.41,0.507 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.757:0.018,0.207,0.775 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0.016,0.165,0.819 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 +3 16842419 SNP-3.16841292. C A . PASS AR2=1;DR2=1;AF=0.397 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16842546 SNP-3.16841419. A G . PASS AR2=0.965;DR2=0.975;AF=0.267 GT:DS:GP 0|0:0:1,0,0 0|1:0.9:0.306,0.487,0.206 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.894:0.004,0.097,0.898 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.694:0.028,0.25,0.722 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.469:0.054,0.423,0.523 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.018,0.216,0.766 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.728:0.019,0.233,0.747 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.426:0.084,0.406,0.51 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0.046,0.315,0.64 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.532:0.043,0.381,0.576 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.617:0.038,0.306,0.655 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.514:0.065,0.357,0.578 1|1:2:0,0,1 1|1:1.571:0.047,0.335,0.618 1|1:1.594:0.043,0.319,0.638 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16842798 SNP-3.16841671. A G . PASS AR2=0.957;DR2=0.971;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.484:0.083,0.349,0.568 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.704:0.013,0.269,0.718 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.791:0.012,0.185,0.803 1|1:2:0,0,1 0|1:1.648:0.02,0.313,0.667 1|1:1.776:0.012,0.2,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.919:0.081,0.918,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.856:0.005,0.133,0.861 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.859:0.005,0.131,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.647:0.02,0.313,0.667 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.634:0.021,0.324,0.655 1|1:2:0,0,1 1|1:1.616:0.04,0.304,0.656 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.178:0.251,0.321,0.429 0|0:0:1,0,0 1|1:1.632:0.04,0.287,0.672 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.655:0.019,0.308,0.673 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.192:0.222,0.364,0.414 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.326:0.096,0.483,0.421 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.865:0.005,0.126,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.006,0.13,0.864 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.159:0.254,0.332,0.414 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16843300 SNP-3.16842173. A G . PASS AR2=0.96;DR2=0.968;AF=0.28 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.87,0.124,0.006 0|0:0.248:0.761,0.23,0.009 0|0:0:1,0,0 0|0:0.246:0.766,0.221,0.013 0|0:0.211:0.797,0.195,0.008 0|0:0:1,0,0 0|0:0.144:0.863,0.131,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.173:0.834,0.16,0.006 0|0:0.208:0.802,0.188,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 0|0:0.151:0.855,0.138,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.432:0.604,0.36,0.036 0|0:0:1,0,0 0|0:0.16:0.847,0.145,0.008 0|0:0.168:0.838,0.156,0.006 0|0:0.207:0.799,0.195,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.929:0.104,0.863,0.033 0|0:0:1,0,0 0|0:0.108:0.893,0.106,0.001 1|0:1:0,1,0 0|1:0.728:0.292,0.688,0.02 1|0:1:0,1,0 0|0:0.343:0.683,0.292,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.282:0.743,0.233,0.024 0|0:0:1,0,0 0|0:0.164:0.843,0.151,0.007 0|0:0:1,0,0 0|0:0.418:0.59,0.401,0.009 0|0:0.124:0.881,0.115,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.305:0.723,0.249,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.167:0.845,0.143,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.178:0.831,0.161,0.009 0|0:0.139:0.867,0.126,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.303:0.726,0.246,0.028 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.202:0.814,0.171,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.717,0.254,0.029 0|0:0.143:0.864,0.13,0.006 0|0:0.277:0.741,0.242,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.137:0.869,0.125,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.745,0.226,0.028 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.947,0.051,0.003 0|0:0:1,0,0 0|0:0:1,0,0 +3 16855971 SNP-3.16854844. A G . PASS AR2=0.991;DR2=0.993;AF=0.351 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.096:0.906,0.093,0.001 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.875,0.117,0.007 0|0:0.282:0.739,0.24,0.021 0|0:0.301:0.717,0.265,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.805,0.181,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|1:1:0,1,0 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.001,0.118,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.497:0.512,0.479,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16856289 SNP-3.16855162. A G . PASS AR2=0.999;DR2=0.999;AF=0.236 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.007:0.044,0.906,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16856475 SNP-3.16855348. C A . PASS AR2=0.996;DR2=0.997;AF=0.4 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.026:0.974,0.025,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.435:0.57,0.425,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.922,0.069,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16861320 SNP-3.16860193. C A . PASS AR2=0.986;DR2=0.99;AF=0.379 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0,0.048,0.952 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.947:0.053,0.947,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.271:0.024,0.682,0.295 1|0:1.432:0.017,0.534,0.449 0|1:1.268:0.024,0.684,0.292 1|1:1.662:0.028,0.282,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.004,0.183,0.813 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.642:0.018,0.323,0.66 1|1:1.877:0.005,0.113,0.882 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.277:0.018,0.686,0.296 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.5:0.023,0.454,0.523 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16861617 SNP-3.16860490. A G . PASS AR2=0.979;DR2=0.982;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0.054:0.948,0.05,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.796,0.198,0.006 0|0:0.054:0.948,0.05,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.156:0.845,0.154,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.892:0.002,0.104,0.894 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 1|1:2:0,0,1 0|0:0.088:0.913,0.085,0.002 0|0:0.144:0.861,0.133,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.883,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.9,0.099,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.928,0.07,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.872,0.123,0.005 0|0:0.128:0.876,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.873,0.119,0.008 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|1:1.13:0.02,0.83,0.15 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.15:0.856,0.138,0.006 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0,0.042,0.958 1|1:2:0,0,1 0|0:0.142:0.863,0.131,0.005 0|0:0.104:0.901,0.094,0.005 0|0:0.004:0.996,0.004,0 0|0:0.123:0.881,0.115,0.004 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.473:0.528,0.471,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.9,0.096,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.092,0.904 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0.082:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16861796 SNP-3.16860669. C A . PASS AR2=0.977;DR2=0.98;AF=0.44 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.944,0.052,0.004 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|1:1:0,1,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0.168:0.841,0.15,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.808,0.182,0.01 0|0:0.199:0.811,0.179,0.01 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0.203:0.808,0.182,0.01 0|0:0.212:0.799,0.189,0.011 0|1:1:0,1,0 0|0:0.21:0.801,0.188,0.011 0|0:0:1,0,0 0|0:0.19:0.819,0.173,0.008 0|0:0:1,0,0 0|0:0.209:0.802,0.187,0.011 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.813,0.178,0.01 1|0:1:0,1,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.797,0.144,0.059 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.989:0,0.011,0.989 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.176:0.831,0.161,0.007 0|0:0.21:0.801,0.188,0.011 0|0:0.273:0.749,0.229,0.022 0|0:0:1,0,0 0|0:0.218:0.794,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.196:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0.218:0.794,0.194,0.012 0|0:0.199:0.811,0.179,0.01 0|0:0.18:0.828,0.164,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.177,0.01 1|0:1:0,1,0 0|0:0.19:0.818,0.173,0.009 1|1:2:0,0,1 0|0:0.21:0.801,0.188,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.818,0.173,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.049,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.858,0.132,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 +3 16864273 SNP-3.16863146. A G . PASS AR2=0.991;DR2=0.993;AF=0.422 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.95:0.055,0.94,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.933 1|1:1.297:0.032,0.639,0.329 1|1:1.887:0.003,0.106,0.89 1|1:2:0,0,1 1|1:1.897:0.004,0.094,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.086,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.004,0.147,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.527:0.024,0.424,0.552 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.848:0.005,0.143,0.852 1|1:2:0,0,1 1|1:1.933:0.002,0.063,0.935 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.929:0.001,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.909:0.002,0.086,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.898:0.003,0.097,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16865191 SNP-3.16864064. A G . PASS AR2=1;DR2=1;AF=0.233 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16865836 SNP-3.16864709. C A . PASS AR2=0.999;DR2=0.999;AF=0.408 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.003,0.08,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.003,0.087,0.909 1|1:1.977:0.001,0.022,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16866568 SNP-3.16865441. A G . PASS AR2=0.853;DR2=0.867;AF=0.299 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.084:0.211,0.494,0.295 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.304:0.111,0.474,0.415 0|0:0:1,0,0 1|0:1.056:0.224,0.495,0.281 1|1:2:0,0,1 0|1:1.073:0.216,0.496,0.288 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.387:0.095,0.422,0.483 1|0:1.083:0.211,0.495,0.294 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.313:0.101,0.485,0.414 1|1:1.272:0.118,0.492,0.39 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.041:0.231,0.497,0.272 0|0:0:1,0,0 1|1:1.032:0.235,0.497,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.024:0.238,0.501,0.261 0|0:1.042:0.231,0.497,0.273 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.772,0.214,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.985:0.262,0.491,0.247 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.993:0.256,0.494,0.249 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.938:0.3,0.462,0.238 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.157:0.193,0.457,0.35 0|0:0.423:0.641,0.295,0.064 0|0:0:1,0,0 1|0:1.042:0.231,0.497,0.273 0|0:0:1,0,0 1|1:0.97:0.265,0.499,0.235 0|0:0.327:0.707,0.258,0.035 0|0:0.926:0.289,0.497,0.214 0|0:0.964:0.272,0.491,0.237 1|0:0.928:0.281,0.51,0.209 0|1:0.835:0.365,0.436,0.2 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.911,0.088,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.898:0.3,0.502,0.198 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.093:0.223,0.461,0.316 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.432:0.638,0.292,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.833,0.155,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.972,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.042:0.231,0.497,0.273 0|0:0.23:0.782,0.206,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.245:0.142,0.47,0.388 1|0:1.073:0.216,0.495,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.096:0.206,0.492,0.302 0|0:1.231:0.128,0.513,0.359 1|0:1.053:0.249,0.448,0.303 1|1:2:0,0,1 0|0:0.143:0.87,0.117,0.013 1|0:1.339:0.12,0.42,0.46 0|0:0:1,0,0 1|0:1.058:0.224,0.495,0.281 0|0:0:1,0,0 0|0:0.409:0.656,0.28,0.065 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.103:0.203,0.492,0.306 0|0:0:1,0,0 1|1:1.268:0.128,0.476,0.396 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.056:0.946,0.053,0.002 1|0:0.98:0.266,0.487,0.246 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.058:0.224,0.495,0.281 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.079:0.213,0.495,0.292 0|0:0.704:0.449,0.399,0.153 0|0:0.04:0.96,0.04,0 0|0:0.252:0.765,0.217,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.15:0.183,0.485,0.332 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.952:0.301,0.446,0.253 0|1:1.078:0.214,0.494,0.292 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.042:0.231,0.497,0.273 1|0:0.936:0.286,0.493,0.222 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.279:0.734,0.253,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.036:0.234,0.497,0.27 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.076:0.209,0.505,0.286 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.812,0.161,0.027 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16867052 SNP-3.16865925. A G . PASS AR2=0.885;DR2=0.888;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.206:0.173,0.449,0.378 0|0:1.077:0.213,0.497,0.29 0|1:1.077:0.213,0.497,0.29 0|1:1.077:0.213,0.497,0.29 1|0:1.077:0.213,0.497,0.29 1|0:1.077:0.213,0.497,0.29 0|0:0:1,0,0 1|0:1.059:0.221,0.498,0.28 1|0:1.03:0.236,0.498,0.266 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.059:0.221,0.498,0.28 1|0:1.164:0.184,0.468,0.348 1|0:1.059:0.221,0.498,0.28 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.077:0.213,0.497,0.29 1|0:1.038:0.232,0.498,0.27 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.03:0.236,0.498,0.266 1|0:1.06:0.221,0.498,0.281 1|0:1:0,1,0 0|1:1.077:0.213,0.497,0.29 0|1:1.077:0.213,0.497,0.29 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.628:0.004,0.364,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.017,0.112,0.871 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.005,0.179,0.817 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1.038:0.232,0.498,0.27 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.8:0.345,0.511,0.145 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.134:0.187,0.492,0.321 1|0:1.059:0.221,0.498,0.28 0|1:1.08:0.213,0.494,0.293 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.077:0.213,0.497,0.29 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.017,0.128,0.855 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.061:0.22,0.498,0.282 1|0:1.038:0.232,0.498,0.27 0|0:0:1,0,0 1|0:1.077:0.213,0.497,0.29 0|0:1.1:0.203,0.495,0.303 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:1.077:0.213,0.497,0.29 1|1:2:0,0,1 1|1:1.038:0.232,0.498,0.27 0|1:1:0,1,0 0|1:1.077:0.213,0.497,0.29 1|0:1.046:0.229,0.497,0.274 0|0:0:1,0,0 0|1:1.059:0.221,0.498,0.281 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.734:0.007,0.252,0.741 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.038:0.232,0.498,0.27 1|1:2:0,0,1 0|1:1.038:0.232,0.498,0.27 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.038:0.232,0.498,0.27 0|1:1:0,1,0 1|0:1.084:0.21,0.496,0.294 1|1:1.059:0.221,0.498,0.28 1|0:1.059:0.221,0.498,0.28 0|1:1:0,1,0 0|1:1.142:0.189,0.48,0.331 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.017,0.123,0.86 1|1:1.038:0.232,0.498,0.27 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16867616 SNP-3.16866489. A G . PASS AR2=0.988;DR2=0.99;AF=0.296 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.007,0.124,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.011,0.182,0.808 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.781:0.012,0.195,0.793 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.519:0.066,0.349,0.585 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.788,0.197,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.807:0.01,0.174,0.816 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0,0.073,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.014,0.205,0.782 0|0:0:1,0,0 1|1:1.857:0.007,0.129,0.864 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.011,0.137,0.852 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16867809 SNP-3.16866682. A G . PASS AR2=0.966;DR2=0.973;AF=0.348 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.133:0.871,0.124,0.004 0|0:0.052:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.401:0.64,0.319,0.041 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.856:0.007,0.131,0.862 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.349:0.681,0.288,0.031 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.856:0.007,0.131,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.002,0.088,0.91 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.384:0.645,0.327,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.349:0.681,0.288,0.031 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.56:0.057,0.326,0.617 1|0:1.164:0.169,0.498,0.333 0|0:0.004:0.996,0.004,0 0|0:0.204:0.808,0.18,0.012 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.295:0.707,0.29,0.002 1|1:1.941:0,0.059,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.873,0.127,0 0|0:0.018:0.982,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.097:0.214,0.475,0.311 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.063:0.942,0.053,0.005 1|1:1.841:0.007,0.145,0.848 0|0:0:1,0,0 0|0:0.357:0.675,0.293,0.032 0|0:0.351:0.68,0.289,0.031 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.915,0.078,0.007 1|1:1.992:0,0.008,0.992 1|1:1.836:0.005,0.155,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0.351:0.68,0.289,0.031 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.681,0.288,0.031 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.826:0.008,0.157,0.834 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.862:0.007,0.125,0.869 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16868418 SNP-3.16867291. A G . PASS AR2=0.996;DR2=0.997;AF=0.324 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.007:0,0.993,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.771,0.212,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.191:0.068,0.674,0.259 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16868554 SNP-3.16867427. C A . PASS AR2=0.986;DR2=0.987;AF=0.408 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.216:0.795,0.193,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.916,0.081,0.003 0|0:0.044:0.958,0.04,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.699,0.289,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.098:0.902,0.097,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.083:0.214,0.489,0.297 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.117:0.196,0.492,0.313 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.218:0.794,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.913,0.087,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.208:0.803,0.186,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.12:0.195,0.491,0.314 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 +3 16869013 SNP-3.16867886. A G . PASS AR2=1;DR2=1;AF=0.451 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16869049 SNP-3.16867922. C A . PASS AR2=0.993;DR2=0.993;AF=0.377 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.921:0.293,0.492,0.214 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.918:0.293,0.496,0.211 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.915:0.295,0.495,0.21 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16869162 SNP-3.16868035. A G . PASS AR2=0.955;DR2=0.966;AF=0.277 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0.001 1|1:1.631:0.041,0.287,0.672 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.003,0.122,0.875 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.85:0.315,0.52,0.165 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.46:0,0.54,0.46 0|0:0:1,0,0 1|1:1.618:0.033,0.316,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.425:0.098,0.379,0.523 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.364:0.101,0.434,0.465 0|1:1.199:0.093,0.616,0.291 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.649:0.06,0.231,0.709 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.025:0.191,0.594,0.216 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.008,0.152,0.84 0|0:0.012:0.988,0.012,0 1|1:1.648:0.06,0.232,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.007,0.122,0.871 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.206:0.045,0.704,0.251 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.648:0.06,0.233,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.005,0.134,0.861 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.802:0.024,0.149,0.827 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.628:0.062,0.249,0.689 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.531:0.12,0.229,0.651 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.941:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.83:0.013,0.143,0.844 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.394:0.112,0.382,0.506 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16869256 SNP-3.16868129. A G . PASS AR2=0.889;DR2=0.909;AF=0.216 GT:DS:GP 1|1:2:0,0,1 0|0:0.073:0.932,0.062,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.82,0.169,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.923:0.281,0.514,0.204 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.798:0.36,0.482,0.158 1|1:2:0,0,1 0|0:0.458:0.595,0.351,0.054 0|0:0.174:0.837,0.152,0.011 1|1:1.276:0.118,0.487,0.394 1|1:2:0,0,1 0|1:1.038:0.229,0.503,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.458:0.595,0.351,0.054 0|0:0:1,0,0 0|0:0.462:0.592,0.353,0.055 0|0:0.858:0.337,0.467,0.196 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.148:0.866,0.12,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.06:0.162,0.616,0.222 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.734:0.4,0.466,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.479:0.58,0.361,0.059 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.374:0.098,0.431,0.471 0|0:0.22:0.789,0.203,0.009 0|0:0.176:0.835,0.155,0.011 0|0:0:1,0,0 0|0:0.103:0.899,0.099,0.002 0|0:0.377:0.65,0.324,0.027 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.865:0.336,0.463,0.201 0|0:0:1,0,0 1|0:0.968:0.154,0.724,0.122 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.736,0.236,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.932,0.065,0.003 0|0:0.203:0.804,0.189,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.839,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.832:0.389,0.39,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.953,0.046,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|1:0.98:0.256,0.509,0.235 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.917:0.294,0.495,0.211 0|0:0.457:0.596,0.351,0.053 0|0:0:1,0,0 0|0:0.466:0.589,0.356,0.055 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.226:0.807,0.16,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.462:0.593,0.352,0.055 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.481:0.577,0.364,0.058 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.688:0.462,0.388,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.897:0.299,0.506,0.195 0|0:0.17:0.836,0.157,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.139:0.868,0.125,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.908:0.329,0.435,0.236 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.951:0.277,0.495,0.228 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.937,0.062,0.002 0|0:0:1,0,0 0|0:0.084:0.92,0.077,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.012,0.144,0.844 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.187:0.819,0.175,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.95,0.048,0.002 0|0:0:1,0,0 +3 16869645 SNP-3.16868518. C A . PASS AR2=0.995;DR2=0.996;AF=0.49 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.634:0.084,0.198,0.718 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.025:0.239,0.497,0.264 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16873120 SNP-3.16871993. C A . PASS AR2=0.996;DR2=0.997;AF=0.455 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.159:0.843,0.154,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.517:0.623,0.236,0.14 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16873753 SNP-3.16872626. A G . PASS AR2=0.987;DR2=0.989;AF=0.252 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.83:0.007,0.155,0.838 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.008,0.161,0.831 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.007,0.145,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.004,0.128,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.008,0.161,0.831 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.823:0.008,0.161,0.831 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.823:0.008,0.161,0.831 1|1:1.861:0.005,0.129,0.866 1|1:2:0,0,1 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.861:0.004,0.131,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.008,0.16,0.832 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.008,0.161,0.831 1|1:1.964:0.002,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.913:0.003,0.081,0.916 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16874793 SNP-3.16873666. C A . PASS AR2=0.992;DR2=0.996;AF=0.434 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.959,0.04,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.012:0.399,0.19,0.411 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16874827 SNP-3.16873700. C A . PASS AR2=1;DR2=1;AF=0.424 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16875286 SNP-3.16874159. A G . PASS AR2=0.999;DR2=0.999;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.002,0.057,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.003,0.058,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.002,0.058,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16876042 SNP-3.16874915. A G . PASS AR2=0.98;DR2=0.984;AF=0.511 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.359:0.641,0.359,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.017,0.227,0.756 1|1:1.734:0.018,0.23,0.752 1|1:1.724:0.019,0.238,0.743 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.737:0.022,0.22,0.758 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.719:0.02,0.242,0.739 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.018,0.233,0.749 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.612:0.031,0.326,0.643 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.732:0.018,0.232,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.73:0.018,0.233,0.748 1|1:2:0,0,1 1|0:1.125:0.02,0.834,0.145 0|0:0:1,0,0 1|1:1.886:0.005,0.103,0.892 1|0:1:0,1,0 1|1:1.724:0.019,0.239,0.742 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.725:0.019,0.237,0.744 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.895:0.004,0.097,0.899 0|0:0:1,0,0 1|1:1.913:0.002,0.083,0.915 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.006,0.137,0.857 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.949 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.002,0.059,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16876766 SNP-3.16875639. C A . PASS AR2=0.999;DR2=0.999;AF=0.408 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.018:0,0.981,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.85:0.002,0.146,0.852 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16877583 SNP-3.16876456. A G . PASS AR2=1;DR2=1;AF=0.2 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16878653 SNP-3.16877526. C A . PASS AR2=0.999;DR2=0.999;AF=0.4 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.006,0.099,0.895 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16879736 SNP-3.16878609. C A . PASS AR2=0.998;DR2=0.998;AF=0.413 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.235:0.019,0.727,0.254 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16881068 SNP-3.16879941. C A . PASS AR2=0.908;DR2=0.928;AF=0.313 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.11:0.21,0.471,0.319 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.781:0.015,0.19,0.796 1|1:1.93:0.003,0.064,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.101,0.003 0|0:0:1,0,0 0|0:0.108:0.895,0.101,0.003 0|0:0.693:0.442,0.423,0.135 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.197:0.813,0.176,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.909,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.317:0.702,0.279,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.169:0.842,0.147,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.399:0.622,0.357,0.021 0|0:0.093:0.91,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.796,0.168,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.862,0.131,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.203:0.169,0.459,0.372 1|1:2:0,0,1 1|1:1.191:0.184,0.44,0.376 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.587:0.061,0.292,0.647 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.281:0.153,0.413,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.011,0.098,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.007,0.128,0.865 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.167:0.836,0.16,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.632:0.01,0.348,0.642 0|0:0:1,0,0 1|0:0.991:0.27,0.47,0.26 0|0:0:1,0,0 1|1:1.416:0.088,0.408,0.504 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.387:0.166,0.282,0.553 1|0:1.192:0.177,0.454,0.369 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.026:0.196,0.582,0.222 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.019:0.244,0.493,0.263 1|1:2:0,0,1 1|1:1.487:0.057,0.398,0.545 1|1:1.506:0.013,0.467,0.519 0|0:0:1,0,0 1|1:1.646:0.008,0.338,0.654 0|0:0:1,0,0 1|1:1.962:0.001,0.035,0.963 0|0:0:1,0,0 0|1:1.013:0.292,0.404,0.304 0|1:0.961:0.272,0.495,0.233 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.229:0.258,0.256,0.487 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.066:0.249,0.436,0.315 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.075:0.231,0.464,0.305 0|0:0:1,0,0 1|1:1.555:0.048,0.349,0.603 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.827,0.167,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.152:0.859,0.131,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.917:0.262,0.559,0.179 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.657:0.047,0.249,0.704 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0.001,0.03,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.856:0.002,0.141,0.858 1|1:1.619:0.063,0.254,0.683 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.205:0.159,0.477,0.364 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16882354 SNP-3.16881227. A G . PASS AR2=0.959;DR2=0.966;AF=0.379 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.167:0.174,0.485,0.341 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.471:0.071,0.386,0.543 1|1:1.389:0.094,0.422,0.483 1|1:2:0,0,1 1|1:1.412:0.088,0.412,0.5 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.057:0.22,0.504,0.277 1|0:1:0,1,0 0|1:1.189:0.166,0.48,0.355 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.167:0.174,0.486,0.341 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.187:0.166,0.48,0.353 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.226:0.152,0.47,0.378 0|1:1:0,1,0 1|1:1.102:0.198,0.501,0.301 1|0:1.171:0.175,0.478,0.346 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.187:0.166,0.48,0.353 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 +3 16884674 SNP-3.16883547. C A . PASS AR2=0.998;DR2=0.998;AF=0.433 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.479:0.557,0.408,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 +3 16885632 SNP-3.16884505. C A . PASS AR2=0.996;DR2=0.997;AF=0.438 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.224:0.79,0.196,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.946,0.054,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.836,0.157,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.218:0.794,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.808,0.183,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16887221 SNP-3.16886094. C A . PASS AR2=0.975;DR2=0.98;AF=0.371 GT:DS:GP 1|1:1.825:0.013,0.149,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.699:0.013,0.275,0.712 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.746:0.008,0.238,0.754 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:1.735:0.018,0.23,0.753 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.715:0.019,0.247,0.734 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.004,0.048,0.949 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.412:0.101,0.386,0.513 1|1:1.849:0.003,0.146,0.851 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.885:0,0.115,0.885 0|0:0:1,0,0 1|1:1.793:0.01,0.186,0.804 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.002,0.083,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.01,0.146,0.844 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.955:0.001,0.042,0.956 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.016,0.211,0.773 1|1:1.855:0.009,0.127,0.864 1|1:1.755:0.005,0.234,0.76 1|1:1.835:0,0.164,0.836 1|1:1.841:0.009,0.141,0.85 1|1:2:0,0,1 1|1:1.78:0.01,0.2,0.79 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.812:0.012,0.164,0.824 1|1:1.528:0.059,0.355,0.587 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.644:0.055,0.245,0.7 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.002,0.045,0.953 1|1:2:0,0,1 1|1:1.883:0.009,0.1,0.891 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.721:0.002,0.275,0.723 1|1:1.965:0.001,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.002,0.048,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16887442 SNP-3.16886315. A G . PASS AR2=0.946;DR2=0.963;AF=0.298 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.723:0.42,0.437,0.143 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.646:0.455,0.445,0.101 1|0:0.665:0.446,0.443,0.111 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.774:0.377,0.472,0.151 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.779:0.375,0.471,0.154 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.599:0.484,0.434,0.082 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.908,0.092,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.75:0.4,0.45,0.15 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.673:0.441,0.446,0.114 1|0:0.866:0.311,0.513,0.177 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.708:0.416,0.461,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.659:0.45,0.441,0.109 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.642:0.462,0.434,0.104 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.779:0.381,0.46,0.16 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.657:0.451,0.44,0.108 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16887944 SNP-3.16886817. C A . PASS AR2=1;DR2=1;AF=0.409 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16894190 SNP-3.16893063. A G . PASS AR2=0.992;DR2=0.994;AF=0.53 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.861:0.008,0.123,0.869 1|1:1.977:0.001,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.966 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:1.485:0.179,0.157,0.664 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0,0.058,0.941 1|1:1.959:0.002,0.037,0.961 1|1:1.955:0.001,0.044,0.955 1|1:1.904:0.001,0.094,0.905 1|1:1.976:0.001,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.987:0,0.012,0.988 1|1:2:0,0,1 0|0:0.458:0.542,0.458,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0.001,0.022,0.978 1|1:2:0,0,1 1|1:1.957:0.002,0.039,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.006:0.014,0.966,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.977:0.001,0.022,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.977:0.001,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16894727 SNP-3.16893600. C A . 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A G . PASS AR2=0.912;DR2=0.926;AF=0.245 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.381:0.677,0.266,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.405:0.09,0.414,0.495 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.915:0.297,0.492,0.211 0|0:0:1,0,0 1|0:0.979:0.262,0.497,0.241 1|1:2:0,0,1 1|1:0.998:0.252,0.499,0.249 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.221:0.145,0.489,0.366 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.76,0.217,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.382:0.629,0.36,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0.253:0.795,0.158,0.047 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.903,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0.622:0.466,0.445,0.089 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.31:0.079,0.533,0.388 1|0:0.828:0.307,0.558,0.135 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.683:0.437,0.444,0.12 0|0:0.786:0.357,0.5,0.143 0|0:0:1,0,0 0|0:0.093:0.917,0.072,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0.104:0.898,0.1,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0.212:0.791,0.205,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.155:0.193,0.459,0.348 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.825,0.166,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.765,0.229,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.846,0.146,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.038:0.229,0.504,0.267 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.298:0.727,0.249,0.025 0|0:0:1,0,0 1|1:1.052:0.223,0.503,0.275 1|1:2:0,0,1 0|0:0.956:0.274,0.497,0.229 0|0:0:1,0,0 0|0:0.209:0.793,0.205,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 1|1:2:0,0,1 0|0:0.69:0.411,0.489,0.101 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.166:0.168,0.498,0.334 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:0.718:0.431,0.419,0.149 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.015:0.243,0.5,0.257 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.251:0.018,0.713,0.269 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.839,0.156,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.987:0.257,0.498,0.244 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.865,0.125,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.92,0.078,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.001,0.147,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 16906662 SNP-3.16905535. A G . PASS AR2=0.925;DR2=0.946;AF=0.409 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.6:0.045,0.31,0.645 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.662:0.029,0.28,0.691 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.6:0.047,0.307,0.646 1|1:2:0,0,1 1|1:1.425:0.079,0.416,0.504 1|1:1.618:0.036,0.309,0.655 0|0:0:1,0,0 1|0:0.901:0.332,0.435,0.233 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.049,0.343,0.607 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.476:0.07,0.384,0.546 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.579:0.045,0.332,0.624 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.569:0.047,0.338,0.616 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.558:0.037,0.367,0.595 1|1:2:0,0,1 0|1:1.326:0.125,0.425,0.45 1|0:1:0,1,0 1|1:1.674:0.028,0.27,0.702 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.846,0.147,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.52:0.054,0.373,0.573 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.039,0.313,0.648 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.563:0.048,0.341,0.611 1|1:1.614:0.034,0.317,0.648 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.308:0.121,0.45,0.429 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.635:0.033,0.298,0.669 1|1:2:0,0,1 0|0:0.11:0.89,0.11,0 0|1:1.031:0.228,0.513,0.259 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.343:0.11,0.436,0.453 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.534:0.057,0.351,0.592 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.325:0.114,0.446,0.439 1|0:1.361:0.103,0.433,0.464 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.658:0.031,0.279,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.425:0.089,0.397,0.514 1|1:2:0,0,1 0|1:1.527:0.059,0.356,0.586 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.709:0.028,0.234,0.738 1|1:1.674:0.028,0.27,0.702 0|0:0:1,0,0 1|1:1.673:0.028,0.271,0.701 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.674:0.028,0.27,0.702 1|1:1.68:0.027,0.266,0.707 0|0:0:1,0,0 1|1:1.58:0.051,0.318,0.631 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16907231 SNP-3.16906104. C A . PASS AR2=0.983;DR2=0.987;AF=0.386 GT:DS:GP 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.985:0,0.014,0.985 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.923:0.002,0.072,0.925 1|1:2:0,0,1 1|1:1.954:0.001,0.045,0.955 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.002,0.129,0.869 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.418:0.088,0.405,0.507 1|1:1.953:0.001,0.045,0.954 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0,0.069,0.931 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 1|1:1.935:0.002,0.061,0.937 1|1:1.925:0.001,0.073,0.926 0|0:0.176:0.824,0.176,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.235:0.239,0.288,0.473 1|1:1.955:0,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0.001,0.064,0.935 1|1:2:0,0,1 1|1:1.85:0.002,0.146,0.852 1|1:2:0,0,1 1|1:1.911:0.004,0.082,0.915 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 1|1:1.894:0.01,0.086,0.904 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0.002,0.044,0.955 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:1.952:0,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0,0.068,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16907925 SNP-3.16906798. A G . PASS AR2=0.95;DR2=0.965;AF=0.515 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.811:0.4,0.388,0.211 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.84:0.008,0.144,0.848 0|0:0:1,0,0 1|1:1.744:0.024,0.207,0.768 1|1:1.696:0.016,0.271,0.712 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.83:0.007,0.155,0.838 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.683:0.025,0.268,0.707 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.001,0.096,0.903 1|1:2:0,0,1 1|1:1.792:0.016,0.175,0.808 1|1:2:0,0,1 1|1:1.506:0.085,0.324,0.591 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.006,0.083,0.911 1|1:2:0,0,1 1|0:1.615:0.05,0.285,0.665 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.03,0.191,0.778 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.613:0.03,0.328,0.642 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.83,0.17,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.601:0.49,0.42,0.09 0|0:0:1,0,0 1|0:0.459:0.545,0.45,0.004 1|1:1.481:0.059,0.401,0.54 0|0:0.106:0.898,0.098,0.004 0|0:0.172:0.837,0.155,0.008 0|0:0.38:0.648,0.325,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:1.721:0.01,0.259,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.002,0.056,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.349:0.108,0.436,0.456 1|1:2:0,0,1 1|1:1.869:0.004,0.122,0.874 1|1:1.698:0.02,0.262,0.718 1|1:2:0,0,1 1|1:1.93:0.002,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.83:0.008,0.153,0.839 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.014,0.157,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.329:0.114,0.443,0.443 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.842:0.005,0.147,0.847 1|1:2:0,0,1 1|1:1.782:0.01,0.198,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.685:0.025,0.266,0.709 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.629:0.033,0.304,0.662 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.011,0.155,0.835 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.764:0.016,0.203,0.78 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.006,0.139,0.855 1|1:2:0,0,1 1|1:1.896:0.004,0.095,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.003,0.063,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16908677 SNP-3.16907550. C A . PASS AR2=0.984;DR2=0.988;AF=0.411 GT:DS:GP 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.009,0.165,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.066,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.683:0.359,0.6,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.702:0.016,0.266,0.718 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.398:0.089,0.425,0.486 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.68:0.028,0.263,0.708 1|1:1.859:0.002,0.138,0.861 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.004,0.156,0.84 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0.001,0.039,0.959 0|0:0:1,0,0 1|1:1.825:0.004,0.167,0.829 1|0:0.829:0.32,0.531,0.149 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.006,0.125,0.869 1|1:1.937:0.001,0.062,0.938 1|1:1.861:0.001,0.137,0.862 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.892:0.003,0.102,0.895 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.003,0.056,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16908694 SNP-3.16907567. A G . PASS AR2=0.973;DR2=0.978;AF=0.498 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.726:0.019,0.236,0.745 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.709:0.022,0.247,0.731 1|1:2:0,0,1 1|1:1.769:0.014,0.202,0.784 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.006,0.103,0.891 0|1:0.681:0.334,0.651,0.015 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 1|1:1.819:0.016,0.149,0.835 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.732:0.019,0.23,0.751 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.923:0.077,0.923,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.691:0.038,0.234,0.729 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.797:0.011,0.18,0.809 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.709:0.022,0.247,0.731 1|0:1.704:0.023,0.251,0.727 1|1:1.964:0.001,0.034,0.965 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:1.833:0.009,0.15,0.841 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.815:0.011,0.163,0.826 1|1:1.773:0.014,0.198,0.787 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.776:0.014,0.195,0.79 1|1:2:0,0,1 1|1:1.816:0.018,0.149,0.834 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.709:0.022,0.247,0.731 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.013,0.203,0.784 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.009,0.151,0.84 1|1:2:0,0,1 1|1:1.826:0.01,0.155,0.836 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.754:0.015,0.216,0.769 1|1:2:0,0,1 1|1:1.809:0.011,0.168,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.002,0.066,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.789:0.014,0.183,0.803 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.846:0.002,0.149,0.848 +3 16911094 SNP-3.16909967. C A . PASS AR2=0.995;DR2=0.997;AF=0.387 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.428:0.576,0.42,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0,0.066,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.792:0.011,0.187,0.803 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.757:0.015,0.212,0.773 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16912862 SNP-3.16911735. A G . PASS AR2=0.917;DR2=0.931;AF=0.359 GT:DS:GP 0|0:0.028:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.876:0.314,0.496,0.19 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|1:0.819:0.347,0.487,0.166 1|0:1.48:0.07,0.38,0.55 0|1:0.747:0.393,0.468,0.14 0|0:0:1,0,0 1|1:1.454:0.076,0.394,0.53 0|1:0.881:0.314,0.491,0.195 0|0:0:1,0,0 0|0:0.791:0.368,0.474,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.656:0.461,0.422,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.119:0.197,0.486,0.316 0|0:0:1,0,0 0|1:1.338:0.139,0.384,0.477 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.481:0.53,0.459,0.011 1|1:2:0,0,1 1|1:1.828:0.006,0.161,0.834 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.461:0.09,0.359,0.551 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.798:0.014,0.175,0.811 0|0:0:1,0,0 0|0:0.059:0.942,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.05,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.025,0.001 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.054:0.237,0.473,0.29 0|0:0:1,0,0 1|1:1.583:0.037,0.342,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 1|1:2:0,0,1 1|0:0.817:0.26,0.663,0.077 1|1:2:0,0,1 1|0:0.948:0.279,0.494,0.227 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.921:0.29,0.5,0.211 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.051,0.304,0.645 1|1:2:0,0,1 0|0:0.049:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0.812:0.352,0.484,0.164 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.039:0.237,0.487,0.276 1|1:1.972:0.001,0.027,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.401,0.494,0.105 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.777:0.375,0.472,0.153 0|1:0.748:0.392,0.467,0.141 0|1:0.843:0.336,0.485,0.179 0|0:0:1,0,0 0|0:0.563:0.539,0.359,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.007,0.129,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.068,0.001 0|0:0:1,0,0 0|0:0.102:0.899,0.1,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.751:0.393,0.464,0.144 1|1:2:0,0,1 1|1:1.938:0.002,0.058,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.789:0.367,0.476,0.156 1|1:2:0,0,1 0|0:0.691:0.434,0.442,0.125 0|0:0.767:0.382,0.468,0.15 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0.001,0.026,0.973 0|0:0:1,0,0 1|1:1.973:0.001,0.026,0.974 1|1:1.85:0.009,0.132,0.859 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.025:0.226,0.522,0.251 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.818,0.168,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16913768 SNP-3.16912641. C A . PASS AR2=0.976;DR2=0.981;AF=0.331 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.662:0.023,0.293,0.684 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.923:0.252,0.573,0.175 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.867:0.292,0.549,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.022,0.247,0.731 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.007,0.121,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.416:0.046,0.491,0.463 1|1:2:0,0,1 1|1:1.97:0.001,0.028,0.971 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:1.699:0.001,0.299,0.7 0|0:0:1,0,0 1|0:1.186:0.11,0.594,0.296 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.813:0.003,0.181,0.816 1|1:1.598:0.022,0.358,0.62 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.025,0.974 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0,0.061,0.938 1|1:1.845:0.009,0.138,0.853 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0.001,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.886:0.007,0.1,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.018,0.237,0.745 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.144:0.864,0.128,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.814,0.167,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.781,0.205,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.953:0,0.047,0.953 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.882:0.009,0.1,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16913889 SNP-3.16912762. C A . PASS AR2=0.918;DR2=0.943;AF=0.493 GT:DS:GP 1|1:1.907:0.003,0.086,0.911 1|1:2:0,0,1 1|1:1.802:0.024,0.149,0.827 0|0:0.584:0.625,0.165,0.209 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.643:0.584,0.189,0.227 1|1:1.593:0.042,0.323,0.635 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.554:0.518,0.409,0.072 1|1:2:0,0,1 0|0:0.437:0.612,0.339,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.359:0.096,0.449,0.455 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.255:0.149,0.446,0.404 0|0:0.605:0.487,0.421,0.092 0|0:0:1,0,0 0|1:0.433:0.617,0.333,0.05 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.15:0.231,0.388,0.381 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.751,0.235,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.883:0.316,0.485,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.677,0.286,0.037 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.272:0.764,0.201,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.456:0.59,0.363,0.047 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0.095:0.908,0.089,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.006,0.224,0.77 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.002,0.038,0.96 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.008,0.177,0.815 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.001,0.088,0.911 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.943:0.362,0.334,0.305 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.489:0.566,0.378,0.056 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.452:0.601,0.345,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.024:0.159,0.658,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.777,0.21,0.013 0|0:0:1,0,0 1|1:1.877:0.006,0.112,0.882 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.01,0.148,0.842 0|0:0:1,0,0 1|1:1.683:0.025,0.266,0.709 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.417:0.622,0.339,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.412:0.617,0.355,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.591:0.497,0.415,0.088 1|1:2:0,0,1 0|0:0.412:0.633,0.321,0.046 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.642:0.062,0.235,0.703 0|0:0:1,0,0 0|0:0.506:0.535,0.424,0.041 1|0:0.877:0.272,0.578,0.149 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 1|1:1.787:0.025,0.164,0.811 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.483:0.576,0.365,0.059 0|0:0:1,0,0 0|0:0.483:0.576,0.365,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.159,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.003,0.069,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.006,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.264:0.175,0.386,0.439 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 +3 16916409 SNP-3.16915282. A G . PASS AR2=0.987;DR2=0.993;AF=0.239 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.584:0.502,0.411,0.087 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.54:0.535,0.39,0.075 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0,0.106,0.894 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.581:0.505,0.41,0.086 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16918539 SNP-3.16917412. A G . PASS AR2=0.995;DR2=0.996;AF=0.432 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.919:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.004,0.097,0.9 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.67:0.018,0.295,0.687 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.002,0.078,0.92 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.002,0.074,0.924 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.012,0.13,0.858 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.897:0.003,0.097,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 16922757 SNP-3.16921630. A G . PASS AR2=0.954;DR2=0.962;AF=0.481 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.037,0.317,0.646 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.989:0.222,0.568,0.211 0|1:1:0,1,0 1|0:1.064:0.207,0.522,0.271 1|1:1.885:0.003,0.11,0.887 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.308:0.014,0.663,0.322 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.1:0.114,0.672,0.214 0|1:1:0,1,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.792:0.011,0.186,0.803 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.389:0.084,0.444,0.473 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.847:0.001,0.151,0.848 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.901:0.002,0.095,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.619:0.039,0.304,0.658 1|0:0.855:0.333,0.479,0.188 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.181,0.809 0|1:1:0,1,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.263:0.134,0.469,0.397 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.222:0.153,0.473,0.374 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.701:0.026,0.247,0.727 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.11:0.182,0.526,0.292 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.002,0.095,0.903 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.707:0.027,0.24,0.733 1|0:1:0,1,0 1|1:1.241:0.145,0.469,0.386 0|0:0:1,0,0 1|1:1.737:0.019,0.225,0.756 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.794:0.011,0.184,0.805 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.768:0.015,0.203,0.783 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.181,0.809 1|1:1.97:0.001,0.028,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.181,0.809 0|1:1:0,1,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:1.619:0.039,0.304,0.658 1|1:2:0,0,1 1|1:1.946:0.002,0.049,0.949 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.145:0.856,0.144,0 1|1:1.683:0.028,0.261,0.711 1|1:1.706:0.026,0.243,0.731 0|0:0:1,0,0 1|0:1:0,1,0 +3 16922834 SNP-3.16921707. C A . PASS AR2=1;DR2=1;AF=0.401 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16925079 SNP-3.16923952. A G . PASS AR2=0.999;DR2=0.999;AF=0.223 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.001,0.148,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16926996 SNP-3.16925869. C A . PASS AR2=0.971;DR2=0.976;AF=0.318 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.347:0.108,0.437,0.455 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.212:0.157,0.474,0.369 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.179:0.148,0.525,0.327 1|1:2:0,0,1 0|1:1.198:0.166,0.471,0.363 1|0:1.159:0.167,0.507,0.326 1|1:2:0,0,1 1|1:1.956:0.002,0.039,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.887:0,0.112,0.887 1|1:1.907:0.003,0.086,0.91 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.183:0.159,0.498,0.343 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.624:0.039,0.298,0.663 1|1:1.701:0.051,0.197,0.752 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 0|1:1.36:0.087,0.467,0.446 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.006,0.101,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.915:0.302,0.481,0.217 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16928902 SNP-3.16927775. C A . PASS AR2=1;DR2=1;AF=0.403 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16931092 SNP-3.16929965. C A . PASS AR2=0.955;DR2=0.966;AF=0.445 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.854:0.006,0.135,0.86 1|0:0.501:0.56,0.38,0.061 0|0:0.234:0.766,0.234,0 0|1:0.611:0.473,0.442,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.286:0.726,0.262,0.012 0|0:0.252:0.75,0.247,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 1|1:2:0,0,1 0|0:0.378:0.654,0.314,0.032 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.029:0.972,0.027,0.001 0|0:0.12:0.886,0.109,0.006 0|1:1:0,1,0 0|0:0.022:0.978,0.022,0 0|0:0.061:0.939,0.061,0 0|0:0:1,0,0 0|0:0.209:0.8,0.19,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.075,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.844:0.324,0.509,0.167 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.144:0.863,0.13,0.007 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.005,0.128,0.867 1|1:2:0,0,1 0|0:0.195:0.816,0.172,0.012 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.838:0.008,0.146,0.846 1|1:1.868:0.002,0.129,0.87 1|1:1.814:0.008,0.17,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.009,0.186,0.805 1|1:1.823:0.008,0.161,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.829:0.003,0.166,0.832 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.826:0.009,0.157,0.834 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.963 1|1:2:0,0,1 1|1:1.863:0.005,0.128,0.868 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.787:0.012,0.19,0.798 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.469:0.587,0.357,0.056 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.108:0.894,0.104,0.002 0|0:0.073:0.928,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.837,0.156,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.618:0.471,0.441,0.088 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.82:0.009,0.162,0.829 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.505:0.561,0.374,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.761,0.235,0.003 0|0:0:1,0,0 0|0:0.329:0.693,0.286,0.022 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.119:0.885,0.112,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0.285:0.727,0.26,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.11,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.004,0.061,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.748:0.021,0.209,0.769 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16931262 SNP-3.16930135. C A . PASS AR2=0.998;DR2=0.998;AF=0.418 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.972:0.001,0.027,0.973 1|1:1.911:0,0.089,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.063,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.038,0.1,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16936518 SNP-3.16935391. A G . PASS AR2=0.988;DR2=0.989;AF=0.313 GT:DS:GP 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.01,0.192,0.799 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:1.885:0.001,0.113,0.886 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.048,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0,0.106,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.712:0.023,0.241,0.735 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.862:0.008,0.122,0.87 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.016,0.146,0.838 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.08,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.779,0.213,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.93:0.003,0.064,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.006,0.14,0.854 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.01,0.185,0.805 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.001,0.121,0.877 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16936542 SNP-3.16935415. A G . PASS AR2=0.983;DR2=0.991;AF=0.245 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.964:0.087,0.862,0.051 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.68:0.441,0.438,0.121 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.68:0.441,0.438,0.121 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.68:0.441,0.438,0.121 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16936990 SNP-3.16935863. A G . PASS AR2=1;DR2=1;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16941790 SNP-3.16940663. A G . PASS AR2=1;DR2=1;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16944235 SNP-3.16943108. A G . PASS AR2=0.999;DR2=0.999;AF=0.551 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.14:0,0.86,0.14 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16945031 SNP-3.16943904. C A . PASS AR2=0.988;DR2=0.991;AF=0.424 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.218:0.001,0.78,0.219 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.752:0.377,0.493,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.812:0.193,0.802,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.003,0.145,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.136:0.866,0.133,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.672:0.02,0.288,0.692 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.556:0.614,0.215,0.17 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0,0.143,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16946305 SNP-3.16945178. C A . PASS AR2=0.998;DR2=0.999;AF=0.459 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.929 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.199:0.801,0.199,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16946616 SNP-3.16945489. C A . PASS AR2=0.997;DR2=0.997;AF=0.388 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.873:0.001,0.126,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.914:0.003,0.08,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.868:0.002,0.127,0.87 0|0:0:1,0,0 1|1:1.939:0,0.061,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0.001,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.002,0.038,0.96 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.94:0.002,0.056,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16948390 SNP-3.16947263. C A . PASS AR2=1;DR2=1;AF=0.399 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16957271 SNP-3.16956144. A G . PASS AR2=0.983;DR2=0.987;AF=0.255 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.723:0.009,0.259,0.732 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.702:0.013,0.273,0.714 1|1:1.857:0.005,0.132,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.553:0.063,0.32,0.617 1|1:1.732:0.016,0.235,0.748 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.763:0.386,0.465,0.149 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.011,0.307,0.682 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.323:0.712,0.252,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 16958073 SNP-3.16956946. A G . PASS AR2=1;DR2=1;AF=0.44 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16958180 SNP-3.16957053. A G . PASS AR2=1;DR2=1;AF=0.486 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16959242 SNP-3.16958115. C A . PASS AR2=0.999;DR2=0.999;AF=0.373 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.992:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.724:0,0.276,0.724 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16964467 SNP-3.16963340. A G . PASS AR2=0.999;DR2=0.999;AF=0.483 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.011:0,0.989,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 16965256 SNP-3.16964129. C A . PASS AR2=0.987;DR2=0.99;AF=0.514 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.837:0.009,0.145,0.846 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.555:0.048,0.35,0.603 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.502:0.065,0.368,0.567 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.664:0.019,0.298,0.683 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.909:0.001,0.089,0.91 1|0:1:0,1,0 1|1:1.811:0.003,0.183,0.814 1|1:1.791:0.008,0.194,0.799 1|1:2:0,0,1 1|1:1.722:0.005,0.267,0.728 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.019,0.257,0.723 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.007,0.118,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.913:0.004,0.079,0.917 1|1:2:0,0,1 0|0:0:1,0,0 +3 16966085 SNP-3.16964958. C A . PASS AR2=0.988;DR2=0.99;AF=0.333 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.881,0.118,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.145:0.226,0.404,0.37 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.922,0.077,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.005,0.17,0.825 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.005,0.128,0.867 1|1:2:0,0,1 1|1:1.921:0.001,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.845:0.005,0.144,0.85 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0.15:0.852,0.146,0.002 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.888:0.007,0.099,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.615:0.012,0.361,0.627 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.603:0.416,0.565,0.019 +3 16966140 SNP-3.16965013. A G . 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A G . PASS AR2=0.898;DR2=0.92;AF=0.363 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.958:0.001,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:1.126:0.189,0.496,0.315 0|0:0:1,0,0 0|0:0.105:0.896,0.102,0.001 1|0:1.244:0.142,0.473,0.386 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.559:0.571,0.298,0.131 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.298:0.128,0.446,0.426 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.294:0.73,0.245,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.639:0.518,0.325,0.157 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.775:0.015,0.195,0.79 1|1:2:0,0,1 1|1:1.861:0.004,0.132,0.865 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.957:0.28,0.482,0.238 1|1:1.634:0.039,0.289,0.672 1|1:1.632:0.039,0.291,0.671 0|1:1.294:0.072,0.562,0.366 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.583:0.046,0.324,0.63 1|1:2:0,0,1 1|0:1.218:0.15,0.482,0.368 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.843:0.031,0.096,0.874 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.498:0.061,0.38,0.559 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.13:0.875,0.12,0.005 1|1:2:0,0,1 0|0:0.967:0.272,0.489,0.239 1|1:1.877:0.006,0.111,0.883 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.634:0.039,0.287,0.673 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.002,0.055,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.712:0.44,0.408,0.152 0|0:0.09:0.91,0.09,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.896,0.104,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.749:0.36,0.531,0.109 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:1.845:0,0.155,0.845 1|1:1.559:0.05,0.342,0.609 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.48:0.059,0.402,0.539 0|0:0.019:0.981,0.019,0 1|1:1.624:0.04,0.297,0.664 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.809,0.169,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.182:0.201,0.415,0.384 0|0:0.24:0.819,0.123,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.482:0.061,0.396,0.543 1|1:1.532:0.054,0.36,0.586 0|0:0:1,0,0 1|1:1.939:0.003,0.055,0.942 1|1:1.941:0.002,0.055,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.75:0.401,0.448,0.151 0|1:1.079:0.206,0.509,0.285 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.869,0.126,0.006 0|1:1.195:0.16,0.485,0.355 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.276:0.11,0.505,0.386 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.908,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.176:0.831,0.162,0.007 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|1:1.485:0.077,0.362,0.561 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 1|1:1.607:0.041,0.311,0.648 1|1:1.734:0.011,0.243,0.746 0|1:1.285:0.127,0.461,0.412 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.141:0.189,0.481,0.33 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.801,0.188,0.011 0|0:0.164:0.84,0.155,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.649:0.039,0.274,0.688 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.872:0.318,0.492,0.19 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.687:0.444,0.424,0.131 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.195:0.145,0.515,0.34 +3 16967089 SNP-3.16965962. C A . PASS AR2=1;DR2=1;AF=0.397 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16967136 SNP-3.16966009. A G . PASS AR2=0.924;DR2=0.939;AF=0.248 GT:DS:GP 0|0:0.042:0.96,0.038,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.771,0.214,0.014 0|0:0.197:0.808,0.187,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.39:0.654,0.301,0.045 0|0:0:1,0,0 0|0:0.165:0.839,0.156,0.004 0|0:0.458:0.582,0.378,0.04 0|0:0.098:0.905,0.092,0.003 0|0:0.262:0.755,0.227,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.003:0.155,0.688,0.157 0|1:1:0,1,0 0|0:0.448:0.603,0.347,0.05 0|0:0:1,0,0 0|0:0.069:0.934,0.063,0.003 0|0:0.128:0.88,0.111,0.008 1|0:0.363:0.657,0.323,0.02 0|0:0.37:0.67,0.289,0.041 0|1:0.915:0.276,0.533,0.191 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.705:0.085,0.125,0.79 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.046:0.956,0.041,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.791,0.198,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.734,0.245,0.021 1|0:1:0,1,0 0|0:0.224:0.787,0.202,0.011 0|0:0.27:0.748,0.234,0.018 0|0:0.277:0.742,0.238,0.019 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.129,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.601:0.057,0.285,0.658 0|0:0.19:0.819,0.172,0.009 1|1:2:0,0,1 0|0:0.137:0.866,0.13,0.003 0|0:0.254:0.762,0.223,0.016 0|0:0.065:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.155:0.847,0.151,0.002 0|0:0:1,0,0 0|0:0.06:0.942,0.056,0.002 0|0:0.125:0.877,0.121,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0.144:0.856,0.144,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.266:0.756,0.221,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.531:0.518,0.433,0.049 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.911,0.088,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.132:0.014,0.84,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.382:0.651,0.315,0.034 0|0:0:1,0,0 1|0:1.032:0.119,0.73,0.151 1|1:2:0,0,1 0|0:0.335:0.69,0.285,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.582:0.512,0.394,0.094 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.151:0.107,0.636,0.258 0|0:0:1,0,0 0|0:0.449:0.602,0.348,0.051 1|1:2:0,0,1 0|0:0.083:0.922,0.074,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.874,0.124,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.005,0.077,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.008:0.152,0.689,0.159 0|0:0.063:0.942,0.053,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.81:0.04,0.111,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16968739 SNP-3.16967612. C A . PASS AR2=0.984;DR2=0.988;AF=0.369 GT:DS:GP 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.835:0,0.165,0.835 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|0:0.96:0.04,0.96,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.011,0.184,0.806 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.563:0.048,0.341,0.611 0|1:1:0,1,0 1|1:1.542:0.024,0.409,0.566 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.807:0.194,0.805,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.711:0.019,0.25,0.73 0|0:0:1,0,0 1|1:1.749:0.009,0.232,0.758 1|0:1:0,1,0 1|1:1.913:0.002,0.082,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.009,0.163,0.828 1|1:2:0,0,1 1|1:1.895:0.004,0.097,0.899 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.676:0.027,0.271,0.703 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.035,0.965 0|0:0:1,0,0 1|1:1.923:0.003,0.07,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.861:0.001,0.136,0.862 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.013,0.231,0.756 0|0:0:1,0,0 +3 16972073 SNP-3.16970946. A G . PASS AR2=0.947;DR2=0.962;AF=0.505 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.813:0.271,0.644,0.085 1|0:1.208:0.158,0.475,0.367 1|1:1.517:0.052,0.378,0.569 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.437:0.086,0.392,0.522 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.429:0.082,0.406,0.512 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.224:0.785,0.205,0.01 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.41:0.093,0.404,0.503 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.004,0.086,0.91 1|1:2:0,0,1 1|1:1.779:0.01,0.2,0.789 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.623:0.033,0.311,0.656 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.383:0.103,0.411,0.486 1|1:2:0,0,1 1|1:1.998:0,0.001,0.999 1|1:1.823:0.012,0.153,0.835 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.004,0.137,0.859 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.873:0.138,0.851,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.005:0.194,0.608,0.199 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.608:0.032,0.327,0.64 0|0:0:1,0,0 1|1:1.897:0.004,0.095,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.572:0.044,0.339,0.617 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.002,0.091,0.906 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.858:0.364,0.414,0.222 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.751:0.023,0.203,0.774 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 1|1:1.576:0.044,0.336,0.62 1|1:1.922:0.001,0.075,0.924 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.834:0.016,0.134,0.85 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.001,0.082,0.916 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 1|1:1.447:0.068,0.417,0.515 1|1:1.608:0.043,0.305,0.652 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.901,0.092,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.769:0.481,0.27,0.249 0|0:0:1,0,0 1|0:0.425:0.609,0.356,0.034 1|1:2:0,0,1 +3 16972738 SNP-3.16971611. C A . PASS AR2=0.991;DR2=0.993;AF=0.444 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.585:0.005,0.406,0.589 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.832,0.155,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.461:0.567,0.404,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.312:0.724,0.239,0.037 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.816,0.172,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.084:0.919,0.079,0.003 0|0:0.217:0.793,0.196,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16975586 SNP-3.16974459. A G . PASS AR2=0.96;DR2=0.971;AF=0.492 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.594:0.042,0.323,0.636 1|1:2:0,0,1 1|1:1.623:0.039,0.3,0.662 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.597:0.042,0.319,0.639 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.034,0.965 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.444:0.104,0.348,0.548 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 1|1:1.735:0.021,0.222,0.757 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.835:0.008,0.149,0.843 0|0:0:1,0,0 1|1:1.628:0.036,0.3,0.664 0|0:0:1,0,0 1|1:1.556:0.044,0.357,0.6 1|1:2:0,0,1 1|1:1.765:0.017,0.201,0.782 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.479:0.061,0.399,0.54 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.74:0.018,0.224,0.758 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.589:0.038,0.336,0.626 0|1:1:0,1,0 1|1:1.639:0.05,0.261,0.689 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.665:0.033,0.27,0.698 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:1.188:0.196,0.42,0.384 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.672:0.027,0.273,0.699 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.404:0.091,0.413,0.495 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.455:0.073,0.398,0.529 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.007,0.149,0.844 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.87:0.007,0.115,0.877 1|1:1.879:0.005,0.112,0.884 0|0:0:1,0,0 1|1:2:0,0,1 +3 16976297 SNP-3.16975170. A G . PASS AR2=0.926;DR2=0.941;AF=0.504 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.734:0.02,0.226,0.754 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.735:0.018,0.229,0.753 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.022,0.256,0.722 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.736:0.018,0.228,0.754 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0.002,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.042,0.338,0.62 1|1:1.787:0.016,0.181,0.803 0|1:1.71:0.021,0.248,0.731 1|1:1.449:0.065,0.421,0.514 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.584:0.044,0.328,0.628 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.522:0.062,0.355,0.584 0|0:0:1,0,0 1|0:1.302:0.105,0.488,0.407 0|1:0.83:0.352,0.465,0.182 0|1:1.546:0.051,0.352,0.597 0|0:0:1,0,0 1|1:1.987:0,0.012,0.987 1|1:1.606:0.039,0.315,0.646 1|1:1.888:0.005,0.102,0.893 1|1:1.868:0.003,0.126,0.871 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.612:0.038,0.311,0.651 1|1:1.697:0.023,0.256,0.721 1|0:1.731:0.018,0.232,0.749 1|1:1.883:0.009,0.099,0.892 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.051:0.23,0.488,0.282 1|1:1.663:0.036,0.264,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.911:0.092,0.905,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.537:0.598,0.268,0.134 0|0:0:1,0,0 1|0:0.973:0.265,0.497,0.238 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.002,0.052,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.006,0.113,0.881 1|1:1.999:0,0.001,0.999 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.69:0.023,0.264,0.713 1|1:2:0,0,1 1|1:1.537:0.052,0.359,0.589 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.023,0.339,0.638 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.821:0.009,0.16,0.83 1|1:2:0,0,1 1|1:1.547:0.057,0.338,0.605 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.047,0.349,0.604 1|1:1.864:0.012,0.113,0.876 1|1:2:0,0,1 1|1:1.442:0.073,0.412,0.515 0|0:0:1,0,0 1|1:1.018:0.24,0.503,0.258 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:1.629:0.037,0.297,0.666 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.707:0.021,0.251,0.728 0|1:1.136:0.148,0.567,0.285 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.01,0.171,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.331:0.122,0.425,0.453 1|1:2:0,0,1 1|1:1.882:0.009,0.1,0.891 1|1:2:0,0,1 1|1:1.869:0.012,0.108,0.88 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.012,0.106,0.882 1|1:1.882:0.009,0.1,0.891 1|1:1.864:0.009,0.117,0.873 1|1:1.985:0,0.015,0.985 1|1:1.764:0.019,0.198,0.783 0|0:0:1,0,0 1|1:1.869:0.012,0.108,0.88 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.716:0.021,0.241,0.737 1|1:1.798:0.02,0.162,0.818 1|1:2:0,0,1 1|1:1.592:0.064,0.28,0.656 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 16976839 SNP-3.16975712. A G . PASS AR2=0.999;DR2=0.999;AF=0.437 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.011,0.143,0.846 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0,0.037,0.963 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16978308 SNP-3.16977181. A G . PASS AR2=0.942;DR2=0.954;AF=0.383 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.541:0.061,0.338,0.601 0|0:0:1,0,0 1|1:1.613:0.038,0.31,0.651 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.667:0.028,0.277,0.695 0|0:0:1,0,0 1|1:1.713:0.021,0.245,0.734 1|1:2:0,0,1 1|1:1.675:0.027,0.272,0.701 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.619:0.037,0.307,0.656 0|0:0.067:0.939,0.056,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.621:0.036,0.306,0.657 1|1:1.861:0.005,0.129,0.866 1|1:2:0,0,1 1|1:1.854:0.006,0.135,0.86 1|1:1.706:0.023,0.249,0.728 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.865:0.006,0.123,0.871 0|0:0:1,0,0 1|1:1.926:0.002,0.071,0.928 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.574:0.048,0.33,0.622 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.006,0.153,0.841 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.577:0.05,0.324,0.626 1|1:1.269:0.15,0.431,0.419 1|1:1.795:0.012,0.18,0.807 1|1:1.705:0.024,0.247,0.729 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.005,0.077,0.917 0|1:1.503:0.053,0.39,0.556 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.964:0.066,0.903,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.688:0.027,0.258,0.715 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.861:0.005,0.129,0.866 1|1:1.674:0.027,0.271,0.702 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.699:0.025,0.25,0.725 0|0:0:1,0,0 1|0:1.226:0.154,0.466,0.38 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.604:0.033,0.331,0.636 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.694:0.025,0.256,0.719 1|1:1.69:0.023,0.264,0.713 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.715:0.02,0.246,0.734 1|1:2:0,0,1 1|1:1.676:0.029,0.267,0.705 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.348:0.092,0.468,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.547:0.06,0.334,0.606 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.207:0.188,0.418,0.395 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.226:0.154,0.466,0.38 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16978380 SNP-3.16977253. A G . PASS AR2=0.882;DR2=0.911;AF=0.39 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.014,0.13,0.855 0|0:0:1,0,0 1|1:1.627:0.043,0.287,0.67 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.373:0.087,0.453,0.46 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.897:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0.48:0.56,0.401,0.039 0|0:0:1,0,0 1|1:1.757:0.016,0.21,0.773 0|0:0:1,0,0 0|0:0.487:0.577,0.359,0.064 1|1:1.789:0.01,0.19,0.799 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.725:0.018,0.239,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.277:0.749,0.225,0.026 0|0:0:1,0,0 1|1:1.698:0.025,0.252,0.723 1|1:2:0,0,1 1|0:0.905:0.259,0.576,0.165 0|0:0:1,0,0 1|1:1.336:0.108,0.447,0.444 1|1:1.83:0.017,0.137,0.847 0|0:0:1,0,0 1|1:1.841:0.009,0.141,0.85 1|1:1.546:0.049,0.356,0.595 1|1:2:0,0,1 1|0:1.346:0.111,0.432,0.457 0|0:0:1,0,0 1|0:1.416:0.086,0.412,0.502 1|0:1.16:0.177,0.487,0.337 0|0:0:1,0,0 1|1:1.511:0.037,0.415,0.548 1|1:1.401:0.101,0.397,0.502 0|0:0:1,0,0 1|0:0.64:0.396,0.567,0.037 0|0:0:1,0,0 0|0:1.125:0.191,0.492,0.316 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 1|1:1.169:0.173,0.484,0.342 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.002,0.248,0.75 0|0:0.409:0.631,0.328,0.041 1|1:1.843:0.007,0.143,0.85 1|1:2:0,0,1 1|1:1.538:0.063,0.337,0.601 1|0:1.029:0.07,0.832,0.098 1|1:1.459:0.091,0.359,0.55 0|1:1.182:0.168,0.482,0.35 1|1:2:0,0,1 1|1:1.713:0.03,0.226,0.743 1|1:1.839:0.011,0.139,0.85 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.029,0.181,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.042,0.148,0.81 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.729:0.303,0.665,0.032 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0.001,0.021,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.002,0.084,0.914 0|0:0.307:0.721,0.251,0.028 1|1:1.935:0.005,0.056,0.939 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.056,0.943 1|1:1.141:0.183,0.493,0.324 1|1:2:0,0,1 1|1:1.975:0.001,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.948 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.615:0.473,0.439,0.088 0|0:0.413:0.645,0.297,0.058 0|0:0.348:0.679,0.294,0.027 0|0:0:1,0,0 0|0:0.182:0.823,0.173,0.005 1|1:2:0,0,1 1|1:1.866:0.003,0.128,0.869 1|1:1.804:0.01,0.176,0.814 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.43:0.042,0.486,0.472 0|1:0.856:0.327,0.49,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.02,0.188,0.791 1|1:1.893:0.003,0.102,0.896 1|0:1.323:0.022,0.633,0.345 1|1:2:0,0,1 1|1:1.877:0.004,0.115,0.881 1|0:1.419:0.027,0.527,0.446 0|0:0.462:0.578,0.382,0.04 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.456:0.075,0.395,0.53 1|1:2:0,0,1 0|1:0.638:0.408,0.547,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.057:0.236,0.471,0.293 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.601:0.499,0.4,0.101 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.651:0.025,0.299,0.676 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.431:0.082,0.406,0.513 1|1:1.839:0.011,0.139,0.85 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.011,0.142,0.847 1|1:1.832:0.011,0.145,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.368:0.688,0.256,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.467:0.072,0.39,0.538 0|0:0:1,0,0 1|1:1.543:0.062,0.333,0.605 0|0:0:1,0,0 1|1:2:0,0,1 +3 16991576 SNP-3.16990449. C A . PASS AR2=0.998;DR2=0.998;AF=0.363 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:1.949:0,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.961 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 1|1:1.928:0,0.071,0.928 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0,0.081,0.919 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16993049 SNP-3.16991922. C A . PASS AR2=0.989;DR2=0.991;AF=0.352 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.243:0.774,0.209,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0.003,0.1,0.897 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.005,0.153,0.842 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.291:0.709,0.291,0 1|1:2:0,0,1 1|1:1.87:0.004,0.121,0.875 1|1:1.867:0.004,0.126,0.87 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.939:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.002,0.095,0.902 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.005,0.139,0.856 1|1:1.864:0.005,0.126,0.869 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.124,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.64:0.021,0.319,0.66 1|1:2:0,0,1 1|1:1.875:0.005,0.115,0.88 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16993369 SNP-3.16992242. C A . PASS AR2=0.997;DR2=0.997;AF=0.359 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.025,0.298,0.677 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.003,0.118,0.879 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.001,0.072,0.927 1|1:2:0,0,1 1|1:1.86:0,0.139,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 16994927 SNP-3.16993800. A G . PASS AR2=1;DR2=1;AF=0.453 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 16998202 SNP-3.16997075. A G . PASS AR2=0.997;DR2=0.998;AF=0.483 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.398:0.605,0.393,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.01,0.171,0.818 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17000857 SNP-3.16999730. A G . PASS AR2=1;DR2=1;AF=0.27 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.018:0.024,0.933,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17003965 SNP-3.17002838. A G . PASS AR2=0.905;DR2=0.915;AF=0.288 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.452:0.087,0.375,0.538 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.944:0.279,0.498,0.223 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.943:0.28,0.498,0.222 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1.104:0.201,0.495,0.304 1|1:2:0,0,1 0|0:0.451:0.604,0.341,0.055 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.261:0.137,0.466,0.398 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.896:0.305,0.493,0.201 0|1:0.99:0.253,0.505,0.243 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.929:0.286,0.498,0.216 1|1:2:0,0,1 1|0:0.923:0.291,0.496,0.214 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.917:0.293,0.497,0.21 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.277:0.742,0.238,0.02 1|1:2:0,0,1 1|0:0.892:0.308,0.493,0.2 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.911:0.003,0.082,0.914 0|1:0.928:0.286,0.5,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.9:0.303,0.494,0.203 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.54:0.062,0.335,0.602 0|0:0.277:0.742,0.238,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.944:0.277,0.502,0.221 0|0:0.901:0.304,0.49,0.205 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.901:0.304,0.49,0.205 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.886:0.31,0.495,0.196 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.927:0.286,0.5,0.214 1|0:0.825:0.348,0.479,0.173 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.909:0.3,0.492,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.893:0.307,0.493,0.2 0|0:0:1,0,0 0|1:0.939:0.28,0.501,0.219 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.834:0.342,0.482,0.176 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.839:0.341,0.48,0.179 1|1:1.237:0.148,0.467,0.385 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.477:0.078,0.368,0.555 1|0:0.893:0.307,0.493,0.2 1|1:1.911:0.003,0.083,0.914 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.872:0.319,0.491,0.191 1|1:2:0,0,1 1|1:1.906:0.003,0.088,0.909 1|1:1.9:0.004,0.092,0.904 1|0:0.892:0.308,0.493,0.199 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0.25:0.802,0.146,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.356:0.121,0.402,0.477 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17006312 SNP-3.17005185. A G . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17006838 SNP-3.17005711. A G . PASS AR2=0.901;DR2=0.928;AF=0.411 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.933:0.313,0.44,0.246 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.021,0.247,0.732 1|0:1:0,1,0 1|1:1.721:0.02,0.24,0.74 0|0:0:1,0,0 0|1:1.504:0.062,0.372,0.566 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.016,0.21,0.774 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.83:0.008,0.154,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.717:0.006,0.271,0.723 1|1:2:0,0,1 1|0:1.467:0.072,0.389,0.539 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.468:0.588,0.357,0.055 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.431:0.616,0.337,0.047 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.261:0.769,0.201,0.03 0|0:0:1,0,0 1|0:0.429:0.618,0.336,0.046 0|0:0:1,0,0 0|0:0.431:0.616,0.337,0.047 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.431:0.616,0.337,0.047 0|0:0.4:0.642,0.315,0.043 1|1:2:0,0,1 0|0:0.4:0.642,0.315,0.043 1|0:0.468:0.588,0.357,0.055 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.398:0.644,0.314,0.042 1|0:1:0,1,0 1|1:1.467:0.072,0.389,0.539 0|0:0:1,0,0 0|0:0.431:0.616,0.337,0.047 1|1:1.467:0.072,0.389,0.539 1|1:1.467:0.072,0.389,0.539 1|1:1.995:0,0.005,0.995 0|1:1:0,1,0 0|0:0.4:0.642,0.315,0.043 0|0:0:1,0,0 0|0:0.296:0.734,0.235,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.4:0.642,0.315,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.432:0.615,0.338,0.047 0|0:0:1,0,0 0|0:0.396:0.646,0.313,0.042 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.468:0.588,0.357,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.009,0.166,0.825 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.214:0.814,0.158,0.028 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.704:0.012,0.272,0.716 0|0:0.398:0.644,0.314,0.042 0|0:0.468:0.588,0.357,0.055 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.467:0.072,0.389,0.539 1|1:1.872:0.005,0.119,0.876 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.723:0.02,0.238,0.743 1|1:1.715:0.02,0.246,0.735 1|1:2:0,0,1 1|1:1.723:0.02,0.238,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.596:0.042,0.321,0.638 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.432:0.615,0.338,0.047 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.693:0.026,0.254,0.72 1|1:2:0,0,1 1|1:1.752:0.016,0.216,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.432:0.615,0.338,0.047 1|1:1.985:0,0.015,0.985 0|0:0.468:0.588,0.357,0.055 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.431:0.616,0.337,0.047 0|0:0.269:0.761,0.209,0.03 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.815,0.157,0.028 1|1:1.959:0.001,0.04,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.004,0.091,0.905 0|0:0.4:0.642,0.315,0.043 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.4:0.642,0.315,0.043 +3 17006865 SNP-3.17005738. A G . PASS AR2=0.999;DR2=0.999;AF=0.379 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.003,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17006874 SNP-3.17005747. A G . PASS AR2=1;DR2=1;AF=0.445 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17011979 SNP-3.17010852. C A . PASS AR2=0.97;DR2=0.98;AF=0.445 GT:DS:GP 1|1:1.955:0.002,0.04,0.957 1|1:1.326:0.116,0.441,0.443 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.327:0.116,0.441,0.443 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.278:0,0.722,0.278 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.66:0.019,0.301,0.68 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.492:0.043,0.422,0.535 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.735:0.021,0.222,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.446:0.029,0.496,0.475 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:1.505:0.03,0.434,0.536 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.473:0.002,0.523,0.475 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.808:0.001,0.19,0.809 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.574:0.046,0.335,0.619 1|1:1.846:0.001,0.151,0.848 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.001,0.136,0.863 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.825:0.001,0.174,0.825 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.866:0.006,0.122,0.872 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.75:0.018,0.214,0.768 0|0:0:1,0,0 1|1:1.767:0.015,0.203,0.782 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.012,0.203,0.784 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.003,0.06,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.869:0.005,0.122,0.873 0|0:0:1,0,0 1|1:1.813:0.007,0.172,0.821 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 17012377 SNP-3.17011250. C A . PASS AR2=0.974;DR2=0.98;AF=0.441 GT:DS:GP 1|1:1.889:0.008,0.096,0.896 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.727:0.02,0.233,0.747 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.962:0.038,0.962,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.582:0.036,0.346,0.618 1|1:2:0,0,1 1|1:1.359:0.061,0.518,0.42 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.057:0.216,0.511,0.273 1|1:1.594:0.05,0.307,0.644 1|1:2:0,0,1 1|1:1.675:0.026,0.274,0.7 1|1:2:0,0,1 1|1:1.552:0.041,0.366,0.593 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.013,0.204,0.783 0|0:0:1,0,0 1|1:1.594:0.037,0.332,0.631 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.536:0.039,0.386,0.575 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.094:0.081,0.743,0.176 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.773:0.022,0.184,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0.016,0.202,0.782 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.546:0.034,0.386,0.58 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.782:0.008,0.202,0.79 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.767:0.013,0.207,0.78 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17013438 SNP-3.17012311. C A . PASS AR2=1;DR2=1;AF=0.376 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17013512 SNP-3.17012385. A G . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17013703 SNP-3.17012576. C A . PASS AR2=0.981;DR2=0.986;AF=0.327 GT:DS:GP 1|1:2:0,0,1 0|0:0.039:0.962,0.037,0.001 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|1:1.12:0.144,0.593,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.01,0.166,0.824 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.494:0.039,0.429,0.533 0|0:0:1,0,0 0|0:0.628:0.496,0.381,0.123 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:1.111:0.192,0.505,0.303 1|1:1.745:0.008,0.238,0.754 1|1:2:0,0,1 0|1:1.653:0.005,0.338,0.657 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.661:0.027,0.285,0.688 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.004,0.145,0.851 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17015006 SNP-3.17013879. A G . PASS AR2=0.866;DR2=0.884;AF=0.298 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.884:0.293,0.53,0.177 0|0:0:1,0,0 0|0:0.788:0.371,0.471,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.81:0.354,0.482,0.164 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.806:0.356,0.481,0.163 0|0:0:1,0,0 0|0:0.374:0.663,0.3,0.037 0|1:0.919:0.293,0.496,0.212 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.921:0.003,0.074,0.923 1|1:1.921:0.003,0.074,0.923 0|0:0:1,0,0 0|0:0.791:0.368,0.474,0.159 0|1:0.791:0.368,0.474,0.159 0|0:0:1,0,0 0|0:0.791:0.368,0.474,0.159 1|0:0.791:0.368,0.474,0.159 0|0:0.791:0.368,0.473,0.159 0|1:1.252:0.154,0.441,0.406 1|1:1.742:0.028,0.202,0.77 0|0:0.121:0.894,0.091,0.015 0|0:0:1,0,0 1|0:0.791:0.368,0.474,0.159 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.791:0.368,0.474,0.159 0|0:0:1,0,0 1|0:0.791:0.368,0.474,0.159 0|1:1.295:0.109,0.486,0.404 0|0:0.791:0.368,0.474,0.159 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.791:0.368,0.474,0.159 1|1:1.524:0.049,0.378,0.573 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.003,0.074,0.923 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.791:0.368,0.474,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.791:0.368,0.474,0.159 0|0:0:1,0,0 1|0:0.791:0.368,0.474,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.856:0.325,0.494,0.181 1|1:2:0,0,1 0|1:0.863:0.324,0.488,0.188 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.056:0.192,0.56,0.248 1|1:2:0,0,1 0|0:0.398:0.643,0.315,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.806:0.357,0.481,0.163 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.368:0.668,0.295,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.379:0.111,0.4,0.489 0|0:0:1,0,0 0|1:0.791:0.368,0.474,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.266:0.125,0.485,0.39 0|0:0.859:0.326,0.488,0.186 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.937:0.285,0.494,0.222 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.791:0.368,0.474,0.159 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.791:0.368,0.474,0.159 1|1:1.921:0.003,0.074,0.923 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.753:0.39,0.466,0.144 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.791:0.368,0.474,0.159 1|1:2:0,0,1 0|0:0.791:0.368,0.474,0.159 0|1:1.243:0.146,0.465,0.389 0|0:0:1,0,0 0|1:1.262:0.136,0.466,0.398 1|1:2:0,0,1 1|1:1.327:0.119,0.435,0.446 0|1:1.337:0.117,0.429,0.454 1|1:2:0,0,1 0|0:0.791:0.368,0.474,0.159 1|1:1.612:0.046,0.297,0.657 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.608:0.046,0.299,0.655 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.74:0.398,0.463,0.139 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.302:0.126,0.446,0.428 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17019074 SNP-3.17017947. A G . PASS AR2=0.938;DR2=0.953;AF=0.389 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.589:0.043,0.325,0.632 0|0:0:1,0,0 1|0:0.983:0.259,0.498,0.242 0|0:0:1,0,0 1|1:1.403:0.089,0.418,0.492 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.384:0.096,0.424,0.48 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.86:0.326,0.489,0.186 1|1:1.589:0.043,0.325,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.863:0.324,0.489,0.187 1|1:2:0,0,1 1|1:0.877:0.317,0.49,0.193 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.072:0.022,0.883,0.095 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.656:0.033,0.279,0.689 1|1:2:0,0,1 1|1:1.897:0.002,0.099,0.899 1|1:2:0,0,1 1|0:0.901:0.099,0.901,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.642:0.034,0.289,0.677 1|1:1.553:0.049,0.349,0.602 0|0:0:1,0,0 0|1:1.204:0.16,0.476,0.364 1|1:1.967:0.001,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.592:0.039,0.329,0.631 1|0:1.384:0.095,0.425,0.48 1|1:1.609:0.039,0.312,0.648 1|1:1.373:0.093,0.44,0.467 0|0:0:1,0,0 1|1:1.608:0.039,0.313,0.647 0|0:0:1,0,0 1|1:1.656:0.033,0.279,0.689 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.211:0.158,0.474,0.368 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.496:0.07,0.364,0.566 1|1:1.613:0.039,0.31,0.651 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.075:0.234,0.456,0.309 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.572:0.046,0.335,0.619 1|0:1.545:0.053,0.35,0.598 1|1:1.609:0.039,0.313,0.648 1|1:2:0,0,1 1|1:1.589:0.043,0.325,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.007,0.105,0.888 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.535:0.065,0.335,0.6 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17019476 SNP-3.17018349. A G . PASS AR2=0.998;DR2=0.999;AF=0.481 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.485:0.575,0.365,0.06 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17020461 SNP-3.17019334. C A . PASS AR2=1;DR2=1;AF=0.372 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17022129 SNP-3.17021002. C A . PASS AR2=0.987;DR2=0.991;AF=0.297 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.81:0.316,0.559,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.006,0.139,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.577:0.507,0.409,0.084 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.51:0.022,0.447,0.531 1|1:2:0,0,1 1|0:1.303:0.001,0.694,0.304 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.696:0.017,0.271,0.713 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17023931 SNP-3.17022804. A G . PASS AR2=0.947;DR2=0.965;AF=0.511 GT:DS:GP 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.971 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.75:0.018,0.214,0.768 1|1:1.524:0.057,0.362,0.581 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.573:0.046,0.335,0.619 1|0:1:0,1,0 1|1:1.481:0.065,0.389,0.546 1|1:2:0,0,1 1|1:1.363:0.166,0.304,0.53 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.282:0.114,0.489,0.397 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0.014:0.987,0.013,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.573:0.046,0.335,0.619 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.573:0.046,0.335,0.619 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.573:0.046,0.335,0.619 0|0:0:1,0,0 1|1:1.584:0.043,0.329,0.628 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.574:0.046,0.335,0.619 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.583:0.035,0.348,0.618 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.401:0.092,0.414,0.493 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.574:0.046,0.335,0.62 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.573:0.046,0.335,0.619 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.574:0.046,0.335,0.619 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.403:0.092,0.413,0.495 0|1:1:0,1,0 1|1:1.421:0.086,0.407,0.507 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.409:0.09,0.412,0.498 1|0:1.408:0.09,0.412,0.498 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 0|0:0.009:0.991,0.009,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.573:0.046,0.335,0.619 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 +3 17027034 SNP-3.17025907. A G . PASS AR2=0.952;DR2=0.961;AF=0.33 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.812:0.009,0.17,0.821 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.216:0.062,0.66,0.278 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.832:0.008,0.152,0.84 1|1:1.825:0.008,0.159,0.833 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.089:0.913,0.084,0.003 0|0:0:1,0,0 0|0:0.317:0.708,0.267,0.025 1|1:2:0,0,1 0|0:0.318:0.708,0.267,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.708,0.267,0.025 0|0:0.29:0.731,0.247,0.022 0|0:0.318:0.708,0.267,0.025 1|0:1:0,1,0 0|0:0.318:0.708,0.267,0.025 1|0:1:0,1,0 0|0:0.318:0.708,0.267,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.505:0.013,0.469,0.518 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.852,0.141,0.008 0|0:0:1,0,0 0|0:0.087:0.915,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.914:0.098,0.889,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.318:0.708,0.267,0.025 0|0:0:1,0,0 0|0:0.318:0.708,0.267,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.809:0.009,0.172,0.819 1|1:1.838:0.008,0.146,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.008,0.149,0.843 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.894,0.103,0.003 0|0:0.157:0.85,0.143,0.007 1|1:1.832:0.008,0.152,0.84 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.827:0.008,0.157,0.835 1|1:1.827:0.008,0.157,0.835 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.791:0.01,0.188,0.801 1|1:1.815:0.009,0.167,0.824 1|1:1.792:0.01,0.187,0.802 1|1:2:0,0,1 1|1:1.829:0.008,0.155,0.837 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.817:0.009,0.166,0.826 1|1:2:0,0,1 0|0:0.318:0.708,0.267,0.025 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.82:0.008,0.163,0.829 1|1:1.831:0.008,0.153,0.839 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.008,0.152,0.84 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.008,0.152,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.744:0.043,0.17,0.787 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.708,0.267,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.708,0.267,0.025 +3 17032121 SNP-3.17030994. A G . PASS AR2=0.802;DR2=0.868;AF=0.405 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.403:0.089,0.419,0.492 0|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.41:0.087,0.416,0.497 0|0:0:1,0,0 0|1:1.41:0.087,0.416,0.497 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.41:0.087,0.416,0.497 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.41:0.087,0.416,0.497 1|1:2:0,0,1 1|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.36:0.102,0.437,0.462 1|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 1|1:1.406:0.088,0.417,0.494 0|1:1.076:0.255,0.414,0.331 1|1:2:0,0,1 1|1:1.88:0.001,0.118,0.881 1|0:0.928:0.289,0.493,0.218 0|1:0.77:0.371,0.488,0.141 1|0:0.857:0.329,0.485,0.186 1|1:1.952:0,0.047,0.952 1|1:2:0,0,1 0|0:0.602:0.49,0.418,0.092 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.602:0.49,0.418,0.092 0|0:0.603:0.489,0.419,0.092 1|1:1.868:0.004,0.123,0.872 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.602:0.49,0.418,0.092 1|1:2:0,0,1 0|0:0.641:0.464,0.432,0.104 0|0:0.603:0.489,0.419,0.092 0|0:0:1,0,0 1|0:0.602:0.49,0.418,0.092 1|1:1.834:0.003,0.161,0.836 1|0:0.602:0.49,0.418,0.092 1|1:2:0,0,1 0|1:1.006:0.251,0.493,0.256 0|0:0:1,0,0 0|0:0.746:0.386,0.481,0.132 1|1:2:0,0,1 0|0:0.602:0.49,0.418,0.092 1|1:1.928:0.001,0.07,0.929 1|1:2:0,0,1 1|1:1.522:0.037,0.405,0.559 0|1:0.602:0.49,0.418,0.092 0|0:0:1,0,0 0|1:0.854:0.33,0.485,0.185 1|1:1.992:0,0.008,0.992 0|1:0.602:0.49,0.418,0.092 0|0:0.602:0.49,0.418,0.092 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.854:0.33,0.485,0.185 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.364:0.72,0.196,0.084 0|0:0:1,0,0 0|0:0.602:0.49,0.418,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.066,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.602:0.49,0.418,0.092 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.311:0.732,0.225,0.043 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.602:0.49,0.419,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.409:0.087,0.416,0.497 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.602:0.49,0.418,0.092 0|0:0:1,0,0 1|1:1.091:0.286,0.338,0.377 1|1:1.875:0,0.125,0.875 0|1:0.852:0.332,0.484,0.184 1|0:1.408:0.088,0.417,0.496 0|0:0:1,0,0 0|0:0.411:0.632,0.325,0.043 0|0:0:1,0,0 1|1:1.406:0.088,0.417,0.495 1|1:1.406:0.088,0.417,0.495 1|1:2:0,0,1 1|1:1.41:0.087,0.416,0.497 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.407:0.088,0.417,0.495 0|1:1.36:0.102,0.437,0.462 1|1:2:0,0,1 0|1:0.784:0.374,0.469,0.158 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.602:0.49,0.418,0.092 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.404:0.089,0.418,0.493 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.409:0.087,0.416,0.496 1|1:1.36:0.102,0.437,0.462 0|0:0:1,0,0 0|1:1.408:0.088,0.417,0.495 1|1:1.954:0.003,0.041,0.957 0|0:0.72:0.404,0.472,0.124 0|0:0.602:0.49,0.418,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.854:0.33,0.485,0.185 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 1|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 0|1:1.41:0.087,0.416,0.497 1|1:2:0,0,1 0|1:1.389:0.093,0.424,0.482 1|1:1.999:0,0.001,0.999 0|0:0.602:0.49,0.418,0.092 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.602:0.49,0.418,0.092 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.41:0.087,0.416,0.497 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.602:0.49,0.418,0.092 +3 17032918 SNP-3.17031791. C A . 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A G . PASS AR2=0.973;DR2=0.98;AF=0.381 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.466:0.04,0.454,0.506 0|0:0:1,0,0 1|0:0.494:0.517,0.471,0.012 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.725:0.398,0.48,0.122 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.581:0.001,0.418,0.582 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.992:0.008,0.992,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.881,0.117,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.906,0.079,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.776,0.21,0.014 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.014:0.986,0.014,0 0|0:0.139:0.866,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.138:0.867,0.127,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.181:0.832,0.155,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.343:0.685,0.287,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.754,0.229,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.546:0.544,0.365,0.09 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.26:0.757,0.226,0.017 0|0:0.259:0.758,0.225,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.92,0.075,0.005 1|1:1.766:0.013,0.209,0.779 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17035092 SNP-3.17033965. C A . PASS AR2=0.989;DR2=0.993;AF=0.316 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.051,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.515:0.013,0.46,0.527 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.541:0.01,0.438,0.552 0|0:0:1,0,0 1|1:1.788:0.008,0.195,0.796 0|1:1:0,1,0 1|1:1.796:0.009,0.186,0.805 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.964 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0,0.045,0.954 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.084:0.019,0.877,0.104 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.498:0.02,0.462,0.518 0|0:0:1,0,0 +3 17035251 SNP-3.17034124. C A . PASS AR2=0.988;DR2=0.991;AF=0.404 GT:DS:GP 0|0:0:1,0,0 0|0:0.438:0.578,0.406,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.552,0.447,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.458:0.626,0.29,0.084 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.78,0.189,0.032 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.122:0.882,0.114,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17035826 SNP-3.17034699. A G . PASS AR2=0.968;DR2=0.975;AF=0.224 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.448:0.573,0.406,0.021 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.655:0.03,0.285,0.685 0|1:1.141:0.125,0.609,0.266 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.684:0.025,0.267,0.708 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.655:0.03,0.285,0.685 1|1:2:0,0,1 1|1:1.655:0.03,0.285,0.685 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.847:0.168,0.817,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.684:0.025,0.267,0.708 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.656:0.03,0.284,0.686 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.659:0.029,0.282,0.688 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.655:0.03,0.285,0.685 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.655:0.03,0.285,0.685 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.712:0.023,0.241,0.736 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17035928 SNP-3.17034801. A G . PASS AR2=0.995;DR2=0.997;AF=0.257 GT:DS:GP 0|0:0:1,0,0 1|0:0.579:0.421,0.578,0.001 0|0:0.426:0.576,0.422,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.994:0.018,0.969,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17036502 SNP-3.17035375. C A . PASS AR2=0.988;DR2=0.99;AF=0.36 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.294:0.728,0.249,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.784:0.388,0.439,0.173 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.047,0.325,0.627 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.789:0.005,0.2,0.794 1|1:1.826:0.002,0.17,0.828 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.283:0.719,0.278,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.719:0.415,0.45,0.134 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17036731 SNP-3.17035604. A G . PASS AR2=0.886;DR2=0.896;AF=0.267 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.072:0.262,0.404,0.334 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.834:0.34,0.486,0.174 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.834:0.34,0.486,0.174 0|0:0.834:0.34,0.486,0.174 0|0:0:1,0,0 0|1:0.834:0.34,0.486,0.174 0|1:1:0,1,0 0|1:0.834:0.34,0.486,0.174 0|0:0:1,0,0 0|1:0.864:0.322,0.491,0.186 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.415:0.604,0.377,0.019 0|0:0.834:0.34,0.486,0.174 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.834:0.34,0.486,0.174 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.834:0.34,0.486,0.174 1|1:2:0,0,1 1|1:1.894:0,0.106,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.834:0.34,0.486,0.174 1|0:0.834:0.34,0.486,0.174 0|0:0.834:0.34,0.486,0.174 1|0:0.834:0.34,0.486,0.174 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.834:0.34,0.486,0.174 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.834:0.34,0.486,0.174 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.698:0.418,0.466,0.116 0|1:0.753:0.404,0.439,0.157 1|0:0.834:0.34,0.486,0.174 0|1:0.834:0.34,0.486,0.174 0|0:0.836:0.339,0.486,0.175 0|1:0.834:0.34,0.486,0.174 0|1:0.834:0.34,0.486,0.174 1|0:0.834:0.34,0.486,0.174 0|1:0.834:0.34,0.486,0.174 1|0:0.836:0.339,0.486,0.175 0|0:0:1,0,0 0|0:0.834:0.34,0.486,0.174 0|0:0.834:0.34,0.486,0.174 0|1:0.814:0.352,0.483,0.165 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.436:0.567,0.429,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.834:0.34,0.486,0.174 0|0:0:1,0,0 0|0:0.663:0.474,0.388,0.137 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17037461 SNP-3.17036334. A G . PASS AR2=0.991;DR2=0.995;AF=0.321 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.547:0.032,0.39,0.579 1|1:1.539:0.03,0.4,0.57 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.679:0.446,0.43,0.125 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17039258 SNP-3.17038131. C A . PASS AR2=1;DR2=1;AF=0.35 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17041239 SNP-3.17040112. C A . PASS AR2=0.992;DR2=0.996;AF=0.363 GT:DS:GP 0|0:0:1,0,0 0|0:0.615:0.487,0.412,0.101 1|1:1.482:0.022,0.473,0.505 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.707:0.052,0.189,0.759 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17046414 SNP-3.17045287. A G . PASS AR2=0.943;DR2=0.955;AF=0.398 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.014,0.178,0.809 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.691:0.024,0.26,0.715 1|1:1.71:0.021,0.248,0.731 1|1:2:0,0,1 1|1:1.71:0.021,0.248,0.731 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.542:0.046,0.367,0.587 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.71:0.021,0.248,0.731 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.021,0.248,0.731 1|1:1.71:0.021,0.248,0.731 1|1:1.71:0.021,0.248,0.731 1|1:1.71:0.021,0.248,0.731 1|1:1.713:0.021,0.246,0.734 1|1:1.715:0.021,0.244,0.735 1|1:1.727:0.019,0.235,0.746 1|1:1.712:0.021,0.246,0.733 1|1:1.695:0.023,0.259,0.718 0|0:0:1,0,0 0|0:0.069:0.932,0.068,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 0|0:0.374:0.665,0.296,0.039 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.994:0.007,0.991,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 1|1:1.257:0.321,0.1,0.579 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 0|0:0.409:0.637,0.317,0.046 1|1:2:0,0,1 1|1:1.647:0.006,0.34,0.653 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.02:0.005,0.969,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0.001,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.704:0.022,0.252,0.726 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.021,0.248,0.731 0|0:0:1,0,0 1|1:1.71:0.021,0.248,0.731 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.71:0.021,0.248,0.731 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.021,0.248,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.021,0.248,0.731 1|1:1.71:0.021,0.248,0.731 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.021,0.248,0.731 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 1|1:1.711:0.021,0.247,0.732 1|1:1.71:0.021,0.248,0.731 0|0:0:1,0,0 1|1:1.81:0.001,0.189,0.811 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.71:0.021,0.248,0.731 1|1:1.71:0.021,0.248,0.731 0|0:0:1,0,0 1|1:1.713:0.021,0.246,0.734 1|1:1.656:0.029,0.286,0.685 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.761:0.018,0.204,0.779 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.368:0.67,0.293,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.752:0.019,0.209,0.772 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 +3 17056800 SNP-3.17055613ct. A G . PASS AR2=0.901;DR2=0.923;AF=0.398 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.074:0.239,0.449,0.312 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.589:0.481,0.449,0.07 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 0|0:0:1,0,0 1|1:1.803:0.01,0.177,0.813 1|1:1.809:0.01,0.171,0.819 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.298:0.718,0.265,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.628:0.461,0.451,0.088 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.457:0.558,0.427,0.015 0|0:0:1,0,0 0|0:0.291:0.73,0.249,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.226:0.787,0.201,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.74:0.406,0.448,0.146 0|0:0.615:0.553,0.278,0.168 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.064,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.786:0.37,0.474,0.156 0|0:0.164:0.84,0.156,0.004 0|0:0:1,0,0 0|0:0.374:0.657,0.313,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.564:0.508,0.42,0.072 0|0:0.616:0.469,0.446,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.398:0.654,0.295,0.051 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.038:0.091,0.781,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.289:0.732,0.248,0.02 0|0:0.333:0.693,0.28,0.027 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.591:0.497,0.416,0.088 0|0:0:1,0,0 0|0:0.588:0.494,0.424,0.082 0|0:0.439:0.612,0.337,0.051 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.407:0.636,0.32,0.044 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.161:0.844,0.152,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.256:0.763,0.218,0.019 0|0:0:1,0,0 0|0:0.652:0.418,0.511,0.071 0|0:0.171:0.853,0.123,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.303:0.721,0.255,0.024 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 0|1:0.786:0.37,0.474,0.156 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.324:0.703,0.271,0.026 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 1|1:1.655:0.02,0.305,0.675 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.784:0.012,0.192,0.796 1|1:2:0,0,1 1|1:1.801:0.01,0.178,0.811 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.552:0.534,0.379,0.087 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:1.802:0.01,0.178,0.812 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 1|1:1.801:0.01,0.179,0.811 1|1:1.8:0.011,0.179,0.811 0|1:0.786:0.398,0.418,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.322:0.704,0.27,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.786:0.37,0.474,0.156 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 0|0:0:1,0,0 1|1:1.847:0.008,0.137,0.855 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.922,0.075,0.003 0|0:0:1,0,0 0|0:0:1,0,0 +3 17057151 SNP-3.17055964. C A . PASS AR2=0.996;DR2=0.997;AF=0.275 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.689:0.023,0.265,0.712 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.821:0.008,0.164,0.828 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.682:0.024,0.271,0.705 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17057230 SNP-3.17056043. C A . PASS AR2=0.951;DR2=0.964;AF=0.433 GT:DS:GP 0|0:0:1,0,0 0|1:1.491:0.073,0.363,0.564 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.994:0.006,0.994,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.72,0.257,0.024 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.364:0.67,0.296,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.715:0.418,0.45,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.651:0.428,0.493,0.079 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.1:0.902,0.097,0.001 0|0:0:1,0,0 0|0:0.502:0.556,0.386,0.058 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.375:0.685,0.255,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 1|1:2:0,0,1 1|1:1.891:0.004,0.102,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.002,0.091,0.906 1|1:2:0,0,1 0|1:0.904:0.222,0.651,0.127 1|1:2:0,0,1 1|1:1.903:0.002,0.094,0.905 1|1:1.853:0.005,0.138,0.858 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.945,0.053,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 1|1:1.536:0.056,0.351,0.592 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.535:0.057,0.352,0.592 1|1:2:0,0,1 1|1:1.445:0.114,0.327,0.559 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.794:0.355,0.497,0.149 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.682:0.438,0.442,0.12 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.461:0.074,0.392,0.535 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.461:0.556,0.427,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.321:0.723,0.232,0.045 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.635:0.468,0.429,0.103 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.749,0.233,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.313:0.713,0.262,0.026 0|0:0.123:0.881,0.115,0.004 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.293:0.728,0.25,0.022 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0.306:0.717,0.26,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17059410 SNP-3.17058223. C A . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.003,0.079,0.918 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17061585 SNP-3.17060398. A G . PASS AR2=0.925;DR2=0.94;AF=0.444 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.489:0.088,0.335,0.577 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.022:0.243,0.491,0.266 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.12:0.197,0.487,0.317 0|1:1.255:0.135,0.475,0.39 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.835:0.336,0.493,0.171 0|1:0.95:0.268,0.515,0.218 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.671:0.029,0.27,0.7 1|1:1.679:0.027,0.268,0.705 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.772:0.012,0.203,0.785 1|1:1.511:0.083,0.324,0.593 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.734:0.018,0.23,0.752 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|1:0.856:0.144,0.856,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.018,0.235,0.747 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.767:0.014,0.205,0.781 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.426:0.063,0.447,0.489 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.759,0.185,0.056 0|0:0:1,0,0 1|1:1.681:0.025,0.268,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.189:0.824,0.164,0.013 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.757:0.015,0.213,0.772 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.463:0.026,0.485,0.489 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.021:0.244,0.491,0.265 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.784:0.012,0.192,0.796 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.052:0.233,0.482,0.285 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.937:0.288,0.488,0.225 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.724:0.019,0.238,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.073:0.216,0.495,0.289 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.014,0.204,0.782 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.665:0.031,0.272,0.697 1|1:1.34:0.104,0.453,0.443 1|1:1.282:0.161,0.395,0.443 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.484:0.052,0.412,0.536 1|1:2:0,0,1 1|1:1.697:0.024,0.254,0.722 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.015,0.166,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.772:0.013,0.201,0.786 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.771:0.013,0.203,0.784 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.826,0.161,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.64:0.041,0.278,0.681 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17062268 SNP-3.17061081. C A . PASS AR2=0.984;DR2=0.987;AF=0.335 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.005,0.133,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0.001,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 1|1:1.958:0.001,0.04,0.959 1|1:1.96:0.001,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.065,0.933 1|1:1.799:0.004,0.193,0.803 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:1.847:0.004,0.145,0.851 0|0:0:1,0,0 1|1:1.815:0.003,0.178,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:1.925:0.002,0.071,0.927 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:1.947:0.001,0.052,0.948 1|1:1.973:0.001,0.026,0.974 1|1:1.952:0,0.047,0.952 1|1:2:0,0,1 1|1:1.937:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.97 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.952 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.001,0.092,0.907 0|0:0:1,0,0 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.033,0.236,0.73 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.951 1|1:1.977:0.001,0.022,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.704:0.527,0.243,0.231 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.922:0.001,0.077,0.923 0|0:0:1,0,0 1|1:1.96:0.001,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 1|1:1.964:0.001,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0.001,0.028,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17064370 SNP-3.17063183. C A . PASS AR2=0.991;DR2=0.992;AF=0.316 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.906:0.094,0.906,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.856:0.006,0.132,0.862 1|1:2:0,0,1 1|1:1.802:0.009,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.813:0.01,0.167,0.823 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:1.825:0.008,0.158,0.833 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.104,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.883:0.003,0.11,0.886 1|1:1.857:0.007,0.128,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.802:0.024,0.149,0.827 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.003,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17064446 SNP-3.17063259. C A . PASS AR2=0.989;DR2=0.991;AF=0.326 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.688:0.016,0.28,0.704 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.79:0.213,0.784,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.006,0.262,0.731 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.008,0.236,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.124,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.006,0.115,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.904:0.003,0.091,0.907 1|1:1.937:0.001,0.06,0.939 1|1:2:0,0,1 1|1:1.912:0.002,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.929:0.002,0.068,0.93 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.846:0.001,0.153,0.847 1|1:1.997:0,0.003,0.997 1|1:1.946:0.001,0.052,0.947 1|1:1.948:0.001,0.05,0.949 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.024,0.142,0.835 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.95:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.002,0.049,0.949 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17064447 SNP-3.17063260. C A . PASS AR2=0.934;DR2=0.948;AF=0.269 GT:DS:GP 0|0:0:1,0,0 0|0:0.247:0.771,0.211,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.017:0.22,0.543,0.237 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.78:0.012,0.196,0.792 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.803,0.193,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.408:0.08,0.431,0.489 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.012,0.199,0.789 1|1:1.464:0.065,0.406,0.529 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.025,0.247,0.728 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.645:0.036,0.282,0.682 1|1:1.729:0.018,0.235,0.747 0|0:0:1,0,0 1|0:1.215:0.091,0.603,0.306 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.39:0.095,0.421,0.484 0|0:0:1,0,0 1|1:1.75:0.015,0.221,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.387:0.097,0.419,0.484 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.023,0.227,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.943:0.276,0.505,0.219 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.675:0.027,0.272,0.701 1|1:2:0,0,1 1|0:1.198:0.093,0.617,0.291 1|1:1.719:0.021,0.24,0.739 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.756:0.018,0.209,0.774 0|0:0:1,0,0 1|1:1.707:0.02,0.253,0.727 1|1:1.572:0.037,0.355,0.608 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.299:0.122,0.456,0.421 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.488:0.568,0.376,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.608:0.03,0.332,0.638 1|1:1.829:0.009,0.153,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.622:0.035,0.307,0.658 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.723:0.021,0.236,0.743 0|0:0:1,0,0 1|1:1.665:0.039,0.256,0.704 1|0:1.73:0.019,0.233,0.749 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0.002,0.04,0.958 1|1:2:0,0,1 1|1:1.754:0.016,0.213,0.771 1|1:1.737:0.019,0.224,0.756 1|1:2:0,0,1 1|1:1.801:0.014,0.172,0.815 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17064676 SNP-3.17063489. C A . PASS AR2=0.942;DR2=0.957;AF=0.279 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.009,0.155,0.837 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.12:0.182,0.515,0.303 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.502:0.056,0.387,0.558 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.012,0.163,0.825 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.516:0.056,0.373,0.571 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.852:0.006,0.136,0.858 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.745:0.02,0.215,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.924:0.239,0.597,0.163 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.486:0.061,0.393,0.547 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.536:0.539,0.386,0.075 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.493:0.062,0.382,0.555 1|1:2:0,0,1 0|0:0.502:0.576,0.346,0.078 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.005,0.136,0.859 1|1:1.87:0.006,0.119,0.876 0|0:0:1,0,0 0|0:0.439:0.622,0.317,0.061 1|1:1.869:0.003,0.124,0.872 1|1:1.741:0.018,0.224,0.759 1|1:1.842:0.006,0.146,0.848 1|0:1:0,1,0 1|1:1.737:0.013,0.236,0.75 0|0:0:1,0,0 0|0:0.694:0.456,0.395,0.149 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.433:0.117,0.332,0.55 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.432:0.074,0.42,0.506 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.01,0.191,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.008,0.165,0.827 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.006,0.143,0.851 1|1:1.753:0.013,0.221,0.766 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.798:0.014,0.174,0.812 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.006,0.152,0.842 1|1:2:0,0,1 1|1:1.717:0.036,0.211,0.753 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.013,0.153,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.124,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.003,0.101,0.897 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17064954 SNP-3.17063767. C A . PASS AR2=0.992;DR2=0.993;AF=0.323 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.004,0.129,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.925 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.278:0.771,0.18,0.049 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.002,0.094,0.904 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.867:0.005,0.124,0.871 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.008,0.155,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.849:0.005,0.142,0.854 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.005,0.153,0.842 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.913:0.001,0.085,0.914 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17065946 SNP-3.17064759. C A . PASS AR2=0.889;DR2=0.914;AF=0.37 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.795:0.012,0.181,0.807 1|1:1.821:0.008,0.163,0.829 0|1:1.221:0.153,0.473,0.374 1|1:1.57:0.044,0.341,0.615 0|0:0:1,0,0 1|1:1.594:0.035,0.336,0.629 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.1:0.9,0.1,0 1|0:0.987:0.254,0.505,0.241 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.465:0.049,0.437,0.514 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.149:0.112,0.627,0.261 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.497:0.054,0.395,0.551 0|0:0.498:0.562,0.378,0.06 1|1:2:0,0,1 1|0:1.384:0.096,0.425,0.48 0|0:0.647:0.468,0.418,0.115 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.01:0.248,0.494,0.258 1|1:1.002:0.242,0.514,0.244 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.359:0.641,0.359,0 1|0:0.927:0.292,0.489,0.219 1|0:0.929:0.291,0.489,0.22 0|0:0:1,0,0 1|0:1.277:0.24,0.243,0.517 0|0:0:1,0,0 0|1:1.076:0.216,0.492,0.292 0|1:0.862:0.324,0.489,0.187 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.593:0.468,0.472,0.061 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.21:0.178,0.433,0.388 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.871:0.322,0.484,0.194 0|0:0:1,0,0 1|1:1.841:0.012,0.134,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.845:0.324,0.507,0.169 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.672:0.445,0.438,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.49:0.041,0.428,0.531 1|1:2:0,0,1 0|0:0.858:0.328,0.485,0.186 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.002,0.057,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.504:0.034,0.428,0.538 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.91:0.301,0.489,0.211 1|1:1.697:0.023,0.258,0.719 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.443:0.079,0.4,0.521 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.179,0.81 1|1:1.765:0.015,0.204,0.781 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.849:0.331,0.49,0.18 1|0:0.93:0.292,0.486,0.222 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.581:0.038,0.344,0.618 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.847:0.335,0.483,0.182 1|1:1.626:0.036,0.302,0.662 0|0:0.922:0.295,0.488,0.217 0|0:0.659:0.46,0.422,0.119 0|0:0:1,0,0 0|0:0.662:0.457,0.424,0.119 1|1:2:0,0,1 1|1:1.588:0.044,0.324,0.632 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.833:0.013,0.141,0.846 1|1:1.701:0.026,0.246,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.603:0.04,0.316,0.643 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.298:0.127,0.448,0.425 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.581:0.044,0.331,0.625 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17066399 SNP-3.17065212. A G . PASS AR2=0.974;DR2=0.978;AF=0.511 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.097,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.836:0.006,0.151,0.843 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.67:0.035,0.261,0.704 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.784:0.011,0.194,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.011,0.179,0.811 1|1:1.77:0.013,0.204,0.783 0|0:0:1,0,0 1|1:1.805:0.01,0.174,0.816 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.179,0.809 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.678:0.024,0.274,0.702 1|1:1.805:0.01,0.174,0.816 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.01,0.156,0.834 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.746:0.017,0.219,0.763 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.004,0.106,0.89 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.003,0.099,0.898 1|1:1.905:0.003,0.088,0.908 1|0:1:0,1,0 1|1:1.634:0.039,0.288,0.673 1|1:1.901:0.003,0.093,0.904 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.79:0.009,0.192,0.799 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|1:1.887:0.004,0.106,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.837:0.007,0.149,0.844 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.669:0.036,0.259,0.705 1|1:1.735:0.02,0.226,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.006,0.139,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.097,0.9 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.796:0.011,0.181,0.808 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.011,0.178,0.811 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.007,0.153,0.84 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0.007,0.155,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17067493 SNP-3.17066306. C A . PASS AR2=0.995;DR2=0.996;AF=0.415 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.004,0.084,0.912 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.63:0.052,0.265,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.057:0.944,0.056,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.587:0.106,0.201,0.693 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17069149 SNP-3.17067962. C A . PASS AR2=0.999;DR2=0.999;AF=0.313 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.937:0.063,0.937,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.004,0.107,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17073834 SNP-3.17072647. A G . PASS AR2=0.996;DR2=0.996;AF=0.262 GT:DS:GP 0|0:0.185:0.836,0.143,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.88,0.118,0.002 0|0:0.297:0.734,0.236,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17074874 SNP-3.17073687. C A . PASS AR2=0.992;DR2=0.993;AF=0.424 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.208:0.821,0.15,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.095:0.114,0.676,0.21 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.009,0.084,0.907 1|0:0.999:0.001,0.999,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.469:0.619,0.294,0.088 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0.001,0.036,0.963 0|0:0:1,0,0 1|1:1.659:0.007,0.326,0.667 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0,0.098,0.902 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.849:0.016,0.12,0.865 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17076813 SNP-3.17075626. C A . PASS AR2=0.989;DR2=0.991;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.048:0.053,0.846,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.78:0.262,0.696,0.042 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.7:0.008,0.284,0.708 0|1:0.815:0.233,0.718,0.048 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.947:0,0.052,0.947 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.9:0.003,0.095,0.902 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.578:0.012,0.398,0.59 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.812:0.012,0.163,0.825 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.025,0.191,0.784 0|0:0:1,0,0 +3 17079019 SNP-3.17077832. A G . PASS AR2=1;DR2=1;AF=0.302 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17080712 SNP-3.17079525. A G . PASS AR2=1;DR2=1;AF=0.311 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17080998 SNP-3.17079811. A G . PASS AR2=0.89;DR2=0.928;AF=0.419 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.626:0.473,0.428,0.099 0|0:0:1,0,0 0|0:0.301:0.723,0.253,0.024 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.639:0.463,0.434,0.103 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.67:0.442,0.446,0.112 0|0:0.412:0.61,0.368,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.682:0.435,0.449,0.116 1|0:0.634:0.467,0.433,0.1 0|0:0.601:0.49,0.419,0.091 1|1:2:0,0,1 0|0:0.671:0.443,0.443,0.114 1|0:0.615:0.48,0.424,0.095 1|0:1:0,1,0 0|0:0.479:0.589,0.342,0.069 0|0:0.741:0.398,0.462,0.139 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.609:0.486,0.419,0.095 0|1:0.649:0.456,0.438,0.106 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0.632:0.467,0.434,0.099 0|0:0:1,0,0 0|1:0.656:0.452,0.44,0.108 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.631:0.469,0.43,0.1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.611:0.484,0.42,0.096 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.614:0.481,0.424,0.095 0|0:0:1,0,0 0|0:0.747:0.395,0.464,0.141 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.684:0.433,0.449,0.117 1|1:2:0,0,1 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.198:0.811,0.18,0.009 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.551:0.527,0.394,0.079 0|0:0.68:0.436,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.142:0.865,0.127,0.008 0|0:0.646:0.46,0.435,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.496:0.578,0.349,0.074 0|0:0.711:0.416,0.457,0.127 0|0:0.183:0.826,0.165,0.009 1|0:0.673:0.44,0.446,0.114 0|1:0.637:0.465,0.433,0.102 0|1:0.658:0.45,0.441,0.109 1|0:0.666:0.446,0.441,0.112 1|0:0.746:0.396,0.463,0.141 0|0:0.201:0.809,0.181,0.01 0|0:0.112:0.892,0.105,0.003 0|0:0:1,0,0 0|0:0.657:0.451,0.441,0.108 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.072:0.93,0.069,0.002 1|1:2:0,0,1 0|0:0.201:0.809,0.18,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.607:0.487,0.418,0.094 0|0:0.215:0.797,0.192,0.012 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 1|0:1:0,1,0 +3 17082728 SNP-3.17081541. A G . PASS AR2=0.999;DR2=0.999;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.002,0.079,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17083355 SNP-3.17082168. A G . PASS AR2=0.997;DR2=0.998;AF=0.303 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.683:0.435,0.448,0.118 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17084496 SNP-3.17083309. A G . PASS AR2=0.875;DR2=0.902;AF=0.278 GT:DS:GP 0|0:0.264:0.753,0.23,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.246:0.145,0.465,0.39 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.187:0.165,0.482,0.352 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.361:0.104,0.431,0.465 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.255:0.141,0.464,0.395 1|1:2:0,0,1 0|1:1.369:0.106,0.418,0.475 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.265:0.137,0.462,0.401 1|1:1.414:0.086,0.414,0.5 1|1:1.567:0.063,0.307,0.63 0|0:0:1,0,0 1|1:1.226:0.146,0.483,0.372 0|1:1.229:0.145,0.482,0.373 0|0:0:1,0,0 0|1:1.236:0.15,0.465,0.385 1|1:2:0,0,1 0|1:1.246:0.145,0.465,0.39 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.531:0.477,0.515,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.195:0.812,0.181,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.173:0.836,0.155,0.009 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.423:0.639,0.299,0.062 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.142,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.653:0.05,0.247,0.703 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.139:0.866,0.128,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.898,0.1,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.002 0|0:0.026:0.974,0.025,0 0|0:0.148:0.854,0.144,0.002 0|0:0.176:0.826,0.171,0.003 0|0:0:1,0,0 0|0:0.103:0.899,0.099,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.849,0.15,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.377:0.654,0.316,0.031 0|0:0.16:0.843,0.155,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.317:0.118,0.447,0.435 0|0:0:1,0,0 1|1:1.331:0.108,0.453,0.439 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.259:0.14,0.462,0.399 0|0:0:1,0,0 0|1:1.322:0.115,0.448,0.437 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|0:1.305:0.088,0.52,0.392 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.222:0.15,0.479,0.372 1|1:2:0,0,1 0|1:1.364:0.087,0.462,0.451 1|1:1.236:0.148,0.468,0.384 0|1:1.22:0.156,0.468,0.376 1|1:1.335:0.106,0.452,0.441 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.879,0.119,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.344:0.109,0.439,0.453 0|1:1.178:0.169,0.483,0.347 0|0:0:1,0,0 0|1:1.195:0.155,0.494,0.35 1|1:1.215:0.153,0.479,0.368 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0.254:0.763,0.22,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.658:0.05,0.243,0.707 1|1:1.278:0.13,0.461,0.408 0|0:0:1,0,0 1|0:1.269:0.134,0.463,0.403 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.387:0.095,0.424,0.481 1|1:2:0,0,1 1|1:1.61:0.053,0.284,0.663 1|1:1.399:0.086,0.429,0.485 1|0:1.282:0.102,0.515,0.383 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.881,0.114,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17084825 SNP-3.17083638. A G . PASS AR2=1;DR2=1;AF=0.249 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17085178 SNP-3.17083991. A G . PASS AR2=0.993;DR2=0.995;AF=0.277 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.898,0.097,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.466:0.585,0.363,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.711,0.287,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.121:0.883,0.113,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.099:0.905,0.091,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17086489 SNP-3.17085302. C A . PASS AR2=0.992;DR2=0.993;AF=0.358 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.161:0.846,0.148,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.387:0.641,0.331,0.028 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.001,0.08,0.919 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.918:0.002,0.079,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.829,0.163,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.847:0.009,0.134,0.856 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.147:0.858,0.136,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17086506 SNP-3.17085319. A G . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17089448 SNP-3.17088261. A G . PASS AR2=0.948;DR2=0.959;AF=0.503 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.918:0.002,0.077,0.921 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.813:0.009,0.169,0.822 1|1:1.819:0.008,0.165,0.827 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.823:0.008,0.161,0.831 1|1:1.845:0.006,0.144,0.85 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:1.825:0.008,0.16,0.833 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.837:0.004,0.154,0.842 0|1:0.91:0.19,0.709,0.101 1|1:1.965:0,0.034,0.966 0|0:0:1,0,0 1|1:1.929:0.002,0.068,0.93 1|1:1.835:0.006,0.153,0.841 0|0:0.623:0.407,0.564,0.03 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.57:0.023,0.383,0.593 0|1:1.158:0.086,0.67,0.244 1|1:1.912:0.002,0.085,0.913 1|1:1.83:0.036,0.099,0.865 0|1:0.682:0.318,0.682,0 1|1:1.509:0.058,0.374,0.567 1|0:0.779:0.244,0.732,0.023 0|0:0:1,0,0 0|1:1.012:0.001,0.986,0.013 1|1:1.701:0.026,0.247,0.727 0|0:0.08:0.923,0.074,0.003 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:1.944:0.001,0.054,0.945 1|1:1.772:0.005,0.218,0.777 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.397:0.611,0.381,0.008 1|1:2:0,0,1 0|0:0.068:0.934,0.064,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.618:0.005,0.372,0.623 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 0|1:1.429:0.006,0.559,0.435 0|1:0.844:0.182,0.792,0.026 0|0:0:1,0,0 1|1:1.81:0.009,0.172,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.817:0.009,0.165,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.578:0.433,0.557,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.868,0.13,0.002 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0.071:0.932,0.065,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.009,0.171,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.005,0.108,0.887 1|1:1.827:0.007,0.158,0.835 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.008,0.159,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.818:0.008,0.165,0.826 1|1:1.868:0.004,0.124,0.872 1|1:2:0,0,1 0|0:0.202:0.819,0.159,0.022 1|1:1.938:0.002,0.058,0.94 0|0:0:1,0,0 1|1:1.823:0.008,0.161,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.007,0.153,0.84 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.008,0.158,0.835 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.375:0.095,0.436,0.47 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.233:0.079,0.609,0.312 1|1:1.944:0,0.055,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.009,0.17,0.821 1|1:1.843:0.007,0.143,0.85 1|1:1.813:0.009,0.169,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.01,0.077,0.913 1|1:1.986:0,0.013,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.006,0.125,0.869 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.639:0.478,0.404,0.118 0|0:0:1,0,0 1|0:1:0,1,0 +3 17089753 SNP-3.17088566. C A . PASS AR2=0.995;DR2=0.996;AF=0.374 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.72,0.257,0.023 0|0:0.279:0.739,0.242,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.881,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17090397 SNP-3.17089210. A G . PASS AR2=0.929;DR2=0.945;AF=0.23 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.852,0.143,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.891:0.305,0.498,0.197 1|1:1.35:0.128,0.393,0.478 0|0:0.803:0.358,0.48,0.162 1|1:2:0,0,1 1|1:1.382:0.083,0.451,0.466 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.76:0.386,0.467,0.147 0|0:0.075:0.925,0.075,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.761:0.386,0.467,0.147 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.841:0.292,0.575,0.133 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.65:0.452,0.446,0.102 0|1:1.203:0.144,0.509,0.347 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.904:0.228,0.64,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.816,0.174,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.999:0.001,0.999,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.811,0.178,0.011 0|0:0.13:0.872,0.126,0.002 0|0:0:1,0,0 0|0:0.32:0.691,0.298,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.821,0.171,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.86,0.134,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.788:0.366,0.48,0.154 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.514:0.053,0.381,0.567 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.681:0.032,0.254,0.713 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.932:0.24,0.587,0.173 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.367:0.1,0.433,0.467 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.846,0.149,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.646:0.033,0.289,0.678 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.55:0.033,0.385,0.582 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.542:0.053,0.352,0.595 1|0:0.903:0.303,0.491,0.206 0|0:0:1,0,0 1|1:2:0,0,1 +3 17090472 SNP-3.17089285. C A . 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C A . PASS AR2=0.978;DR2=0.984;AF=0.31 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.451:0.058,0.433,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.625:0.036,0.302,0.661 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.544:0.048,0.36,0.592 1|1:1.87:0.005,0.12,0.875 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.721:0.018,0.244,0.738 0|1:1:0,1,0 1|0:1.381:0.1,0.419,0.481 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.004,0.162,0.834 0|0:0.035:0.965,0.034,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.611:0.031,0.326,0.642 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.848:0.008,0.135,0.857 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.002,0.119,0.879 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.921:0.001,0.076,0.923 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.05,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.654:0.029,0.289,0.683 0|0:0:1,0,0 +3 17092256 SNP-3.17091069. A G . PASS AR2=0.997;DR2=0.997;AF=0.257 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.97:0.045,0.94,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.834:0,0.166,0.834 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.005,0.109,0.886 0|0:0:1,0,0 1|1:2:0,0,1 +3 17092943 SNP-3.17091756. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17097439 SNP-3.17096252. C A . PASS AR2=0.993;DR2=0.994;AF=0.378 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.8,0.198,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.112:0.891,0.107,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.799,0.194,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.843,0.155,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.252:0.771,0.205,0.024 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|1:1:0,1,0 0|0:0.095:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.053:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 1|1:1.955:0,0.044,0.955 0|0:0:1,0,0 +3 17098846 SNP-3.17097659. A G . PASS AR2=1;DR2=1;AF=0.304 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17099351 SNP-3.17098164. A G . PASS AR2=1;DR2=1;AF=0.284 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17099628 SNP-3.17098441. C A . PASS AR2=0.998;DR2=0.999;AF=0.361 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.394:0.606,0.394,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17100185 SNP-3.17098998. A G . PASS AR2=0.949;DR2=0.963;AF=0.452 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.207:0.805,0.184,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.672:0.003,0.322,0.675 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.472:0.003,0.523,0.475 0|0:0:1,0,0 0|1:1.236:0.105,0.553,0.341 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.609:0.486,0.419,0.095 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.6:0.469,0.463,0.069 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.311:0.7,0.289,0.011 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.407:0.631,0.332,0.037 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.461:0.57,0.4,0.031 0|1:0.714:0.397,0.492,0.111 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.794,0.191,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.374:0.665,0.296,0.039 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.261:0.757,0.224,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0,0.063,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0,0.197,0.803 1|1:2:0,0,1 0|0:0.056:0.944,0.055,0.001 0|0:0.322:0.694,0.29,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.197:0.813,0.178,0.01 1|1:1.495:0.075,0.354,0.571 0|1:1.298:0.001,0.7,0.299 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.316:0.705,0.274,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.292:0.139,0.43,0.431 0|0:0:1,0,0 0|0:0.18:0.828,0.164,0.008 1|1:2:0,0,1 0|0:0.083:0.919,0.078,0.002 1|1:2:0,0,1 0|0:0.097:0.905,0.093,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.319:0.703,0.275,0.022 0|0:0.08:0.923,0.075,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.898,0.098,0.004 0|0:0.117:0.887,0.11,0.003 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.402:0.639,0.32,0.041 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.241:0.766,0.227,0.007 0|0:0.044:0.957,0.043,0.001 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.118:0.886,0.11,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.794,0.193,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.042:0.959,0.04,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.711:0.42,0.449,0.131 0|0:0:1,0,0 0|0:0.242:0.768,0.222,0.01 +3 17100860 SNP-3.17099673. A G . PASS AR2=0.997;DR2=0.998;AF=0.236 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.491:0.528,0.452,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17101619 SNP-3.17100432. C A . PASS AR2=0.995;DR2=0.996;AF=0.36 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.972:0.041,0.946,0.013 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.843,0.155,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.819,0.181,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.014,0.231,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.897,0.099,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17102747 SNP-3.17101560. A G . PASS AR2=0.987;DR2=0.991;AF=0.338 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.532:0.057,0.354,0.589 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0.913:0.263,0.561,0.176 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.169:0.834,0.163,0.003 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|1:1.42:0.085,0.41,0.505 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0.008:0.992,0.008,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.478:0.07,0.382,0.548 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17103110 SNP-3.17101923. A G . PASS AR2=0.888;DR2=0.923;AF=0.48 GT:DS:GP 1|0:1:0,1,0 1|1:1.986:0,0.014,0.986 1|1:1.941:0.001,0.056,0.942 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.768:0.015,0.203,0.783 0|1:1.355:0.104,0.437,0.459 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.407:0.087,0.42,0.494 1|0:1:0,1,0 0|1:1.469:0.074,0.382,0.543 1|0:1.351:0.099,0.45,0.451 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.414:0.087,0.412,0.501 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.342:0.11,0.439,0.451 1|1:1.362:0.101,0.435,0.464 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.388:0.095,0.422,0.483 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.311:0.104,0.481,0.415 0|0:0.815:0.518,0.149,0.333 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.284:0.105,0.506,0.389 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.794:0.334,0.538,0.128 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.959 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.865:0.325,0.484,0.191 1|1:1.77:0.015,0.201,0.785 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.717:0.011,0.262,0.728 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.527:0.036,0.402,0.562 1|0:1:0,1,0 0|1:0.723:0.405,0.467,0.128 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.921:0.004,0.072,0.924 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.678:0.017,0.288,0.695 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.335:0.11,0.445,0.445 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.294:0.14,0.426,0.434 1|0:1:0,1,0 1|0:1.311:0.117,0.454,0.429 1|1:1.364:0.101,0.435,0.464 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 0|0:0.345:0.677,0.3,0.023 1|1:1.534:0.058,0.35,0.592 0|0:0:1,0,0 1|1:1.055:0.193,0.558,0.249 0|0:0:1,0,0 1|1:1.629:0.006,0.358,0.636 1|0:1.233:0.139,0.49,0.372 1|1:1.591:0.028,0.354,0.618 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.338:0.085,0.491,0.423 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.384:0.087,0.441,0.471 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.355:0.104,0.438,0.458 1|0:1.414:0.087,0.412,0.501 1|0:1.435:0.084,0.397,0.519 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.436:0.077,0.409,0.514 1|1:1.91:0.002,0.086,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.013,0.19,0.797 1|1:1.958:0.001,0.041,0.959 1|1:1.917:0.004,0.075,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.01,0.126,0.864 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.798:0.012,0.178,0.81 0|0:0.5:0.565,0.369,0.066 1|1:2:0,0,1 0|1:0.972:0.281,0.466,0.253 0|0:0:1,0,0 1|1:2:0,0,1 +3 17106949 SNP-3.17105762. A G . PASS AR2=1;DR2=1;AF=0.304 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17107044 SNP-3.17105857. C A . 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A G . 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A G . PASS AR2=0.992;DR2=0.994;AF=0.283 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.802:0.013,0.172,0.815 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.946 1|1:2:0,0,1 1|1:1.761:0.013,0.212,0.775 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.004,0.137,0.859 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.824:0.005,0.165,0.83 1|0:1:0,1,0 1|1:1.805:0.007,0.182,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.875:0.001,0.123,0.876 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.932 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.854:0.004,0.139,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.002,0.064,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17113483 SNP-3.17112296. A G . 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C A . 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C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17116915 SNP-3.17115728. C A . PASS AR2=0.982;DR2=0.985;AF=0.37 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.022,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.396:0.621,0.361,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.819,0.175,0.006 0|0:0.087:0.916,0.082,0.003 1|1:2:0,0,1 0|0:0.139:0.867,0.128,0.006 0|0:0.095:0.907,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.085:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.849,0.146,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.816,0.175,0.009 0|0:0.205:0.803,0.189,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.937,0.061,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.192:0.817,0.174,0.009 0|0:0.191:0.819,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.027:0.973,0.026,0 0|0:0.019:0.981,0.018,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.849,0.147,0.004 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.885:0.003,0.11,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.443:0.572,0.413,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.003,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.088,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17117693 SNP-3.17116506. C A . PASS AR2=0.967;DR2=0.971;AF=0.389 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.163:0.845,0.147,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.191:0.82,0.169,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.1:0.903,0.095,0.002 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0.114:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.001 0|0:0.049:0.952,0.047,0.001 0|1:1:0,1,0 0|0:0.142:0.863,0.133,0.004 0|0:0:1,0,0 0|0:0.194:0.81,0.186,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.305:0.718,0.259,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.105,0.004 0|0:0:1,0,0 0|0:0.146:0.863,0.128,0.009 0|0:0:1,0,0 0|0:0.264:0.747,0.242,0.011 0|0:0:1,0,0 0|0:0.2:0.812,0.176,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.723,0.263,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.843,0.15,0.007 0|1:1:0,1,0 0|0:0.085:0.918,0.078,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.005,0.17,0.825 1|1:2:0,0,1 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1.001:0.001,0.996,0.003 1|1:2:0,0,1 0|1:1.001:0,0.999,0.001 1|1:1.715:0.006,0.274,0.72 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.118:0.886,0.11,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.242:0.774,0.211,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.273:0.741,0.245,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.185:0.824,0.168,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.001:0,0.999,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.889,0.108,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.116:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.089:0.912,0.087,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.811,0.179,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.002 0|0:0.093:0.909,0.088,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.087,0.002 0|0:0.036:0.964,0.036,0 0|0:0.118:0.885,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.814,0.183,0.003 0|0:0:1,0,0 0|0:0.178:0.827,0.168,0.005 0|0:0.191:0.812,0.185,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.19:0.813,0.184,0.003 0|0:0.078:0.924,0.074,0.002 0|0:0.181:0.828,0.163,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.19:0.813,0.184,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.956,0.043,0.001 0|0:0.11:0.894,0.103,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.238:0.781,0.201,0.019 0|0:0.046:0.954,0.046,0 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 +3 17118886 SNP-3.17117699. C A . PASS AR2=0.998;DR2=0.998;AF=0.352 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.912:0.311,0.465,0.223 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17120131 SNP-3.17118944. A G . PASS AR2=1;DR2=1;AF=0.387 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17120266 SNP-3.17119079. A G . PASS AR2=1;DR2=1;AF=0.313 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17120722 SNP-3.17119535. C A . PASS AR2=0.999;DR2=0.999;AF=0.337 GT:DS:GP 0|0:0.111:0.904,0.081,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.954:0.001,0.044,0.955 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17123162 SNP-3.17121975. A G . PASS AR2=0.973;DR2=0.978;AF=0.319 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.222:0.792,0.195,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.902:0.001,0.096,0.903 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 0|0:0.217:0.788,0.208,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.811,0.179,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.461:0.574,0.391,0.035 0|0:0:1,0,0 0|0:0.058:0.945,0.052,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.759,0.234,0.007 0|1:0.712:0.411,0.467,0.122 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0.044:0.958,0.041,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.495:0.565,0.376,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.827,0.169,0.005 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.28:0.725,0.269,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0.001,0.103,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.921:0.289,0.502,0.21 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.764,0.22,0.017 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0.094:0.909,0.088,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.399:0.64,0.321,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.065,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.781,0.203,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.941,0.056,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.203:0.808,0.181,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17123460 SNP-3.17122273. C A . PASS AR2=0.971;DR2=0.978;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.014,0.24,0.745 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.341:0.112,0.435,0.453 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.003:0.205,0.588,0.207 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.002,0.105,0.892 1|1:2:0,0,1 1|1:1.816:0.011,0.162,0.827 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.888:0.003,0.106,0.891 0|0:0.366:0.675,0.284,0.041 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.667:0.026,0.281,0.693 1|1:1.941:0.001,0.057,0.942 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.004,0.1,0.896 1|1:2:0,0,1 1|1:1.905:0.002,0.091,0.907 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.769:0.007,0.216,0.777 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.63:0.032,0.305,0.662 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.866:0.005,0.124,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.629:0.03,0.312,0.658 0|1:0.798:0.329,0.545,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.078:0.047,0.828,0.125 1|1:2:0,0,1 1|1:1.95:0.001,0.048,0.951 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.342:0.029,0.601,0.371 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.791:0.009,0.191,0.8 0|0:0:1,0,0 +3 17123994 SNP-3.17122807. C A . PASS AR2=0.978;DR2=0.982;AF=0.339 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.679:0.024,0.273,0.703 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.015,0.212,0.773 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.878,0.122,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.022,0.252,0.726 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.022,0.246,0.732 1|1:1.87:0.004,0.123,0.874 1|1:1.742:0.017,0.224,0.759 1|1:1.69:0.023,0.263,0.713 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.008,0.136,0.856 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.001,0.076,0.923 1|1:1.687:0.024,0.266,0.71 1|1:1.756:0.015,0.214,0.771 1|1:1.696:0.019,0.266,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.002,0.069,0.93 1|1:2:0,0,1 1|1:1.726:0.017,0.239,0.743 1|1:1.848:0.004,0.143,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:1.712:0.022,0.244,0.734 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.744:0.016,0.223,0.76 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.002,0.136,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17126152 SNP-3.17124965. C A . PASS AR2=0.996;DR2=0.996;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.942:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.987:0.014,0.985,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.961 1|1:1.968:0.001,0.03,0.969 1|1:1.972:0.001,0.026,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.073,0.926 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.001,0.063,0.936 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.932:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.884:0.003,0.11,0.887 0|0:0:1,0,0 +3 17126775 SNP-3.17125588. A G . PASS AR2=0.991;DR2=0.992;AF=0.391 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.851,0.142,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.779,0.207,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.77,0.215,0.015 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.169:0.834,0.163,0.003 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.218:0.794,0.195,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.839:0.006,0.148,0.846 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.905:0.002,0.091,0.907 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.003,0.108,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.873,0.12,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.858,0.136,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17127527 SNP-3.17126340. C A . PASS AR2=0.994;DR2=0.994;AF=0.322 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.943:0.057,0.943,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.876:0.005,0.115,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.005,0.149,0.846 1|1:1.879:0.004,0.114,0.883 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.005,0.139,0.856 1|1:2:0,0,1 1|1:1.845:0.005,0.146,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.004,0.112,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.881:0.004,0.112,0.885 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.839:0.006,0.148,0.846 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.005,0.1,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17128413 SNP-3.17127226. C A . PASS AR2=0.973;DR2=0.98;AF=0.419 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.808,0.177,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.524:0.554,0.368,0.078 0|0:0.458:0.603,0.335,0.062 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.285:0.731,0.253,0.016 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.002,0.061,0.937 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0,0.079,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0,0.046,0.954 1|0:1:0,1,0 1|1:1.964:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.824:0.349,0.478,0.173 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.332:0.694,0.279,0.027 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.436:0.612,0.34,0.048 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.348:0.684,0.285,0.032 0|0:0:1,0,0 0|1:0.821:0.351,0.478,0.171 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.537:0.54,0.384,0.077 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.264:0.754,0.228,0.018 0|0:0.438:0.611,0.34,0.049 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 +3 17129150 SNP-3.17127963. A G . PASS AR2=1;DR2=1;AF=0.391 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17129302 SNP-3.17128115. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17130280 SNP-3.17129093. C A . PASS AR2=0.96;DR2=0.97;AF=0.409 GT:DS:GP 0|0:0.126:0.878,0.118,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.19:0.822,0.166,0.012 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.584:0.435,0.545,0.019 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.936:0.004,0.057,0.939 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.559:0.464,0.514,0.022 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.731,0.244,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.691,0.284,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0.25:0.765,0.219,0.015 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 1|0:1.127:0.116,0.64,0.243 0|0:0:1,0,0 0|0:0.134:0.87,0.127,0.003 1|0:1:0,1,0 0|0:0.262:0.756,0.226,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.371:0.66,0.309,0.031 0|0:0:1,0,0 0|0:0.375:0.651,0.322,0.027 0|0:0:1,0,0 0|0:0.169:0.841,0.15,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.581:0.04,0.339,0.621 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.003,0.121,0.876 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.339:0.68,0.301,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.755:0.017,0.211,0.772 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.214:0.798,0.189,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.209:0.804,0.183,0.013 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.13:0.876,0.118,0.006 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.238:0.776,0.211,0.013 0|0:0:1,0,0 0|0:0.33:0.681,0.309,0.011 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.259:0.761,0.219,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.879,0.114,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.502:0.615,0.268,0.117 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.52:0.517,0.447,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17131818 SNP-3.17130631. C A . PASS AR2=0.964;DR2=0.973;AF=0.423 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.325:0.701,0.272,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.426:0.62,0.335,0.046 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.473:0.584,0.358,0.058 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.871:0.254,0.62,0.125 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.399:0.637,0.328,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.09:0.91,0.089,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.831:0,0.169,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.35:0.682,0.286,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.328:0.706,0.259,0.034 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.397:0.642,0.318,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.433:0.614,0.338,0.047 1|0:1:0,1,0 0|1:0.801:0.284,0.63,0.086 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.714,0.259,0.027 0|1:1:0,1,0 0|0:0.287:0.732,0.248,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.694,0.277,0.028 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.32:0.708,0.264,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.381:0.653,0.314,0.033 1|0:1:0,1,0 0|0:0.278:0.746,0.231,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.351:0.682,0.286,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.365:0.671,0.294,0.036 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 +3 17131858 SNP-3.17130671. A G . PASS AR2=0.996;DR2=0.997;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.169:0.844,0.144,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.132:0.874,0.12,0.006 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.734,0.245,0.021 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17132905 SNP-3.17131718. C A . PASS AR2=0.984;DR2=0.987;AF=0.422 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.82,0.161,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1.012:0.127,0.733,0.139 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.799,0.195,0.006 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.139:0.864,0.133,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.238:0.773,0.217,0.01 0|1:1:0,1,0 0|0:0.11:0.892,0.107,0.002 1|0:0.786:0.354,0.506,0.14 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.2:0.809,0.181,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.419:0.617,0.348,0.036 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.348:0.685,0.282,0.033 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.885,0.114,0.001 0|0:0:1,0,0 1|1:1.81:0.013,0.163,0.824 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.854,0.138,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17133832 SNP-3.17132645. C A . PASS AR2=0.998;DR2=0.999;AF=0.361 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.698:0,0.302,0.698 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17134497 SNP-3.17133310. A G . PASS AR2=0.928;DR2=0.948;AF=0.311 GT:DS:GP 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0.416:0.663,0.258,0.079 1|1:2:0,0,1 1|1:1.415:0.139,0.306,0.555 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.696:0.019,0.266,0.715 1|1:2:0,0,1 1|1:1.861:0,0.139,0.861 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.618:0.043,0.297,0.66 1|1:2:0,0,1 1|1:1.411:0.091,0.406,0.502 1|1:1.657:0.035,0.272,0.693 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.317:0.123,0.436,0.44 1|1:2:0,0,1 1|1:1.657:0.031,0.281,0.688 1|1:1.688:0.028,0.257,0.715 1|1:1.645:0.034,0.287,0.679 1|1:2:0,0,1 1|0:1.477:0.079,0.366,0.555 1|1:1.68:0.025,0.269,0.706 1|1:1.516:0.059,0.367,0.575 1|1:1.542:0.049,0.36,0.591 0|0:0.085:0.915,0.085,0 0|0:0:1,0,0 1|1:1.573:0.043,0.341,0.616 1|1:1.564:0.024,0.389,0.588 1|1:2:0,0,1 1|1:1.461:0.08,0.379,0.541 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.445:0.076,0.403,0.521 1|1:2:0,0,1 1|1:1.625:0.035,0.304,0.661 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.016,0.236,0.748 1|1:2:0,0,1 1|1:1.447:0.078,0.397,0.525 0|0:0:1,0,0 1|1:1.51:0.062,0.367,0.572 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.716:0.022,0.24,0.738 0|0:0.161:0.843,0.153,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.452:0.078,0.392,0.53 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.537:0.059,0.344,0.597 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.601:0.035,0.329,0.636 1|0:1.437:0.083,0.398,0.519 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.025,0.277,0.698 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:1.677:0.026,0.271,0.703 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.683:0.025,0.266,0.709 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.02,0.237,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17137062 SNP-3.17135875. C A . PASS AR2=0.972;DR2=0.976;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.848,0.151,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.971:0.033,0.962,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:1.909:0.005,0.082,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.938,0.06,0.002 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.096,0.002 0|0:0.027:0.973,0.026,0 0|0:0.065:0.936,0.063,0.001 0|0:0.372:0.636,0.355,0.008 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.889,0.11,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.799:0.362,0.477,0.161 0|0:0.408:0.592,0.408,0 1|0:1:0,1,0 0|1:1.044:0.211,0.534,0.255 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.035:0.227,0.511,0.262 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.267:0.737,0.26,0.004 1|1:1.944:0.001,0.055,0.945 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.005,0.132,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.074:0.928,0.069,0.002 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.371:0.635,0.359,0.006 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.037:0.244,0.475,0.281 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.004,0.148,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.822:0.018,0.142,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.014,0.985 1|1:1.63:0.018,0.333,0.649 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0.032:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17138730 SNP-3.17137543. A G . PASS AR2=0.982;DR2=0.986;AF=0.214 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.003,0.179,0.818 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.9:0.006,0.088,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.614:0.042,0.301,0.657 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.003,0.148,0.849 1|0:1:0,1,0 1|1:1.895:0.005,0.096,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.943,0.055,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.057,0 0|0:0.062:0.939,0.06,0.001 0|0:0.082:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.961:0.303,0.434,0.263 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.461:0.04,0.459,0.501 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.003,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0.001 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17140286 SNP-3.17139099. A G . PASS AR2=0.995;DR2=0.997;AF=0.335 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.119:0.885,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.44:0.569,0.423,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.367:0.663,0.306,0.03 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17140784 SNP-3.17139597. A G . PASS AR2=0.971;DR2=0.977;AF=0.28 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.577:0.051,0.322,0.628 1|1:2:0,0,1 0|1:1.133:0.059,0.749,0.192 1|0:1:0,1,0 1|1:1.87:0.005,0.12,0.875 0|1:1.195:0.155,0.495,0.35 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.002,0.068,0.93 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.678:0.032,0.257,0.711 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.604:0.072,0.251,0.677 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.608:0.018,0.355,0.627 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.01,0.138,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.188:0.164,0.485,0.351 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.36:0.097,0.447,0.456 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.823:0.009,0.16,0.831 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.619:0.037,0.306,0.656 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.811:0.009,0.17,0.82 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.002,0.101,0.896 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.002,0.072,0.927 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.008,0.13,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.008,0.126,0.866 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17143836 SNP-3.17142649. C A . PASS AR2=0.955;DR2=0.967;AF=0.265 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.807:0.009,0.174,0.816 0|0:0:1,0,0 1|1:1.979:0.001,0.019,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.208:0.162,0.467,0.371 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.188:0.172,0.467,0.36 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.001,0.07,0.93 1|1:2:0,0,1 1|1:1.845:0.003,0.149,0.848 1|1:1.56:0.058,0.325,0.617 0|0:0:1,0,0 1|1:1.572:0.024,0.381,0.596 1|1:1.792:0.01,0.189,0.801 0|0:0:1,0,0 1|1:1.396:0.063,0.477,0.46 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.226:0.199,0.377,0.425 0|0:0:1,0,0 1|1:1.774:0.012,0.201,0.787 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.517:0.063,0.358,0.58 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.007,0.136,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.778:0.013,0.196,0.791 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.453:0.069,0.41,0.522 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.666:0.022,0.29,0.688 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.755:0.015,0.215,0.77 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.083:0.194,0.529,0.277 0|0:0.247:0.783,0.186,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.769:0.009,0.213,0.778 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.444:0.576,0.404,0.02 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.589:0.026,0.358,0.615 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17158273 SNP-3.17157082. A G . PASS AR2=0.994;DR2=0.996;AF=0.225 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.811:0.008,0.172,0.82 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.205:0.795,0.205,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.556:0.034,0.376,0.59 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 +3 17162405 SNP-3.17161214. C A . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17162768 SNP-3.17161577. C A . 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C A . PASS AR2=0.997;DR2=0.998;AF=0.404 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.751,0.229,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.303:0.698,0.3,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17167703 SNP-3.17166512. A G . PASS AR2=0.979;DR2=0.983;AF=0.46 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.807,0.181,0.012 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.004,0.115,0.88 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.004,0.117,0.879 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.006,0.138,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.452:0.043,0.462,0.495 1|1:2:0,0,1 1|1:1.597:0.029,0.345,0.626 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.005,0.127,0.869 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.908,0.088,0.004 0|0:0.075:0.926,0.072,0.002 0|0:0.09:0.914,0.083,0.003 0|0:0.299:0.733,0.234,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.836,0.158,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.144:0.859,0.137,0.003 0|0:0:1,0,0 0|0:0.092:0.911,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.365:0.124,0.388,0.489 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.879:0.004,0.114,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.02:0.147,0.686,0.167 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0,0.065,0.934 1|1:1.916:0.002,0.079,0.919 1|1:1.75:0.017,0.216,0.767 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.786:0.372,0.471,0.158 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.003,0.103,0.893 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17168660 SNP-3.17167469. A G . PASS AR2=0.991;DR2=0.993;AF=0.384 GT:DS:GP 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.074:0.927,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.684:0.434,0.448,0.118 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.745,0.236,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.289:0.732,0.247,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.083:0.918,0.081,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.684:0.434,0.448,0.118 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17170058 SNP-3.17168867. A G . PASS AR2=0.997;DR2=0.997;AF=0.333 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.005,0.111,0.884 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.004,0.148,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.01,0.173,0.817 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.002,0.035,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.004,0.119,0.878 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.054,0.945 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17171398 SNP-3.17170207. C A . PASS AR2=0.996;DR2=0.997;AF=0.327 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.681:0.328,0.664,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.546:0.001,0.451,0.547 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17175832 SNP-3.17174641. C A . PASS AR2=0.989;DR2=0.991;AF=0.402 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.01,0.164,0.826 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.915:0,0.085,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 1|1:1.997:0,0.003,0.997 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.728:0.02,0.232,0.748 1|1:2:0,0,1 1|1:1.721:0.02,0.239,0.741 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.013,0.198,0.789 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:1.737:0.018,0.228,0.755 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.816:0.009,0.166,0.825 1|1:1.741:0.016,0.226,0.757 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17177886 SNP-3.17176695. A G . PASS AR2=0.982;DR2=0.986;AF=0.276 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.199:0.807,0.186,0.007 1|1:2:0,0,1 0|0:0.192:0.817,0.174,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.069,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.386:0.653,0.309,0.039 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.313:0.718,0.252,0.03 0|0:0.357:0.678,0.286,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.89,0.105,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.239:0.776,0.209,0.015 0|0:0.206:0.805,0.184,0.011 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.7,0.273,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.017:0.983,0.017,0 0|0:0.076:0.931,0.062,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.895,0.102,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17177922 SNP-3.17176731. C A . PASS AR2=0.998;DR2=0.998;AF=0.389 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.903:0.004,0.09,0.907 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.907,0.089,0.004 0|1:1:0,1,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 1|1:1.964:0.001,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.059,0.94 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17178542 SNP-3.17177351. C A . PASS AR2=0.99;DR2=0.991;AF=0.377 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.006,0.134,0.86 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.002,0.04,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.883:0.004,0.108,0.888 1|1:1.959:0,0.041,0.959 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.005,0.112,0.883 1|1:1.884:0.004,0.108,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.727:0.013,0.246,0.741 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.957 1|1:1.955:0.001,0.044,0.956 1|1:1.814:0.006,0.174,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.001,0.174,0.825 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.776:0,0.223,0.776 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.938 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.004,0.106,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.009,0.179,0.811 0|0:0:1,0,0 +3 17180744 SNP-3.17179553. A G . PASS AR2=0.905;DR2=0.933;AF=0.247 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.589:0.1,0.211,0.689 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.459:0.545,0.45,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.227:0.789,0.195,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.974:0.207,0.611,0.182 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.262:0.75,0.238,0.012 1|1:2:0,0,1 1|0:1.144:0,0.856,0.144 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.462:0.608,0.321,0.071 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.383:0.678,0.261,0.061 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.72:0.384,0.512,0.104 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.962,0.036,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.383:0.111,0.395,0.494 1|1:2:0,0,1 0|1:1.113:0.217,0.452,0.33 1|1:1.952:0.001,0.047,0.953 1|1:1.968:0.001,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.66:0.439,0.462,0.099 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0.001 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.471:0.09,0.349,0.561 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.496:0.554,0.396,0.05 0|0:0.451:0.586,0.376,0.037 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.085:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.677:0.435,0.453,0.112 1|1:1.328:0.116,0.441,0.443 0|0:0:1,0,0 0|0:0.038:0.963,0.035,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.777,0.195,0.028 0|0:0.661:0.503,0.334,0.164 0|0:0.1:0.906,0.087,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.617:0.047,0.289,0.664 0|0:0.227:0.787,0.2,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.692:0.447,0.414,0.139 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.531:0.55,0.369,0.081 0|0:0:1,0,0 0|0:0.787:0.408,0.397,0.195 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.206:0.804,0.185,0.011 0|0:0:1,0,0 0|1:1.011:0.218,0.553,0.229 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.431:0.617,0.334,0.049 1|1:2:0,0,1 0|0:0.774:0.375,0.476,0.149 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.843:0.224,0.71,0.067 0|0:0.382:0.657,0.303,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.117:0.899,0.085,0.016 0|0:0:1,0,0 +3 17180764 SNP-3.17179573. A G . PASS AR2=0.979;DR2=0.984;AF=0.389 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.049,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.365:0.659,0.318,0.024 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0.001,0.032,0.967 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.093,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.305:0.718,0.258,0.024 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.277:0.744,0.235,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.276:0.745,0.234,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.967:0.001,0.031,0.968 0|0:0.338:0.665,0.332,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.492:0.585,0.338,0.077 0|0:0.077:0.924,0.076,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0.001,0.027,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.213:0.799,0.188,0.012 0|0:0.111:0.889,0.11,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.856,0.141,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.276:0.745,0.234,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 0|0:0:1,0,0 1|1:1.591:0.062,0.285,0.653 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.005:0.995,0.005,0 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:1.877:0.003,0.118,0.88 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.918:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:1.903:0.002,0.092,0.906 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.002,0.065,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0,0.054,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.252:0.765,0.218,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17180994 SNP-3.17179803. A G . PASS AR2=0.944;DR2=0.961;AF=0.278 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.46:0.075,0.391,0.535 1|1:1.512:0.059,0.37,0.571 1|1:1.574:0.048,0.331,0.622 1|1:2:0,0,1 1|1:1.647:0.029,0.295,0.676 0|1:1.172:0.177,0.473,0.35 0|0:0:1,0,0 0|0:1.108:0.222,0.448,0.33 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.399:0.083,0.434,0.482 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.37:0.087,0.456,0.457 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.82:0.01,0.159,0.83 0|0:0:1,0,0 0|1:0.883:0.375,0.368,0.257 1|1:1.844:0.004,0.148,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.103:0.212,0.473,0.315 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.606:0.039,0.316,0.645 1|1:1.891:0.004,0.1,0.896 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.008,0.169,0.824 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.435:0.09,0.385,0.525 1|1:2:0,0,1 1|1:1.939:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.001,0.073,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.49:0.059,0.392,0.549 1|1:2:0,0,1 1|1:1.582:0.047,0.324,0.629 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.635:0.035,0.294,0.671 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.679:0.032,0.256,0.712 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.778:0.016,0.19,0.794 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.575:0.048,0.33,0.623 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.011,0.138,0.851 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17185798 SNP-3.17184607. C A . PASS AR2=0.979;DR2=0.983;AF=0.366 GT:DS:GP 0|0:0.091:0.914,0.082,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.136:0.866,0.132,0.002 0|0:0:1,0,0 0|0:0.138:0.864,0.134,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.365:0.665,0.305,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.539:0.518,0.425,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.003:0.997,0.003,0 0|0:0.021:0.979,0.02,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.006:0.994,0.006,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.043:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.797,0.149,0.054 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0.15:0.859,0.132,0.009 0|0:0.064:0.937,0.061,0.002 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 1|1:1.942:0,0.058,0.942 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0.001,0.05,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.577:0.459,0.506,0.035 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.886,0.107,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.785,0.205,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.89,0.101,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.87,0.122,0.008 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0.253:0.769,0.209,0.022 0|0:0.296:0.727,0.25,0.023 0|0:0.137:0.863,0.136,0.001 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.003:0.997,0.003,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17188092 SNP-3.17186901. C A . PASS AR2=0.997;DR2=0.997;AF=0.412 GT:DS:GP 0|0:0.114:0.895,0.096,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.689:0.058,0.194,0.748 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17190109 SNP-3.17188918. C A . PASS AR2=0.937;DR2=0.948;AF=0.267 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.304:0,0.696,0.304 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 0|1:1:0.237,0.527,0.237 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.024,0.174,0.801 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.132:0.184,0.501,0.316 1|1:2:0,0,1 1|1:1.574:0.055,0.316,0.629 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.841:0.405,0.348,0.247 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.182:0.169,0.479,0.352 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.891,0.099,0.011 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.613:0.405,0.578,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.812:0.3,0.589,0.111 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.022:0.979,0.02,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.507:0.074,0.345,0.581 0|0:0:1,0,0 0|1:1.017:0.24,0.502,0.258 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.747,0.252,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.157:0.21,0.423,0.367 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.899,0.099,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.934,0.064,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.162:0.178,0.481,0.341 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.154:0.181,0.484,0.335 1|1:2:0,0,1 0|1:1.219:0.155,0.471,0.374 1|1:2:0,0,1 1|0:1.015:0.225,0.534,0.24 1|0:1.204:0.16,0.475,0.364 0|1:1.227:0.152,0.469,0.379 1|1:1.204:0.16,0.475,0.364 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.237:0.148,0.467,0.385 0|0:0.02:0.98,0.019,0.001 1|1:2:0,0,1 1|0:1.229:0.151,0.468,0.381 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17190292 SNP-3.17189101. A G . PASS AR2=0.965;DR2=0.973;AF=0.366 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.783:0.333,0.551,0.116 0|0:0:1,0,0 0|0:0.395:0.645,0.314,0.04 0|0:0:1,0,0 0|0:0.244:0.777,0.202,0.021 0|0:0:1,0,0 1|0:0.634:0.441,0.484,0.075 0|0:0:1,0,0 1|0:0.676:0.454,0.417,0.13 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.365:0.666,0.303,0.031 1|1:2:0,0,1 0|0:0.14:0.863,0.134,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.123:0.879,0.118,0.002 0|0:0.227:0.794,0.186,0.021 0|0:0.17:0.836,0.158,0.006 0|0:0.212:0.802,0.185,0.013 1|1:2:0,0,1 0|1:0.871:0.33,0.468,0.201 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.008,0.124,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.319:0.709,0.263,0.028 0|0:0.647:0.458,0.438,0.104 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.812:0.019,0.15,0.831 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.788:0.365,0.483,0.153 0|0:0:1,0,0 1|0:1.096:0.112,0.68,0.208 1|1:2:0,0,1 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.871,0.121,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.173:0.836,0.155,0.009 0|0:0.295:0.722,0.26,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17194160 SNP-3.17192969. C A . PASS AR2=0.95;DR2=0.963;AF=0.443 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.499:0.09,0.321,0.589 1|1:1.79:0.019,0.171,0.81 0|0:0.357:0.667,0.309,0.024 0|0:0:1,0,0 0|1:0.669:0.331,0.669,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.112:0.893,0.102,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.889:0.323,0.465,0.212 0|0:0.021:0.979,0.02,0 1|1:1.716:0.026,0.232,0.742 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.179:0.231,0.36,0.41 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.042:0.221,0.517,0.263 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.83,0.159,0.011 0|0:0.323:0.716,0.245,0.039 0|0:0:1,0,0 0|0:0.608:0.533,0.326,0.141 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.958,0.041,0.002 1|1:2:0,0,1 0|0:0.147:0.859,0.134,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.769,0.212,0.019 0|0:0.249:0.762,0.226,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0.001,0.019,0.98 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.818:0.01,0.162,0.828 1|1:1.674:0.038,0.249,0.712 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.952 1|1:1.985:0,0.014,0.985 1|1:1.873:0.002,0.122,0.875 1|1:1.863:0.005,0.127,0.868 1|1:2:0,0,1 1|1:1.987:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.003,0.1,0.897 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:1.949:0.001,0.049,0.95 1|1:1.886:0.006,0.101,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.51:0.558,0.374,0.068 0|0:0.153:0.855,0.137,0.008 0|0:0:1,0,0 1|1:1.975:0.001,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.098:0.904,0.094,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.887,0.11,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.658,0.295,0.047 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.152:0.855,0.138,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.145:0.184,0.488,0.328 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.792,0.198,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.796:0.041,0.122,0.837 1|0:0.628:0.499,0.374,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.522:0.53,0.419,0.051 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17194174 SNP-3.17192983. C A . PASS AR2=0.859;DR2=0.89;AF=0.261 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.192:0.128,0.552,0.32 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.891,0.105,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.217:0.792,0.199,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.068:0.16,0.612,0.228 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.123:0.156,0.565,0.279 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.342:0.701,0.257,0.042 1|1:1.469:0.068,0.395,0.537 0|0:0:1,0,0 0|1:0.993:0.249,0.508,0.242 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.605:0.495,0.406,0.099 1|1:2:0,0,1 0|1:1.052:0.228,0.492,0.28 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.237:0.149,0.465,0.386 0|0:0:1,0,0 0|1:1.011:0.248,0.493,0.259 0|0:0.34:0.736,0.189,0.076 0|1:0.941:0.282,0.495,0.223 0|0:0:1,0,0 0|0:0.215:0.801,0.182,0.017 1|1:1.454:0.085,0.376,0.539 1|1:2:0,0,1 0|0:1.043:0.259,0.438,0.302 0|0:0.784:0.37,0.475,0.155 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|1:1.212:0.15,0.488,0.362 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.559:0.526,0.39,0.084 0|0:0:1,0,0 0|1:0.73:0.395,0.481,0.125 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.528:0.592,0.288,0.12 0|1:0.559:0.517,0.407,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.866,0.128,0.007 0|0:0.3:0.732,0.236,0.032 0|0:0:1,0,0 0|0:0.566:0.523,0.389,0.088 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.698:0.433,0.435,0.132 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.855:0.319,0.506,0.175 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.194:0.82,0.167,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.366:0.674,0.286,0.04 1|0:0.872:0.222,0.684,0.094 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.68:0.441,0.437,0.122 0|0:0.723:0.408,0.461,0.131 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.7:0.354,0.593,0.053 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.589:0.496,0.419,0.085 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.032:0.236,0.497,0.267 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.796,0.187,0.017 0|0:0.018:0.982,0.018,0 0|0:0.024:0.976,0.023,0.001 1|1:2:0,0,1 0|0:0.09:0.92,0.07,0.01 0|0:0:1,0,0 0|0:0.219:0.81,0.162,0.029 0|1:0.681:0.438,0.442,0.12 0|0:0:1,0,0 0|1:0.813:0.366,0.455,0.179 0|1:0.583:0.516,0.384,0.099 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.001 0|0:0.325:0.71,0.254,0.036 0|0:0.428:0.609,0.354,0.037 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.301:0.128,0.443,0.429 1|1:2:0,0,1 1|0:0.442:0.616,0.326,0.058 0|0:0:1,0,0 0|1:0.951:0.269,0.511,0.22 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.421:0.634,0.312,0.054 1|1:2:0,0,1 0|1:1.299:0.129,0.443,0.428 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.34:0.126,0.408,0.466 0|0:0:1,0,0 0|0:0:1,0,0 +3 17197639 SNP-3.17196448. C A . PASS AR2=0.978;DR2=0.986;AF=0.323 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.002,0.068,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.296:0.153,0.397,0.45 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.497:0.504,0.496,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.131:0.872,0.125,0.003 0|0:0.011:0.989,0.011,0 1|1:1.679:0.004,0.314,0.682 0|0:0.246:0.773,0.209,0.019 0|0:0.337:0.694,0.276,0.031 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.346:0.114,0.427,0.459 1|1:1.901:0.001,0.098,0.901 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.889:0.004,0.104,0.892 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.285:0.736,0.243,0.021 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.702:0.012,0.273,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.002,0.046,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17198765 SNP-3.17197574. C A . PASS AR2=0.998;DR2=0.999;AF=0.351 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.002,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.386:0.002,0.609,0.389 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17199644 SNP-3.17198453. C A . PASS AR2=0.992;DR2=0.993;AF=0.351 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.006,0.135,0.859 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.848:0.007,0.138,0.855 1|1:2:0,0,1 1|1:1.827:0.009,0.155,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.012,0.213,0.775 1|1:2:0,0,1 1|1:1.899:0.003,0.095,0.902 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.756:0.024,0.195,0.781 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.857:0.005,0.133,0.862 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.945:0.001,0.054,0.945 1|1:2:0,0,1 1|1:1.947:0.001,0.05,0.948 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.925 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.008,0.189,0.803 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.004,0.107,0.889 0|0:0:1,0,0 +3 17199966 SNP-3.17198775. A G . PASS AR2=1;DR2=1;AF=0.403 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17201134 SNP-3.17199943. C A . PASS AR2=0.998;DR2=0.998;AF=0.401 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.999:0.071,0.859,0.07 1|1:2:0,0,1 1|0:0.772:0.228,0.772,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.147:0,0.853,0.147 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17202901 SNP-3.17201710. A G . PASS AR2=0.992;DR2=0.993;AF=0.219 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.864:0.006,0.123,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.006,0.156,0.838 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.915,0.083,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0,0.143,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.925:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0,0.09,0.91 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.729:0.014,0.242,0.744 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17204094 SNP-3.17202903. C A . PASS AR2=0.989;DR2=0.991;AF=0.385 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.722,0.255,0.023 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.93:0.002,0.066,0.932 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.331:0.011,0.647,0.342 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0.001,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.629:0.014,0.343,0.643 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.513:0.077,0.333,0.59 1|1:1.961:0.001,0.038,0.961 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.924:0.002,0.072,0.926 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.08:0.921,0.078,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17206153 SNP-3.17204962. A G . PASS AR2=0.997;DR2=0.997;AF=0.212 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0,0.053,0.947 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.127:0.143,0.586,0.271 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17206800 SNP-3.17205609. A G . PASS AR2=0.851;DR2=0.885;AF=0.292 GT:DS:GP 0|0:0.152:0.858,0.132,0.01 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0.053:0.948,0.05,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.767,0.233,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.276:0.106,0.511,0.382 1|1:2:0,0,1 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.47:0.635,0.26,0.105 0|0:0.192:0.822,0.163,0.015 0|1:1.083:0.191,0.536,0.274 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.11:0,0.89,0.11 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.493:0.558,0.391,0.051 0|0:0:1,0,0 1|0:1.159:0.16,0.521,0.319 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.108:0.236,0.42,0.344 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.361:0.105,0.429,0.466 1|0:0.907:0.339,0.414,0.247 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.072:0.212,0.504,0.284 0|1:1.319:0.123,0.434,0.442 1|1:1.532:0.058,0.352,0.59 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.296:0.729,0.245,0.025 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.499:0.614,0.273,0.113 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.974:0.282,0.462,0.256 1|0:1.316:0.14,0.403,0.457 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.143:0.863,0.132,0.005 0|0:0.212:0.8,0.189,0.011 0|0:0:1,0,0 0|0:0.134:0.873,0.12,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.287:0.731,0.251,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.03,0.001 0|0:0.175:0.833,0.159,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.351:0.683,0.284,0.033 0|0:0:1,0,0 0|1:0.419:0.625,0.331,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.199:0.124,0.554,0.323 1|0:1.187:0.138,0.536,0.325 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.88:0.323,0.475,0.203 0|0:0.783:0.363,0.49,0.146 0|0:0.128:0.877,0.118,0.005 0|0:0.526:0.523,0.428,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.516:0.553,0.379,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.127:0.19,0.494,0.316 1|0:0.528:0.511,0.45,0.039 1|0:0.803:0.35,0.497,0.153 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.402:0.629,0.339,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.272:0.741,0.245,0.014 0|0:0:1,0,0 0|0:0.604:0.459,0.477,0.063 0|0:0:1,0,0 1|0:1.236:0.084,0.595,0.321 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.52:0.56,0.36,0.08 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.764:0.405,0.427,0.169 1|1:2:0,0,1 0|1:1.112:0.214,0.46,0.326 1|1:2:0,0,1 1|0:0.896:0.281,0.543,0.177 1|0:0.736:0.4,0.464,0.136 0|0:0.681:0.456,0.407,0.137 0|0:0:1,0,0 0|1:0.833:0.327,0.512,0.161 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.177:0.836,0.151,0.013 1|1:1.426:0.088,0.398,0.514 0|0:0:1,0,0 0|0:0.125:0.88,0.114,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.877,0.119,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.668:0.47,0.392,0.138 0|0:0:1,0,0 0|1:0.743:0.408,0.441,0.151 0|0:0.533:0.552,0.363,0.085 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.243:0.782,0.193,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.838,0.153,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.854,0.139,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.409:0.093,0.404,0.502 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.189:0.822,0.167,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.845,0.147,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.235:0.782,0.2,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.494:0.065,0.376,0.559 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17210461 SNP-3.17209270. C A . PASS AR2=1;DR2=1;AF=0.399 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17210715 SNP-3.17209524. A G . PASS AR2=0.997;DR2=0.997;AF=0.23 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.766,0.223,0.011 1|0:1:0,1,0 0|0:0.07:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.09:0.91,0.09,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17211215 SNP-3.17210024. C A . PASS AR2=0.988;DR2=0.991;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0,0.081,0.919 1|1:1.907:0.003,0.088,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.002,0.079,0.919 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.66:0.023,0.293,0.683 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.654:0.029,0.289,0.682 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.04,0.96 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.961:0.001,0.037,0.962 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.786:0.009,0.196,0.795 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.738:0.015,0.233,0.752 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.016,0.114,0.87 0|0:0:1,0,0 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.388:0.078,0.456,0.466 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17211277 SNP-3.17210086. C A . PASS AR2=0.99;DR2=0.992;AF=0.396 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.742,0.258,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.002 0|0:0.105:0.898,0.098,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.069:0.932,0.068,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.049,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0,0.037,0.963 0|0:0.156:0.85,0.144,0.006 1|1:2:0,0,1 1|1:1.88:0.001,0.117,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.566:0.435,0.563,0.002 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.059,0.001 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0.073:0.929,0.07,0.002 0|0:0.115:0.888,0.108,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.095:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.067:0.935,0.064,0.001 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17211985 SNP-3.17210794. A G . PASS AR2=0.997;DR2=0.997;AF=0.392 GT:DS:GP 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.876,0.117,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.06,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.965,0.033,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 +3 17213124 SNP-3.17211933. C A . PASS AR2=0.997;DR2=0.997;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.003,0.145,0.852 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:1.912:0.003,0.082,0.915 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.767:0.011,0.211,0.778 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.058,0.942 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17213678 SNP-3.17212487. C A . PASS AR2=1;DR2=1;AF=0.391 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.078:0.924,0.075,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17217646 SNP-3.17216455. A G . PASS AR2=0.893;DR2=0.923;AF=0.299 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:1.651:0.012,0.325,0.663 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.702:0.418,0.461,0.12 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.584:0.527,0.362,0.111 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.94:0.28,0.499,0.221 0|0:0.059:0.943,0.055,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.319:0.711,0.259,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.505:0.573,0.348,0.078 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.511:0.556,0.377,0.067 0|0:0.41:0.64,0.311,0.049 0|0:0.684:0.449,0.419,0.133 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.579:0.508,0.406,0.087 0|0:0:1,0,0 0|0:0.759:0.419,0.403,0.178 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.539:0.536,0.389,0.075 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.063:0.177,0.582,0.241 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.997:0.232,0.538,0.229 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.519:0.063,0.356,0.581 1|1:1.624:0.039,0.298,0.663 1|1:2:0,0,1 1|1:1.709:0.039,0.213,0.748 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.911:0.339,0.412,0.25 0|0:0.484:0.587,0.341,0.071 0|0:0.239:0.775,0.212,0.013 0|0:0.337:0.693,0.277,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.815,0.177,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.363:0.107,0.423,0.47 1|1:1.75:0.016,0.217,0.766 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.517:0.055,0.373,0.572 0|0:0.121:0.881,0.117,0.002 1|1:2:0,0,1 1|1:1.207:0.115,0.563,0.322 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.866,0.132,0.002 0|1:1.049:0.144,0.663,0.193 0|0:1.086:0.208,0.497,0.295 0|1:1.404:0.096,0.404,0.5 0|1:1.056:0.242,0.46,0.298 0|1:1.283:0.131,0.455,0.414 1|1:1.674:0.031,0.265,0.705 1|1:1.546:0.052,0.35,0.598 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.618:0.48,0.423,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.954,0.045,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.877:0.285,0.554,0.161 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.45:0.095,0.36,0.545 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.471:0.602,0.325,0.073 1|1:2:0,0,1 1|1:1.455:0.083,0.379,0.538 0|0:0:1,0,0 0|0:0.119:0.885,0.111,0.004 1|1:2:0,0,1 +3 17221550 SNP-3.17220359. C A . PASS AR2=0.931;DR2=0.946;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.787,0.195,0.017 0|1:0.793:0.32,0.567,0.113 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.709:0.42,0.451,0.129 0|0:0:1,0,0 0|0:0.354:0.673,0.301,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.764,0.221,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.897:0.312,0.48,0.209 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.435:0.612,0.341,0.047 0|0:0:1,0,0 0|0:0.172:0.844,0.14,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.063,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.123:0.883,0.112,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0.199:0.813,0.176,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.187:0.822,0.17,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0.089:0.913,0.084,0.002 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.002 0|0:0.077:0.925,0.073,0.002 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.084:0.918,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.003,0.086,0.911 1|1:2:0,0,1 1|1:1.892:0.004,0.101,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.342:0.702,0.254,0.044 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.295:0.096,0.512,0.392 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.618:0.039,0.304,0.657 1|1:2:0,0,1 1|1:1.769:0.011,0.21,0.78 0|0:0:1,0,0 0|1:1.356:0.03,0.583,0.387 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.01,0.195,0.795 1|1:1.466:0.074,0.387,0.54 0|0:0:1,0,0 0|0:0.041:0.961,0.037,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.506:0.043,0.407,0.55 1|1:2:0,0,1 1|1:1.723:0.021,0.236,0.743 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.078,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.818,0.172,0.011 0|0:0.152:0.855,0.138,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.398:0.662,0.277,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 0|0:0.118:0.885,0.111,0.003 0|0:0.112:0.891,0.106,0.003 0|0:0.162:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.859,0.134,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.629:0.415,0.541,0.044 1|1:2:0,0,1 0|0:0.091:0.911,0.086,0.002 1|1:2:0,0,1 0|0:0.109:0.894,0.103,0.003 1|1:2:0,0,1 0|0:0.121:0.882,0.114,0.004 0|1:1.625:0.014,0.348,0.639 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0.265:0.754,0.228,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.661:0.036,0.267,0.697 0|0:0:1,0,0 1|0:1.368:0.071,0.49,0.439 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.009,0.149,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.715:0.431,0.423,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.144,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.158:0.849,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.002,0.11,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.723:0.023,0.231,0.746 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.146,0.007 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17228574 SNP-3.17227383. A G . PASS AR2=0.825;DR2=0.861;AF=0.265 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.399:0.09,0.421,0.489 0|0:0:1,0,0 1|0:0.643:0.445,0.468,0.088 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.531:0.071,0.328,0.602 0|0:0:1,0,0 1|1:1.417:0.088,0.408,0.505 0|1:0.756:0.389,0.467,0.144 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.166:0.171,0.492,0.337 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.197:0.156,0.49,0.353 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.508:0.552,0.389,0.059 1|0:0.546:0.533,0.389,0.078 0|0:0:1,0,0 0|0:0.704:0.438,0.419,0.143 1|1:2:0,0,1 0|0:0.482:0.528,0.462,0.01 0|0:0.15:0.858,0.133,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.664:0.452,0.432,0.116 1|1:2:0,0,1 0|1:0.756:0.389,0.467,0.145 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.785:0.368,0.479,0.153 0|0:0.599:0.498,0.405,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.696:0.428,0.448,0.124 0|1:0.764:0.383,0.471,0.146 0|0:0:1,0,0 0|1:0.711:0.417,0.455,0.128 1|1:0.748:0.396,0.459,0.145 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.812:0.354,0.481,0.166 0|0:0.842:0.338,0.483,0.179 1|1:2:0,0,1 0|1:0.789:0.369,0.473,0.158 0|1:0.774:0.378,0.471,0.152 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.766:0.382,0.469,0.148 0|0:0:1,0,0 0|1:0.775:0.379,0.467,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.497:0.597,0.309,0.094 1|0:0.764:0.383,0.471,0.147 0|0:0:1,0,0 0|0:0.778:0.373,0.475,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.296:0.129,0.447,0.425 1|1:1.418:0.089,0.404,0.507 0|0:0.764:0.39,0.456,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.63:0.473,0.424,0.103 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.681:0.438,0.443,0.119 0|0:0.721:0.41,0.459,0.131 0|0:0.762:0.383,0.472,0.145 0|0:0:1,0,0 1|0:0.754:0.389,0.467,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.585:0.044,0.328,0.628 0|0:0:1,0,0 0|1:1.096:0.204,0.495,0.301 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.758:0.389,0.463,0.147 0|0:0:1,0,0 0|0:0.728:0.407,0.458,0.135 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.705:0.419,0.457,0.124 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.741:0.412,0.435,0.153 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.769:0.382,0.467,0.151 1|1:2:0,0,1 0|0:0.873:0.317,0.492,0.191 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.628:0.044,0.284,0.672 0|1:1.601:0.04,0.318,0.642 0|0:0:1,0,0 0|0:0.754:0.397,0.453,0.15 1|0:0.868:0.326,0.48,0.194 1|1:1.462:0.076,0.386,0.538 0|0:0:1,0,0 0|0:0.809:0.357,0.477,0.166 1|1:2:0,0,1 0|1:1.28:0.144,0.432,0.424 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.618:0.471,0.44,0.089 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.858:0.327,0.487,0.185 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.784:0.372,0.471,0.156 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17229925 SNP-3.17228734. C A . PASS AR2=0.885;DR2=0.901;AF=0.231 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.922,0.075,0.003 0|0:0.025:0.975,0.025,0 0|0:0.164:0.842,0.152,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.263:0.755,0.228,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.73,0.253,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.195:0.815,0.175,0.01 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.202:0.16,0.479,0.361 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.79:0.305,0.6,0.095 0|1:0.83:0.338,0.494,0.168 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.811:0.356,0.476,0.168 1|0:0.848:0.336,0.479,0.184 1|0:0.91:0.301,0.489,0.21 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.705:0.422,0.452,0.126 1|1:2:0,0,1 1|0:0.98:0.217,0.586,0.197 0|0:0:1,0,0 0|0:0.267:0.754,0.224,0.021 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.183:0.168,0.481,0.351 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.782:0.359,0.5,0.141 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.898,0.099,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.198:0.808,0.186,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.054:0.23,0.486,0.284 1|0:1.012:0.205,0.577,0.217 0|0:0:1,0,0 0|1:0.884:0.299,0.519,0.182 0|0:0:1,0,0 0|0:0.702:0.422,0.454,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.88,0.114,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.786,0.204,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.826:0.337,0.5,0.163 0|1:1.023:0.214,0.549,0.237 0|0:0:1,0,0 0|1:1.176:0.171,0.482,0.347 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.67:0.469,0.392,0.139 0|0:0.127:0.878,0.117,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.739:0.393,0.475,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.862:0.322,0.494,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.78:0.369,0.482,0.149 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.815,0.173,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.311:0.714,0.26,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.537:0.542,0.379,0.079 1|0:0.882:0.303,0.513,0.185 1|1:0.929:0.293,0.485,0.222 0|0:0:1,0,0 0|0:0.429:0.595,0.381,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.67:0.447,0.436,0.117 0|1:0.924:0.289,0.497,0.213 1|1:2:0,0,1 0|0:0.986:0.28,0.454,0.266 0|0:0.853:0.335,0.477,0.188 0|0:0.051:0.951,0.046,0.002 1|0:0.776:0.378,0.468,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17236363 SNP-3.17235172. C A . PASS AR2=0.971;DR2=0.978;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 1|1:1.46:0.065,0.409,0.525 0|1:1:0,1,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0.109:0.898,0.095,0.007 0|0:0.14:0.865,0.13,0.005 0|0:0.135:0.875,0.115,0.01 0|1:1:0,1,0 1|1:1.871:0.004,0.121,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.918,0.082,0.001 1|1:1.853:0.006,0.134,0.86 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.717:0.017,0.249,0.734 0|0:0.182:0.833,0.151,0.015 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.954,0.045,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.309:0.115,0.461,0.424 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.001,0.199,0.8 0|1:1:0,1,0 1|1:1.563:0.044,0.348,0.607 1|1:2:0,0,1 1|1:1.8:0.007,0.186,0.807 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.562:0.033,0.372,0.595 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.005,0.106,0.888 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.852,0.136,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.377:0.1,0.424,0.477 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.01,0.151,0.839 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.009,0.116,0.875 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17236799 SNP-3.17235608. A G . PASS AR2=0.896;DR2=0.922;AF=0.489 GT:DS:GP 1|1:1.628:0.032,0.308,0.66 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.183:0.166,0.484,0.349 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.013,0.114,0.873 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.482:0.069,0.38,0.551 1|1:1.858:0.006,0.131,0.863 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.017,0.262,0.721 1|1:2:0,0,1 1|1:1.748:0.018,0.217,0.765 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.014,0.188,0.797 1|1:1.704:0.021,0.254,0.725 1|1:1.493:0.059,0.389,0.552 0|1:1.412:0.088,0.412,0.5 1|1:2:0,0,1 1|1:1.569:0.054,0.323,0.623 0|1:0.999:0.296,0.408,0.296 0|1:1:0,1,0 1|1:1.645:0.032,0.291,0.677 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.704:0.022,0.253,0.725 1|1:1.637:0.036,0.291,0.673 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.688:0.024,0.263,0.713 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.431:0.082,0.404,0.513 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.219:0.156,0.468,0.375 1|1:2:0,0,1 1|1:1.691:0.023,0.264,0.713 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.643:0.033,0.291,0.676 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.964:0.26,0.515,0.224 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.736:0.014,0.237,0.75 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.042,0.306,0.652 1|0:1:0,1,0 0|1:1.558:0.041,0.36,0.599 1|1:2:0,0,1 1|1:1.975:0.001,0.023,0.976 1|0:1.645:0.03,0.294,0.676 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.003,0.103,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.004,0.067,0.929 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.405:0.067,0.462,0.472 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.456:0.075,0.394,0.531 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.48:0.062,0.395,0.543 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.013,0.2,0.787 1|1:2:0,0,1 0|1:1.187:0.245,0.322,0.432 0|0:0.368:0.658,0.315,0.026 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.483:0.065,0.387,0.548 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.686:0.026,0.262,0.712 1|1:2:0,0,1 1|1:1.593:0.041,0.326,0.634 1|1:1.52:0.063,0.355,0.583 0|0:0.271:0.749,0.231,0.02 1|1:1.752:0.016,0.215,0.768 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.475:0.072,0.382,0.547 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.535:0.056,0.354,0.59 0|0:0:1,0,0 1|1:1.593:0.038,0.33,0.631 1|0:1.324:0.118,0.44,0.442 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.815:0.009,0.167,0.824 0|0:0:1,0,0 1|0:0.619:0.488,0.405,0.107 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.001,0.08,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 1|1:1.109:0.219,0.452,0.329 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.698:0.017,0.268,0.715 1|1:1.763:0.014,0.209,0.777 1|1:1.701:0.006,0.286,0.707 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.693:0.024,0.259,0.717 1|1:1.59:0.042,0.325,0.633 1|1:2:0,0,1 1|1:1.699:0.029,0.242,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.651:0.031,0.286,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.883:0.003,0.111,0.886 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17240709 SNP-3.17239518. A G . PASS AR2=0.989;DR2=0.991;AF=0.232 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.002,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.214:0.798,0.191,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.815,0.176,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.441:0.152,0.254,0.593 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.002,0.051,0.947 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.91,0.089,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.845,0.149,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17240878 SNP-3.17239687. A G . PASS AR2=0.989;DR2=0.99;AF=0.612 GT:DS:GP 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0,0.172,0.828 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.815:0,0.185,0.815 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0,0.189,0.811 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:1.805:0,0.195,0.805 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:1.915:0.002,0.08,0.918 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:1.945:0.001,0.054,0.945 1|1:1.935:0.001,0.063,0.936 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:1.931:0.001,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 1|1:2:0,0,1 1|1:1.914:0.002,0.081,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.932:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0,0.12,0.88 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.035,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:1.88:0.003,0.113,0.883 1|1:1.965:0,0.035,0.965 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.946 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 1|1:1.915:0.002,0.08,0.917 0|0:0:1,0,0 1|1:2:0,0,1 +3 17248594 SNP-3.17247403. C A . PASS AR2=0.996;DR2=0.996;AF=0.357 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.964 1|1:1.921:0.002,0.075,0.923 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.013,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.003,0.087,0.911 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 1|1:2:0,0,1 0|0:0.074:0.928,0.071,0.002 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.834:0,0.166,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17251999 SNP-3.17250808. C A . PASS AR2=0.974;DR2=0.98;AF=0.327 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.011,0.186,0.803 1|1:1.774:0.013,0.201,0.787 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.753:0.015,0.218,0.767 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.757:0.014,0.215,0.771 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.623:0.038,0.302,0.66 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.92:0.003,0.075,0.923 1|1:1.603:0.037,0.323,0.64 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.608:0.039,0.314,0.647 1|1:2:0,0,1 1|1:1.63:0.033,0.304,0.663 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.736:0.013,0.237,0.749 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.002,0.12,0.878 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.781:0.012,0.194,0.794 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.691:0.014,0.281,0.705 1|1:1.641:0.033,0.294,0.673 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.606:0.032,0.329,0.639 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0,0.072,0.928 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.005,0.086,0.909 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.674:0.036,0.254,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.633:0.028,0.311,0.661 0|0:0:1,0,0 +3 17253025 SNP-3.17251834. A G . PASS AR2=0.849;DR2=0.885;AF=0.325 GT:DS:GP 0|1:1.549:0.047,0.358,0.595 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.639,0.32,0.04 1|1:1.554:0.045,0.356,0.599 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.286:0.721,0.272,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.905:0.276,0.542,0.181 1|1:2:0,0,1 1|1:1.754:0.006,0.234,0.76 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.844:0.316,0.524,0.16 1|1:1.803:0.011,0.176,0.814 0|0:0.31:0.714,0.261,0.024 0|0:0.633:0.471,0.426,0.103 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.284:0.737,0.242,0.021 0|0:0.278:0.732,0.258,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.422:0.623,0.332,0.045 1|1:1.176:0.165,0.494,0.341 0|0:0.383:0.656,0.305,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.937:0.245,0.572,0.182 0|0:0:1,0,0 0|1:0.906:0.201,0.692,0.107 0|0:0.405:0.637,0.321,0.042 0|0:0:1,0,0 1|1:1.651:0.032,0.284,0.683 0|0:0:1,0,0 1|1:1.654:0.031,0.283,0.686 1|1:1.648:0.03,0.292,0.678 0|0:0.428:0.619,0.333,0.048 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.019,0.203,0.778 0|0:0:1,0,0 1|1:1.465:0.074,0.388,0.539 1|1:1.599:0.04,0.321,0.639 0|0:0:1,0,0 0|0:0.328:0.695,0.281,0.023 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.623:0.034,0.309,0.657 0|0:0.412:0.631,0.326,0.043 1|0:0.972:0.271,0.487,0.242 1|1:2:0,0,1 0|0:0.495:0.568,0.369,0.063 0|1:0.489:0.573,0.366,0.061 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.585:0.039,0.336,0.624 0|0:0.513:0.535,0.417,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.696:0.017,0.27,0.713 0|0:0:1,0,0 0|1:0.535:0.548,0.369,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.623:0.061,0.255,0.684 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.366:0.667,0.299,0.034 0|0:0.345:0.682,0.29,0.028 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.546:0.051,0.352,0.597 1|1:2:0,0,1 1|1:1.589:0.042,0.326,0.631 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.017,0.222,0.761 0|0:0.316:0.71,0.264,0.026 1|1:1.426:0.083,0.409,0.508 0|0:0.127:0.876,0.121,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.223:0.14,0.498,0.363 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.729:0.016,0.24,0.744 0|0:0:1,0,0 0|1:1.428:0.018,0.536,0.446 0|1:0.741:0.386,0.488,0.127 0|1:1.448:0.077,0.398,0.525 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.207:0.139,0.514,0.346 0|0:0:1,0,0 1|1:1.39:0.09,0.431,0.479 1|0:1.527:0.047,0.379,0.574 1|1:2:0,0,1 1|0:1.184:0.145,0.526,0.329 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.909:0.251,0.59,0.159 1|1:1.533:0.046,0.374,0.58 1|1:1.573:0.046,0.334,0.619 1|1:1.339:0.106,0.448,0.445 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.392:0.093,0.423,0.485 0|1:1.269:0.145,0.441,0.414 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.787:0.244,0.725,0.031 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.637:0.036,0.291,0.673 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.602:0.039,0.32,0.641 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.563:0.048,0.341,0.611 1|1:1.43:0.076,0.419,0.505 1|1:1.65:0.029,0.292,0.679 1|1:1.718:0.03,0.223,0.748 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.438:0.08,0.401,0.518 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.809:0.343,0.505,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17254178 SNP-3.17252987. C A . PASS AR2=0.993;DR2=0.994;AF=0.402 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.235:0.805,0.156,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.813:0.374,0.44,0.186 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.134,0.005 0|0:0:1,0,0 0|0:0.086:0.917,0.08,0.003 0|0:0:1,0,0 0|0:0.202:0.803,0.193,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.872,0.123,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17255297 SNP-3.17254106. C A . PASS AR2=0.988;DR2=0.99;AF=0.379 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.413:0.616,0.356,0.028 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.162:0.846,0.146,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.176,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.176,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.816,0.172,0.011 1|1:2:0,0,1 0|0:0.212:0.8,0.189,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.213:0.798,0.191,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.828,0.164,0.008 1|1:2:0,0,1 0|0:0.175:0.833,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.79,0.197,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17257252 SNP-3.17256061. C A . PASS AR2=0.976;DR2=0.982;AF=0.41 GT:DS:GP 0|1:1:0,1,0 1|0:1.158:0.186,0.469,0.345 0|1:1.158:0.186,0.469,0.345 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.158:0.186,0.469,0.345 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.071:0.931,0.067,0.002 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.74,0.25,0.01 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.48:0.56,0.401,0.04 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.606:0.504,0.386,0.11 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0.549:0.537,0.378,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.391:0.621,0.366,0.013 0|0:0.146:0.86,0.133,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.883,0.112,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.573:0.52,0.386,0.094 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17257501 SNP-3.17256310. A G . PASS AR2=0.914;DR2=0.927;AF=0.394 GT:DS:GP 1|1:1.721:0.021,0.238,0.741 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.256:0.141,0.463,0.397 1|1:1.715:0.018,0.25,0.733 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.158:0.102,0.637,0.26 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.321:0.104,0.472,0.424 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.232:0.152,0.464,0.384 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.264:0.037,0.662,0.301 0|0:0:1,0,0 1|0:1.31:0.106,0.479,0.415 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.861:0.257,0.625,0.118 0|0:0.176:0.83,0.163,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.236:0.032,0.7,0.268 1|1:2:0,0,1 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.717:0.025,0.233,0.742 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.951:0.285,0.48,0.235 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.002,0.076,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.332:0.102,0.464,0.434 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.002,0.117,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.811:0.021,0.147,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.115:0.209,0.467,0.324 1|1:1.686:0.025,0.263,0.711 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.082:0.203,0.512,0.285 0|0:0:1,0,0 0|0:0.686:0.41,0.493,0.096 1|0:0.991:0.262,0.485,0.253 0|0:0:1,0,0 0|1:1.392:0.062,0.484,0.454 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.001,0.098,0.902 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.184:0.151,0.513,0.335 1|1:1.235:0.122,0.52,0.358 0|0:0:1,0,0 0|1:0.967:0.276,0.482,0.243 1|1:1.313:0.082,0.523,0.395 0|1:0.793:0.383,0.441,0.176 0|0:0:1,0,0 1|1:1.398:0.043,0.516,0.441 0|0:0:1,0,0 1|1:1.639:0.023,0.315,0.662 1|1:1.788:0.005,0.202,0.793 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.913:0.303,0.48,0.216 1|1:1.598:0.071,0.259,0.669 1|1:1.775:0.004,0.218,0.779 1|1:2:0,0,1 1|1:1.546:0.038,0.379,0.584 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.678:0.023,0.275,0.702 1|1:1.447:0.118,0.318,0.565 1|1:2:0,0,1 1|0:0.821:0.333,0.513,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0,0.039,0.961 1|1:2:0,0,1 1|0:0.974:0.267,0.491,0.241 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.047:0.245,0.463,0.292 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.188:0.089,0.634,0.277 1|1:2:0,0,1 1|1:1.809:0.009,0.173,0.818 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.769:0.017,0.196,0.786 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.965:0.272,0.491,0.237 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.719:0.379,0.524,0.097 0|0:0.162:0.845,0.148,0.007 0|0:0:1,0,0 0|0:0.176:0.832,0.159,0.008 0|0:0:1,0,0 1|1:2:0,0,1 +3 17257967 SNP-3.17256776. C A . PASS AR2=0.981;DR2=0.985;AF=0.408 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.29:0.728,0.254,0.018 0|0:0.155:0.851,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.772,0.213,0.015 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.08,0.001 0|0:0.042:0.959,0.041,0 0|1:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.246:0.769,0.215,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.872,0.123,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.437:0.626,0.311,0.063 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.185:0.828,0.16,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.756,0.227,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.795,0.194,0.011 0|0:0.246:0.769,0.216,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.161:0.847,0.145,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.179:0.828,0.165,0.007 0|0:0.263:0.755,0.228,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.172:0.835,0.157,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.845,0.149,0.007 +3 17260017 SNP-3.17258826. A G . PASS AR2=0.995;DR2=0.996;AF=0.337 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.009,0.198,0.793 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.001,0.072,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.8:0.014,0.172,0.814 0|1:1:0,1,0 1|1:1.862:0.001,0.136,0.863 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.825:0.011,0.153,0.836 1|1:1.922:0.003,0.072,0.925 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.994:0,0.006,0.994 0|1:1:0,1,0 1|1:1.923:0.001,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17260323 SNP-3.17259132. A G . PASS AR2=1;DR2=1;AF=0.228 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17261757 SNP-3.17260566. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17264492 SNP-3.17263301. A G . PASS AR2=0.995;DR2=0.995;AF=0.261 GT:DS:GP 0|0:0:1,0,0 1|0:0.955:0.275,0.495,0.23 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|0:1:0,1,0 1|1:1.931:0.002,0.065,0.933 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.96:0,0.039,0.96 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17265206 SNP-3.17264015. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.976:0.024,0.976,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17266180 SNP-3.17264989. C A . PASS AR2=0.999;DR2=0.999;AF=0.27 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.788:0.02,0.173,0.807 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17266653 SNP-3.17265462. C A . PASS AR2=0.989;DR2=0.991;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.9:0.003,0.095,0.902 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.747:0.018,0.217,0.765 0|0:0:1,0,0 1|1:1.512:0.032,0.424,0.544 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.751:0.016,0.217,0.767 1|0:1:0,1,0 1|1:1.963:0,0.036,0.964 0|1:1:0,1,0 1|1:1.804:0.008,0.18,0.812 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.764:0.015,0.207,0.779 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.009,0.131,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.812:0.01,0.168,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.007,0.144,0.849 0|0:0:1,0,0 +3 17267380 SNP-3.17266189. C A . PASS AR2=1;DR2=1;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17268078 SNP-3.17266887. C A . PASS AR2=0.996;DR2=0.996;AF=0.408 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.746,0.235,0.02 1|0:1:0,1,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.892,0.107,0.002 0|0:0.161:0.846,0.147,0.007 0|0:0:1,0,0 0|0:0.212:0.799,0.189,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17270402 SNP-3.17269211. C A . PASS AR2=0.996;DR2=0.996;AF=0.38 GT:DS:GP 0|0:0.052:0.948,0.051,0 1|1:2:0,0,1 0|1:0.998:0.002,0.998,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.998:0.002,0.998,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 1|1:1.953:0,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.986:0.014,0.986,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.998:0,0.002,0.998 0|1:0.994:0.019,0.968,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.879,0.112,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.001,0.079,0.92 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.969 0|0:0:1,0,0 +3 17272125 SNP-3.17270934. A G . PASS AR2=0.996;DR2=0.997;AF=0.353 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.005,0.085,0.911 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.39:0.648,0.313,0.039 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.001,0.077,0.922 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17273290 SNP-3.17272099. C A . PASS AR2=0.97;DR2=0.979;AF=0.311 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.002,0.061,0.938 1|1:1.926:0.003,0.068,0.929 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.537:0.465,0.532,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.915:0.002,0.081,0.917 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.516:0.039,0.406,0.555 1|1:2:0,0,1 1|0:0.622:0.38,0.617,0.003 1|1:1.858:0.005,0.131,0.863 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.433:0.024,0.519,0.457 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.906:0.002,0.09,0.908 1|1:2:0,0,1 1|1:1.843:0.004,0.15,0.847 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.975:0.126,0.774,0.101 0|1:1.44:0.059,0.442,0.499 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.873:0.008,0.111,0.881 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.009,0.168,0.822 0|0:0:1,0,0 1|1:1.902:0.003,0.092,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.549:0.078,0.295,0.627 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.015,0.195,0.791 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.015,0.16,0.825 0|1:1:0,1,0 1|1:1.673:0.042,0.244,0.714 1|1:2:0,0,1 1|1:1.907:0.003,0.087,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.559:0.055,0.332,0.613 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17273462 SNP-3.17272271. A G . PASS AR2=0.978;DR2=0.984;AF=0.225 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.641:0.035,0.29,0.676 1|1:1.772:0.004,0.219,0.777 1|1:1.755:0.016,0.212,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.445:0.104,0.348,0.548 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.649:0.031,0.289,0.68 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.56:0.05,0.34,0.61 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.646:0.031,0.292,0.677 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.029,0.278,0.693 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.656:0.031,0.282,0.687 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17275994 SNP-3.17274803. C A . PASS AR2=0.99;DR2=0.991;AF=0.419 GT:DS:GP 0|0:0.069:0.932,0.067,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.291:0.722,0.266,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.089,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.13,0.005 0|0:0.167:0.841,0.151,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0.151:0.853,0.143,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.184:0.823,0.169,0.007 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0.2:0.805,0.19,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0.241:0.769,0.221,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.741,0.22,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.976,0.024,0 +3 17276108 SNP-3.17274917. A G . PASS AR2=0.89;DR2=0.916;AF=0.419 GT:DS:GP 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.436:0.076,0.411,0.513 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.997:0.212,0.579,0.209 1|1:2:0,0,1 1|0:1.227:0.054,0.664,0.282 0|0:0:1,0,0 0|1:0.732:0.391,0.487,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.637:0.463,0.438,0.099 0|0:0:1,0,0 1|1:1.514:0.055,0.377,0.568 0|0:0:1,0,0 0|1:0.904:0.283,0.53,0.187 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.883:0.315,0.487,0.198 1|0:1.57:0.023,0.384,0.593 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.031:0.177,0.614,0.209 0|0:0:1,0,0 1|0:1.583:0.029,0.36,0.612 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.917:0.295,0.492,0.213 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.56:0.051,0.338,0.611 1|1:2:0,0,1 1|1:1.577:0.058,0.306,0.636 1|1:2:0,0,1 0|1:1.41:0.088,0.415,0.498 1|1:2:0,0,1 1|1:1.887:0.001,0.111,0.888 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.377:0.037,0.549,0.414 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.569:0.058,0.315,0.627 1|0:1.259:0.143,0.455,0.402 0|1:1.581:0.054,0.31,0.636 1|1:1.888:0.003,0.105,0.891 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.233:0.153,0.46,0.387 1|0:1.255:0.146,0.453,0.401 1|1:1.653:0.031,0.285,0.684 1|1:2:0,0,1 1|1:1.484:0.028,0.461,0.512 1|1:1.558:0.063,0.316,0.621 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.577:0.447,0.53,0.023 0|0:0:1,0,0 1|1:1.46:0.092,0.357,0.551 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.421:0.086,0.407,0.507 0|0:0:1,0,0 1|1:1.869:0.002,0.127,0.871 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.703:0.022,0.253,0.725 0|0:0:1,0,0 0|1:1.211:0.161,0.466,0.373 0|0:0:1,0,0 1|1:1.917:0.003,0.078,0.919 1|1:1.888:0.003,0.105,0.891 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.71:0.411,0.468,0.121 0|0:0:1,0,0 1|1:1.715:0.023,0.239,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.367:0.099,0.435,0.466 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.814:0.36,0.467,0.173 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.489:0.065,0.38,0.555 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0.001,0.115,0.884 1|1:1.854:0.004,0.139,0.857 1|0:0.831:0.334,0.5,0.166 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.413:0.634,0.32,0.046 0|0:0.418:0.627,0.328,0.045 1|0:1.132:0.141,0.586,0.273 1|1:1.907:0.001,0.09,0.909 1|1:2:0,0,1 1|1:1.765:0.01,0.214,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.007,0.104,0.888 0|0:0:1,0,0 1|1:1.536:0.052,0.361,0.587 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.542:0.532,0.395,0.074 1|1:2:0,0,1 1|1:1.888:0.003,0.105,0.891 1|1:1.885:0.012,0.091,0.897 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.972:0.234,0.561,0.206 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.508:0.557,0.378,0.065 0|0:0:1,0,0 1|0:0.807:0.343,0.506,0.15 1|1:1.365:0.104,0.427,0.469 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.886:0.315,0.484,0.201 0|0:0:1,0,0 1|1:2:0,0,1 +3 17276840 SNP-3.17275649. A G . PASS AR2=0.992;DR2=0.995;AF=0.249 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.327:0.713,0.246,0.04 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.474:0.559,0.408,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.377:0.661,0.302,0.038 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17277250 SNP-3.17276059. A G . PASS AR2=0.99;DR2=0.992;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.188:0.831,0.15,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.02:0.98,0.02,0 0|0:0.027:0.973,0.026,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.878,0.122,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.691:0.31,0.689,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.342:0.659,0.34,0.001 0|0:0:1,0,0 0|0:0.258:0.743,0.256,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.45:0.607,0.336,0.057 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.999,0.001,0 0|0:0:1,0,0 +3 17278027 SNP-3.17276836. C A . PASS AR2=0.956;DR2=0.967;AF=0.288 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.599:0.067,0.268,0.666 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.299:0.125,0.451,0.424 0|0:0:1,0,0 0|1:1.285:0.125,0.464,0.411 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.525:0.03,0.414,0.555 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.16:0.172,0.496,0.332 1|1:2:0,0,1 0|1:1.24:0.148,0.463,0.388 0|1:1.293:0.139,0.429,0.432 1|1:2:0,0,1 1|1:1.436:0.066,0.432,0.502 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.54:0.057,0.346,0.597 1|1:1.57:0.02,0.39,0.59 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.306:0.116,0.462,0.422 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.903:0.001,0.094,0.905 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.652:0.015,0.318,0.667 1|1:1.948:0.001,0.051,0.949 1|1:1.694:0.009,0.288,0.703 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.887:0.004,0.105,0.891 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.819:0.004,0.173,0.823 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:1.95:0.002,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.148:0.178,0.497,0.326 0|0:0:1,0,0 +3 17278691 SNP-3.17277500. A G . PASS AR2=0.991;DR2=0.993;AF=0.25 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.062,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.537:0.464,0.535,0.001 0|0:0:1,0,0 1|0:0.673:0.342,0.642,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.195:0.004,0.796,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17278757 SNP-3.17277566. A G . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.994:0.006,0.994,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17279274 SNP-3.17278083. C A . 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A G . PASS AR2=0.915;DR2=0.937;AF=0.295 GT:DS:GP 1|1:1.817:0.008,0.167,0.825 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.346:0.104,0.446,0.45 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.009,0.069,0.922 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.328:0.117,0.439,0.445 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.403:0.64,0.317,0.043 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.457:0.048,0.446,0.505 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.438:0.079,0.405,0.517 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.346:0.097,0.46,0.443 0|1:1.25:0.143,0.464,0.393 1|1:1.89:0.004,0.102,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.521:0.058,0.362,0.579 0|0:0:1,0,0 1|0:0.826:0.347,0.481,0.172 1|1:1.603:0.025,0.347,0.628 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.021:0.241,0.497,0.262 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.007,0.118,0.875 1|0:1.316:0.125,0.435,0.44 1|1:1.535:0.057,0.351,0.592 0|0:0:1,0,0 1|0:1.091:0.207,0.495,0.298 1|0:1.06:0.222,0.497,0.282 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.674:0.03,0.266,0.704 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.201:0.165,0.468,0.367 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.46:0.586,0.368,0.046 0|0:0:1,0,0 0|1:1.295:0.101,0.502,0.396 1|1:1.614:0.042,0.302,0.656 1|1:1.48:0.071,0.378,0.551 1|1:1.663:0.021,0.294,0.685 1|1:1.248:0.142,0.468,0.39 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.64,0.319,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.561:0.052,0.336,0.613 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.759:0.02,0.201,0.779 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.845:0.005,0.145,0.85 0|0:0:1,0,0 1|1:1.679:0.022,0.278,0.701 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.366:0.095,0.444,0.461 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.885:0.004,0.107,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.036,0.26,0.704 0|0:0.458:0.591,0.359,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17285432 SNP-3.17284241. A G . PASS AR2=0.987;DR2=0.988;AF=0.278 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.911:0.255,0.58,0.166 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.999:0.225,0.55,0.225 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.106:0.896,0.101,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.064:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.91,0.087,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.697,0.3,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.914:0.001,0.084,0.915 1|1:1.88:0.005,0.11,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.309:0.121,0.449,0.43 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17287490 SNP-3.17286299. A G . PASS AR2=0.95;DR2=0.961;AF=0.312 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.588:0.04,0.332,0.628 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0.098:0.905,0.093,0.002 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.202:0.805,0.189,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.554:0.024,0.397,0.578 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.478:0.058,0.406,0.536 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.648:0.028,0.296,0.676 1|1:1.599:0.042,0.316,0.642 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.259:0.138,0.465,0.397 1|1:1.527:0.054,0.364,0.582 1|1:2:0,0,1 0|1:1.405:0.091,0.413,0.496 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.659:0.022,0.297,0.681 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.098:0.905,0.093,0.002 0|1:1.188:0.194,0.423,0.382 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.026,0.206,0.768 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.742:0.02,0.219,0.761 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.558:0.004,0.434,0.562 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.098:0.905,0.093,0.002 0|0:0.098:0.905,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.01,0.156,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.491:0.063,0.382,0.555 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.921,0.079,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.507:0.071,0.352,0.578 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.845:0.01,0.136,0.855 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.008,0.192,0.8 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.002,0.048,0.95 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:1.82:0.014,0.152,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.945 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17294126 SNP-3.17292935. A G . PASS AR2=0.992;DR2=0.992;AF=0.488 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.991:0.254,0.5,0.246 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.088:0.206,0.501,0.293 1|1:0.991:0.254,0.5,0.246 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17295161 SNP-3.17293970. A G . PASS AR2=0.973;DR2=0.979;AF=0.245 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.004,0.097,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.865:0.005,0.125,0.87 0|0:0.13:0.875,0.119,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.822:0.009,0.161,0.831 0|0:0:1,0,0 1|1:1.895:0.004,0.097,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.826:0.008,0.158,0.834 0|0:0:1,0,0 1|1:1.849:0.008,0.136,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.005,0.125,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:1.872:0.004,0.121,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.315:0.702,0.282,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.815,0.174,0.011 0|0:0:1,0,0 0|0:0.099:0.904,0.092,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.972:0.079,0.871,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:1.586:0.016,0.381,0.603 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.226:0.784,0.206,0.01 1|0:0.512:0.536,0.416,0.048 0|0:0:1,0,0 0|0:0.454:0.614,0.318,0.068 0|0:0.219:0.786,0.209,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.199:0.81,0.18,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.005,0.125,0.87 0|0:0:1,0,0 0|0:0.183:0.828,0.161,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.786,0.204,0.01 0|0:0:1,0,0 +3 17295666 SNP-3.17294475. A G . PASS AR2=0.988;DR2=0.991;AF=0.242 GT:DS:GP 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.815:0.009,0.167,0.824 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.013,0.244,0.743 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.382:0.8,0.018,0.182 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.566:0.057,0.319,0.624 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.008,0.17,0.822 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.005,0.135,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17295669 SNP-3.17294478. A G . PASS AR2=0.975;DR2=0.981;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.636:0.015,0.333,0.652 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.535:0.04,0.385,0.575 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.008,0.145,0.847 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.035,0.372,0.593 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:0.891:0.11,0.889,0.001 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.008,0.148,0.844 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.68:0.008,0.305,0.688 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.01,0.171,0.82 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.627:0.023,0.326,0.65 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.003,0.113,0.884 1|1:1.513:0.046,0.394,0.559 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.639:0.032,0.296,0.672 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.866:0.006,0.121,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 1|1:1.76:0.016,0.207,0.776 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 +3 17297158 SNP-3.17295967. C A . PASS AR2=0.953;DR2=0.961;AF=0.252 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.282:0.737,0.245,0.018 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.938,0.06,0.003 0|0:0.162:0.845,0.147,0.007 0|0:0:1,0,0 0|0:0.209:0.802,0.187,0.011 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.259:0.757,0.226,0.017 0|0:0:1,0,0 0|0:0.276:0.743,0.239,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0.084:0.919,0.078,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.921 1|1:2:0,0,1 0|0:0.165:0.85,0.135,0.015 1|1:1.661:0.021,0.298,0.681 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.124:0.179,0.517,0.304 0|0:0:1,0,0 0|0:0.058:0.944,0.053,0.003 1|1:1.798:0.009,0.185,0.806 0|0:0.05:0.952,0.046,0.002 1|0:1.268:0.088,0.555,0.357 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.556:0.049,0.347,0.604 0|0:0:1,0,0 1|1:1.76:0.011,0.219,0.77 0|0:0:1,0,0 0|1:1.034:0.04,0.886,0.074 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.86,0.13,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.088:0.921,0.071,0.008 0|1:0.925:0.262,0.55,0.187 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.284:0.722,0.271,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.006,0.145,0.849 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.005,0.151,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.01,0.262,0.728 1|1:2:0,0,1 1|1:1.913:0.002,0.082,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.944,0.054,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.827:0.01,0.154,0.837 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.036,0 0|0:0.255:0.758,0.228,0.013 0|0:0:1,0,0 0|0:0.21:0.801,0.188,0.011 0|0:0:1,0,0 0|0:0.224:0.788,0.199,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.748,0.235,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.761:0.006,0.227,0.767 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.401:0.651,0.297,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.013,0.145,0.842 1|1:1.938:0.002,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17299097 SNP-3.17297906. C A . PASS AR2=0.986;DR2=0.987;AF=0.362 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.002 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0.036:0.964,0.036,0 0|0:0.088:0.915,0.083,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.861:0.012,0.115,0.873 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.861:0.332,0.474,0.194 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.007,0.115,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.075,0.924 0|0:0.336:0.676,0.312,0.012 1|1:1.935:0,0.065,0.935 1|1:2:0,0,1 1|1:1.922:0.001,0.075,0.924 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0,0.105,0.895 1|1:1.935:0.001,0.062,0.937 1|1:1.897:0.001,0.101,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.002,0.069,0.929 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.003,0.127,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.001,0.133,0.866 1|1:1.97:0.001,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.06,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17299249 SNP-3.17298058. C A . PASS AR2=0.987;DR2=0.989;AF=0.341 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.003,0.071,0.926 1|1:2:0,0,1 1|1:1.793:0.01,0.187,0.803 1|1:1.906:0.002,0.089,0.909 1|1:2:0,0,1 1|1:1.874:0.005,0.117,0.879 0|0:0:1,0,0 1|1:1.861:0.006,0.128,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.966 1|1:2:0,0,1 1|1:1.929:0.002,0.068,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0.287:0.713,0.287,0 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.918,0.082,0 0|1:1:0,1,0 1|1:1.839:0.01,0.141,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.01,0.181,0.809 1|1:1.913:0.002,0.084,0.914 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.006,0.148,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.811:0.01,0.169,0.821 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.003:0.274,0.449,0.277 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.008,0.18,0.811 0|0:0:1,0,0 +3 17301282 SNP-3.17300091. A G . PASS AR2=0.976;DR2=0.982;AF=0.311 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.621:0.036,0.306,0.658 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.64:0.033,0.295,0.673 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.6:0.041,0.318,0.641 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.619:0.037,0.307,0.656 1|1:1.651:0.019,0.311,0.67 1|1:1.709:0.02,0.251,0.729 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.662:0.029,0.281,0.691 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.034,0.297,0.669 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.604:0.041,0.314,0.645 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.038:0.963,0.037,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.007,0.133,0.86 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.643:0.032,0.292,0.675 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.642:0.032,0.294,0.674 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17301393 SNP-3.17300202. C A . PASS AR2=0.993;DR2=0.994;AF=0.421 GT:DS:GP 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.822,0.169,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 1|0:0.242:0.774,0.21,0.016 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.169:0.839,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.772,0.218,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.064,0.001 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.104:0.9,0.097,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17302249 SNP-3.17301058. C A . PASS AR2=0.998;DR2=0.999;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.418:0.591,0.399,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.008:0.011,0.97,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17302840 SNP-3.17301649. A G . PASS AR2=1;DR2=1;AF=0.257 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17302866 SNP-3.17301675. A G . PASS AR2=0.99;DR2=0.993;AF=0.213 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.471:0.077,0.374,0.548 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.65:0.02,0.311,0.67 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.658:0.029,0.284,0.687 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.883:0.003,0.11,0.886 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17307301 SNP-3.17306110. A G . PASS AR2=0.935;DR2=0.955;AF=0.223 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.196:0.166,0.471,0.362 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.494:0.566,0.374,0.06 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.859,0.136,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.75,0.242,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.663:0.432,0.473,0.095 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.704:0.454,0.389,0.158 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.885,0.114,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.276:0.751,0.222,0.027 0|0:0.209:0.81,0.17,0.019 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.384:0.658,0.301,0.041 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.381:0.079,0.461,0.46 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.53:0.534,0.402,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.461:0.595,0.35,0.055 0|0:0.271:0.745,0.238,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.175:0.176,0.473,0.351 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.394:0.645,0.315,0.04 0|0:0:1,0,0 1|0:0.778:0.322,0.579,0.1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.553:0.524,0.4,0.076 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.295:0.728,0.249,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.351:0.689,0.271,0.04 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.717:0.439,0.405,0.156 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17308836 SNP-3.17307645. A G . PASS AR2=0.977;DR2=0.982;AF=0.38 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.722:0.348,0.581,0.071 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.342:0.68,0.297,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.315:0.715,0.255,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.545:0.531,0.392,0.077 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.163:0.09,0.657,0.253 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.733:0.415,0.437,0.148 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.89:0.301,0.508,0.191 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.332:0.697,0.274,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.264:0.756,0.225,0.02 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.016,0.144,0.84 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.201:0.815,0.169,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.131:0.873,0.123,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.798:0.381,0.439,0.18 0|0:0:1,0,0 +3 17309669 SNP-3.17308478. A G . 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C A . PASS AR2=0.996;DR2=0.997;AF=0.402 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.877,0.123,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.268:0.758,0.216,0.026 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.812,0.18,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.803,0.179,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17310245 SNP-3.17309054. C A . PASS AR2=0.996;DR2=0.997;AF=0.379 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.082,0.002 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 0|0:0.17:0.836,0.158,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.077:0.924,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17310890 SNP-3.17309699. C A . PASS AR2=0.971;DR2=0.978;AF=0.421 GT:DS:GP 0|0:0:1,0,0 1|1:1.593:0.042,0.323,0.635 1|1:1.593:0.042,0.323,0.635 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.225:0.785,0.205,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.76,0.225,0.015 0|0:0.237:0.777,0.208,0.015 0|0:0.266:0.752,0.231,0.018 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.065:0.935,0.064,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.787,0.201,0.012 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0.192:0.819,0.17,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.518:0.533,0.417,0.05 0|0:0:1,0,0 0|0:0.269:0.742,0.247,0.011 0|0:0:1,0,0 0|0:0.078:0.923,0.077,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.894:0.179,0.748,0.073 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.504:0.544,0.408,0.048 1|1:2:0,0,1 1|1:1.914:0.001,0.084,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.848,0.148,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.884:0.006,0.104,0.89 0|0:0:1,0,0 0|1:0.29:0.731,0.249,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.206:0.802,0.191,0.008 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.238:0.776,0.209,0.015 0|0:0:1,0,0 0|0:0.267:0.751,0.23,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.776,0.209,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17311820 SNP-3.17310629. C A . PASS AR2=0.994;DR2=0.995;AF=0.358 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.829:0.171,0.829,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.012,0.194,0.795 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.87:0.003,0.125,0.873 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:1.859:0.002,0.137,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.004,0.1,0.896 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.002,0.041,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.002,0.093,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.005,0.094,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.005,0.093,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17312803 SNP-3.17311612. C A . PASS AR2=0.985;DR2=0.987;AF=0.333 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.003,0.087,0.91 0|0:0:1,0,0 1|1:1.795:0.011,0.184,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.822:0.005,0.169,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.009,0.155,0.836 1|1:1.786:0.011,0.193,0.796 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0.01,0.177,0.813 1|1:2:0,0,1 1|1:1.835:0.006,0.153,0.841 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.002,0.068,0.93 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.86:0.005,0.13,0.865 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.815:0.01,0.165,0.825 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.838:0.007,0.148,0.845 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.787:0.014,0.184,0.801 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.008,0.146,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.712:0.017,0.254,0.729 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.01,0.165,0.824 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.006,0.135,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.003,0.087,0.91 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17313282 SNP-3.17312091. A G . PASS AR2=0.955;DR2=0.968;AF=0.562 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0,0.067,0.933 0|1:1.073:0.002,0.923,0.075 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0,0.227,0.773 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.547:0.052,0.35,0.598 1|1:1.542:0.052,0.353,0.595 1|0:1.446:0.099,0.356,0.545 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.993:0,0.007,0.993 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.55:0.051,0.348,0.601 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0,0.061,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.002,0.045,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.982:0,0.018,0.982 1|1:1.99:0,0.01,0.99 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.744:0.256,0.744,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.767:0.004,0.224,0.771 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.921:0.003,0.073,0.924 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.957:0.001,0.042,0.957 1|1:2:0,0,1 1|1:1.565:0.048,0.34,0.612 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.482:0.053,0.411,0.536 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.481:0.092,0.336,0.573 1|1:1.55:0.051,0.348,0.601 0|0:0:1,0,0 1|1:1.565:0.047,0.34,0.613 1|1:1.552:0.05,0.347,0.603 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.87:0.001,0.127,0.871 1|1:2:0,0,1 1|1:1.96:0,0.04,0.96 0|1:1:0,1,0 1|1:1.546:0.052,0.35,0.598 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.538:0.053,0.355,0.592 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0,0.085,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.576:0.046,0.332,0.622 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.003,0.066,0.931 1|1:2:0,0,1 1|1:1.549:0.054,0.344,0.603 1|1:1.615:0.038,0.308,0.653 1|1:1.538:0.053,0.355,0.592 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17315125 SNP-3.17313934. A G . PASS AR2=0.991;DR2=0.992;AF=0.239 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.228:0.785,0.201,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.798:0.01,0.182,0.808 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.006:0.088,0.817,0.094 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.94:0.089,0.881,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.841:0.006,0.147,0.847 0|0:0.097:0.904,0.096,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.785,0.201,0.013 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.829:0.008,0.156,0.837 0|0:0.015:0.986,0.014,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17316053 SNP-3.17314862. C A . PASS AR2=0.985;DR2=0.987;AF=0.423 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.063:0,0.937,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.012:0.988,0.012,0 0|0:0.096:0.907,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.86,0.135,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.798,0.188,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.135:0.869,0.127,0.004 0|0:0.125:0.878,0.118,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.129:0.875,0.12,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.21:0.795,0.201,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.142:0.861,0.136,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.109:0.894,0.104,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.143:0.864,0.129,0.007 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.127:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0.124:0.878,0.121,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.096,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.134:0.869,0.128,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.886,0.11,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.114:0.89,0.106,0.004 1|1:2:0,0,1 0|0:0.381:0.661,0.297,0.042 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0.11:0.893,0.103,0.003 1|1:2:0,0,1 0|0:0:1,0,0 +3 17316246 SNP-3.17315055. C A . PASS AR2=1;DR2=1;AF=0.385 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17316358 SNP-3.17315167. A G . PASS AR2=0.996;DR2=0.996;AF=0.269 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.701,0.294,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.982:0.024,0.969,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.87:0.007,0.116,0.877 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.148,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17316524 SNP-3.17315333. A G . PASS AR2=1;DR2=1;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.98:0.02,0.979,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17316583 SNP-3.17315392. A G . PASS AR2=0.993;DR2=0.994;AF=0.358 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.75:0.251,0.748,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.003,0.153,0.844 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.006,0.227,0.767 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0.164:0.836,0.164,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.817:0.187,0.809,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.071,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.004,0.142,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.834:0.002,0.162,0.836 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 17316704 SNP-3.17315513. C A . PASS AR2=0.996;DR2=0.996;AF=0.361 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0.001,0.064,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.955,0.044,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.962 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0,0.05,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.963:0,0.037,0.963 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 1|1:1.937:0.001,0.061,0.938 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.98:0,0.019,0.981 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0,0.072,0.928 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.001,0.043,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.004,0.085,0.912 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17316770 SNP-3.17315579. C A . PASS AR2=0.971;DR2=0.976;AF=0.436 GT:DS:GP 0|0:0.069:0.932,0.066,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.154:0.851,0.144,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.188:0.822,0.167,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.478:0.001,0.521,0.479 0|1:1.041:0.017,0.924,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.148,0.006 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.172:0.844,0.141,0.016 0|0:0.169:0.839,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.267:0.748,0.238,0.015 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.138:0.867,0.129,0.005 0|0:0.158:0.849,0.145,0.006 0|0:0.147:0.859,0.135,0.006 0|0:0.242:0.775,0.209,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.085,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.145:0.861,0.133,0.006 1|0:1:0,1,0 0|0:0.243:0.772,0.213,0.015 0|0:0:1,0,0 0|0:0.207:0.803,0.188,0.01 0|0:0.287:0.737,0.238,0.025 0|0:0.343:0.683,0.292,0.025 0|0:0:1,0,0 0|0:0.438:0.564,0.434,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.896,0.1,0.004 0|0:0.136:0.869,0.125,0.005 0|0:0.132:0.871,0.125,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.993:0.018,0.971,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.255:0.764,0.216,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.117:0.887,0.109,0.004 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.881,0.115,0.004 0|0:0.253:0.757,0.232,0.011 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.809,0.181,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0.094:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0.026:0.974,0.026,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.033:0.968,0.032,0 0|0:0.103:0.9,0.097,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17316808 SNP-3.17315617. C A . PASS AR2=0.982;DR2=0.987;AF=0.43 GT:DS:GP 0|0:0.087:0.915,0.083,0.002 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.792,0.196,0.012 0|0:0:1,0,0 0|0:0.108:0.893,0.106,0.001 0|1:1:0,1,0 0|0:0.262:0.754,0.229,0.016 0|0:0.367:0.662,0.31,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.725,0.253,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.269:0.748,0.234,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.132:0.875,0.119,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.678:0.33,0.662,0.008 0|0:0.258:0.759,0.224,0.017 1|1:2:0,0,1 0|0:0.194:0.815,0.175,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.464:0.078,0.38,0.542 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.281:0.739,0.24,0.02 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 +3 17317090 SNP-3.17315899. A G . PASS AR2=0.998;DR2=0.998;AF=0.353 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.941:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17317120 SNP-3.17315929. C A . PASS AR2=0.999;DR2=0.999;AF=0.345 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.099:0.007,0.887,0.106 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17317156 SNP-3.17315965. C A . PASS AR2=0.997;DR2=0.998;AF=0.414 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.809,0.181,0.011 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.652,0.347,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17317611 SNP-3.17316420. A G . PASS AR2=0.878;DR2=0.902;AF=0.216 GT:DS:GP 0|0:0.652:0.473,0.403,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.896:0.315,0.475,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.945:0.055,0.945,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.082:0.003,0.911,0.085 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.442:0.582,0.393,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.005:0.247,0.501,0.252 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.784:0.372,0.471,0.156 1|1:2:0,0,1 1|0:0.742:0.404,0.45,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.789:0.356,0.5,0.145 0|0:0:1,0,0 1|0:1.053:0.204,0.539,0.257 0|0:0:1,0,0 0|1:0.696:0.389,0.526,0.085 0|1:0.799:0.37,0.462,0.168 1|0:0.672:0.346,0.635,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.028:0.23,0.512,0.258 0|0:0.632:0.478,0.412,0.11 0|0:0.306:0.698,0.298,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.026:0.242,0.49,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.608:0.484,0.424,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.177,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.619:0.413,0.555,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.829,0.164,0.006 0|0:0:1,0,0 0|1:0.625:0.442,0.49,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.657:0.418,0.507,0.075 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.948,0.048,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.784:0.373,0.471,0.156 0|0:0:1,0,0 0|1:0.936:0.27,0.524,0.206 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.343:0.676,0.305,0.019 0|0:0:1,0,0 0|0:0.126:0.876,0.123,0.002 0|0:0.084:0.917,0.082,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.422:0.639,0.3,0.061 1|0:0.485:0.546,0.424,0.031 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.514:0.565,0.357,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.127:0.879,0.115,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.264:0.743,0.25,0.007 0|0:0.349:0.672,0.307,0.021 0|0:0.183:0.825,0.167,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 1|0:0.802:0.338,0.521,0.141 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.49:0.555,0.401,0.044 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.666:0.432,0.471,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.869,0.125,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.749:0.374,0.503,0.123 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.028:0.24,0.492,0.268 1|1:2:0,0,1 0|0:0.89:0.311,0.487,0.201 1|0:0.993:0.258,0.492,0.251 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 +3 17323813 SNP-3.17322622. A G . PASS AR2=0.949;DR2=0.963;AF=0.331 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.702:0.018,0.261,0.721 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.589:0.018,0.375,0.607 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.938 1|1:1.687:0.025,0.263,0.712 1|1:1.52:0.058,0.364,0.578 1|1:1.894:0.002,0.103,0.895 1|1:1.691:0.025,0.258,0.716 0|1:1.215:0.117,0.55,0.333 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.263:0.041,0.655,0.304 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.64:0.025,0.31,0.665 1|1:1.761:0.014,0.212,0.775 1|1:1.929:0.001,0.069,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.004,0.122,0.875 1|1:1.942:0.001,0.057,0.943 1|1:1.641:0.033,0.293,0.674 1|1:2:0,0,1 1|1:1.82:0.004,0.173,0.824 1|1:1.632:0.025,0.318,0.657 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.418:0.081,0.42,0.499 0|1:1.29:0.101,0.508,0.391 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.337:0.109,0.445,0.446 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.896,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.015,0.197,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.386:0.639,0.336,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.405:0.049,0.497,0.454 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.002,0.136,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.012,0.203,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.585:0.046,0.323,0.631 1|0:1.43:0.029,0.512,0.459 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.715:0.032,0.22,0.748 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.098:0.907,0.089,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.614:0.041,0.304,0.655 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.577:0.048,0.326,0.626 0|0:0:1,0,0 1|1:2:0,0,1 +3 17328763 SNP-3.17327572. C A . PASS AR2=0.958;DR2=0.959;AF=0.497 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.06:0.222,0.497,0.281 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.008:0.245,0.502,0.253 0|0:0:1,0,0 0|1:1.017:0.242,0.5,0.259 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.055:0.224,0.498,0.279 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.031:0.234,0.5,0.265 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.06:0.222,0.497,0.281 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.154:0.175,0.496,0.329 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.845:0.326,0.503,0.171 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.973:0.264,0.498,0.238 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.047:0.228,0.498,0.275 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.036:0.232,0.499,0.269 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.95:0.271,0.508,0.221 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.059:0.222,0.497,0.281 1|1:2:0,0,1 1|1:0.944:0.275,0.506,0.219 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.047:0.228,0.498,0.275 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.956:0.273,0.497,0.23 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.01:0.244,0.502,0.254 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17329992 SNP-3.17328801. C A . PASS AR2=0.999;DR2=1;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0,0.069,0.931 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17331753 SNP-3.17330562. C A . PASS AR2=0.994;DR2=0.994;AF=0.369 GT:DS:GP 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.05,0.001 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.058,0.001 0|0:0:1,0,0 1|0:0.648:0.399,0.555,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17332696 SNP-3.17331505. A G . PASS AR2=0.981;DR2=0.985;AF=0.373 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.168:0.174,0.483,0.342 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.69:0.499,0.312,0.189 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.946 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.033,0.198,0.77 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0.009,0.227,0.764 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.471:0.675,0.18,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.951 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.156:0.18,0.485,0.336 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.088,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.006,0.141,0.854 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17334445 SNP-3.17333254. C A . PASS AR2=0.997;DR2=0.997;AF=0.401 GT:DS:GP 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.759:0.001,0.239,0.76 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.889,0.105,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.218:0.786,0.211,0.004 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17337378 SNP-3.17336187. C A . PASS AR2=1;DR2=1;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17340602 SNP-3.17339411. A G . PASS AR2=0.969;DR2=0.975;AF=0.333 GT:DS:GP 1|1:1.864:0.005,0.127,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:1.793:0.01,0.187,0.803 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.765:0.014,0.207,0.779 1|1:2:0,0,1 1|1:1.757:0.015,0.213,0.772 1|1:2:0,0,1 1|1:1.826:0.005,0.163,0.831 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.709:0.021,0.25,0.73 1|1:1.721:0.02,0.24,0.741 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.608:0.036,0.32,0.644 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.016,0.22,0.764 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.785:0.011,0.192,0.797 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.851,0.148,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.751:0.016,0.217,0.767 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.781:0.011,0.197,0.792 1|0:1:0,1,0 1|0:1.716:0.019,0.246,0.735 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.36:0.659,0.323,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.789:0.012,0.188,0.801 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.768:0.012,0.208,0.78 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.884:0.01,0.097,0.893 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.413:0.605,0.378,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.011,0.179,0.81 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.832:0.009,0.149,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.002,0.06,0.937 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.015,0.212,0.773 1|1:1.765:0.013,0.209,0.778 1|1:1.756:0.015,0.214,0.771 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17342404 SNP-3.17341213. C A . PASS AR2=0.966;DR2=0.975;AF=0.26 GT:DS:GP 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0.052:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.258:0.088,0.567,0.345 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.785:0.33,0.554,0.116 1|1:1.772:0.004,0.221,0.775 1|0:0.987:0.202,0.608,0.189 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.003,0.153,0.844 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.482:0.014,0.489,0.497 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.915,0.084,0.001 1|0:0.585:0.521,0.374,0.106 1|1:2:0,0,1 0|0:0.293:0.716,0.276,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.482:0.067,0.384,0.549 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0.001,0.071,0.928 1|1:1.947:0.002,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.478:0.078,0.365,0.557 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.426:0.014,0.545,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.003,0.061,0.936 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.001,0.138,0.86 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.111:0.139,0.612,0.249 0|0:0:1,0,0 +3 17343763 SNP-3.17342572. A G . PASS AR2=0.994;DR2=0.996;AF=0.275 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.199:0.086,0.63,0.285 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.887:0.003,0.107,0.89 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.425:0.628,0.319,0.053 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17344512 SNP-3.17343321. C A . PASS AR2=0.981;DR2=0.985;AF=0.317 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.745:0.018,0.219,0.763 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.007,0.148,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.014,0.153,0.833 1|1:1.722:0.02,0.237,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.015,0.148,0.837 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.771:0.014,0.2,0.786 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.892:0.001,0.106,0.893 0|0:0:1,0,0 1|1:1.674:0.024,0.279,0.698 1|1:1.816:0.008,0.169,0.823 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0,0.073,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.005,0.147,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.825:0.017,0.141,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.489:0.065,0.38,0.555 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.749:0.016,0.219,0.765 0|0:0:1,0,0 0|0:0.109:0.906,0.079,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.003,0.043,0.953 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.901:0.004,0.091,0.905 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:1.998:0,0.002,0.998 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.002,0.071,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17349057 SNP-3.17347866. C A . PASS AR2=0.998;DR2=0.999;AF=0.351 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.423:0.59,0.397,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17349725 SNP-3.17348534. C A . PASS AR2=0.986;DR2=0.989;AF=0.368 GT:DS:GP 0|0:0.016:0.984,0.015,0 0|0:0.185:0.834,0.148,0.019 0|0:0.341:0.677,0.305,0.018 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.772,0.224,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.475:0.531,0.464,0.006 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.075:0.929,0.067,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.255:0.749,0.248,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.147,0.006 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.111:0.893,0.104,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.198:0.821,0.16,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0.06:0.941,0.058,0.001 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.201:0.818,0.163,0.019 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17350375 SNP-3.17349184. C A . PASS AR2=0.984;DR2=0.987;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.123:0.04,0.796,0.163 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.005,0.092,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0,0.116,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.02,0.254,0.726 1|1:1.849:0.003,0.145,0.852 1|1:1.575:0.025,0.375,0.6 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.007,0.26,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.075,0.924 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:1.714:0.027,0.232,0.741 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.846,0.154,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.949:0.001,0.049,0.95 1|1:1.849:0.008,0.136,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.939:0.002,0.058,0.941 1|1:1.972:0,0.027,0.973 1|1:1.87:0.005,0.12,0.875 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.952 1|1:1.959:0,0.04,0.96 1|0:1:0,1,0 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.71:0.026,0.238,0.736 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.006,0.16,0.834 0|0:0:1,0,0 +3 17351193 SNP-3.17350002. A G . PASS AR2=0.999;DR2=0.999;AF=0.378 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.826,0.168,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17354614 SNP-3.17353423. A G . PASS AR2=0.971;DR2=0.977;AF=0.307 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.764,0.236,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.191:0.817,0.174,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.873,0.123,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.161:0.847,0.145,0.008 0|1:1:0,1,0 0|0:0.095:0.908,0.09,0.003 0|0:0.139:0.866,0.129,0.005 0|0:0.086:0.916,0.082,0.002 0|1:0.532:0.5,0.468,0.032 0|0:0:1,0,0 0|0:0.13:0.872,0.125,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.049:0.952,0.048,0 0|0:0:1,0,0 0|0:0.199:0.81,0.18,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0.387:0.639,0.336,0.025 0|0:0.296:0.722,0.259,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.251:0.76,0.228,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 0|0:0.151:0.854,0.141,0.005 0|0:0.143:0.862,0.132,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.457:0.572,0.399,0.029 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0.155:0.848,0.15,0.003 0|0:0.165:0.841,0.152,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.202:0.809,0.181,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.936,0.061,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.053:0.95,0.048,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.313:0.706,0.275,0.019 0|0:0.288:0.739,0.234,0.027 0|0:0.225:0.788,0.198,0.013 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 +3 17356355 SNP-3.17355164. A G . PASS AR2=0.982;DR2=0.984;AF=0.283 GT:DS:GP 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|0:0.181:0.819,0.181,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.131:0.871,0.126,0.003 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.944:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:1.694:0.021,0.264,0.715 1|1:1.966:0,0.033,0.966 1|1:1.98:0,0.019,0.98 1|1:1.91:0.002,0.087,0.911 1|1:2:0,0,1 0|0:0.139:0.866,0.129,0.005 0|0:0.121:0.883,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0.149:0.856,0.139,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.875,0.12,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0.149:0.857,0.138,0.005 0|0:0.111:0.893,0.104,0.003 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.061:0.942,0.055,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.873,0.123,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.859,0.135,0.006 0|0:0.162:0.845,0.149,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.844,0.156,0 0|0:0.154:0.852,0.142,0.006 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.855,0.14,0.005 0|0:0.163:0.842,0.153,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.133:0.871,0.125,0.004 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17357038 SNP-3.17355847. A G . PASS AR2=0.874;DR2=0.897;AF=0.374 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.622:0.442,0.494,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.258:0.135,0.471,0.394 1|1:2:0,0,1 0|1:1.03:0.23,0.509,0.261 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.256:0.129,0.487,0.384 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.878:0.221,0.68,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.064:0.219,0.499,0.282 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.123:0.178,0.521,0.301 1|1:1.734:0.02,0.226,0.754 1|1:1.228:0.139,0.493,0.368 0|0:1.1:0.204,0.492,0.304 0|0:0:1,0,0 1|1:1.825:0.004,0.167,0.829 0|1:0.931:0.293,0.482,0.225 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.045:0.234,0.487,0.279 1|0:0.87:0.309,0.512,0.179 1|1:1.684:0.025,0.266,0.709 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.519:0.543,0.396,0.062 1|1:2:0,0,1 1|0:0.91:0.203,0.685,0.113 1|0:1.214:0.143,0.5,0.357 1|1:2:0,0,1 0|0:0.886:0.315,0.484,0.201 1|1:2:0,0,1 1|1:1.41:0.087,0.416,0.497 1|1:1.821:0.006,0.166,0.828 0|1:1.182:0.144,0.531,0.326 1|1:1.572:0.029,0.37,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.795:0.39,0.425,0.185 1|1:2:0,0,1 1|1:1.892:0.002,0.104,0.894 0|0:0:1,0,0 1|1:1.803:0.019,0.159,0.822 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.538:0.05,0.362,0.588 0|0:0.55:0.526,0.399,0.075 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.3:0.125,0.45,0.425 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.484:0.065,0.385,0.55 1|1:1.486:0.068,0.379,0.554 0|0:1.226:0.146,0.481,0.373 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.238:0.157,0.448,0.395 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.463:0.078,0.381,0.541 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.196:0.094,0.616,0.29 1|1:1.479:0.069,0.383,0.548 1|0:1.272:0.126,0.477,0.397 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.126:0.881,0.112,0.007 1|1:2:0,0,1 0|1:1.316:0.088,0.508,0.404 0|1:1.027:0.228,0.518,0.254 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.308:0.12,0.452,0.428 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.895:0.293,0.52,0.188 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.656:0.03,0.284,0.686 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.779:0.38,0.461,0.159 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.793:0.373,0.461,0.166 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.892:0.318,0.473,0.21 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.475:0.583,0.359,0.058 1|0:0.639:0.459,0.444,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.487:0.046,0.42,0.534 0|0:0:1,0,0 0|0:0.374:0.657,0.312,0.031 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.305:0.109,0.477,0.414 1|0:0.828:0.334,0.503,0.163 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.004,0.107,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:1.258:0.139,0.463,0.397 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.08:0.227,0.467,0.306 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.025,0.255,0.721 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.927,0.07,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.463:0.565,0.407,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17357239 SNP-3.17356048. A G . PASS AR2=0.99;DR2=0.993;AF=0.279 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.49:0.043,0.424,0.533 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.118:0.883,0.115,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.731,0.24,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.865,0.131,0.005 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.851,0.145,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0.193:0.814,0.178,0.008 0|0:0:1,0,0 +3 17360156 SNP-3.17358965. A G . PASS AR2=0.987;DR2=0.989;AF=0.343 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.416:0.592,0.4,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.916,0.081,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.892:0.001,0.105,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.001,0.149,0.851 1|1:1.968:0,0.032,0.968 1|1:1.955:0,0.044,0.956 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:1.994:0,0.006,0.994 1|1:1.837:0.009,0.144,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.071,0.928 1|1:1.861:0.002,0.135,0.863 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.832:0.004,0.16,0.836 1|1:1.954:0,0.045,0.955 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.773:0.013,0.201,0.786 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.009,0.169,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:1.909:0.002,0.087,0.911 1|1:1.878:0.004,0.114,0.882 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.075:0.927,0.07,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.001,0.086,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.002,0.109,0.889 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.012,0.193,0.795 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.007,0.146,0.847 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 +3 17360361 SNP-3.17359170. C A . PASS AR2=1;DR2=1;AF=0.348 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17361360 SNP-3.17360169. A G . PASS AR2=0.985;DR2=0.987;AF=0.347 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.005,0.138,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.002,0.061,0.937 1|1:1.908:0.002,0.087,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.009,0.164,0.828 1|1:1.902:0.003,0.092,0.905 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.072:0.929,0.071,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0.011:0.989,0.011,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.096,0.002 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0.168:0.839,0.154,0.007 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.818,0.176,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.886,0.109,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.296:0.734,0.237,0.029 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:1.842:0.004,0.149,0.846 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.003,0.087,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.209:0.809,0.174,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.788,0.186,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.82:0.004,0.172,0.824 1|1:2:0,0,1 1|1:1.878:0.005,0.113,0.882 0|0:0:1,0,0 1|1:2:0,0,1 +3 17363340 SNP-3.17362149. A G . PASS AR2=0.928;DR2=0.947;AF=0.568 GT:DS:GP 1|1:2:0,0,1 0|0:0.534:0.546,0.375,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.309:0.029,0.633,0.338 1|1:1.757:0.017,0.209,0.774 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.363:0.099,0.44,0.461 1|1:2:0,0,1 1|1:1.413:0.082,0.422,0.496 1|1:2:0,0,1 1|1:1.881:0.004,0.112,0.884 1|1:1.803:0.008,0.182,0.81 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.323:0.019,0.64,0.341 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.651:0.025,0.299,0.676 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.963:0,0.036,0.963 1|1:2:0,0,1 1|0:1.509:0.051,0.39,0.56 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.746:0.025,0.204,0.771 0|1:1:0,1,0 1|1:1.687:0.024,0.265,0.711 1|1:1.66:0.019,0.302,0.679 1|1:2:0,0,1 0|1:1.278:0.043,0.637,0.32 1|1:1.913:0.002,0.083,0.915 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.947:0.001,0.052,0.947 1|0:1.286:0.057,0.601,0.342 1|1:2:0,0,1 1|1:1.859:0.004,0.132,0.864 1|1:1.902:0.003,0.093,0.905 1|1:2:0,0,1 1|1:1.953:0,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.305:0.04,0.615,0.345 1|0:1:0,1,0 1|1:1.711:0.017,0.255,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.002,0.088,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.959 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.004,0.165,0.832 1|1:1.957:0,0.042,0.958 1|0:1.133:0.142,0.582,0.276 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.004,0.14,0.856 1|1:2:0,0,1 0|1:1.332:0.034,0.601,0.365 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.509:0.491,0.509,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.668:0.029,0.275,0.696 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.865:0,0.135,0.865 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.867:0.004,0.124,0.872 1|1:1.721:0.018,0.243,0.739 0|1:1.284:0.064,0.587,0.349 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.627:0.027,0.319,0.654 1|1:2:0,0,1 1|1:1.776:0.016,0.192,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.717:0.014,0.256,0.73 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.368:0.106,0.42,0.474 1|1:1.779:0.002,0.218,0.78 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.698:0.024,0.254,0.722 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.133:0.143,0.582,0.276 1|1:1.707:0.023,0.248,0.73 1|1:1.842:0.006,0.146,0.848 1|1:2:0,0,1 1|1:1.531:0.027,0.414,0.558 1|1:1.533:0.057,0.353,0.59 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 1|1:1.62:0.032,0.316,0.652 1|1:1.905:0.003,0.089,0.908 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.889:0.002,0.106,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.593:0.042,0.323,0.635 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17363396 SNP-3.17362205. C A . PASS AR2=0.98;DR2=0.984;AF=0.432 GT:DS:GP 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.26:0.754,0.232,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.442:0.602,0.355,0.044 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.206:0.801,0.191,0.007 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.256:0.761,0.223,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.283:0.739,0.238,0.023 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.798,0.192,0.01 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.838,0.155,0.007 0|1:1:0,1,0 1|0:1.223:0.142,0.493,0.365 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.425:0.623,0.328,0.049 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.432:0.617,0.333,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.722:0.397,0.484,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.126:0.875,0.123,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17363628 SNP-3.17362437. A G . PASS AR2=0.881;DR2=0.893;AF=0.424 GT:DS:GP 1|1:2:0,0,1 1|0:1.196:0.168,0.467,0.364 1|1:2:0,0,1 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.246:0.756,0.243,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.672:0.022,0.283,0.694 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.033:0.226,0.515,0.259 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.972,0.027,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.008,0.156,0.837 1|1:2:0,0,1 1|1:1.816:0.008,0.168,0.824 1|1:2:0,0,1 1|1:1.865:0.005,0.126,0.87 1|0:0.743:0.346,0.565,0.089 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.796:0.365,0.475,0.161 1|0:0.773:0.371,0.486,0.144 1|1:2:0,0,1 0|0:0.2:0.811,0.179,0.011 0|1:1.085:0.212,0.491,0.297 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.814:0.338,0.51,0.152 1|0:0.887:0.29,0.534,0.177 1|1:2:0,0,1 1|0:0.867:0.321,0.491,0.188 1|1:1.2:0.16,0.481,0.36 1|0:0.732:0.405,0.458,0.137 0|1:1.131:0.189,0.49,0.321 0|1:0.837:0.342,0.479,0.179 1|1:1.08:0.193,0.534,0.273 0|1:0.738:0.39,0.483,0.128 0|0:0:1,0,0 1|0:0.834:0.305,0.557,0.138 0|0:0.427:0.616,0.341,0.043 1|1:1.331:0.119,0.431,0.45 1|1:2:0,0,1 1|1:1.901:0.003,0.094,0.904 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.422:0.623,0.333,0.045 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.17:0.174,0.482,0.344 0|0:0.345:0.684,0.286,0.03 0|0:0:1,0,0 1|0:0.985:0.261,0.493,0.246 1|1:1.758:0.008,0.226,0.766 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:1.015:0.249,0.488,0.264 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.595:0.021,0.363,0.616 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.247:0.141,0.471,0.388 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.733:0.391,0.485,0.124 0|0:0:1,0,0 0|0:0.864:0.328,0.48,0.192 0|0:0:1,0,0 0|1:0.979:0.258,0.504,0.238 0|0:0:1,0,0 1|1:0.783:0.374,0.47,0.156 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.872:0.003,0.121,0.876 0|1:0.883:0.314,0.489,0.197 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.098,0.899 1|1:1.803:0.009,0.179,0.812 1|1:1.654:0.028,0.289,0.682 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.12:0.197,0.486,0.317 0|1:0.792:0.356,0.497,0.148 0|0:0.994:0.247,0.513,0.24 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.005,0.148,0.847 1|1:2:0,0,1 1|1:1.893:0.003,0.101,0.896 1|1:1.839:0.006,0.148,0.845 1|1:2:0,0,1 0|1:1.146:0.184,0.486,0.33 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.7:0.425,0.449,0.126 0|1:1.106:0.2,0.495,0.305 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.11:0.198,0.495,0.308 1|1:1.265:0.124,0.487,0.389 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.827:0.343,0.486,0.171 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.006,0.224,0.77 0|0:0:1,0,0 1|1:1.885:0.003,0.108,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.869:0.325,0.481,0.194 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.866:0.327,0.48,0.193 0|1:0.808:0.345,0.501,0.153 1|0:0.864:0.329,0.479,0.192 1|0:0.927:0.288,0.497,0.215 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.018:0.243,0.495,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.21:0.801,0.187,0.011 0|0:0:1,0,0 1|1:2:0,0,1 +3 17368872 SNP-3.17367681. A G . PASS AR2=0.989;DR2=0.992;AF=0.385 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.835,0.157,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.846,0.15,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.387:0.645,0.323,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.902,0.095,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.887,0.109,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.003,0.112,0.885 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 0|0:0.2:0.804,0.192,0.004 1|1:2:0,0,1 0|0:0.391:0.647,0.315,0.038 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.337:0.704,0.255,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17370258 SNP-3.17369067. C A . PASS AR2=0.975;DR2=0.982;AF=0.355 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.881,0.111,0.009 0|0:0:1,0,0 0|0:0.23:0.779,0.212,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.035:0.235,0.496,0.27 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.613:0.032,0.323,0.645 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.028,0.247,0.724 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|0:1:0,1,0 1|1:1.95:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.623:0.535,0.306,0.159 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.817:0.01,0.163,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.847,0.149,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.796,0.19,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.06,0.939 1|1:2:0,0,1 1|0:0.62:0.539,0.302,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.822,0.173,0.006 0|0:0.081:0.923,0.074,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.425:0.053,0.469,0.478 0|0:0:1,0,0 +3 17371659 SNP-3.17370468. C A . PASS AR2=0.984;DR2=0.988;AF=0.323 GT:DS:GP 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.006,0.18,0.814 1|1:1.734:0.011,0.244,0.745 1|1:1.392:0.07,0.468,0.462 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.726:0.014,0.245,0.741 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.002,0.091,0.908 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.485:0.516,0.484,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.794:0.009,0.187,0.803 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.006,0.156,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.004,0.125,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.852:0.005,0.138,0.857 1|1:2:0,0,1 1|1:1.802:0.01,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.005,0.128,0.867 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.016,0.238,0.746 0|0:0:1,0,0 +3 17371724 SNP-3.17370533. A G . PASS AR2=0.993;DR2=0.994;AF=0.243 GT:DS:GP 0|0:0.008:0.992,0.008,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.6:0.461,0.477,0.061 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.952:0.001,0.047,0.952 1|1:1.939:0.002,0.058,0.94 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.91:0.001,0.087,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.798,0.184,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.801,0.182,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17371751 SNP-3.17370560. A G . PASS AR2=0.994;DR2=0.995;AF=0.338 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.067,0.932 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.744:0.018,0.22,0.762 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.07,0.928 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.919:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.823:0.002,0.172,0.825 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0.001,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.004,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.788:0.009,0.193,0.797 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17373470 SNP-3.17372279. A G . PASS AR2=0.927;DR2=0.943;AF=0.557 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.008,0.182,0.81 1|1:1.856:0.005,0.134,0.861 0|0:0.449:0.585,0.381,0.034 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.835:0.007,0.15,0.843 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.005,0.127,0.868 1|1:1.906:0.002,0.09,0.908 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.742:0.006,0.246,0.748 1|1:1.571:0.023,0.382,0.595 1|1:1.855:0.006,0.133,0.861 1|1:2:0,0,1 1|1:1.854:0.006,0.134,0.86 1|1:1.905:0.002,0.091,0.907 1|1:1.672:0.018,0.292,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.002,0.146,0.852 0|1:1.597:0.03,0.343,0.627 0|0:0.854:0.329,0.488,0.183 1|1:2:0,0,1 1|1:1.65:0.031,0.287,0.682 1|1:1.756:0.015,0.213,0.772 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.567:0.029,0.375,0.596 1|1:2:0,0,1 1|1:1.582:0.028,0.363,0.61 1|1:1.593:0.022,0.362,0.616 1|1:1.677:0.029,0.266,0.706 1|1:1.723:0.019,0.239,0.742 1|1:2:0,0,1 1|1:1.93:0.002,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:1.624:0.026,0.323,0.651 1|1:1.709:0.011,0.268,0.721 0|0:0:1,0,0 1|1:1.846:0.007,0.141,0.853 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.579:0.047,0.328,0.625 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.678:0.023,0.276,0.701 1|1:1.836:0.006,0.152,0.842 1|1:2:0,0,1 1|1:1.738:0.015,0.233,0.753 0|1:1.395:0.055,0.496,0.449 1|1:2:0,0,1 1|1:1.73:0.029,0.213,0.758 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.2:0.158,0.483,0.358 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.015,0.228,0.757 1|1:1.569:0.056,0.318,0.625 0|1:1.397:0.089,0.424,0.486 0|1:1.165:0.144,0.546,0.309 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0.005,0.131,0.864 1|1:2:0,0,1 1|1:1.846:0.006,0.143,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.003,0.11,0.886 1|1:1.895:0.003,0.098,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.427:0.034,0.504,0.462 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.005,0.242,0.753 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.491:0.032,0.445,0.523 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 0|0:0:1,0,0 1|0:1.201:0.095,0.608,0.296 0|0:0:1,0,0 1|0:1.712:0.018,0.251,0.73 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.122,0.873 1|1:1.848:0.006,0.14,0.854 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.044,0.956 1|1:1.956:0.001,0.042,0.957 1|1:1.417:0.055,0.474,0.471 1|1:1.68:0.017,0.286,0.697 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.123,0.872 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.009,0.107,0.884 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.483:0.575,0.368,0.058 0|1:0.766:0.356,0.522,0.122 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 +3 17376074 SNP-3.17374883. A G . PASS AR2=0.995;DR2=0.996;AF=0.325 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.006,0.134,0.86 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.897:0.002,0.099,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.587:0.011,0.392,0.598 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.089,0.91 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.007,0.14,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.004,0.093,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17376185 SNP-3.17374994. A G . PASS AR2=0.96;DR2=0.969;AF=0.276 GT:DS:GP 0|0:0:1,0,0 0|0:0.157:0.846,0.151,0.003 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.736:0.018,0.229,0.754 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.266:0.101,0.533,0.366 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.39:0.653,0.303,0.043 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.343:0.687,0.283,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.795,0.201,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.722,0.257,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.288:0.731,0.249,0.019 0|0:0.124:0.878,0.119,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.189:0.816,0.178,0.006 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.337:0.691,0.281,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.703:0.023,0.251,0.726 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.385:0.652,0.311,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.882:0.239,0.639,0.122 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.76:0.015,0.21,0.775 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.639:0.035,0.291,0.674 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.451:0.614,0.321,0.065 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:1.846:0.005,0.144,0.851 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.242:0.08,0.599,0.322 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.356:0.674,0.296,0.03 0|0:0.346:0.685,0.285,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17376429 SNP-3.17375238. A G . PASS AR2=0.997;DR2=0.998;AF=0.336 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.876:0.005,0.114,0.881 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.631:0.035,0.299,0.666 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17381846 SNP-3.17380655. C A . PASS AR2=0.992;DR2=0.993;AF=0.379 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.143:0.862,0.133,0.005 0|0:0:1,0,0 0|0:0.157:0.849,0.145,0.006 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.19:0.819,0.173,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.869,0.126,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.87,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.137:0.868,0.128,0.004 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.843,0.15,0.007 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.105:0.898,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.858,0.137,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17383050 SNP-3.17381859. A G . PASS AR2=1;DR2=1;AF=0.268 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17383188 SNP-3.17381997. C A . PASS AR2=0.995;DR2=0.997;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:1.313:0.139,0.409,0.452 1|0:1.036:0.063,0.838,0.099 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.885:0.003,0.11,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17384655 SNP-3.17383464. C A . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17386362 SNP-3.17385171. A G . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17390430 SNP-3.17389239. A G . PASS AR2=0.997;DR2=0.997;AF=0.267 GT:DS:GP 0|0:0:1,0,0 0|1:1.191:0.157,0.496,0.347 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.955 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.987:0,0.012,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17391793 SNP-3.17390602. C A . PASS AR2=0.996;DR2=0.996;AF=0.342 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.876,0.119,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.712:0.02,0.248,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.004,0.128,0.869 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0,0.047,0.953 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17393979 SNP-3.17392788. C A . PASS AR2=0.994;DR2=0.996;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0.329:0.701,0.27,0.03 0|0:0.331:0.697,0.275,0.028 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.487:0,0.513,0.487 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17394776 SNP-3.17393585. C A . PASS AR2=0.987;DR2=0.99;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0.168:0.838,0.156,0.006 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 0|0:0.094:0.907,0.091,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.118:0.887,0.109,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.001,0.066,0.933 1|1:1.694:0.01,0.286,0.704 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.003,0.146,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.687:0.446,0.421,0.133 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:1.722:0.019,0.24,0.741 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17397474 SNP-3.17396283. C A . PASS AR2=0.986;DR2=0.99;AF=0.354 GT:DS:GP 0|0:0:1,0,0 0|0:0.391:0.651,0.308,0.041 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.346:0.685,0.283,0.031 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.396:0.612,0.379,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1.554:0.016,0.415,0.57 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.742:0.004,0.25,0.746 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.885:0.004,0.108,0.888 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.374:0.664,0.299,0.038 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17399578 SNP-3.17398387. A G . PASS AR2=0.897;DR2=0.922;AF=0.483 GT:DS:GP 1|1:1.602:0.036,0.326,0.638 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.655:0.031,0.283,0.686 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.018,0.213,0.769 1|1:1.682:0.022,0.274,0.704 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.434:0.082,0.402,0.516 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.107:0.175,0.542,0.282 0|0:0:1,0,0 0|1:1.424:0.053,0.47,0.477 0|1:1.241:0.131,0.497,0.372 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.451:0.075,0.398,0.527 1|0:1.517:0.06,0.364,0.577 1|1:1.735:0.017,0.232,0.751 1|1:2:0,0,1 1|1:1.586:0.043,0.329,0.629 1|1:2:0,0,1 1|1:1.668:0.027,0.277,0.696 1|1:1.549:0.051,0.35,0.6 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.016,0.222,0.762 1|1:1.603:0.039,0.32,0.642 1|1:2:0,0,1 1|1:1.534:0.055,0.356,0.589 1|1:1.551:0.049,0.351,0.6 1|1:2:0,0,1 1|1:1.712:0.024,0.24,0.736 1|1:2:0,0,1 1|1:1.656:0.028,0.287,0.684 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.7:0.024,0.253,0.723 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.034:0.967,0.032,0.001 1|1:1.57:0.044,0.341,0.615 1|1:1.58:0.043,0.334,0.623 1|1:1.474:0.07,0.386,0.544 1|1:2:0,0,1 1|1:1.501:0.062,0.376,0.563 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.751:0.017,0.215,0.768 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.915,0.085,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.489:0.064,0.383,0.553 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.548:0.049,0.355,0.597 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.821:0.003,0.173,0.824 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.644:0.03,0.296,0.674 1|1:2:0,0,1 1|0:1.541:0.051,0.356,0.593 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.955:0.228,0.589,0.183 1|1:2:0,0,1 1|1:1.599:0.043,0.315,0.642 1|1:1.88:0.004,0.112,0.884 0|0:0:1,0,0 1|1:1.444:0.076,0.403,0.521 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.702:0.02,0.258,0.722 0|0:0:1,0,0 1|0:1.024:0.238,0.501,0.262 1|1:1.339:0.088,0.485,0.427 1|1:1.428:0.083,0.407,0.511 1|0:1.382:0.058,0.502,0.44 0|1:1.02:0.24,0.499,0.26 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.498:0.061,0.38,0.559 1|1:2:0,0,1 1|1:1.459:0.073,0.394,0.532 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.011,0.211,0.778 1|1:2:0,0,1 1|1:1.526:0.054,0.366,0.58 0|1:1.5:0.061,0.377,0.562 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.003,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.003,0.084,0.913 1|1:1.454:0.07,0.406,0.524 1|1:2:0,0,1 1|1:1.747:0.039,0.176,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0,0.068,0.932 1|1:1.993:0,0.007,0.993 1|1:1.723:0.03,0.216,0.754 1|1:2:0,0,1 1|1:1.613:0.041,0.306,0.654 1|1:2:0,0,1 1|1:1.592:0.047,0.314,0.639 1|1:2:0,0,1 1|1:1.927:0.001,0.07,0.928 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.003,0.08,0.917 0|0:0:1,0,0 1|0:1.262:0.045,0.649,0.306 1|1:1.445:0.078,0.399,0.523 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.527:0.057,0.359,0.584 0|0:0:1,0,0 1|1:2:0,0,1 +3 17404250 SNP-3.17403059. A G . PASS AR2=0.991;DR2=0.993;AF=0.316 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.741:0.017,0.224,0.758 1|1:1.8:0.011,0.178,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.001,0.085,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.764:0.012,0.212,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.895:0.002,0.101,0.897 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.697:0.023,0.257,0.72 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.794:0.015,0.177,0.809 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.742:0.017,0.224,0.759 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 +3 17404496 SNP-3.17403305. A G . PASS AR2=0.991;DR2=0.994;AF=0.359 GT:DS:GP 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.127:0.876,0.122,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.934:0.002,0.063,0.935 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.599:0.018,0.365,0.617 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.006,0.123,0.872 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.686:0.441,0.433,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 +3 17404634 SNP-3.17403443. A G . PASS AR2=0.997;DR2=0.998;AF=0.275 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.424:0,0.576,0.424 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.052,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17404769 SNP-3.17403578. A G . PASS AR2=0.994;DR2=0.995;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0.274:0.746,0.234,0.02 0|0:0.264:0.754,0.228,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.766,0.219,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.742,0.237,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17405633 SNP-3.17404442. C A . PASS AR2=0.989;DR2=0.992;AF=0.328 GT:DS:GP 0|0:0:1,0,0 0|1:0.308:0.721,0.25,0.029 0|1:0.391:0.64,0.33,0.03 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.49:0.031,0.448,0.521 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.715:0.022,0.241,0.737 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.599:0.401,0.599,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.284:0.742,0.232,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17407227 SNP-3.17406036. C A . PASS AR2=0.962;DR2=0.969;AF=0.373 GT:DS:GP 0|0:0:1,0,0 0|1:0.803:0.36,0.476,0.163 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.375:0.662,0.302,0.036 0|0:0.879:0.313,0.495,0.192 0|1:1:0,1,0 0|0:0.236:0.778,0.209,0.013 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.195:0.812,0.18,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.797,0.19,0.013 0|0:0.206:0.799,0.196,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.801,0.189,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.725,0.253,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.005,0.173,0.822 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.885:0.003,0.109,0.888 1|0:1.117:0.128,0.627,0.245 1|0:1.184:0.055,0.706,0.239 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.146:0.168,0.517,0.314 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.264:0.753,0.231,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.186:0.828,0.157,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.806,0.188,0.005 0|0:0.143:0.862,0.134,0.004 0|0:0:1,0,0 0|0:0.361:0.672,0.296,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.517:0.521,0.441,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.373:0.663,0.301,0.036 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.802:0.361,0.476,0.163 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.257:0.764,0.215,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17407646 SNP-3.17406455. C A . PASS AR2=0.999;DR2=0.999;AF=0.358 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.251:0.749,0.251,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17407766 SNP-3.17406575. C A . PASS AR2=0.994;DR2=0.996;AF=0.359 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.804:0.345,0.507,0.149 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.616:0.501,0.382,0.117 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17407784 SNP-3.17406593. C A . PASS AR2=0.985;DR2=0.987;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0.194:0.814,0.179,0.008 0|0:0.171:0.84,0.149,0.011 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.736,0.234,0.03 0|1:1.414:0.028,0.53,0.442 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.905:0.3,0.494,0.205 1|1:1.844:0.006,0.145,0.85 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.358:0.093,0.456,0.451 1|1:1.926:0.001,0.072,0.927 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.852:0.004,0.14,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.133:0.875,0.118,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.19:0.818,0.173,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17408862 SNP-3.17407671. A G . PASS AR2=0.996;DR2=0.997;AF=0.291 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.256:0.76,0.224,0.016 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.778,0.208,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.729,0.249,0.022 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17408911 SNP-3.17407720. A G . PASS AR2=1;DR2=1;AF=0.263 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17410405 SNP-3.17409214. A G . PASS AR2=0.991;DR2=0.992;AF=0.359 GT:DS:GP 1|0:1:0,1,0 1|1:1.029:0.241,0.489,0.27 0|1:1.033:0.239,0.489,0.272 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.103:0.2,0.497,0.303 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0.001,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0.001,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.406:0.01,0.573,0.417 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 +3 17411943 SNP-3.17410752. A G . PASS AR2=0.985;DR2=0.989;AF=0.325 GT:DS:GP 1|0:1:0,1,0 0|0:0.44:0.61,0.339,0.05 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.003,0.093,0.904 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.01,0.15,0.839 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.008,0.159,0.833 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.011,0.182,0.806 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.742:0.016,0.227,0.758 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.07,0.929 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.003,0.094,0.902 0|0:0:1,0,0 1|1:1.722:0.019,0.239,0.741 0|0:0:1,0,0 1|1:1.784:0.011,0.195,0.795 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.017,0.223,0.76 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.44:0.61,0.339,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17412479 SNP-3.17411288. C A . PASS AR2=0.958;DR2=0.966;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:0.967:0.128,0.778,0.094 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.88,0.117,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.899,0.101,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.969,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.648:0.026,0.299,0.674 0|1:0.868:0.219,0.693,0.088 0|0:0:1,0,0 1|0:1.43:0.084,0.402,0.514 1|0:0.635:0.403,0.558,0.039 1|0:0.98:0.074,0.871,0.055 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.003,0.139,0.858 1|0:1.225:0.033,0.709,0.258 1|1:1.844:0.001,0.154,0.845 1|1:1.907:0.001,0.091,0.908 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.478:0.075,0.372,0.553 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 0|0:0.032:0.968,0.032,0 1|0:0.933:0.195,0.676,0.128 0|0:0:1,0,0 1|1:1.894:0,0.105,0.894 0|0:0:1,0,0 1|0:1.115:0.078,0.728,0.194 1|0:0.82:0.238,0.704,0.058 1|1:1.911:0.002,0.085,0.913 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 1|1:1.875:0.003,0.118,0.878 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.01,0.222,0.768 1|1:1.933:0.005,0.058,0.937 1|1:1.697:0.022,0.26,0.719 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.879:0.002,0.118,0.88 1|1:1.915:0.002,0.082,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.438:0.08,0.402,0.518 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.715:0.007,0.27,0.722 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.11:0.895,0.1,0.005 1|1:1.226:0.135,0.504,0.361 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.005,0.065,0.93 1|1:1.603:0.052,0.294,0.655 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17415865 SNP-3.17414646. C A . PASS AR2=0.931;DR2=0.946;AF=0.281 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:0.966:0.251,0.532,0.217 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.148:0.857,0.137,0.005 1|1:2:0,0,1 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.841,0.154,0.005 0|0:0:1,0,0 1|1:1.939:0,0.061,0.939 1|1:2:0,0,1 1|1:1.795:0.011,0.182,0.807 0|0:0.595:0.515,0.375,0.11 1|1:1.714:0.015,0.257,0.729 0|0:0:1,0,0 1|1:1.718:0.008,0.267,0.725 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.288:0.116,0.48,0.404 0|1:1.185:0.168,0.479,0.353 0|0:0:1,0,0 1|0:0.868:0.335,0.463,0.202 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.071,0.278,0.651 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.005,0.192,0.803 1|1:1.859:0.001,0.14,0.86 0|0:0.316:0.709,0.267,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.001,0.075,0.924 0|0:0:1,0,0 0|0:0.912:0.302,0.483,0.215 0|0:0:1,0,0 1|1:1.669:0.023,0.286,0.692 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.716:0.02,0.244,0.736 0|0:0:1,0,0 1|1:1.739:0.026,0.208,0.765 0|0:0:1,0,0 1|1:1.651:0.031,0.287,0.682 0|0:0:1,0,0 1|1:1.608:0.011,0.37,0.619 1|1:2:0,0,1 1|0:1.529:0.045,0.381,0.574 1|1:1.895:0.011,0.084,0.906 1|0:1.3:0.143,0.413,0.443 0|0:0.495:0.593,0.319,0.088 1|1:1.659:0.057,0.228,0.716 1|1:1.586:0.04,0.334,0.626 1|1:1.782:0.011,0.196,0.793 1|1:2:0,0,1 1|0:1.45:0.036,0.478,0.486 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0.003,0.058,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.896:0.005,0.093,0.901 0|0:0:1,0,0 0|0:0.113:0.892,0.102,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.843,0.152,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.475:0.043,0.44,0.518 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.212:0.798,0.192,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.597:0.063,0.278,0.66 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.902:0.004,0.09,0.906 1|1:1.88:0.006,0.108,0.886 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.003,0.045,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17419157 SNP-3.17417938. A G . PASS AR2=0.933;DR2=0.944;AF=0.305 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.738:0.017,0.228,0.755 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0.148:0.854,0.143,0.003 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.13,0.004 0|0:0:1,0,0 0|0:0.113:0.89,0.106,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.869,0.128,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.825:0.008,0.159,0.833 1|1:2:0,0,1 1|1:1.795:0.014,0.177,0.809 1|1:1.841:0.008,0.143,0.849 1|1:2:0,0,1 1|1:1.721:0.022,0.234,0.744 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.79:0.012,0.187,0.801 1|1:1.758:0.013,0.215,0.772 1|1:2:0,0,1 1|1:1.768:0.013,0.206,0.781 1|1:2:0,0,1 1|1:1.522:0.038,0.401,0.56 1|1:1.614:0.043,0.3,0.657 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.012,0.238,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.945:0.197,0.661,0.142 1|1:2:0,0,1 1|0:1.121:0.167,0.545,0.288 1|1:2:0,0,1 1|1:1.757:0.02,0.204,0.777 1|1:2:0,0,1 0|1:1.146:0.134,0.587,0.28 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.56:0.056,0.328,0.616 1|1:1.814:0.009,0.169,0.823 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.008,0.175,0.816 1|1:1.699:0.027,0.248,0.725 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.684:0.021,0.273,0.706 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.167:0.185,0.462,0.352 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.717:0.009,0.265,0.726 1|1:1.844:0.007,0.141,0.852 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.649:0.448,0.455,0.097 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.858,0.138,0.004 0|0:0:1,0,0 1|1:1.8:0.01,0.181,0.81 1|1:1.753:0.014,0.218,0.768 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.729:0.017,0.236,0.747 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.739:0.021,0.218,0.76 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.736:0.015,0.234,0.751 1|1:2:0,0,1 1|1:1.729:0.02,0.232,0.749 0|0:0:1,0,0 0|0:0.15:0.855,0.14,0.005 1|1:1.719:0.023,0.235,0.742 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.011,0.195,0.794 1|1:2:0,0,1 1|1:1.685:0.022,0.271,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 1|1:1.297:0.082,0.538,0.379 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.575:0.132,0.162,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.791:0.011,0.186,0.802 0|1:0.729:0.361,0.549,0.09 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.009,0.169,0.822 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.54:0.535,0.389,0.076 +3 17421689 SNP-3.17420470. C A . PASS AR2=1;DR2=1;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17421863 SNP-3.17420644. C A . PASS AR2=0.978;DR2=0.983;AF=0.296 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.575:0.047,0.33,0.622 1|1:1.797:0.008,0.188,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.844:0.17,0.816,0.014 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.235:0.016,0.734,0.251 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.065:0.06,0.815,0.125 1|1:1.645:0.031,0.294,0.675 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.807:0.209,0.775,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.003,0.11,0.888 1|1:2:0,0,1 1|1:1.825:0.013,0.149,0.838 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.068:0.934,0.065,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.969 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.002,0.166,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.567:0.049,0.336,0.616 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.009,0.071,0.92 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.547:0.044,0.366,0.591 0|0:0:1,0,0 +3 17425033 SNP-3.17423814. C A . PASS AR2=0.994;DR2=0.995;AF=0.368 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.139:0.866,0.129,0.005 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.138:0.866,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.873,0.122,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.147,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.912,0.088,0 1|0:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.107:0.896,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17425659 SNP-3.17424440. C A . PASS AR2=1;DR2=1;AF=0.34 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17426889 SNP-3.17425670. C A . PASS AR2=1;DR2=1;AF=0.317 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17428070 SNP-3.17426851. C A . PASS AR2=0.998;DR2=0.998;AF=0.349 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.017:0.983,0.017,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.078:0.923,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.009:0,0.991,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17428506 SNP-3.17427287. A G . PASS AR2=0.925;DR2=0.948;AF=0.438 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.813,0.176,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.539:0.533,0.395,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.484:0.574,0.368,0.058 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.97:0.001,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.498:0.564,0.374,0.062 0|1:1:0,1,0 0|0:0.178:0.827,0.168,0.005 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.432:0.614,0.34,0.046 0|0:0:1,0,0 0|0:0.449:0.602,0.348,0.05 0|0:0.201:0.807,0.184,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.481:0.577,0.365,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.585:0.488,0.44,0.072 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.06,0.002 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|1:0.716:0.43,0.424,0.146 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.467:0.545,0.442,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.295:0.723,0.258,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.547:0.527,0.399,0.074 0|0:0.158:0.85,0.143,0.007 0|0:0:1,0,0 0|0:0.523:0.544,0.388,0.068 0|1:1:0,1,0 0|0:0.481:0.577,0.365,0.058 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.416:0.628,0.328,0.044 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.428:0.618,0.336,0.046 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.482:0.577,0.365,0.058 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.447:0.602,0.349,0.049 0|0:0.481:0.577,0.365,0.058 0|1:0.481:0.577,0.365,0.058 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.414:0.629,0.329,0.042 1|1:2:0,0,1 0|0:0.455:0.596,0.353,0.051 0|0:0:1,0,0 1|0:0.46:0.593,0.354,0.053 0|0:0.454:0.597,0.351,0.052 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.092:0.912,0.084,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.056,0.002 0|0:0.436:0.611,0.343,0.046 0|0:0.481:0.577,0.365,0.058 0|0:0.09:0.913,0.084,0.003 0|0:0.503:0.561,0.376,0.064 0|0:0:1,0,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.942,0.056,0.002 0|0:0:1,0,0 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 1|1:1.95:0.003,0.044,0.953 1|1:1.656:0.111,0.122,0.767 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 0|0:0.421:0.623,0.333,0.044 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17430551 SNP-3.17429332. A G . PASS AR2=0.989;DR2=0.991;AF=0.235 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.009,0.163,0.827 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.012,0.186,0.802 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.811:0.008,0.172,0.819 0|0:0:1,0,0 1|1:1.754:0.015,0.215,0.769 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.772:0.013,0.202,0.785 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.74:0.017,0.226,0.757 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.881,0.093,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.006,0.148,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17431115 SNP-3.17429896. C A . PASS AR2=1;DR2=1;AF=0.34 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17432522 SNP-3.17431303. A G . PASS AR2=0.939;DR2=0.954;AF=0.292 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.008,0.157,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.12:0.2,0.479,0.321 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.417:0.09,0.404,0.507 1|1:2:0,0,1 1|1:1.746:0.018,0.218,0.764 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.001,0.072,0.927 1|1:1.414:0.086,0.415,0.5 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.656:0.029,0.286,0.685 1|0:1.437:0.082,0.399,0.519 1|1:1.522:0.05,0.379,0.572 1|1:1.695:0.028,0.249,0.723 1|1:2:0,0,1 1|1:1.842:0.006,0.147,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.004,0.169,0.827 1|1:1.913:0.001,0.085,0.914 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.521:0.056,0.368,0.577 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.578:0.087,0.248,0.665 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.62:0.033,0.313,0.654 1|1:1.691:0.028,0.254,0.719 1|1:1.596:0.042,0.32,0.638 1|1:2:0,0,1 1|1:1.487:0.057,0.399,0.544 1|1:1.936:0,0.064,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.532:0.052,0.365,0.584 1|1:1.631:0.034,0.301,0.665 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.455:0.072,0.4,0.528 1|1:1.682:0.024,0.27,0.706 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.644:0.026,0.304,0.67 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.534:0.053,0.36,0.587 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.579:0.046,0.33,0.625 1|1:1.601:0.029,0.341,0.63 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.002,0.11,0.888 1|1:1.89:0.004,0.102,0.894 1|1:1.596:0.035,0.334,0.631 1|1:1.679:0.023,0.274,0.702 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.589:0.042,0.326,0.631 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17433999 SNP-3.17432780. C A . PASS AR2=1;DR2=1;AF=0.35 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17435638 SNP-3.17434419. C A . PASS AR2=1;DR2=1;AF=0.376 GT:DS:GP 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17436950 SNP-3.17435731. C A . PASS AR2=0.996;DR2=0.996;AF=0.341 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.707:0.018,0.257,0.725 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.001,0.166,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.913:0,0.086,0.914 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.001,0.284,0.715 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17439104 SNP-3.17437885. A G . PASS AR2=1;DR2=1;AF=0.259 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.006:0,0.994,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17442289 SNP-3.17441070. A G . PASS AR2=0.967;DR2=0.976;AF=0.316 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.856,0.135,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.636:0.036,0.291,0.673 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.695:0.046,0.214,0.74 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.545:0.055,0.344,0.601 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.623:0.032,0.314,0.655 1|1:1.9:0.003,0.095,0.902 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.015,0.187,0.798 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.547:0.048,0.357,0.595 1|1:1.446:0.076,0.403,0.521 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.627:0.035,0.303,0.662 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.037:0.963,0.036,0 0|0:0.05:0.95,0.05,0 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.57:0.043,0.345,0.613 0|0:0:1,0,0 1|1:1.729:0.016,0.239,0.745 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.866,0.129,0.005 1|1:1.535:0.056,0.352,0.591 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.733:0.015,0.238,0.747 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.013,0.223,0.764 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.643:0.043,0.272,0.685 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17443632 SNP-3.17442413. A G . PASS AR2=0.999;DR2=0.999;AF=0.245 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.001,0.066,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0.001,0.07,0.929 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17447735 SNP-3.17446516. C A . PASS AR2=0.985;DR2=0.987;AF=0.301 GT:DS:GP 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.006,0.147,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.047:0.113,0.727,0.16 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.665:0.341,0.654,0.005 1|1:1.819:0.011,0.16,0.83 1|0:1:0,1,0 1|0:1.197:0.039,0.726,0.236 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.995:0,0.005,0.995 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.818:0.009,0.164,0.827 0|0:0:1,0,0 1|1:1.945:0.001,0.054,0.946 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.004,0.12,0.876 1|1:1.946:0.001,0.052,0.947 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 1|1:1.911:0.002,0.085,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.006,0.12,0.874 1|1:2:0,0,1 1|1:1.912:0.001,0.086,0.913 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.005,0.064,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.058,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|1:1.936:0,0.064,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:1.866:0,0.133,0.867 1|1:1.89:0.003,0.105,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17448662 SNP-3.17447443. C A . 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C A . PASS AR2=1;DR2=1;AF=0.348 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17455247 SNP-3.17454028. A G . PASS AR2=0.968;DR2=0.977;AF=0.23 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.568:0.055,0.322,0.623 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.555:0.049,0.347,0.604 1|1:1.551:0.05,0.35,0.601 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.544:0.051,0.355,0.595 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.681:0.021,0.277,0.702 1|0:1:0,1,0 1|1:1.778:0.012,0.199,0.79 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.557:0.049,0.345,0.606 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.594:0.041,0.324,0.635 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.562:0.049,0.341,0.61 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.548:0.052,0.347,0.601 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.93:0.002,0.065,0.933 1|1:1.655:0.033,0.28,0.687 1|1:1.931:0.002,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17456410 SNP-3.17455191. A G . PASS AR2=0.999;DR2=0.999;AF=0.336 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.957:0.001,0.042,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.884:0.004,0.109,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17457271 SNP-3.17456052. C A . PASS AR2=0.992;DR2=0.993;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.202:0.809,0.181,0.011 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|1:1:0,1,0 0|0:0.101:0.902,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.077,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0,0.056,0.944 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.733:0,0.267,0.733 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.001,0.16,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.939,0.06,0.001 0|0:0.024:0.976,0.023,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.843,0.151,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17461457 SNP-3.17460238. A G . PASS AR2=0.853;DR2=0.892;AF=0.25 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.869:0.324,0.483,0.193 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.488:0.566,0.379,0.055 0|0:0:1,0,0 0|0:0.301:0.721,0.257,0.022 0|0:0.468:0.589,0.354,0.057 0|1:1.076:0.185,0.554,0.261 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.294:0.122,0.462,0.416 0|0:0.187:0.822,0.168,0.01 0|0:0.397:0.627,0.35,0.024 0|1:0.509:0.549,0.393,0.058 1|0:1.409:0.043,0.506,0.452 1|1:2:0,0,1 0|1:0.724:0.314,0.648,0.038 0|0:0.402:0.633,0.332,0.035 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.589:0.489,0.433,0.078 0|0:0.806:0.374,0.447,0.18 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.709:0.413,0.465,0.122 0|1:1.079:0.197,0.526,0.277 0|0:0:1,0,0 0|0:0.491:0.565,0.379,0.056 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.879:0.296,0.529,0.175 0|1:1.163:0.121,0.594,0.284 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.526:0.545,0.384,0.071 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.625:0.47,0.436,0.094 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.784:0.355,0.506,0.139 0|0:0:1,0,0 0|1:1.311:0.084,0.521,0.395 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.947:0.322,0.409,0.269 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.909,0.091,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.614:0.481,0.424,0.095 0|0:0:1,0,0 0|0:0.464:0.591,0.353,0.056 0|0:0:1,0,0 1|1:1.857:0.008,0.126,0.865 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.217:0.143,0.497,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.167:0.15,0.534,0.317 0|0:0:1,0,0 0|0:0.497:0.58,0.342,0.077 0|0:0:1,0,0 1|1:1.555:0.048,0.349,0.603 1|1:1.581:0.02,0.378,0.602 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.683:0.494,0.33,0.176 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.501:0.557,0.385,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.6:0.484,0.432,0.084 0|0:0.955:0.236,0.573,0.191 0|0:0.449:0.609,0.332,0.058 0|0:0:1,0,0 0|0:0.129:0.877,0.118,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.477:0.578,0.367,0.055 1|0:0.5:0.556,0.388,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.297:0.107,0.489,0.404 0|0:0:1,0,0 0|0:0.8:0.353,0.494,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.696:0.423,0.458,0.119 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.858:0.009,0.124,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.013,0.139,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.488:0.026,0.459,0.515 1|0:0.503:0.553,0.391,0.056 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.512:0.53,0.429,0.041 0|0:0:1,0,0 0|0:0.491:0.571,0.366,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.708:0.026,0.241,0.734 +3 17461629 SNP-3.17460410. C A . PASS AR2=0.987;DR2=0.989;AF=0.331 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.787:0.008,0.197,0.795 1|1:1.887:0.003,0.108,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.567:0.012,0.41,0.578 1|1:2:0,0,1 1|1:1.914:0.004,0.077,0.919 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.92:0.001,0.078,0.921 1|1:1.795:0.011,0.183,0.806 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|0:0.945:0.055,0.945,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.709:0.024,0.243,0.733 1|1:1.954:0.001,0.045,0.954 1|1:1.78:0.012,0.196,0.792 1|1:1.954:0.001,0.045,0.954 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:1.832:0.003,0.162,0.835 1|1:1.914:0.004,0.078,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.008,0.144,0.849 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.001,0.085,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.853:0.006,0.135,0.859 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.805:0.011,0.172,0.816 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17461871 SNP-3.17460652. C A . PASS AR2=0.971;DR2=0.975;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.223:0.79,0.197,0.013 0|0:0.285:0.737,0.24,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.21:0.803,0.185,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.213:0.798,0.191,0.011 0|0:0.292:0.727,0.255,0.019 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.094:0.909,0.087,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.824,0.166,0.009 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.199:0.811,0.179,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.769,0.215,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.791,0.196,0.013 0|0:0:1,0,0 0|0:0.273:0.746,0.235,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.971,0.028,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.297:0.724,0.254,0.021 0|0:0.3:0.722,0.257,0.022 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.871,0.126,0.003 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.826,0.163,0.011 1|0:1:0,1,0 0|0:0.209:0.804,0.184,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.195:0.817,0.172,0.011 0|0:0.267:0.751,0.231,0.018 0|0:0:1,0,0 0|0:0.213:0.799,0.188,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.237:0.777,0.209,0.014 0|0:0.256:0.761,0.222,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.787,0.2,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.057:0.944,0.054,0.001 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.001 0|0:0.073:0.928,0.07,0.002 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.234:0.779,0.207,0.014 1|1:2:0,0,1 0|0:0.222:0.791,0.196,0.013 0|0:0:1,0,0 0|0:0.199:0.812,0.176,0.011 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17462093 SNP-3.17460874. A G . PASS AR2=0.994;DR2=0.996;AF=0.347 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.599:0.156,0.088,0.755 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 1|1:1.966:0.001,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.537:0.009,0.445,0.546 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17462213 SNP-3.17460994. C A . PASS AR2=0.997;DR2=0.998;AF=0.335 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.507:0.002,0.489,0.509 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.004,0.174,0.821 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17462855 SNP-3.17461636. C A . PASS AR2=0.999;DR2=0.999;AF=0.336 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.93:0.002,0.067,0.931 1|0:1:0,1,0 1|1:1.997:0,0.002,0.998 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.933:0.002,0.063,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17464258 SNP-3.17463039. A G . PASS AR2=0.993;DR2=0.994;AF=0.364 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.595:0.153,0.099,0.748 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.004,0.092,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.815,0.175,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.195:0.815,0.175,0.01 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.871,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17465300 SNP-3.17464081. C A . PASS AR2=0.988;DR2=0.99;AF=0.288 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.003,0.107,0.89 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.27:0.085,0.559,0.356 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.176:0.052,0.719,0.229 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.925:0.077,0.922,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.875:0.004,0.117,0.879 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.005:0.12,0.755,0.125 1|1:1.888:0.004,0.105,0.891 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.005,0.137,0.857 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.894:0.003,0.1,0.897 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0.001,0.067,0.932 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.006,0.302,0.692 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.749:0.005,0.24,0.754 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17466511 SNP-3.17465292. C A . 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C A . PASS AR2=0.99;DR2=0.992;AF=0.357 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.388:0.012,0.589,0.4 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.933:0.002,0.062,0.935 1|1:1.71:0.009,0.271,0.72 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0.001,0.038,0.961 0|0:0:1,0,0 1|1:1.969:0,0.03,0.969 1|1:1.966:0,0.033,0.966 1|1:1.938:0,0.062,0.938 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.959 1|1:1.971:0,0.028,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.774:0.004,0.217,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.209:0,0.791,0.209 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.002,0.059,0.94 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.139:0.862,0.137,0.001 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.002:0.998,0.002,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 +3 17467370 SNP-3.17466151. C A . PASS AR2=0.993;DR2=0.995;AF=0.366 GT:DS:GP 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.002 0|0:0.043:0.957,0.043,0 0|0:0.026:0.974,0.026,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.404:0.005,0.586,0.409 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.745:0,0.255,0.745 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.936,0.061,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.956,0.043,0.002 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.932,0.065,0.003 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.14:0.861,0.138,0.001 0|0:0.039:0.962,0.037,0.001 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 +3 17467718 SNP-3.17466499. C A . PASS AR2=0.999;DR2=0.999;AF=0.35 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.142:0.007,0.843,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17467753 SNP-3.17466534. A G . PASS AR2=0.939;DR2=0.949;AF=0.253 GT:DS:GP 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.115:0.889,0.107,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.323:0.111,0.456,0.434 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.157:0.849,0.144,0.006 0|0:0:1,0,0 1|1:1.563:0.049,0.338,0.612 0|0:0.242:0.774,0.21,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.73:0.036,0.198,0.766 1|0:1.311:0.118,0.452,0.43 1|1:1.87:0.005,0.12,0.875 0|0:0.363:0.637,0.363,0 1|1:1.823:0.009,0.16,0.831 1|1:2:0,0,1 1|1:1.231:0.15,0.468,0.381 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.171:0.839,0.151,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.148:0.858,0.136,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.895,0.102,0.004 0|0:0.157:0.849,0.145,0.006 0|0:0:1,0,0 0|0:0.139:0.866,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.146,0.007 0|0:0:1,0,0 1|1:1.825:0.008,0.159,0.833 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.356:0.062,0.52,0.418 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.164:0.849,0.138,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.839,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.697:0.031,0.24,0.729 1|1:2:0,0,1 0|0:0.133:0.873,0.121,0.006 0|1:1.319:0.118,0.446,0.436 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.009,0.171,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.005,0.133,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.253:0.151,0.445,0.404 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.663:0.029,0.278,0.692 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.248:0.144,0.465,0.392 0|0:0:1,0,0 1|1:1.79:0.011,0.188,0.801 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.805:0.009,0.177,0.814 0|0:0.135:0.869,0.126,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.746:0.016,0.221,0.763 1|1:1.825:0.008,0.16,0.832 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.872:0.005,0.118,0.877 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.005,0.121,0.874 1|1:1.772:0.012,0.204,0.784 1|1:1.615:0.048,0.289,0.663 0|0:0:1,0,0 0|0:0.128:0.875,0.121,0.003 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17468835 SNP-3.17467616. A G . PASS AR2=0.983;DR2=0.986;AF=0.258 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.659:0.387,0.566,0.047 1|1:1.893:0.007,0.094,0.899 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 1|1:1.975:0,0.024,0.976 1|1:1.622:0.037,0.304,0.659 1|1:2:0,0,1 1|1:1.9:0.003,0.094,0.903 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:1.903:0.001,0.094,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.883,0.113,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.703,0.283,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.616:0.023,0.338,0.639 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.861:0.005,0.13,0.866 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.917:0.002,0.08,0.918 1|1:2:0,0,1 1|1:1.678:0.024,0.274,0.702 1|1:1.919:0.001,0.078,0.921 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17474014 SNP-3.17472795. C A . PASS AR2=0.997;DR2=0.997;AF=0.349 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.628:0.04,0.291,0.668 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.805:0.01,0.175,0.815 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.001,0.068,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17476491 SNP-3.17475272. C A . 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A G . 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A G . PASS AR2=0.93;DR2=0.944;AF=0.295 GT:DS:GP 1|1:1.647:0.031,0.292,0.678 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.696:0.025,0.255,0.72 1|1:1.65:0.033,0.285,0.682 1|1:1.681:0.025,0.27,0.706 1|1:1.535:0.054,0.357,0.589 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.569:0.044,0.344,0.612 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.021,0.239,0.741 1|1:1.728:0.019,0.234,0.747 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.012,0.167,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.023,0.256,0.72 1|1:1.193:0.113,0.581,0.306 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.431:0.075,0.418,0.507 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.831:0.341,0.486,0.173 1|1:2:0,0,1 1|1:1.511:0.061,0.366,0.573 1|1:1.712:0.022,0.244,0.734 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.649:0.027,0.298,0.676 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.492:0.631,0.245,0.124 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.727:0.019,0.234,0.747 0|0:0:1,0,0 1|1:1.731:0.019,0.232,0.749 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.801,0.189,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.596:0.059,0.287,0.655 1|1:1.68:0.024,0.272,0.704 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.886,0.11,0.004 0|0:0.226:0.786,0.201,0.013 1|1:1.741:0.017,0.224,0.758 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.698:0.021,0.26,0.719 0|1:1:0,1,0 0|0:0.164:0.846,0.145,0.009 0|0:0:1,0,0 1|1:1.606:0.041,0.312,0.647 0|0:0.099:0.903,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.833:0.01,0.147,0.843 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.017,0.226,0.757 1|1:1.689:0.023,0.266,0.711 1|1:2:0,0,1 1|1:1.711:0.021,0.246,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.019,0.229,0.751 1|1:1.718:0.02,0.241,0.739 1|1:1.707:0.023,0.247,0.73 1|1:2:0,0,1 1|1:1.736:0.018,0.228,0.754 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.541:0.051,0.356,0.593 1|1:1.69:0.024,0.262,0.714 0|0:0:1,0,0 1|1:2:0,0,1 +3 17489382 SNP-3.17488163. C A . PASS AR2=0.959;DR2=0.969;AF=0.318 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0 0|0:0.246:0.758,0.239,0.003 0|0:0:1,0,0 0|0:0.31:0.707,0.276,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0.419:0.62,0.34,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.116,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.822,0.171,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.002,0.12,0.878 1|1:1.621:0.025,0.329,0.646 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.778:0.361,0.499,0.139 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.588:0.041,0.331,0.629 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.548:0.034,0.384,0.582 0|1:1.437:0.077,0.41,0.513 1|1:1.527:0.013,0.448,0.539 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.242:0.17,0.418,0.412 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.467:0.076,0.381,0.543 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.893:0.002,0.102,0.896 1|1:1.99:0,0.01,0.99 1|1:1.622:0.028,0.321,0.65 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.94,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.792,0.206,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 1|1:2:0,0,1 0|0:0.132:0.869,0.13,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0.301:0.708,0.284,0.008 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.023,0.234,0.743 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.002,0.037,0.962 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17489992 SNP-3.17488773. A G . PASS AR2=0.992;DR2=0.994;AF=0.228 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.897,0.099,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.6:0.431,0.537,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.7,0.293,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.861,0.134,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.22:0.033,0.714,0.253 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17493182 SNP-3.17491963. A G . PASS AR2=0.961;DR2=0.97;AF=0.315 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.005,0.122,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.007,0.142,0.851 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.696:0.019,0.266,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.006,0.144,0.85 1|1:2:0,0,1 0|1:1.437:0.071,0.421,0.508 1|1:1.678:0.025,0.273,0.702 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.743:0.013,0.23,0.757 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.588:0.088,0.236,0.676 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.019,0.233,0.748 1|1:2:0,0,1 0|1:1.087:0.188,0.537,0.275 1|0:1:0,1,0 0|0:0.183:0.827,0.163,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.676:0.033,0.258,0.709 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.591:0.032,0.344,0.624 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.587:0.057,0.299,0.644 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.513:0.063,0.361,0.576 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.606:0.049,0.296,0.655 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.83:0.238,0.694,0.068 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.447:0.073,0.408,0.519 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.005,0.13,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.869:0.005,0.121,0.874 1|1:1.838:0.007,0.148,0.845 1|1:1.861:0.005,0.129,0.866 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.005,0.138,0.857 1|1:2:0,0,1 1|1:1.867:0.005,0.123,0.872 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 +3 17493629 SNP-3.17492410. C A . PASS AR2=0.995;DR2=0.996;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0.251:0.76,0.229,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.035:0.007,0.951,0.042 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.747,0.235,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.083:0.918,0.082,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17493657 SNP-3.17492438. C A . PASS AR2=0.994;DR2=0.995;AF=0.373 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.53:0.002,0.466,0.532 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.968,0.031,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.955:0.001,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.14,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0,0.072,0.927 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.112:0.891,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.001,0.074,0.925 0|0:0:1,0,0 +3 17506280 SNP-3.17505061. A G . PASS AR2=0.997;DR2=0.998;AF=0.388 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.563:0.517,0.402,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.006,0.042,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17506439 SNP-3.17505220. C A . PASS AR2=0.999;DR2=0.999;AF=0.387 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.702:0.305,0.689,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17506741 SNP-3.17505522. A G . PASS AR2=0.939;DR2=0.958;AF=0.507 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.5:0.062,0.376,0.562 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.569:0.037,0.356,0.606 0|1:1:0,1,0 1|1:1.544:0.052,0.351,0.597 1|1:2:0,0,1 1|1:1.554:0.05,0.347,0.604 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.356:0.098,0.448,0.454 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.259:0.142,0.457,0.401 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.64:0.027,0.306,0.667 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.593:0.041,0.325,0.634 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.011,0.13,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.76:0.011,0.218,0.771 0|0:0:1,0,0 0|1:1.525:0.038,0.399,0.563 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.772:0.012,0.203,0.785 1|0:1:0,1,0 1|1:1.491:0.099,0.31,0.591 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.564:0.048,0.339,0.612 0|0:0:1,0,0 1|1:1.522:0.057,0.365,0.579 1|1:1.524:0.056,0.364,0.58 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.56:0.039,0.362,0.599 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.608:0.036,0.319,0.645 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.52:0.045,0.389,0.565 1|1:1.784:0.005,0.206,0.789 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.351:0.073,0.503,0.424 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.598:0.043,0.316,0.641 0|0:0:1,0,0 1|0:1.563:0.048,0.34,0.611 0|0:0:1,0,0 1|1:1.494:0.066,0.374,0.56 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.538:0.053,0.356,0.591 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:1.564:0.045,0.346,0.609 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.566:0.048,0.338,0.614 0|0:0:1,0,0 1|1:1.822:0.015,0.147,0.838 1|1:2:0,0,1 1|1:1.751:0.02,0.209,0.771 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17507104 SNP-3.17505885. A G . PASS AR2=0.975;DR2=0.981;AF=0.324 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.723:0.02,0.237,0.743 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.691:0.024,0.261,0.715 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.668:0.029,0.275,0.696 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.03,0.329,0.64 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.681:0.026,0.267,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.681:0.026,0.267,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.657:0.029,0.285,0.686 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.658:0.029,0.284,0.687 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.67:0.028,0.275,0.698 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.657:0.029,0.284,0.686 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.695:0.025,0.256,0.72 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.023,0.258,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.679:0.026,0.268,0.706 1|1:2:0,0,1 1|1:1.656:0.029,0.285,0.686 0|0:0:1,0,0 1|0:1:0,1,0 +3 17508035 SNP-3.17506816. C A . PASS AR2=0.991;DR2=0.993;AF=0.367 GT:DS:GP 0|0:0:1,0,0 0|0:0.717:0.415,0.454,0.132 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.364:0.636,0.364,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.717:0.415,0.454,0.132 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.717:0.415,0.454,0.132 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17508310 SNP-3.17507091. A G . PASS AR2=0.997;DR2=0.997;AF=0.23 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.963,0.035,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.271:0.024,0.682,0.294 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17508325 SNP-3.17507106. C A . PASS AR2=0.976;DR2=0.982;AF=0.428 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.541:0.055,0.348,0.596 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.275:0.742,0.241,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.276:0.735,0.255,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.257:0.756,0.23,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.211:0.792,0.206,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.377:0.66,0.303,0.037 0|0:0:1,0,0 0|0:0.496:0.56,0.383,0.057 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.007,0.992 1|1:2:0,0,1 0|0:0.345:0.688,0.279,0.033 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.472:0.587,0.355,0.059 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.629:0.398,0.574,0.028 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.003 0|1:1:0,1,0 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.057:0.944,0.054,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.095,0.003 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.1:0.903,0.095,0.003 1|1:2:0,0,1 0|0:0.06:0.941,0.057,0.002 0|0:0.174:0.832,0.161,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17509187 SNP-3.17507968. C A . PASS AR2=0.977;DR2=0.98;AF=0.397 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.839:0.352,0.456,0.192 1|1:1.933:0.002,0.063,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.369:0.658,0.315,0.027 0|0:0.043:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.749,0.243,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.896,0.099,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.728,0.255,0.017 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.818,0.175,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.082:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.849,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.18:0.83,0.161,0.01 0|0:0.077:0.924,0.076,0 0|0:0.162:0.839,0.159,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.22:0.792,0.196,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.097,0.9 1|0:1:0,1,0 0|0:0.149:0.858,0.135,0.007 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.087,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.165:0.842,0.151,0.007 0|0:0.316:0.709,0.267,0.025 0|0:0.022:0.978,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.82,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.766,0.217,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.887,0.107,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.838:0.353,0.455,0.191 1|1:2:0,0,1 0|0:0.085:0.918,0.079,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17509214 SNP-3.17507995. A G . PASS AR2=0.98;DR2=0.985;AF=0.363 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.687:0.031,0.251,0.718 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.813:0.007,0.174,0.82 1|1:2:0,0,1 1|1:1.766:0.017,0.2,0.783 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.87:0.001,0.128,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.663:0.028,0.281,0.691 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.907:0,0.092,0.908 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.068:0.933,0.066,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.525:0.05,0.375,0.575 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.083:0.919,0.08,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.786:0.014,0.185,0.8 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.817:0.004,0.175,0.821 1|1:2:0,0,1 1|1:1.63:0.022,0.325,0.653 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.435:0.061,0.443,0.496 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.006,0.204,0.79 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.006,0.18,0.813 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.001,0.072,0.927 1|1:1.763:0.016,0.206,0.779 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17509298 SNP-3.17508079. A G . PASS AR2=0.999;DR2=0.999;AF=0.385 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.106:0.898,0.099,0.004 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17509481 SNP-3.17508262. A G . PASS AR2=0.998;DR2=0.998;AF=0.391 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:1.903:0.001,0.094,0.905 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17511061 SNP-3.17509842. C A . PASS AR2=0.979;DR2=0.982;AF=0.333 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0,0.054,0.946 1|1:1.942:0.001,0.055,0.944 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.002,0.069,0.929 1|1:1.952:0.001,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.271:0.178,0.374,0.448 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.823:0.008,0.161,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0,0.069,0.931 1|1:1.931:0.001,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.002,0.094,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.88:0.003,0.113,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.872:0.004,0.12,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.841:0.007,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.003,0.092,0.905 1|1:2:0,0,1 1|1:1.801:0.007,0.185,0.808 1|1:1.856:0.006,0.132,0.862 1|1:1.727:0.017,0.24,0.743 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.008,0.141,0.851 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.002,0.071,0.927 0|1:1:0,1,0 1|1:1.858:0.008,0.126,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.766:0.007,0.219,0.773 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 1|1:1.845:0.007,0.142,0.852 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.005,0.1,0.894 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.952:0.001,0.046,0.953 1|1:1.909:0.003,0.086,0.911 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.004,0.111,0.885 1|1:1.966:0.001,0.032,0.967 1|1:1.829:0.009,0.153,0.838 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.008,0.141,0.851 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17511335 SNP-3.17510116. C A . PASS AR2=0.992;DR2=0.994;AF=0.329 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:1.958:0,0.041,0.959 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.56:0.05,0.339,0.611 1|0:1:0,1,0 1|0:1.333:0.039,0.59,0.372 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.011:0.989,0.011,0 1|1:1.782:0.012,0.194,0.794 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.008,0.225,0.767 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.002,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17511446 SNP-3.17510227. C A . PASS AR2=0.99;DR2=0.991;AF=0.332 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.002,0.112,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.64:0.003,0.353,0.644 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.001,0.062,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.01,0.12,0.87 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.002,0.082,0.916 1|1:1.944:0.001,0.054,0.945 1|1:1.86:0.005,0.129,0.865 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 1|1:1.936:0.002,0.061,0.937 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.002,0.117,0.881 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.873:0.002,0.123,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0.001,0.029,0.97 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.07,0.097,0.834 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.878:0.002,0.119,0.88 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17511694 SNP-3.17510475. C A . PASS AR2=0.974;DR2=0.979;AF=0.326 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.837,0.153,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.838,0.149,0.012 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.393:0.659,0.289,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 1|0:1:0,1,0 0|0:0.309:0.702,0.287,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.092:0.909,0.089,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.335:0.035,0.596,0.369 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.816:0.198,0.787,0.014 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.123:0.878,0.121,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.133:0.87,0.128,0.003 0|1:1.231:0.15,0.469,0.381 0|0:0.071:0.931,0.068,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.941:0,0.059,0.941 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.967,0.033,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.692:0.012,0.284,0.704 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.702:0.028,0.241,0.731 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.13:0.876,0.118,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.698,0.294,0.008 0|1:1:0,1,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.077,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.593:0.054,0.299,0.647 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.865,0.126,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17512310 SNP-3.17511091. C A . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17512568 SNP-3.17511349. A G . PASS AR2=1;DR2=1;AF=0.228 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17519704 SNP-3.17518485. A G . PASS AR2=0.987;DR2=0.99;AF=0.402 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.29:0.731,0.247,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.745,0.237,0.018 0|0:0:1,0,0 0|0:0.289:0.732,0.247,0.021 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.742,0.239,0.019 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.702,0.295,0.003 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.1:0.908,0.085,0.008 0|0:0:1,0,0 0|0:0.103:0.904,0.089,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.741,0.24,0.019 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.284:0.736,0.244,0.02 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.755,0.228,0.017 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17520597 SNP-3.17519378. A G . PASS AR2=0.985;DR2=0.987;AF=0.232 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.822:0.008,0.162,0.83 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.8:0.01,0.18,0.81 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 0|1:1:0,1,0 0|0:0.091:0.914,0.08,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.145,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.795:0.011,0.183,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.01,0.178,0.812 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.882,0.111,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:1.804:0.01,0.177,0.813 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17520692 SNP-3.17519473. C A . PASS AR2=0.915;DR2=0.947;AF=0.431 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.678,0.292,0.03 1|1:2:0,0,1 0|0:0.575:0.509,0.408,0.084 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.865,0.13,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.575:0.509,0.408,0.084 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.572:0.511,0.406,0.083 0|0:0.365:0.672,0.291,0.037 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.647:0.459,0.435,0.106 0|0:0.628:0.471,0.431,0.099 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.575:0.509,0.408,0.084 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.575:0.509,0.408,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.852,0.143,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.096:0.906,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.002 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.523:0.541,0.395,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.604:0.489,0.418,0.093 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.573:0.51,0.407,0.083 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.608:0.483,0.426,0.091 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.635:0.466,0.432,0.102 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.129,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.57:0.512,0.405,0.083 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.64:0.463,0.433,0.103 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.922,0.076,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.593:0.495,0.417,0.088 0|0:0.57:0.512,0.405,0.083 0|0:0.572:0.511,0.406,0.083 0|0:0.575:0.509,0.408,0.084 0|1:0.622:0.475,0.428,0.097 0|0:0.581:0.504,0.411,0.085 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.609:0.482,0.427,0.091 1|0:0.62:0.475,0.429,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.647:0.459,0.435,0.106 0|0:0.104:0.898,0.101,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17522136 SNP-3.17520917. C A . PASS AR2=1;DR2=1;AF=0.383 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17523387 SNP-3.17522168. C A . PASS AR2=1;DR2=1;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17524099 SNP-3.17522880. A G . PASS AR2=0.999;DR2=0.999;AF=0.369 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0,0.198,0.801 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17524982 SNP-3.17523763. C A . PASS AR2=0.985;DR2=0.988;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.822:0.001,0.176,0.823 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.922 1|1:1.907:0.002,0.09,0.909 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.79:0.013,0.183,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.008,0.158,0.834 1|1:1.661:0.027,0.286,0.688 1|1:2:0,0,1 1|1:1.841:0.006,0.147,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.9:0.003,0.094,0.903 1|1:1.716:0.022,0.241,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0,0.052,0.948 0|0:0:1,0,0 1|1:1.777:0.013,0.198,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.006,0.158,0.835 1|1:2:0,0,1 1|1:1.867:0.004,0.126,0.871 1|1:1.83:0.007,0.157,0.837 0|0:0:1,0,0 1|1:1.699:0.024,0.253,0.723 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.007,0.164,0.829 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.886:0.004,0.106,0.89 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.061,0.937 1|1:1.96:0.001,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17527062 SNP-3.17525843. C A . PASS AR2=0.992;DR2=0.992;AF=0.39 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.893:0,0.107,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.066:0.935,0.064,0.001 0|0:0.07:0.931,0.068,0.001 1|0:1:0,1,0 0|0:0.049:0.952,0.047,0.001 1|1:1.895:0,0.105,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0.014:0.986,0.014,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.033:0,0.967,0.033 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0.066:0.935,0.064,0.001 0|0:0.066:0.935,0.064,0.001 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17527717 SNP-3.17526498. C A . PASS AR2=0.985;DR2=0.99;AF=0.375 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.885:0,0.115,0.885 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.996:0.004,0.996,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.388:0.653,0.305,0.042 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.474:0.583,0.36,0.057 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.388:0.653,0.305,0.042 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.47:0.586,0.358,0.056 0|0:0.182:0.833,0.152,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.388:0.653,0.305,0.042 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.412:0.633,0.321,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17528096 SNP-3.17526877. A G . PASS AR2=0.992;DR2=0.993;AF=0.247 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.945,0.051,0.004 1|1:2:0,0,1 0|1:1.194:0.144,0.519,0.337 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.429:0.013,0.545,0.442 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.073:0.928,0.071,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17529059 SNP-3.17527840. C A . PASS AR2=0.968;DR2=0.973;AF=0.414 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.892:0,0.108,0.892 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.142:0.863,0.132,0.005 0|0:0.203:0.824,0.15,0.027 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.222:0.791,0.196,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.398:0.623,0.357,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0.299:0.711,0.278,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.142:0.863,0.132,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|0:1.019:0,0.98,0.019 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.071:0,0.929,0.071 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.234:0.779,0.209,0.013 1|1:2:0,0,1 0|0:0.08:0.923,0.074,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.145:0.866,0.123,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.189:0.819,0.172,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.177:0.833,0.156,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.329:0.723,0.224,0.053 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0.142:0.863,0.132,0.005 0|0:0.049:0.952,0.047,0.001 1|0:1:0,1,0 0|0:0.296:0.726,0.251,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.81,0.184,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.757,0.225,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.066:0.936,0.061,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.749,0.232,0.018 0|0:0.09:0.912,0.086,0.002 1|1:2:0,0,1 0|0:0:1,0,0 +3 17532885 SNP-3.17531666. C A . PASS AR2=0.966;DR2=0.966;AF=0.491 GT:DS:GP 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|0:1.042:0.23,0.499,0.272 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.042:0.23,0.499,0.272 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.042:0.23,0.499,0.272 1|0:0.974:0.261,0.504,0.235 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.042:0.23,0.499,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.042:0.23,0.499,0.272 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.042:0.23,0.499,0.272 0|1:1:0,1,0 0|1:1.042:0.23,0.499,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.042:0.23,0.499,0.272 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.042:0.23,0.499,0.272 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.042:0.23,0.499,0.272 0|1:1:0,1,0 1|0:1.042:0.23,0.499,0.272 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.042:0.23,0.499,0.272 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.042:0.23,0.499,0.272 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17533563 SNP-3.17532344. C A . PASS AR2=0.996;DR2=0.996;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0.039:0.961,0.038,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.019:0,0.981,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0.039:0.961,0.038,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17534470 SNP-3.17533251. C A . PASS AR2=0.999;DR2=1;AF=0.348 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0,0.054,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17535552 SNP-3.17534333. A G . PASS AR2=1;DR2=1;AF=0.376 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17535974 SNP-3.17534755. C A . PASS AR2=1;DR2=1;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17537337 SNP-3.17536118. A G . PASS AR2=1;DR2=1;AF=0.366 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17537864 SNP-3.17536645. C A . PASS AR2=1;DR2=1;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17539868 SNP-3.17538649. A G . 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C A . PASS AR2=0.999;DR2=0.999;AF=0.35 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17548078 SNP-3.17546859. C A . PASS AR2=0.958;DR2=0.968;AF=0.319 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.572:0.047,0.333,0.62 1|1:1.331:0.154,0.361,0.485 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.641:0.029,0.301,0.67 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.006,0.105,0.888 1|1:2:0,0,1 1|1:1.761:0.001,0.237,0.762 1|1:1.866:0.005,0.124,0.871 0|1:1.599:0.038,0.324,0.637 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.602:0.041,0.315,0.644 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.572:0.048,0.333,0.62 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.863:0.007,0.123,0.87 1|1:1.89:0.006,0.098,0.896 1|1:1.915:0.001,0.083,0.916 0|0:0:1,0,0 1|1:1.662:0.028,0.282,0.69 0|0:0:1,0,0 1|1:1.67:0.018,0.295,0.688 0|0:0:1,0,0 1|1:1.722:0.021,0.236,0.743 1|1:1.521:0.059,0.361,0.58 1|1:2:0,0,1 1|1:1.673:0.025,0.277,0.698 0|0:0:1,0,0 1|1:1.602:0.039,0.32,0.641 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.017,0.27,0.713 1|1:2:0,0,1 1|1:1.827:0.004,0.165,0.831 1|1:2:0,0,1 1|1:1.877:0.006,0.111,0.883 1|1:1.848:0.005,0.141,0.854 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0.003,0.111,0.886 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.666:0.016,0.302,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.005,0.09,0.906 1|1:1.72:0.023,0.233,0.744 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.497:0.187,0.129,0.684 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.752:0.014,0.22,0.766 0|0:0:1,0,0 +3 17548141 SNP-3.17546922. A G . PASS AR2=0.999;DR2=0.999;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17549444 SNP-3.17548225. C A . PASS AR2=0.99;DR2=0.991;AF=0.378 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 1|1:1.882:0.003,0.112,0.885 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.076:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.001 0|0:0.083:0.919,0.08,0.002 0|1:1:0,1,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.97:0,0.03,0.97 1|1:1.937:0.001,0.061,0.938 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.205:0.809,0.177,0.014 1|1:2:0,0,1 0|0:0.08:0.922,0.075,0.003 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.146,0.006 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.873,0.121,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17552952 SNP-3.17551733. A G . PASS AR2=0.858;DR2=0.87;AF=0.313 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.148:0.857,0.139,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.214:0.179,0.428,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.004:0.224,0.548,0.228 1|1:1.202:0.191,0.415,0.393 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.703:0.42,0.456,0.124 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|1:0.703:0.42,0.456,0.124 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.704:0.42,0.456,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.42,0.456,0.124 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.076:0.214,0.495,0.291 0|0:0:1,0,0 1|1:1.089:0.211,0.489,0.3 1|1:1.247:0.149,0.455,0.396 1|0:1.087:0.207,0.5,0.293 1|0:1.143:0.18,0.497,0.323 1|1:2:0,0,1 1|1:1.153:0.183,0.48,0.337 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.273:0.127,0.473,0.4 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.157:0.179,0.485,0.336 0|0:0:1,0,0 0|1:1.131:0.19,0.489,0.321 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.979:0.312,0.396,0.292 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.112:0.199,0.49,0.311 1|1:2:0,0,1 1|0:1.108:0.199,0.495,0.307 0|1:0.751:0.385,0.479,0.136 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.071:0.216,0.497,0.287 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.119:0.193,0.495,0.312 1|0:1.108:0.199,0.494,0.307 1|1:2:0,0,1 1|0:1.15:0.181,0.488,0.331 0|0:0:1,0,0 1|1:1.112:0.199,0.49,0.311 0|0:0:1,0,0 0|0:1.11:0.2,0.49,0.31 0|0:0:1,0,0 1|1:1.287:0.127,0.458,0.415 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.703:0.42,0.456,0.124 0|0:0:1,0,0 0|0:0.805:0.353,0.489,0.158 1|0:0.703:0.42,0.456,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.048:0.228,0.496,0.276 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.202:0.161,0.476,0.363 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.632:0.368,0.632,0 0|0:0:1,0,0 1|0:0.703:0.42,0.456,0.124 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.173:0.172,0.484,0.344 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.112:0.196,0.496,0.308 1|1:1.252:0.137,0.473,0.39 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.42,0.456,0.124 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.703:0.42,0.456,0.124 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|1:1.075:0.21,0.504,0.286 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.796,0.182,0.022 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.42,0.456,0.124 1|0:0.703:0.42,0.456,0.124 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.42,0.456,0.124 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.703:0.42,0.456,0.124 1|1:1.629:0.071,0.229,0.7 1|1:1.127:0.23,0.413,0.357 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.111:0.199,0.49,0.311 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.111:0.2,0.49,0.31 0|1:1.069:0.218,0.496,0.287 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.026:0.24,0.494,0.266 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.069:0.216,0.499,0.285 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.143:0.186,0.486,0.329 +3 17554980 SNP-3.17553761. C A . PASS AR2=1;DR2=1;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17559872 SNP-3.17558653. A G . PASS AR2=0.998;DR2=0.998;AF=0.321 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.031,0.125,0.843 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0,0.049,0.951 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.091:0.913,0.083,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17560581 SNP-3.17559362. A G . PASS AR2=0.973;DR2=0.978;AF=0.28 GT:DS:GP 0|0:0.33:0.674,0.322,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.855,0.141,0.005 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.886:0.003,0.107,0.89 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.882:0.004,0.111,0.886 1|1:2:0,0,1 1|1:1.886:0.003,0.107,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.089,0.002 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.818,0.172,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.808,0.182,0.009 0|0:0.194:0.817,0.172,0.011 0|0:0:1,0,0 0|0:0.155:0.849,0.147,0.004 0|0:0.169:0.838,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.161:0.039,0.761,0.2 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.967:0.299,0.434,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.865:0.004,0.128,0.869 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.163:0.837,0.162,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.627:0.457,0.46,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.144:0.86,0.135,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.54:0.558,0.344,0.098 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.003,0.107,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.834:0.009,0.148,0.843 0|0:0:1,0,0 0|0:0.165:0.843,0.148,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17561005 SNP-3.17559786. C A . PASS AR2=0.996;DR2=0.997;AF=0.372 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.614:0.395,0.595,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0.172:0.834,0.159,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17561063 SNP-3.17559844. A G . PASS AR2=0.997;DR2=0.997;AF=0.233 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.844:0.006,0.144,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.006,0.123,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.014:0.071,0.845,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17561435 SNP-3.17560216. C A . PASS AR2=0.94;DR2=0.95;AF=0.478 GT:DS:GP 0|0:0.288:0.712,0.287,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.735:0.401,0.463,0.136 0|0:0:1,0,0 1|0:0.713:0.414,0.458,0.127 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.742:0.395,0.469,0.137 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.717:0.412,0.459,0.129 0|0:0:1,0,0 0|0:0.719:0.411,0.46,0.129 0|1:0.72:0.41,0.46,0.13 0|0:0.296:0.755,0.194,0.051 1|1:2:0,0,1 0|1:0.722:0.406,0.465,0.128 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.845,0.153,0.002 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.127:0.875,0.123,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.783,0.203,0.014 0|0:0.716:0.413,0.459,0.128 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.729:0.405,0.462,0.133 1|0:0.693:0.429,0.45,0.121 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.722:0.409,0.46,0.131 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.776:0.013,0.198,0.789 0|1:0.696:0.426,0.451,0.122 1|1:2:0,0,1 0|0:0.762:0.384,0.47,0.146 1|0:0.755:0.386,0.473,0.141 1|0:0.656:0.451,0.443,0.107 0|0:0:1,0,0 0|0:0.776:0.378,0.469,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.143:0.859,0.139,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.778,0.21,0.011 0|0:0.706:0.419,0.457,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.713:0.414,0.458,0.127 0|1:0.703:0.421,0.455,0.124 0|0:0:1,0,0 0|1:0.694:0.428,0.45,0.122 1|1:2:0,0,1 0|0:0.694:0.428,0.45,0.122 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.697:0.426,0.451,0.123 0|1:0.695:0.427,0.451,0.122 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17561589 SNP-3.17560370. A G . PASS AR2=0.994;DR2=0.995;AF=0.231 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.772,0.222,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.19:0.81,0.19,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.152:0.862,0.124,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.001,0.068,0.931 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.138:0.862,0.138,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17561662 SNP-3.17560443. C A . PASS AR2=0.988;DR2=0.99;AF=0.412 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.755:0.011,0.222,0.766 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.002 1|1:1.827:0,0.173,0.827 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.058:0.943,0.056,0.001 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.781,0.215,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.824,0.174,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.119:0.895,0.091,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.147:0.857,0.139,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.523:0.079,0.319,0.602 0|1:1:0,1,0 0|0:0.059:0.942,0.058,0.001 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.852,0.128,0.02 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.14:0.868,0.124,0.008 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.021,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.25:0.763,0.223,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17562785 SNP-3.17561566. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17562831 SNP-3.17561612. C A . PASS AR2=0.987;DR2=0.991;AF=0.318 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.707:0.032,0.229,0.739 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.493:0.032,0.443,0.525 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.414:0.028,0.53,0.442 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.886:0.003,0.107,0.889 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0.11:0.892,0.106,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.004,0.097,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.497:0.086,0.331,0.583 0|0:0:1,0,0 +3 17562934 SNP-3.17561715. A G . PASS AR2=0.99;DR2=0.992;AF=0.349 GT:DS:GP 1|1:1.74:0.001,0.259,0.74 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.202:0.09,0.619,0.292 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.131:0.148,0.573,0.279 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.001,0.099,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.756:0.023,0.199,0.779 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.005,0.083,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.005,0.166,0.829 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.721:0.017,0.244,0.739 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17563063 SNP-3.17561844. C A . PASS AR2=0.994;DR2=0.995;AF=0.339 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.746,0.254,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.788,0.212,0 0|0:0:1,0,0 0|0:0.057:0.943,0.057,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|0:1:0,1,0 1|1:1.989:0,0.011,0.989 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.948:0.002,0.048,0.95 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.898:0.107,0.887,0.006 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0,0.046,0.954 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.966 1|1:1.994:0,0.006,0.994 1|1:1.988:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.996:0,0.004,0.996 1|1:1.993:0,0.007,0.993 1|1:1.986:0,0.014,0.986 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.801,0.199,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0,0.12,0.88 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17563250 SNP-3.17562031. C A . PASS AR2=0.999;DR2=0.999;AF=0.354 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.063:0.937,0.063,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.924,0.073,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17563979 SNP-3.17562760. C A . PASS AR2=0.979;DR2=0.985;AF=0.416 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.251:0.77,0.209,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.752,0.228,0.02 1|1:2:0,0,1 0|0:0.328:0.702,0.269,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.119:0.885,0.111,0.004 1|0:0.62:0.492,0.396,0.112 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0.188:0.821,0.17,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.667,0.297,0.037 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.374:0.655,0.316,0.029 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.407:0.63,0.333,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.467:0.579,0.374,0.047 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.068,0.003 0|0:0:1,0,0 0|0:0.091:0.912,0.085,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17564067 SNP-3.17562848. C A . PASS AR2=0.99;DR2=0.992;AF=0.351 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.349:0.674,0.302,0.023 0|0:0:1,0,0 0|0:0.075:0.926,0.074,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.693:0.019,0.27,0.711 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.312:0.714,0.26,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.902,0.098,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.173:0.833,0.16,0.007 0|0:0.332:0.695,0.278,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.109:0.891,0.109,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17565100 SNP-3.17563881. C A . PASS AR2=0.963;DR2=0.973;AF=0.388 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.089:0.913,0.085,0.002 0|0:0.397:0.644,0.314,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.767:0.384,0.465,0.151 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.279:0.733,0.255,0.012 0|0:0.628:0.464,0.443,0.093 0|0:0:1,0,0 1|0:0.558:0.448,0.546,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.174:0.05,0.725,0.224 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.094:0.096,0.714,0.19 1|1:1.765:0.021,0.193,0.786 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0.012,0.172,0.815 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.39:0.629,0.352,0.019 1|1:1.855:0.005,0.136,0.859 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0,0.058,0.942 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.03,0.24,0.73 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.413:0.611,0.365,0.024 0|0:0:1,0,0 0|1:0.606:0.488,0.418,0.094 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.457:0.572,0.399,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.158:0.847,0.149,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.687:0.429,0.456,0.116 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17565577 SNP-3.17564358. A G . PASS AR2=0.872;DR2=0.906;AF=0.469 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.265:0.147,0.442,0.412 1|1:2:0,0,1 1|0:1.233:0.113,0.541,0.346 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.714:0.046,0.193,0.761 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.301:0.112,0.475,0.413 0|1:1:0,1,0 1|1:1.835:0.009,0.148,0.843 0|0:0:1,0,0 1|1:1.466:0.037,0.46,0.503 1|1:2:0,0,1 1|0:1.346:0.06,0.535,0.406 1|1:1.623:0.045,0.286,0.669 1|1:1.611:0.033,0.323,0.644 1|0:1.242:0.082,0.593,0.325 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.256:0.129,0.486,0.385 1|0:1:0,1,0 1|0:1.029:0.237,0.497,0.266 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.518:0.021,0.44,0.539 1|1:1.37:0.073,0.484,0.443 1|0:1.369:0.047,0.538,0.415 1|1:1.93:0.003,0.064,0.933 0|1:0.94:0.196,0.668,0.136 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.006:0.052,0.891,0.057 0|0:0.694:0.458,0.391,0.152 0|1:1.346:0.108,0.437,0.455 1|1:1.999:0,0.001,0.999 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|1:1.452:0.024,0.5,0.476 0|0:0.634:0.462,0.443,0.096 1|1:1.747:0.01,0.232,0.757 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.518:0.057,0.368,0.575 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:1.817:0,0.182,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:0.815:0.382,0.42,0.198 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.143:0.063,0.732,0.205 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.324:0.067,0.541,0.391 1|1:2:0,0,1 1|0:0.731:0.391,0.487,0.122 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.343:0.034,0.589,0.377 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.311:0.091,0.507,0.402 0|0:0.356:0.69,0.264,0.046 0|0:0:1,0,0 1|0:0.695:0.36,0.585,0.055 1|1:2:0,0,1 1|1:1.437:0.084,0.395,0.521 1|0:0.953:0.278,0.491,0.231 1|1:1.361:0.103,0.434,0.463 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.229:0.156,0.459,0.385 1|1:1.864:0.007,0.121,0.871 1|1:1.719:0.014,0.254,0.733 1|0:0.924:0.284,0.507,0.209 1|1:1.36:0.105,0.429,0.465 1|0:1.465:0.056,0.422,0.521 0|0:0.864:0.306,0.525,0.17 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.367:0.095,0.443,0.462 1|0:0.653:0.427,0.493,0.08 0|0:0:1,0,0 1|0:1.149:0.076,0.699,0.225 1|1:2:0,0,1 0|0:0.656:0.41,0.523,0.066 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.791:0.374,0.462,0.165 0|0:0:1,0,0 1|0:1.359:0.091,0.459,0.45 0|0:0:1,0,0 0|1:1.174:0.16,0.506,0.334 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.153:0.208,0.431,0.361 0|1:1.422:0.012,0.554,0.434 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.413:0.077,0.433,0.49 1|1:1.863:0.007,0.124,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.098,0.899 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.002,0.064,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.654:0.456,0.435,0.109 1|1:1.331:0.123,0.424,0.453 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17566239 SNP-3.17565020. C A . PASS AR2=0.994;DR2=0.995;AF=0.324 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.06:0.028,0.884,0.088 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.07:0.012,0.906,0.082 1|1:1.64:0.009,0.342,0.649 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.003,0.129,0.868 0|0:0:1,0,0 1|1:1.946:0.002,0.05,0.948 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.251:0.014,0.721,0.265 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.001,0.081,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.001,0.072,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17569115 SNP-3.17567896. C A . PASS AR2=0.95;DR2=0.955;AF=0.443 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.194:0.806,0.193,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:0.808:0.363,0.465,0.172 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.855:0.328,0.489,0.183 0|1:1:0,1,0 0|1:0.88:0.314,0.493,0.193 0|0:0.221:0.82,0.139,0.041 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.24:0.122,0.517,0.362 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.899:0.303,0.494,0.202 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.853:0.329,0.489,0.182 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:0.837:0.335,0.492,0.173 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.605:0.479,0.436,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.854:0.329,0.489,0.182 0|1:0.871:0.319,0.491,0.19 1|0:0.849:0.331,0.488,0.18 1|0:0.85:0.331,0.488,0.181 0|1:0.849:0.332,0.488,0.18 0|0:0.849:0.332,0.488,0.18 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.849:0.332,0.488,0.18 0|1:0.849:0.332,0.488,0.18 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.797:0.362,0.479,0.159 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.881:0.309,0.502,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17569291 SNP-3.17568072. C A . PASS AR2=0.996;DR2=0.997;AF=0.326 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.103:0.903,0.091,0.006 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.639:0.003,0.354,0.642 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.828:0.001,0.17,0.829 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.802:0,0.197,0.803 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.04:0.004,0.952,0.044 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17571662 SNP-3.17570443. A G . PASS AR2=0.955;DR2=0.968;AF=0.259 GT:DS:GP 0|0:0:1,0,0 1|0:1.344:0.096,0.464,0.44 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.487:0.114,0.286,0.6 0|0:0:1,0,0 1|1:1.772:0.011,0.205,0.783 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.507:0.062,0.369,0.569 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.644:0.028,0.3,0.672 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.805:0.011,0.172,0.817 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.62:0.035,0.31,0.655 1|0:1.406:0.083,0.428,0.489 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.002,0.035,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.861:0.011,0.117,0.872 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.72:0.022,0.236,0.742 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.411:0.091,0.408,0.502 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.009,0.147,0.844 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.565:0.056,0.323,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.658:0.592,0.158,0.25 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.147:0.179,0.495,0.326 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.626:0.029,0.316,0.655 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17572718 SNP-3.17571499. C A . PASS AR2=0.998;DR2=0.999;AF=0.345 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.579:0.421,0.579,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17575636 SNP-3.17574417. C A . PASS AR2=0.994;DR2=0.995;AF=0.317 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.898:0.279,0.544,0.177 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.615:0.009,0.366,0.624 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.296:0.054,0.597,0.349 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17576639 SNP-3.17575420. A G . PASS AR2=0.934;DR2=0.95;AF=0.465 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.694:0.389,0.528,0.083 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.041,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.242:0.139,0.479,0.382 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 0|1:0.773:0.335,0.558,0.107 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.338:0.055,0.552,0.393 1|1:2:0,0,1 0|1:1.321:0.086,0.507,0.407 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.858:0.317,0.509,0.174 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.45:0.023,0.504,0.473 1|1:2:0,0,1 0|0:0.784:0.369,0.478,0.153 1|1:1.886:0.002,0.11,0.888 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.893:0,0.106,0.894 0|1:1.101:0.204,0.492,0.304 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.946:0.246,0.563,0.191 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.045:0.214,0.528,0.258 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.278:0.124,0.473,0.402 1|1:1.317:0.087,0.508,0.404 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.313:0.112,0.463,0.425 1|1:1.952:0.002,0.045,0.954 0|1:0.922:0.288,0.503,0.21 0|1:1:0,1,0 0|0:0.655:0.472,0.401,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.292:0.108,0.493,0.399 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.625:0.465,0.445,0.09 0|1:0.952:0.273,0.502,0.225 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.001:0.344,0.311,0.345 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.51:0.057,0.375,0.568 1|1:2:0,0,1 1|1:1.749:0.017,0.218,0.766 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.434:0.087,0.393,0.52 0|0:0:1,0,0 1|0:0.949:0.277,0.497,0.226 0|0:0:1,0,0 1|1:1.871:0.003,0.122,0.875 0|0:0:1,0,0 1|1:2:0,0,1 +3 17576948 SNP-3.17575729. C A . PASS AR2=0.994;DR2=0.995;AF=0.298 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.746:0.008,0.237,0.755 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.862:0.005,0.129,0.866 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.603:0.036,0.324,0.639 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.978:0.169,0.683,0.147 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17576971 SNP-3.17575752. A G . PASS AR2=0.915;DR2=0.941;AF=0.53 GT:DS:GP 1|1:1.796:0.003,0.197,0.8 1|1:1.432:0.08,0.408,0.512 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.219:0.163,0.454,0.382 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.539:0.045,0.372,0.583 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.315:0.122,0.441,0.437 1|1:1.586:0.032,0.35,0.618 1|1:2:0,0,1 1|1:1.402:0.077,0.443,0.48 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.508:0.056,0.38,0.564 1|1:1.636:0.046,0.272,0.682 1|1:1.734:0.012,0.241,0.746 1|1:1.474:0.034,0.459,0.508 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.613:0.018,0.35,0.632 1|1:1.28:0.117,0.486,0.397 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.427:0.06,0.452,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.532:0.041,0.385,0.573 1|1:1.681:0.009,0.302,0.689 1|1:1.741:0.021,0.218,0.761 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.439:0.081,0.4,0.52 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:1.818:0.003,0.175,0.821 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.478:0.068,0.386,0.546 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.373:0.045,0.537,0.418 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.137:0.045,0.774,0.181 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.67:0.007,0.317,0.676 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.374:0.134,0.359,0.508 0|0:0:1,0,0 1|1:1.489:0.031,0.449,0.52 0|0:0:1,0,0 1|1:1.529:0.056,0.359,0.585 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.017,0.209,0.775 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|1:0.963:0.263,0.511,0.226 0|1:1.133:0.166,0.535,0.299 1|1:1.58:0.031,0.357,0.612 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.308:0.139,0.413,0.447 1|1:1.381:0.091,0.436,0.472 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.79:0.002,0.205,0.792 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.51:0.044,0.403,0.553 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.457:0.075,0.393,0.532 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.155:0.178,0.49,0.332 1|1:1.484:0.106,0.305,0.589 0|0:0:1,0,0 1|1:1.624:0.044,0.287,0.668 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17577331 SNP-3.17576112. C A . PASS AR2=0.978;DR2=0.984;AF=0.385 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.466:0.587,0.36,0.053 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.869,0.127,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.734:0.439,0.388,0.173 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0.11:0.892,0.106,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.788,0.204,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.85,0.144,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.017,0.352,0.631 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.694:0.367,0.573,0.061 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.968,0.032,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.886,0.109,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.791,0.198,0.011 0|0:0:1,0,0 0|0:0.189:0.817,0.177,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.757,0.229,0.015 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.786:0.011,0.192,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.78,0.206,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17578832 SNP-3.17577613. A G . PASS AR2=0.968;DR2=0.978;AF=0.245 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.44:0.087,0.385,0.528 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.516:0.05,0.383,0.567 1|1:2:0,0,1 1|1:1.671:0.016,0.297,0.687 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.588:0.048,0.316,0.636 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.059,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.874,0.126,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.748,0.252,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.732,0.237,0.031 0|0:0.188:0.812,0.188,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.471:0.073,0.384,0.544 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.48:0.072,0.375,0.553 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.376:0.695,0.234,0.071 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.509:0.062,0.367,0.571 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17579282 SNP-3.17578063. C A . PASS AR2=0.986;DR2=0.989;AF=0.369 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.068:0.933,0.065,0.001 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.844,0.148,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0.456:0.544,0.456,0 0|0:0:1,0,0 0|0:0.303:0.704,0.289,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.909,0.09,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.861,0.133,0.006 0|0:0.103:0.9,0.098,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.176,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.866,0.128,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.496:0.533,0.438,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.885:0,0.115,0.885 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.412:0.588,0.412,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17579520 SNP-3.17578301. C A . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17580566 SNP-3.17579347. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17580647 SNP-3.17579428. C A . PASS AR2=0.998;DR2=0.999;AF=0.339 GT:DS:GP 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.332:0.669,0.331,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17582407 SNP-3.17581188. A G . PASS AR2=0.951;DR2=0.967;AF=0.278 GT:DS:GP 1|0:1.515:0.058,0.37,0.572 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.28:0.11,0.5,0.39 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.599:0.041,0.319,0.64 1|1:2:0,0,1 1|1:1.667:0.027,0.278,0.694 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.374:0.091,0.445,0.465 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.439:0.079,0.402,0.518 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.717:0.019,0.245,0.736 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.79:0.013,0.184,0.803 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.4:0.091,0.418,0.491 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.532:0.05,0.368,0.582 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.475:0.068,0.388,0.544 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.647:0.03,0.292,0.677 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.34:0.115,0.43,0.455 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.07:0.93,0.069,0 1|1:1.589:0.04,0.33,0.629 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.734:0.02,0.226,0.754 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.006,0.126,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.39:0.094,0.423,0.483 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.646:0.028,0.298,0.674 0|0:0:1,0,0 1|1:1.831:0.008,0.154,0.838 +3 17588477 SNP-3.17587258. A G . PASS AR2=0.979;DR2=0.983;AF=0.316 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.01,0.185,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.004,0.122,0.873 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.688:0.017,0.278,0.705 1|1:1.827:0.009,0.155,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.787:0.011,0.191,0.798 1|1:1.719:0.019,0.242,0.739 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.727:0.019,0.235,0.746 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.01,0.195,0.795 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|1:1:0,1,0 0|0:0.038:0.962,0.038,0 1|0:1:0,1,0 1|1:1.898:0.003,0.096,0.901 0|0:0.045:0.956,0.043,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.788:0.012,0.189,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.483:0.089,0.34,0.571 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.002,0.055,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.018,0.228,0.755 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.836:0.008,0.149,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.021,0.237,0.742 1|1:1.806:0.013,0.169,0.819 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.906:0.002,0.089,0.908 +3 17589116 SNP-3.17587897. C A . 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C A . PASS AR2=0.978;DR2=0.983;AF=0.413 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.916:0.311,0.462,0.227 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.313:0.717,0.253,0.03 0|0:0.143:0.864,0.13,0.007 0|1:0.441:0.583,0.392,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.694,0.283,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.005,0.183,0.812 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.5:0.568,0.365,0.068 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.852,0.144,0.004 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.244:0.77,0.215,0.014 0|0:0.274:0.745,0.237,0.019 0|0:0:1,0,0 0|0:0.143:0.862,0.134,0.005 1|1:2:0,0,1 0|0:0.214:0.799,0.188,0.013 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.14:0.864,0.132,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.75,0.231,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.824,0.167,0.01 0|0:0.106:0.896,0.101,0.003 1|1:2:0,0,1 0|0:0:1,0,0 +3 17591211 SNP-3.17589992. C A . PASS AR2=0.983;DR2=0.987;AF=0.356 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.93:0.001,0.068,0.931 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.856,0.143,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.9:0.002,0.096,0.902 0|0:0:1,0,0 0|0:0.32:0.716,0.249,0.036 0|0:0:1,0,0 0|1:1.366:0.07,0.493,0.436 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.661:0.341,0.656,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.147:0.856,0.141,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.825:0.004,0.166,0.829 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0,0.106,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.706,0.271,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.425:0,0.575,0.425 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.254:0.764,0.219,0.018 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0.246:0.77,0.213,0.017 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.875,0.118,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17591506 SNP-3.17590287cg. C A . PASS AR2=0.984;DR2=0.986;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0 0|0:0.103:0.901,0.096,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.023:0.977,0.023,0 0|0:0.034:0.966,0.034,0 0|0:0.085:0.916,0.082,0.002 0|0:0.11:0.892,0.105,0.003 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.093,0.003 0|0:0.125:0.879,0.117,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.868,0.127,0.005 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.063,0.002 0|0:0.135:0.87,0.126,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.002,0.22,0.778 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.868:0.011,0.11,0.879 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0.112:0.892,0.105,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.883,0.114,0.003 0|0:0.191:0.811,0.187,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0.135:0.87,0.126,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.112:0.891,0.105,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.002 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.081:0.92,0.078,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 +3 17591879 SNP-3.17590660. A G . PASS AR2=1;DR2=1;AF=0.339 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17592358 SNP-3.17591139. A G . PASS AR2=0.906;DR2=0.927;AF=0.405 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.062:0.188,0.562,0.25 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.692:0.022,0.264,0.714 1|1:1.628:0.082,0.208,0.71 1|1:1.482:0.067,0.383,0.549 1|0:1.522:0.052,0.373,0.574 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.539:0.051,0.358,0.59 1|1:2:0,0,1 1|1:1.3:0.127,0.446,0.427 1|1:2:0,0,1 0|1:1.413:0.086,0.414,0.5 1|0:1.295:0.123,0.458,0.419 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.888,0.107,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.777,0.212,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.649:0.03,0.29,0.68 0|0:0:1,0,0 1|0:1.164:0.183,0.47,0.347 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.203:0.161,0.475,0.364 0|0:0:1,0,0 1|1:1.68:0.034,0.251,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.926:0.245,0.583,0.171 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.885,0.11,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.273:0.134,0.458,0.408 1|0:1.13:0.16,0.55,0.29 1|1:1.329:0.111,0.449,0.44 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.13:0.209,0.451,0.34 0|0:0:1,0,0 1|1:1.503:0.041,0.416,0.543 0|0:0:1,0,0 1|1:1.199:0.155,0.491,0.354 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.114:0.2,0.485,0.314 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.68:0.025,0.271,0.704 0|0:0.81:0.309,0.572,0.119 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.278:0.133,0.455,0.412 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.888,0.107,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.015,0.13,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.335:0.111,0.443,0.446 0|0:0:1,0,0 1|1:1.481:0.065,0.389,0.546 1|1:2:0,0,1 1|0:1.398:0.089,0.423,0.488 0|1:1.18:0.132,0.555,0.312 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.989:0.199,0.612,0.189 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.394:0.093,0.42,0.487 0|0:0:1,0,0 1|0:0.817:0.322,0.538,0.14 1|0:1.184:0.167,0.483,0.35 1|0:1.164:0.175,0.487,0.338 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.857,0.136,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.349:0.114,0.422,0.464 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.382:0.092,0.435,0.474 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.012,0.159,0.829 1|1:1.82:0.012,0.157,0.831 1|1:1.637:0.026,0.311,0.663 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.57:0.051,0.327,0.621 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.328:0.114,0.445,0.442 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17593386 SNP-3.17592167. A G . PASS AR2=1;DR2=1;AF=0.233 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.971:0.029,0.971,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17593464 SNP-3.17592245. C A . PASS AR2=0.998;DR2=0.999;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.534:0,0.466,0.534 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17594845 SNP-3.17593626. C A . PASS AR2=0.999;DR2=0.999;AF=0.339 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.152:0.859,0.129,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17595808 SNP-3.17594589. C A . PASS AR2=0.944;DR2=0.96;AF=0.427 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.026:0.248,0.478,0.274 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.567:0.5,0.433,0.067 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.186:0.822,0.169,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.334:0.697,0.272,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.826:0.329,0.516,0.155 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.517:0.551,0.381,0.068 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.521:0.548,0.383,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.838,0.157,0.004 0|0:0:1,0,0 0|0:0.615:0.483,0.418,0.099 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.521:0.548,0.383,0.069 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.52:0.548,0.383,0.069 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.379:0.046,0.53,0.425 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.081:0.92,0.08,0.001 1|1:2:0,0,1 0|0:0.618:0.496,0.39,0.114 1|0:0.811:0.353,0.484,0.164 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.694:0.4,0.507,0.093 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.257:0.751,0.24,0.008 0|0:0.713:0.409,0.47,0.121 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.838:0.339,0.484,0.177 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.934,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.662:0.457,0.423,0.119 0|0:0:1,0,0 0|0:0.69:0.432,0.447,0.121 0|1:1:0,1,0 1|0:1:0,1,0 1|0:0.71:0.415,0.459,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.552:0.524,0.399,0.077 0|0:0:1,0,0 0|0:0.105:0.899,0.098,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 1|0:0.577:0.448,0.527,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17596615 SNP-3.17595396. C A . PASS AR2=0.961;DR2=0.969;AF=0.387 GT:DS:GP 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.905:0.001,0.093,0.906 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.615:0.006,0.373,0.621 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0.378:0.655,0.312,0.033 1|1:1.948:0,0.052,0.948 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.228:0.775,0.221,0.003 0|0:0.307:0.714,0.264,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.645,0.327,0.028 0|0:0.467:0.59,0.354,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.737,0.243,0.02 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.053,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.73,0.246,0.023 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|0:1:0,1,0 1|1:1.916:0.002,0.08,0.918 1|1:1.849:0.001,0.15,0.849 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0,0.151,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.094,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.334:0.692,0.281,0.027 1|1:2:0,0,1 1|1:1.882:0.006,0.105,0.888 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.11:0.893,0.103,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.809:0.009,0.172,0.818 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.004,0.085,0.911 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.004,0.121,0.875 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.9:0.006,0.088,0.906 1|1:1.966:0,0.034,0.966 1|1:1.964:0.001,0.035,0.965 0|1:1:0,1,0 0|0:0.4:0.64,0.319,0.041 0|0:0.032:0.968,0.032,0 0|0:0.338:0.693,0.277,0.03 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.294:0.736,0.235,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.271:0.745,0.239,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.379:0.656,0.309,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 1|1:1.877:0.003,0.117,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.322:0.703,0.272,0.025 0|0:0:1,0,0 0|0:0.251:0.754,0.24,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.807,0.184,0.009 0|0:0:1,0,0 1|1:1.936:0.005,0.054,0.941 0|0:0.03:0.971,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.223:0.792,0.192,0.015 0|0:0.061:0.941,0.057,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 +3 17598380 SNP-3.17597161. A G . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17598768 SNP-3.17597549. C A . PASS AR2=0.978;DR2=0.984;AF=0.388 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.284:0.738,0.239,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.354:0.681,0.283,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.311:0.712,0.264,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.328:0.693,0.286,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.341:0.689,0.281,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.415:0.629,0.326,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.84,0.152,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.424:0.623,0.33,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.415:0.629,0.326,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.908,0.091,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0,0.108,0.891 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.317:0.708,0.267,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.002,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.847,0.144,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.791,0.199,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 +3 17599074 SNP-3.17597855. A G . PASS AR2=0.915;DR2=0.939;AF=0.513 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.414:0.086,0.414,0.5 0|0:0:1,0,0 0|1:1.328:0.112,0.447,0.441 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.398:0.091,0.421,0.488 1|0:1:0,1,0 1|0:1.289:0.124,0.463,0.413 1|0:1.351:0.105,0.439,0.456 0|1:1.365:0.1,0.435,0.465 0|1:1.331:0.112,0.445,0.443 1|1:1.324:0.115,0.446,0.439 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.734:0.004,0.259,0.737 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.562:0.022,0.394,0.584 1|1:2:0,0,1 1|1:1.134:0.188,0.49,0.322 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.831:0.279,0.61,0.11 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.031:0.238,0.492,0.269 0|0:0:1,0,0 1|0:1.078:0.212,0.498,0.29 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.023:0.243,0.491,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.33:0.113,0.444,0.443 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.373:0.101,0.425,0.474 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.29:0.128,0.453,0.418 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.317:0.117,0.448,0.434 0|1:1.239:0.143,0.474,0.382 1|0:1.36:0.102,0.436,0.462 1|1:1.331:0.112,0.444,0.444 1|1:2:0,0,1 1|1:1.309:0.118,0.456,0.426 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.339:0.11,0.441,0.449 0|1:1:0,1,0 0|1:1.287:0.126,0.462,0.413 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.205:0.171,0.453,0.376 0|1:1:0,1,0 1|1:1.877:0.004,0.115,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.391:0.093,0.423,0.484 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.439:0.08,0.4,0.52 0|1:1.442:0.08,0.398,0.522 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17600387 SNP-3.17599168. A G . PASS AR2=1;DR2=1;AF=0.245 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.027:0.007,0.96,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17602120 SNP-3.17600901. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17602951 SNP-3.17601732. A G . PASS AR2=0.999;DR2=0.999;AF=0.225 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.092,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17603083 SNP-3.17601864. C A . PASS AR2=1;DR2=1;AF=0.368 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17605753 SNP-3.17604534. A G . PASS AR2=1;DR2=1;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17606218 SNP-3.17604999. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17606459 SNP-3.17605240. C A . PASS AR2=0.999;DR2=0.999;AF=0.329 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.832:0,0.168,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17607362 SNP-3.17606143. C A . PASS AR2=1;DR2=1;AF=0.368 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17607398 SNP-3.17606179. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17607425 SNP-3.17606206. C A . PASS AR2=0.999;DR2=0.999;AF=0.361 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.786:0.013,0.188,0.799 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17610485 SNP-3.17609266. C A . PASS AR2=1;DR2=1;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17610961 SNP-3.17609742. C A . PASS AR2=0.987;DR2=0.991;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.849:0.007,0.138,0.855 1|1:1.462:0.096,0.346,0.558 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.499:0.06,0.381,0.559 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.753:0.03,0.188,0.782 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.051,0.187,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.628:0.041,0.289,0.67 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17611345 SNP-3.17610126. A G . PASS AR2=0.997;DR2=0.997;AF=0.348 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.019:0.981,0.019,0 0|0:0.093:0.91,0.088,0.002 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.003 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.043:0.958,0.04,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 1|0:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17613346 SNP-3.17612127. C A . PASS AR2=1;DR2=1;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17614049 SNP-3.17612830. C A . PASS AR2=0.982;DR2=0.986;AF=0.401 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.712:0.026,0.235,0.738 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.489:0.582,0.346,0.072 0|0:0:1,0,0 0|0:0.09:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.337:0.686,0.29,0.023 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.717,0.259,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.075:0.927,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.105:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.304:0.72,0.256,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.011,0.134,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.003,0.127,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.844:0.005,0.145,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.004,0.118,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.185:0.825,0.164,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0.159:0.847,0.147,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.005,0.124,0.871 1|1:1.902:0.002,0.094,0.904 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.229:0.783,0.206,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17615482 SNP-3.17614263. A G . PASS AR2=0.982;DR2=0.985;AF=0.257 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.145:0.862,0.131,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0.049:0.951,0.049,0 1|1:1.716:0.014,0.257,0.73 0|0:0.056:0.946,0.053,0.001 0|1:1:0,1,0 1|1:1.805:0.007,0.181,0.812 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.852,0.145,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.949:0.056,0.939,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.108:0.053,0.786,0.161 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.886,0.109,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.852:0.007,0.134,0.859 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.104,0.892 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.806:0.011,0.173,0.817 1|1:1.68:0.023,0.275,0.702 1|0:1:0,1,0 1|1:1.722:0.016,0.246,0.738 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.898:0.003,0.096,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.937,0.061,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.004,0.128,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17616753 SNP-3.17615534. A G . PASS AR2=1;DR2=1;AF=0.333 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17621240 SNP-3.17620021. A G . PASS AR2=0.938;DR2=0.941;AF=0.226 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.424:0.118,0.339,0.542 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.938:0.279,0.504,0.217 1|1:2:0,0,1 1|0:1.094:0.205,0.496,0.299 1|1:1.119:0.196,0.49,0.314 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.122:0.192,0.493,0.314 1|0:0.996:0.257,0.489,0.253 1|1:2:0,0,1 0|1:1.118:0.194,0.494,0.312 1|0:1.087:0.177,0.559,0.264 1|1:2:0,0,1 0|1:1.073:0.216,0.495,0.289 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.142:0.183,0.492,0.325 0|1:1.105:0.204,0.487,0.309 1|0:1.126:0.191,0.492,0.317 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.124:0.192,0.492,0.316 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.077:0.213,0.498,0.289 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.141:0.185,0.489,0.326 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.057:0.223,0.497,0.28 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.152:0.182,0.484,0.334 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.053:0.225,0.496,0.279 1|1:1.094:0.206,0.494,0.3 1|1:2:0,0,1 0|0:0.176:0.825,0.174,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.136:0.188,0.488,0.324 0|0:0:1,0,0 1|1:2:0,0,1 +3 17621876 SNP-3.17620657. C A . PASS AR2=0.982;DR2=0.984;AF=0.41 GT:DS:GP 0|0:0.131:0.873,0.122,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.105:0.898,0.098,0.004 0|0:0.121:0.883,0.114,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.232:0.778,0.212,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.882,0.115,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.858,0.135,0.006 0|0:0:1,0,0 0|0:0.136:0.869,0.127,0.004 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.133:0.871,0.125,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.004 0|0:0.131:0.873,0.122,0.004 0|0:0:1,0,0 0|0:0.177:0.835,0.153,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.868,0.128,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.404:0.692,0.213,0.095 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.181:0.827,0.165,0.008 0|0:0.152:0.856,0.136,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.139,0.006 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.138:0.867,0.128,0.005 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.106:0.896,0.103,0.002 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17621997 SNP-3.17620778. C A . PASS AR2=0.926;DR2=0.94;AF=0.242 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.854,0.13,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.638,0.342,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.711:0.396,0.497,0.107 1|0:1.008:0.245,0.502,0.253 0|0:0.229:0.782,0.206,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.875,0.11,0.015 0|0:0.448:0.596,0.361,0.044 0|0:0:1,0,0 0|0:0.384:0.641,0.334,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.361:0.672,0.294,0.034 0|0:0.438:0.611,0.34,0.049 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.838:0.338,0.486,0.176 0|1:0.821:0.348,0.483,0.169 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.876:0.314,0.496,0.19 1|0:0.962:0.212,0.614,0.174 1|1:2:0,0,1 0|1:0.764:0.383,0.471,0.147 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.83,0.17,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.883,0.114,0.003 1|1:0.84:0.337,0.486,0.177 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.878:0.315,0.492,0.193 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.718:0.413,0.456,0.131 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.569:0.478,0.476,0.047 0|0:0.466:0.59,0.354,0.056 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.46:0.584,0.373,0.043 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.686,0.284,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.503:0.559,0.378,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.799:0.361,0.479,0.16 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.04,0.14,0.819 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.223:0.794,0.188,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.838:0.338,0.486,0.176 0|1:1.06:0.209,0.523,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17623026 SNP-3.17621807. C A . PASS AR2=0.965;DR2=0.974;AF=0.46 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.864:0.001,0.134,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.599:0.479,0.443,0.078 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.883:0,0.116,0.883 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.241:0.781,0.196,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.157:0.849,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.24:0.774,0.211,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.019:0.031,0.92,0.049 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.882,0.116,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.756:0.015,0.215,0.77 1|1:2:0,0,1 1|1:1.897:0.006,0.09,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.007,0.081,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.01,0.11,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.715:0.017,0.252,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.615:0.007,0.372,0.622 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.546:0.531,0.392,0.077 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.013,0.986 0|0:0:1,0,0 0|0:0.193:0.83,0.146,0.023 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.154:0.853,0.14,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.839,0.148,0.013 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.944:0.001,0.054,0.945 0|0:0.158:0.847,0.147,0.006 0|0:0:1,0,0 0|0:0.151:0.855,0.14,0.006 0|0:0.143:0.862,0.133,0.005 1|1:2:0,0,1 0|0:0.171:0.836,0.157,0.007 0|0:0.53:0.535,0.401,0.065 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.004,0.115,0.88 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.392:0.611,0.386,0.003 0|0:0.601:0.47,0.459,0.071 0|0:0:1,0,0 0|0:0.164:0.839,0.159,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.074,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.818,0.173,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.807,0.182,0.01 1|0:1:0,1,0 0|0:0:1,0,0 +3 17623785 SNP-3.17622566. C A . PASS AR2=0.954;DR2=0.966;AF=0.397 GT:DS:GP 0|0:0.107:0.895,0.102,0.003 1|1:1.672:0.055,0.218,0.727 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.113:0.898,0.091,0.011 0|0:0.512:0.543,0.402,0.055 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.438:0.603,0.357,0.04 0|0:0.266:0.765,0.204,0.031 0|0:0.609:0.481,0.43,0.089 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.739,0.247,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.163:0.847,0.143,0.01 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.285:0.753,0.208,0.039 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0.112:0.891,0.105,0.003 0|0:0.064:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.875,0.123,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.42:0.593,0.394,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.648:0.459,0.434,0.107 1|1:1.913:0.002,0.083,0.915 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.842:0.007,0.144,0.849 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.099:0.903,0.095,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.056:0.165,0.614,0.221 1|0:1.491:0.053,0.404,0.543 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.192:0.82,0.169,0.012 1|1:2:0,0,1 0|0:0.17:0.837,0.156,0.007 0|0:0.097:0.905,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.481:0.575,0.369,0.056 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.888,0.106,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.475:0.572,0.381,0.047 0|0:0.282:0.738,0.242,0.02 0|0:0.24:0.77,0.22,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.897,0.102,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|0:0.123:0.881,0.114,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.483:0.568,0.38,0.052 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.894,0.102,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0.12:0.882,0.116,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.424:0.61,0.355,0.035 0|0:0:1,0,0 0|0:0.111:0.89,0.109,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.895,0.102,0.002 1|1:2:0,0,1 0|0:0:1,0,0 +3 17625611 SNP-3.17624392. A G . PASS AR2=0.999;DR2=0.999;AF=0.245 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.971,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17626123 SNP-3.17624904. C A . PASS AR2=0.979;DR2=0.985;AF=0.288 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.042,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.945:0,0.055,0.945 1|1:2:0,0,1 0|0:0.219:0.782,0.218,0 1|1:1.867:0.005,0.122,0.872 0|0:0.171:0.838,0.153,0.009 0|0:0:1,0,0 1|1:1.702:0.021,0.255,0.724 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.455:0.059,0.427,0.514 1|1:1.975:0,0.025,0.975 1|1:1.948:0,0.052,0.948 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.314:0.106,0.474,0.42 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.634:0.403,0.56,0.037 1|1:1.481:0.062,0.395,0.543 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.694:0.01,0.287,0.704 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.686:0.022,0.27,0.708 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.746:0.017,0.219,0.763 0|0:0:1,0,0 +3 17627375 SNP-3.17626156. C A . 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A G . PASS AR2=0.996;DR2=0.997;AF=0.249 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.675:0.361,0.604,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17634974 SNP-3.17633755. C A . PASS AR2=0.999;DR2=0.999;AF=0.36 GT:DS:GP 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.889,0.111,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.929,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.049,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17635011 SNP-3.17633792. A G . PASS AR2=0.958;DR2=0.971;AF=0.361 GT:DS:GP 1|1:1.956:0.001,0.042,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.029,0.971 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.852:0.001,0.145,0.853 0|0:0.444:0.603,0.35,0.047 0|0:0.36:0.668,0.303,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.001,0.068,0.931 0|0:0:1,0,0 0|0:0.351:0.672,0.306,0.023 1|0:0.475:0.549,0.428,0.023 0|0:0:1,0,0 0|0:0.249:0.754,0.243,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.809,0.18,0.01 0|0:0:1,0,0 0|0:0.232:0.782,0.205,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.56:0.525,0.389,0.085 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 1|1:1.941:0.001,0.057,0.942 1|1:1.947:0.001,0.052,0.947 1|1:1.924:0.001,0.073,0.926 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.964:0.001,0.033,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.005,0.185,0.81 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.81:0.004,0.181,0.815 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.001,0.072,0.927 1|1:1.925:0.002,0.072,0.926 1|1:1.942:0.001,0.056,0.943 1|1:1.947:0.001,0.052,0.947 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.64:0.465,0.429,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.518:0.555,0.372,0.073 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.618:0.468,0.445,0.087 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.598:0.499,0.403,0.098 0|0:0:1,0,0 0|0:0.247:0.767,0.22,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.71,0.277,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.947 1|1:1.963:0,0.036,0.964 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.443:0.603,0.352,0.045 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.001,0.071,0.927 1|1:1.945:0.001,0.054,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.849,0.15,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.96 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17636302 SNP-3.17635083. C A . PASS AR2=0.997;DR2=0.997;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.96,0.04,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.88:0,0.12,0.88 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.912,0.088,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17639132 SNP-3.17637913. A G . PASS AR2=0.999;DR2=0.999;AF=0.233 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.002,0.069,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17639226 SNP-3.17638007. C A . PASS AR2=0.986;DR2=0.989;AF=0.42 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.35:0.678,0.295,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.345:0.684,0.286,0.03 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.288:0.731,0.25,0.019 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.761,0.218,0.021 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.817,0.171,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.243:0.767,0.223,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.853,0.141,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.206:0.806,0.182,0.012 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.091:0.909,0.09,0.001 0|0:0.316:0.705,0.274,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.193:0.813,0.181,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17642147 SNP-3.17640928. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17643112 SNP-3.17641893. C A . PASS AR2=0.973;DR2=0.978;AF=0.429 GT:DS:GP 0|0:0.353:0.668,0.31,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.342:0.688,0.283,0.029 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.247:0.765,0.224,0.011 0|0:0.296:0.727,0.25,0.023 0|0:0.352:0.679,0.29,0.031 0|0:0.292:0.729,0.251,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.325:0.702,0.271,0.027 0|0:0.307:0.715,0.262,0.023 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.825,0.17,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.131:0.874,0.121,0.005 0|0:0.157:0.849,0.144,0.007 0|0:0.133:0.87,0.127,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.126:0.876,0.123,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.052:0.948,0.052,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.15:0.854,0.142,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.779,0.205,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.174:0.832,0.161,0.007 0|1:1:0,1,0 0|0:0.228:0.786,0.199,0.015 0|0:0.212:0.801,0.186,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.76,0.223,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.879,0.115,0.005 0|0:0.062:0.939,0.06,0.001 0|0:0.126:0.879,0.115,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.943,0.055,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.051,0.002 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.716,0.261,0.023 1|1:2:0,0,1 0|0:0:1,0,0 +3 17643875 SNP-3.17642656. C A . PASS AR2=0.997;DR2=0.997;AF=0.388 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.892,0.104,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.064:0.938,0.061,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.094:0.908,0.089,0.002 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17644445 SNP-3.17643226. A G . PASS AR2=0.998;DR2=0.998;AF=0.332 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.961 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.06,0.94 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17644856 SNP-3.17643637. C A . PASS AR2=0.971;DR2=0.976;AF=0.427 GT:DS:GP 0|0:0.301:0.72,0.26,0.02 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.856,0.139,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.156:0.849,0.146,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.885,0.111,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.136:0.868,0.127,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.202:0.805,0.187,0.007 0|0:0:1,0,0 0|0:0.238:0.773,0.215,0.011 0|0:0.07:0.931,0.067,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.838,0.154,0.008 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.158:0.849,0.143,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.766,0.221,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.823,0.165,0.012 0|0:0:1,0,0 0|0:0.139:0.868,0.125,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.289:0.733,0.244,0.022 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.213:0.798,0.19,0.012 1|1:1.922:0.001,0.076,0.923 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.177:0.833,0.158,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.279:0.738,0.245,0.017 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.845,0.147,0.007 1|1:2:0,0,1 0|0:0.223:0.79,0.196,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.132:0.873,0.123,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.323:0.703,0.272,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.889,0.108,0.002 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.874,0.122,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.851,0.143,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.231:0.781,0.206,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.115,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.728,0.25,0.022 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.946,0.054,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.918,0.078,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.746,0.234,0.02 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.139:0.866,0.128,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.868,0.126,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.916:0.002,0.08,0.918 0|0:0:1,0,0 +3 17647013 SNP-3.17645794. C A . PASS AR2=0.963;DR2=0.971;AF=0.371 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.021,0.236,0.742 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.924:0.287,0.501,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.925:0.287,0.502,0.212 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.318:0.098,0.486,0.416 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.802:0.366,0.467,0.168 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.689:0.024,0.262,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.484:0.059,0.398,0.543 1|1:2:0,0,1 1|1:1.692:0.024,0.261,0.715 1|1:1.735:0.018,0.23,0.753 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.635:0.472,0.421,0.107 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.673:0.034,0.259,0.707 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.922:0.301,0.475,0.224 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.828:0.332,0.509,0.16 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.624:0.482,0.412,0.106 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0.027,0.244,0.729 1|1:2:0,0,1 0|0:0.922:0.289,0.501,0.21 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17650140 SNP-3.17648921. C A . PASS AR2=0.967;DR2=0.973;AF=0.338 GT:DS:GP 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:1.761:0.012,0.215,0.773 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.564:0.038,0.359,0.602 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.141:0.048,0.762,0.19 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.001,0.202,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.912,0.087,0.001 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.788,0.212,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.004,0.101,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0,0.038,0.962 1|1:1.951:0,0.049,0.951 1|0:1.23:0.083,0.604,0.313 1|1:2:0,0,1 1|1:1.577:0.027,0.37,0.604 1|0:1.039:0.127,0.708,0.165 1|1:2:0,0,1 1|0:1.198:0.102,0.597,0.3 1|0:1.379:0.037,0.547,0.416 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.779:0.006,0.21,0.784 0|1:1.352:0.036,0.576,0.388 1|1:1.92:0.001,0.077,0.921 1|1:2:0,0,1 1|0:0.912:0.102,0.884,0.014 1|1:1.819:0.004,0.173,0.823 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:1.681:0.022,0.275,0.703 0|0:0:1,0,0 1|1:1.895:0.003,0.099,0.898 1|0:0.874:0.126,0.874,0 1|1:2:0,0,1 1|1:1.743:0.016,0.225,0.759 1|1:1.887:0.002,0.108,0.89 0|1:1.754:0.007,0.231,0.761 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.833:0.011,0.144,0.844 0|0:0:1,0,0 1|1:1.834:0,0.166,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.74:0.018,0.225,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0.054:0.947,0.052,0.001 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.002,0.17,0.828 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17662282 SNP-3.17661063. C A . PASS AR2=0.998;DR2=0.998;AF=0.349 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.388:0.612,0.388,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.005,0.08,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.916,0.084,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17664128 SNP-3.17662909. A G . PASS AR2=0.942;DR2=0.958;AF=0.445 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.347:0.11,0.434,0.457 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.216:0.138,0.509,0.353 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.343:0.098,0.46,0.442 1|1:1.62:0.01,0.361,0.629 0|0:0:1,0,0 0|1:1.159:0.175,0.491,0.334 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.644:0.029,0.297,0.673 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.286:0.122,0.469,0.409 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.532:0.055,0.358,0.587 1|1:1.471:0.056,0.418,0.526 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.31:0.103,0.485,0.412 0|0:0:1,0,0 1|1:1.942:0.002,0.054,0.944 0|0:0:1,0,0 1|1:1.839:0.007,0.147,0.846 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.116:0.202,0.48,0.318 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.366:0.101,0.432,0.467 1|0:1:0,1,0 0|1:1.59:0.043,0.324,0.633 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.468:0.07,0.392,0.538 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.775:0.018,0.189,0.793 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.323:0.109,0.46,0.432 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:1.577:0.024,0.375,0.601 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.198:0.169,0.464,0.367 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.353:0.109,0.429,0.462 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.77:0.017,0.195,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.727:0.022,0.229,0.749 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17667100 SNP-3.17665881. C A . PASS AR2=0.992;DR2=0.993;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.105:0.898,0.099,0.003 0|1:0.839:0.166,0.829,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.001 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.173:0.833,0.162,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.735:0.007,0.251,0.742 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.936:0,0.063,0.936 1|0:1:0,1,0 1|1:1.664:0.001,0.333,0.665 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.849,0.147,0.004 0|0:0.114:0.889,0.108,0.003 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17667874 SNP-3.17666655. C A . PASS AR2=0.975;DR2=0.98;AF=0.306 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.637:0.032,0.299,0.669 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.604:0.001,0.394,0.605 1|0:1.187:0.172,0.468,0.36 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.161:0.106,0.627,0.267 1|1:1.832:0.012,0.143,0.845 1|1:1.457:0.034,0.476,0.49 1|0:1:0,1,0 1|1:1.91:0.003,0.084,0.913 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.737:0.01,0.243,0.747 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.912:0,0.087,0.913 0|0:0:1,0,0 0|1:1.189:0.065,0.681,0.254 0|0:0:1,0,0 1|1:1.82:0.007,0.166,0.827 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.705:0.014,0.267,0.719 0|0:0:1,0,0 1|1:1.898:0.003,0.097,0.9 1|1:1.718:0.027,0.228,0.745 0|0:0:1,0,0 1|1:1.875:0,0.125,0.875 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.838:0.007,0.149,0.845 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.956:0.238,0.568,0.194 0|0:0:1,0,0 +3 17670005 SNP-3.17668786. A G . PASS AR2=1;DR2=1;AF=0.228 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17671978 SNP-3.17670759. A G . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.002,0.071,0.927 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17672027 SNP-3.17670808. A G . PASS AR2=0.998;DR2=0.999;AF=0.415 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.497:0.512,0.48,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17675851 SNP-3.17674632. A G . PASS AR2=0.887;DR2=0.913;AF=0.248 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.139:0.868,0.125,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.758:0.38,0.483,0.138 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.316:0.689,0.305,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.347:0.677,0.299,0.024 1|1:2:0,0,1 0|0:0.659:0.445,0.451,0.104 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.711:0.407,0.475,0.118 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.745:0.399,0.457,0.144 1|1:2:0,0,1 1|0:0.876:0.32,0.483,0.196 1|1:2:0,0,1 0|0:0.717:0.407,0.469,0.124 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.115:0.195,0.495,0.31 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.549:0.527,0.396,0.077 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.12:0.19,0.499,0.311 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.611:0.48,0.43,0.09 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.093:0.215,0.478,0.308 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.76,0.224,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.334:0.689,0.288,0.023 0|0:0:1,0,0 0|0:0.238:0.775,0.212,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.787:0.369,0.474,0.157 0|0:0:1,0,0 0|0:0.096:0.905,0.094,0.001 0|0:0:1,0,0 0|0:0.12:0.88,0.119,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.697,0.271,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.024:0.228,0.52,0.252 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.479:0.581,0.359,0.06 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.128:0.878,0.116,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.641:0.488,0.383,0.129 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.468:0.592,0.349,0.059 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.848:0.333,0.485,0.182 0|0:0.953:0.267,0.512,0.22 0|0:0:1,0,0 0|0:0.582:0.514,0.391,0.096 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.541:0.532,0.394,0.074 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.873:0.316,0.495,0.189 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.878,0.116,0.006 0|0:0.292:0.722,0.263,0.015 1|0:0.712:0.422,0.445,0.133 0|0:0.37:0.654,0.322,0.024 0|0:0.37:0.651,0.328,0.021 0|0:0:1,0,0 0|0:0.17:0.842,0.147,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.878,0.116,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.579:0.504,0.413,0.083 0|0:0.377:0.683,0.258,0.059 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.683:0.436,0.444,0.12 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.528:0.533,0.407,0.06 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.754,0.234,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.484:0.581,0.354,0.065 +3 17676214 SNP-3.17674995. C A . PASS AR2=0.999;DR2=0.999;AF=0.317 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.82:0.197,0.786,0.017 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17676653 SNP-3.17675434. A G . PASS AR2=0.968;DR2=0.975;AF=0.34 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.662:0.028,0.282,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.692:0.024,0.26,0.716 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.682:0.027,0.265,0.709 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.705:0.022,0.252,0.726 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.716:0.022,0.239,0.738 1|1:1.691:0.025,0.26,0.715 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.57:0.031,0.369,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.712:0.021,0.247,0.732 1|1:1.691:0.024,0.262,0.715 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.016,0.224,0.759 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.678:0.027,0.267,0.705 1|1:1.687:0.024,0.266,0.71 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.008,0.144,0.848 0|1:1:0,1,0 1|1:1.704:0.021,0.253,0.725 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.712:0.02,0.247,0.732 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.012,0.185,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.018,0.223,0.759 1|1:2:0,0,1 1|1:1.753:0.017,0.214,0.769 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.034,0.297,0.669 1|1:1.647:0.032,0.29,0.679 1|1:1.746:0.017,0.22,0.763 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17678550 SNP-3.17677331. A G . PASS AR2=0.997;DR2=0.998;AF=0.353 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|0:0.084:0.918,0.079,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17678991 SNP-3.17677772. C A . PASS AR2=1;DR2=1;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17683160 SNP-3.17681941. A G . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17683326 SNP-3.17682107. A G . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17687960 SNP-3.17686741. A G . PASS AR2=0.921;DR2=0.941;AF=0.487 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.704:0.022,0.252,0.726 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.705:0.025,0.244,0.731 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.015,0.208,0.777 0|0:0:1,0,0 1|1:1.604:0.036,0.323,0.64 1|1:1.743:0.003,0.25,0.747 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.665:0.026,0.283,0.691 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.308:0.122,0.448,0.43 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.412:0.09,0.409,0.502 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.764:0.008,0.219,0.773 1|1:1.328:0.124,0.425,0.451 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.242:0.141,0.476,0.383 1|1:2:0,0,1 0|1:1.219:0.152,0.476,0.371 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.28:0.13,0.459,0.411 1|1:2:0,0,1 0|1:1.233:0.132,0.502,0.366 1|1:2:0,0,1 0|1:1.162:0.174,0.491,0.335 0|0:0:1,0,0 1|0:1.228:0.146,0.479,0.374 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.196:0.161,0.483,0.357 1|1:2:0,0,1 1|1:1.719:0.025,0.232,0.743 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.507:0.064,0.366,0.57 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.597:0.405,0.593,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.237:0.145,0.473,0.382 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.512:0.059,0.369,0.572 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.628:0.031,0.31,0.659 0|0:0:1,0,0 1|1:1.217:0.153,0.477,0.37 1|1:1.475:0.041,0.442,0.517 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.486:0.057,0.399,0.543 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.66:0.026,0.287,0.687 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.738:0.017,0.227,0.756 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.436:0.038,0.487,0.475 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.843:0.006,0.144,0.849 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.431:0.073,0.423,0.504 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.848:0.014,0.124,0.862 1|1:2:0,0,1 1|1:1.574:0.029,0.368,0.603 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.583:0.034,0.35,0.616 0|0:0:1,0,0 1|1:1.693:0.027,0.253,0.72 1|1:1.843:0.007,0.142,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.32:0.131,0.418,0.451 1|1:1.778:0.019,0.184,0.797 1|1:1.602:0.035,0.329,0.637 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.014,0.199,0.787 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17688883 SNP-3.17687664. A G . PASS AR2=0.999;DR2=0.999;AF=0.232 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.062:0.938,0.062,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17689826 SNP-3.17688607. C A . PASS AR2=0.973;DR2=0.979;AF=0.409 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.063:0.938,0.06,0.001 1|1:1.858:0.008,0.126,0.866 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:1.859:0.008,0.126,0.867 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.408:0.033,0.526,0.441 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.598:0.498,0.405,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.128:0.877,0.119,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.132:0.872,0.123,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.124,0.005 1|1:1.913:0.006,0.076,0.919 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.557:0.531,0.381,0.088 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.182:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0.058:0.944,0.055,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.426:0.621,0.332,0.047 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.096:0.907,0.091,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.116:0.887,0.109,0.004 0|0:0.131:0.872,0.124,0.004 0|0:0.054:0.947,0.052,0.001 0|0:0.041:0.959,0.04,0.001 0|0:0.141:0.864,0.131,0.005 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.107,0.004 0|0:0:1,0,0 0|0:0.107:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.416:0.628,0.328,0.044 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.009,0.138,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.009,0.138,0.853 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.812,0.178,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17691873 SNP-3.17690654. C A . PASS AR2=0.94;DR2=0.954;AF=0.408 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.29:0.729,0.252,0.019 0|0:0.201:0.809,0.18,0.011 0|0:0.347:0.687,0.279,0.034 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.732:0.367,0.533,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.234:0.78,0.205,0.015 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.319:0.706,0.269,0.025 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.504:0.536,0.424,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.162:0.845,0.148,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.21:0.799,0.191,0.009 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0.245:0.77,0.214,0.016 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.717:0.022,0.24,0.739 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 1|1:1.682:0.026,0.265,0.709 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.825,0.167,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.734:0.007,0.253,0.741 1|1:1.589:0.042,0.326,0.631 1|1:1.895:0.002,0.102,0.897 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.497:0.075,0.354,0.571 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.75:0.016,0.218,0.766 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.269:0.749,0.233,0.018 0|0:0.178:0.828,0.166,0.006 0|0:0:1,0,0 0|1:0.329:0.693,0.285,0.022 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.197:0.812,0.178,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.662:0.403,0.533,0.064 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.857:0.338,0.467,0.195 0|0:0.322:0.699,0.28,0.021 0|0:0:1,0,0 1|1:1.949:0.002,0.047,0.951 1|1:2:0,0,1 0|0:0.34:0.692,0.276,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.57:0.5,0.431,0.069 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.42:0.632,0.316,0.052 0|1:1:0,1,0 0|0:0.319:0.705,0.271,0.024 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.781:0.018,0.183,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.237:0.777,0.208,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.696:0.033,0.239,0.728 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.847,0.145,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.291:0.729,0.251,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.815,0.174,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.002,0.045,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.774:0.316,0.594,0.09 0|0:0:1,0,0 0|0:0.154:0.85,0.146,0.004 0|0:0:1,0,0 0|0:0.238:0.774,0.213,0.012 1|1:1.831:0.01,0.148,0.842 0|0:0:1,0,0 +3 17692504 SNP-3.17691285. C A . PASS AR2=0.998;DR2=0.998;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.905:0.096,0.904,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.636:0.011,0.342,0.647 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17695096 SNP-3.17693877. A G . PASS AR2=0.924;DR2=0.944;AF=0.38 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.796:0.359,0.486,0.155 1|1:2:0,0,1 0|0:0.344:0.696,0.264,0.04 1|1:2:0,0,1 0|1:1.313:0.113,0.462,0.426 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.467:0.568,0.398,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.82:0.347,0.486,0.167 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.665:0.458,0.419,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.726:0.406,0.461,0.132 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.827,0.162,0.011 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.878,0.118,0.005 0|0:0.2:0.819,0.162,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.761,0.231,0.008 1|0:1:0,1,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.462:0.037,0.463,0.499 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.165:0.839,0.156,0.005 0|0:0:1,0,0 0|0:0.143:0.86,0.138,0.003 0|1:0.849:0.181,0.789,0.03 0|0:0.391:0.634,0.342,0.025 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.881,0.119,0.001 0|0:0.23:0.801,0.168,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.065:0.936,0.064,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.726:0.406,0.461,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.03:0.248,0.475,0.278 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.589:0.017,0.377,0.606 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.707:0.435,0.423,0.142 0|1:1.163:0.18,0.478,0.342 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.11:0.159,0.571,0.27 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.513:0.014,0.458,0.528 0|1:1.445:0.053,0.449,0.498 0|1:1:0,1,0 1|1:1.494:0.042,0.422,0.536 0|0:0:1,0,0 1|1:1.632:0.019,0.33,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.31:0.101,0.487,0.411 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.293:0.121,0.466,0.414 1|0:0.975:0.241,0.543,0.216 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.587:0.48,0.453,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.63:0.471,0.427,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.093:0.217,0.473,0.31 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.405:0.645,0.306,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17697028 SNP-3.17695809. C A . PASS AR2=0.997;DR2=0.998;AF=0.334 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.986:0,0.014,0.986 1|0:1:0,1,0 1|1:1.839:0.003,0.155,0.842 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|0:0.986:0.025,0.963,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.731:0.002,0.265,0.733 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17697157 SNP-3.17695938. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.029:0.013,0.944,0.043 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17697224 SNP-3.17696005. A G . PASS AR2=0.992;DR2=0.994;AF=0.304 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.659:0.033,0.275,0.692 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.677:0.028,0.266,0.706 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.009,0.175,0.816 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.016,0.207,0.777 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.89:0.002,0.105,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.768:0.013,0.206,0.781 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17697781 SNP-3.17696562. A G . PASS AR2=0.991;DR2=0.992;AF=0.327 GT:DS:GP 1|1:1.945:0,0.055,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.775,0.225,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.003,0.095,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.004,0.11,0.886 1|1:1.919:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.925:0.003,0.069,0.928 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.004,0.113,0.883 1|0:1:0,1,0 1|1:1.926:0.002,0.071,0.928 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.856:0.006,0.133,0.862 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.002,0.078,0.92 1|1:1.943:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.239:0.038,0.685,0.277 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17697883 SNP-3.17696664. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.928,0.072,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17698451 SNP-3.17697232. C A . PASS AR2=1;DR2=1;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17698502 SNP-3.17697283. C A . PASS AR2=0.998;DR2=0.998;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.001 0|0:0.054:0.947,0.052,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.04:0,0.96,0.04 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17698841 SNP-3.17697622. C A . PASS AR2=0.986;DR2=0.987;AF=0.388 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0,0.035,0.964 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.041:0.23,0.498,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.379:0.638,0.346,0.016 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0,0.109,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.927,0.072,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.041:0.23,0.498,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0.447:0.611,0.33,0.059 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.041:0.23,0.498,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17698925 SNP-3.17697706. C A . PASS AR2=0.99;DR2=0.993;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.669:0.022,0.286,0.692 1|1:1.92:0,0.08,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.77:0.009,0.211,0.78 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.587:0.041,0.332,0.628 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.612:0.034,0.32,0.646 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.662:0.339,0.659,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.004,0.099,0.897 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 17699075 SNP-3.17697856. C A . PASS AR2=1;DR2=1;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17700323 SNP-3.17699104. C A . PASS AR2=1;DR2=1;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17700524 SNP-3.17699305. C A . PASS AR2=0.999;DR2=0.999;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.003,0.153,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.863:0.138,0.862,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17702270 SNP-3.17701051. C A . PASS AR2=0.982;DR2=0.984;AF=0.316 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.808:0.011,0.171,0.818 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.776:0.016,0.192,0.792 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.715:0.019,0.247,0.734 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.01,0.181,0.809 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.026,0.235,0.74 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.701:0.025,0.25,0.726 1|1:1.865:0.001,0.132,0.866 0|0:0:1,0,0 1|1:1.776:0.012,0.2,0.788 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.01,0.206,0.783 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.001,0.089,0.91 1|1:1.749:0.019,0.213,0.768 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.781:0.016,0.187,0.797 1|1:1.992:0,0.008,0.992 1|1:1.931:0.001,0.067,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.05,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.847:0.006,0.142,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.724:0.019,0.239,0.742 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.759:0.019,0.204,0.778 1|1:2:0,0,1 0|0:0.073:0.932,0.064,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.01,0.117,0.874 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17702415 SNP-3.17701196. C A . PASS AR2=0.999;DR2=0.999;AF=0.38 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.016:0.985,0.015,0 0|0:0.111:0.901,0.088,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 +3 17710758 SNP-3.17709539. A G . PASS AR2=0.906;DR2=0.928;AF=0.262 GT:DS:GP 1|1:1.557:0.046,0.35,0.604 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.648:0.033,0.287,0.68 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.322:0.116,0.446,0.438 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.108:0.177,0.538,0.285 1|1:1.572:0.037,0.353,0.61 0|0:0.975:0.286,0.453,0.261 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.452:0.084,0.379,0.536 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.39:0.093,0.424,0.483 1|1:2:0,0,1 1|1:1.113:0.237,0.413,0.35 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.297:0.125,0.453,0.422 0|1:1.084:0.246,0.423,0.331 0|1:0.823:0.318,0.542,0.14 1|1:2:0,0,1 1|1:1.421:0.079,0.42,0.5 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.03:0.235,0.499,0.265 0|0:0.105:0.908,0.079,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.419:0.132,0.316,0.552 1|0:0.986:0.253,0.508,0.239 1|1:1.471:0.061,0.406,0.533 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.819:0.181,0.819,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.402:0.611,0.376,0.013 0|0:0:1,0,0 1|1:1.556:0.001,0.443,0.557 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.467:0.083,0.368,0.549 1|0:1.177:0.17,0.483,0.347 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.632:0.035,0.298,0.667 0|0:0:1,0,0 1|1:1.608:0.04,0.313,0.647 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.305:0.106,0.483,0.411 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.622:0.036,0.305,0.658 0|0:0:1,0,0 1|1:1.46:0.07,0.4,0.53 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.644:0.034,0.289,0.677 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.49:0.515,0.48,0.005 1|1:2:0,0,1 1|1:1.504:0.058,0.38,0.562 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.35:0.109,0.433,0.459 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.585:0.047,0.321,0.632 1|1:2:0,0,1 1|1:1.696:0.029,0.247,0.725 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.679:0.029,0.264,0.707 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17710982 SNP-3.17709763. C A . PASS AR2=0.997;DR2=0.998;AF=0.382 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.473:0.536,0.454,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17713163 SNP-3.17711944. A G . PASS AR2=0.999;DR2=0.999;AF=0.334 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.001,0.135,0.864 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17714585 SNP-3.17713366. C A . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17714710 SNP-3.17713491. C A . PASS AR2=1;DR2=1;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17716008 SNP-3.17714789. A G . PASS AR2=0.998;DR2=0.998;AF=0.333 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.291:0,0.709,0.291 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17717694 SNP-3.17716475. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17717750 SNP-3.17716531. C A . PASS AR2=0.996;DR2=0.997;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.935,0.064,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.311:0.69,0.309,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.456:0.553,0.437,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17718986 SNP-3.17717767. C A . PASS AR2=1;DR2=1;AF=0.35 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17721273 SNP-3.17720054. C A . PASS AR2=1;DR2=1;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17721786 SNP-3.17720567. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17723480 SNP-3.17722261. C A . PASS AR2=0.984;DR2=0.986;AF=0.403 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.076:0.926,0.073,0.002 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.052:0.243,0.462,0.295 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.946,0.051,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.804,0.187,0.009 0|1:1:0,1,0 0|0:0.138:0.867,0.127,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.87,0.129,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.088:0.914,0.084,0.002 1|0:1:0,1,0 0|0:0.292:0.728,0.252,0.02 0|1:1:0,1,0 0|0:0.286:0.729,0.256,0.015 0|0:0.135:0.873,0.119,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.773,0.212,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.746:0.317,0.621,0.063 0|0:0:1,0,0 0|0:0.081:0.92,0.078,0.002 1|1:2:0,0,1 0|0:0:1,0,0 +3 17723948 SNP-3.17722729. C A . PASS AR2=0.999;DR2=0.999;AF=0.347 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17725427 SNP-3.17724208. C A . PASS AR2=0.998;DR2=0.998;AF=0.393 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.12:0,0.88,0.12 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.752:0.044,0.16,0.796 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17725668 SNP-3.17724449. C A . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17729295 SNP-3.17728076. C A . PASS AR2=0.985;DR2=0.988;AF=0.298 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.956:0.001,0.041,0.958 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.738:0.018,0.226,0.756 1|0:1:0,1,0 1|0:0.83:0.172,0.827,0.002 1|1:1.681:0.028,0.262,0.709 1|1:1.727:0.016,0.242,0.742 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.003,0.086,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.779:0.008,0.204,0.788 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.652:0.033,0.282,0.685 1|1:1.7:0.022,0.256,0.722 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.698:0.024,0.254,0.722 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.005,0.11,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.814:0.008,0.169,0.822 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17729801 SNP-3.17728582. C A . PASS AR2=1;DR2=1;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0.001,0.079,0.919 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17737118 SNP-3.17735899. C A . 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C A . PASS AR2=0.945;DR2=0.957;AF=0.304 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.242:0.101,0.555,0.344 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.146:0.1,0.653,0.246 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0.06:0.941,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.014,0.193,0.793 1|1:2:0,0,1 1|1:1.67:0.025,0.28,0.695 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:1.932:0.001,0.067,0.932 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0,0.083,0.917 1|0:0.751:0.289,0.672,0.04 1|1:1.779:0.015,0.191,0.794 1|1:1.515:0.048,0.39,0.562 1|0:1.302:0.133,0.433,0.434 1|1:2:0,0,1 1|0:0.83:0.225,0.72,0.055 1|1:1.565:0.024,0.388,0.589 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.581:0.034,0.351,0.615 0|1:1.548:0.045,0.362,0.593 1|1:1.837:0.006,0.151,0.843 1|1:1.927:0,0.072,0.928 0|0:0:1,0,0 1|1:1.801:0.009,0.182,0.809 1|1:1.797:0.004,0.195,0.801 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.041:0.172,0.614,0.213 0|0:0.009:0.991,0.009,0 1|0:1.147:0.082,0.688,0.23 0|0:0:1,0,0 1|1:1.595:0.023,0.359,0.618 1|1:1.623:0.039,0.298,0.662 1|1:2:0,0,1 1|1:1.396:0.079,0.447,0.474 0|0:0:1,0,0 1|1:1.72:0.015,0.249,0.735 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.036,0.962 1|1:2:0,0,1 1|1:1.736:0.014,0.237,0.75 1|1:1.755:0.028,0.188,0.783 1|1:1.794:0.004,0.197,0.798 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.715:0.032,0.22,0.747 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.173:0.058,0.71,0.232 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.939,0.061,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.884:0.004,0.108,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.014,0.12,0.866 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.951:0.002,0.046,0.952 1|1:1.591:0.023,0.362,0.615 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.943:0,0.057,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17739317 SNP-3.17738098. C A . PASS AR2=0.999;DR2=0.999;AF=0.364 GT:DS:GP 0|0:0.027:0.973,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.914:0.099,0.888,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.892,0.103,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17740471 SNP-3.17739252. C A . PASS AR2=0.988;DR2=0.99;AF=0.4 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.099:0.904,0.094,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.663:0.356,0.625,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.153:0.856,0.135,0.009 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.055,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0.065:0.936,0.063,0.001 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0.09:0.912,0.087,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.92,0.078,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.886,0.114,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.179:0.829,0.164,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.887,0.11,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0.118:0.885,0.112,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.073,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.872,0.125,0.003 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.968:0.032,0.967,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17741343 SNP-3.17740124. A G . 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A G . PASS AR2=0.966;DR2=0.973;AF=0.23 GT:DS:GP 0|0:0.547:0.503,0.447,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.915,0.082,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.683:0.026,0.264,0.71 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.632:0.037,0.295,0.669 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.702:0.021,0.256,0.723 1|1:1.834:0,0.166,0.834 0|0:0.095:0.911,0.083,0.006 1|1:1.607:0.042,0.31,0.648 0|1:1:0,1,0 1|1:1.656:0.03,0.284,0.686 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.016,0.237,0.748 0|1:1:0,1,0 1|1:1.768:0.01,0.211,0.779 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.125:0.879,0.117,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.83:0.002,0.166,0.832 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.003,0.066,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.025,0.231,0.744 1|1:2:0,0,1 0|1:1.763:0.014,0.21,0.776 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.909:0.107,0.876,0.016 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.095:0.905,0.095,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0,0.05,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.008,0.187,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 +3 17743358 SNP-3.17742139. A G . PASS AR2=0.788;DR2=0.822;AF=0.425 GT:DS:GP 1|1:1.432:0.077,0.414,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.274:0.131,0.464,0.405 1|1:1.167:0.18,0.474,0.346 1|0:1.222:0.152,0.475,0.373 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.299:0.156,0.39,0.455 0|1:1.274:0.132,0.462,0.406 1|1:2:0,0,1 0|0:1.219:0.153,0.476,0.371 0|1:1.239:0.146,0.469,0.385 0|0:0:1,0,0 1|1:1.225:0.151,0.474,0.375 0|1:1.229:0.154,0.463,0.383 1|1:2:0,0,1 1|0:1.222:0.152,0.475,0.373 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.277:0.129,0.465,0.406 0|0:0:1,0,0 1|1:1.221:0.152,0.475,0.373 1|0:1.226:0.15,0.475,0.376 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.276:0.129,0.466,0.405 0|0:0:1,0,0 1|1:1.216:0.154,0.476,0.37 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.224:0.151,0.475,0.375 1|1:1.098:0.198,0.506,0.296 1|1:1.346:0.115,0.423,0.461 0|1:1.149:0.153,0.545,0.302 0|1:1.247:0.142,0.469,0.389 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.442:0.068,0.423,0.509 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.175:0.164,0.498,0.338 0|0:0:1,0,0 1|1:1.219:0.153,0.474,0.372 1|0:1.573:0.044,0.339,0.617 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.34:0.112,0.437,0.452 1|1:1.32:0.118,0.444,0.438 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.253:0.139,0.468,0.393 1|0:1.228:0.15,0.473,0.378 1|0:1.249:0.14,0.47,0.389 1|0:1.276:0.131,0.461,0.407 1|0:1.318:0.119,0.444,0.437 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.242:0.144,0.471,0.385 0|0:0.362:0.725,0.187,0.088 1|1:1.243:0.142,0.472,0.385 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.233:0.148,0.472,0.38 0|1:1.279:0.13,0.461,0.409 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.841,0.159,0 0|0:0:1,0,0 1|1:1.864:0.002,0.132,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.302:0.124,0.45,0.426 1|1:1.698:0.057,0.188,0.755 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.386:0.101,0.412,0.487 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|0:1.248:0.141,0.47,0.389 0|1:1.316:0.119,0.447,0.435 1|0:1.306:0.123,0.448,0.429 1|1:2:0,0,1 1|0:0.98:0.263,0.495,0.242 0|0:0:1,0,0 1|1:1.237:0.15,0.464,0.386 0|0:0.992:0.293,0.422,0.285 0|0:0.956:0.29,0.464,0.246 1|0:1.309:0.12,0.451,0.429 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.774:0.007,0.212,0.781 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.425:0.087,0.401,0.512 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.222:0.152,0.475,0.373 0|1:1.24:0.148,0.464,0.388 1|1:2:0,0,1 1|1:1.238:0.145,0.472,0.383 1|1:1.247:0.143,0.468,0.389 1|1:2:0,0,1 0|1:1.373:0.1,0.428,0.472 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.26:0.137,0.467,0.396 0|1:1.293:0.124,0.459,0.417 0|1:1.17:0.161,0.507,0.331 1|1:2:0,0,1 1|1:1.213:0.155,0.477,0.368 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.1:0.196,0.508,0.296 1|1:1.26:0.14,0.461,0.4 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.694:0.006,0.294,0.7 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.225:0.153,0.469,0.378 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.222:0.154,0.471,0.375 0|0:0:1,0,0 1|1:1.268:0.137,0.457,0.406 0|1:1.295:0.119,0.466,0.415 1|0:1.275:0.132,0.461,0.407 0|1:0.833:0.34,0.487,0.173 0|1:1.269:0.137,0.457,0.406 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.3:0.125,0.451,0.425 1|0:1.162:0.184,0.47,0.346 1|0:1.136:0.195,0.475,0.331 1|0:1.239:0.137,0.487,0.376 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.165:0.183,0.468,0.349 0|1:1.159:0.186,0.469,0.345 1|0:1.267:0.122,0.489,0.389 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.176:0.176,0.472,0.352 1|1:2:0,0,1 1|1:1.149:0.232,0.388,0.381 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.408:0.092,0.408,0.5 0|0:0:1,0,0 1|0:1.265:0.134,0.466,0.4 0|1:1.162:0.184,0.47,0.346 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.288:0.128,0.456,0.416 +3 17744426 SNP-3.17743207. A G . PASS AR2=0.878;DR2=0.907;AF=0.207 GT:DS:GP 0|0:0.548:0.522,0.408,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.75,0.231,0.018 0|0:0:1,0,0 0|0:0.34:0.689,0.282,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.336:0.692,0.28,0.028 0|0:0.305:0.718,0.258,0.023 0|0:0.062:0.94,0.057,0.002 0|0:0.335:0.693,0.279,0.028 0|1:0.517:0.541,0.402,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0.279:0.74,0.24,0.02 0|0:0:1,0,0 1|0:0.684:0.436,0.445,0.12 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.763,0.221,0.015 1|1:2:0,0,1 0|0:0.3:0.722,0.256,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.335:0.693,0.279,0.028 0|0:0.34:0.689,0.282,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.646:0.439,0.476,0.085 0|0:0.385:0.657,0.302,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.623:0.48,0.418,0.102 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.837:0.361,0.442,0.197 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.779:0.375,0.472,0.154 0|0:0:1,0,0 0|0:0.493:0.572,0.363,0.065 0|0:0:1,0,0 1|1:0.997:0.255,0.492,0.253 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.485:0.587,0.341,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.318:0.701,0.279,0.02 0|1:0.91:0.222,0.646,0.132 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.312:0.705,0.278,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.086:0.916,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.741,0.24,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.421:0.06,0.458,0.481 0|0:0:1,0,0 0|0:0.445:0.614,0.326,0.06 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.332:0.696,0.277,0.028 0|0:0:1,0,0 0|0:0.38:0.662,0.296,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.763,0.22,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.446:0.649,0.255,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.325:0.702,0.272,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.322:0.704,0.271,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.331:0.697,0.275,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.859:0.323,0.495,0.182 0|0:0:1,0,0 0|0:0.316:0.709,0.266,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.782:0.373,0.473,0.155 0|0:0.231:0.787,0.195,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.763:0.385,0.468,0.147 0|0:0.219:0.796,0.188,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.218:0.798,0.187,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.382:0.653,0.311,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.722,0.254,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17746158 SNP-3.17744939. C A . PASS AR2=0.986;DR2=0.987;AF=0.28 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.9:0.235,0.629,0.135 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.927,0.064,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.881:0.004,0.111,0.885 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.03:0.232,0.505,0.263 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0,0.156,0.844 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.888:0.002,0.108,0.89 1|1:1.854:0.003,0.14,0.857 0|0:0:1,0,0 1|1:1.967:0.001,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.944:0.25,0.557,0.194 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.002,0.102,0.896 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.001,0.079,0.92 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.876:0.003,0.118,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.723:0.017,0.243,0.74 0|0:0:1,0,0 +3 17749213 SNP-3.17747994. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.971:0.03,0.969,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17749696 SNP-3.17748477. A G . PASS AR2=1;DR2=1;AF=0.257 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17749998 SNP-3.17748779. A G . PASS AR2=0.939;DR2=0.952;AF=0.527 GT:DS:GP 1|1:1.897:0.002,0.099,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.537:0.067,0.33,0.603 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.606:0.046,0.302,0.652 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.735:0.037,0.19,0.772 1|1:1.94:0.004,0.052,0.944 0|0:0:1,0,0 1|1:1.829:0.01,0.151,0.839 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.014,0.243,0.743 1|1:2:0,0,1 0|1:1.505:0.072,0.351,0.577 1|1:2:0,0,1 1|1:1.723:0.014,0.249,0.737 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.514:0.039,0.408,0.553 0|1:1.525:0.069,0.337,0.594 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.028:0.23,0.513,0.257 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.08:0.208,0.504,0.288 0|0:0.924:0.316,0.445,0.239 1|1:1.844:0.004,0.148,0.848 1|1:1.711:0.017,0.255,0.728 1|1:2:0,0,1 1|1:1.939:0.002,0.057,0.941 0|0:0.519:0.517,0.447,0.036 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.653:0.017,0.313,0.67 1|1:1.923:0.002,0.074,0.925 1|1:1.667:0.02,0.294,0.687 0|0:0.426:0.633,0.308,0.059 1|0:1.322:0.099,0.48,0.421 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.437:0.101,0.362,0.537 1|1:1.88:0.005,0.109,0.886 1|1:2:0,0,1 1|1:1.914:0.001,0.084,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.004,0.096,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.711:0.402,0.484,0.114 1|1:1.684:0.009,0.298,0.693 1|0:0.972:0.211,0.606,0.183 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.004,0.093,0.903 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.528:0.041,0.389,0.569 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.645:0.036,0.284,0.681 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.637:0.031,0.301,0.668 1|1:1.64:0.033,0.294,0.673 1|1:1.685:0.027,0.26,0.713 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.568:0.054,0.324,0.622 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.18:0.203,0.414,0.383 1|1:1.795:0.013,0.179,0.808 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.005,0.211,0.784 1|1:1.925:0.002,0.07,0.928 1|1:1.944:0.004,0.049,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.005,0.124,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.002,0.09,0.908 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17750962 SNP-3.17749743. A G . PASS AR2=0.998;DR2=0.999;AF=0.398 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.472:0.532,0.463,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17752329 SNP-3.17751110. C A . PASS AR2=0.983;DR2=0.989;AF=0.412 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.496:0.567,0.37,0.063 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.626:0.47,0.433,0.096 1|0:1:0,1,0 0|0:0.507:0.558,0.378,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.406:0.635,0.324,0.041 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.456:0.596,0.352,0.052 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.009:0.257,0.477,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17752493 SNP-3.17751274. C A . PASS AR2=0.959;DR2=0.97;AF=0.425 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.755,0.226,0.019 0|1:0.619:0.469,0.442,0.089 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.446:0.594,0.366,0.04 1|0:0.448:0.585,0.382,0.033 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0.196:0.813,0.177,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.133:0.873,0.122,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.13,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.089,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.897,0.098,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.302:0.728,0.241,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.218:0.794,0.194,0.012 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.217:0.794,0.195,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.432:0.589,0.389,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.728,0.241,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.173:0.836,0.155,0.009 1|0:1:0,1,0 0|0:0.463:0.583,0.37,0.046 0|0:0.495:0.546,0.413,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.525:0.554,0.368,0.079 0|0:0.118:0.885,0.111,0.004 0|0:0.119:0.885,0.111,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.104:0.899,0.099,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.562:0.479,0.481,0.041 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.282:0.737,0.244,0.019 0|0:0.255:0.762,0.222,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.211:0.803,0.184,0.013 0|0:0.191:0.818,0.172,0.009 0|0:0:1,0,0 0|0:0.259:0.757,0.227,0.016 1|1:2:0,0,1 0|0:0:1,0,0 +3 17752871 SNP-3.17751652. A G . PASS AR2=1;DR2=1;AF=0.255 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17753299 SNP-3.17752080. C A . PASS AR2=0.996;DR2=0.996;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.144:0.856,0.144,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.719:0.033,0.216,0.752 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.003,0.143,0.854 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.928,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17753741 SNP-3.17752522. C A . PASS AR2=0.99;DR2=0.993;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.531:0.02,0.428,0.552 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.022,0.377,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0,0.197,0.803 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.364:0.058,0.519,0.422 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.594:0.04,0.327,0.633 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.003,0.137,0.86 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17755529 SNP-3.17754310. C A . PASS AR2=0.999;DR2=0.999;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0.001,0.024,0.975 1|1:2:0,0,1 1|1:1.906:0.001,0.092,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0.001,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17756804 SNP-3.17755585. C A . PASS AR2=0.994;DR2=0.995;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.008,0.16,0.832 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.611:0.005,0.38,0.615 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:1.981:0,0.018,0.981 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.006,0.141,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.825:0.004,0.168,0.828 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.853,0.137,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17759634 SNP-3.17758415. C A . PASS AR2=1;DR2=1;AF=0.348 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17759705 SNP-3.17758486. C A . PASS AR2=0.997;DR2=0.998;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.003,0.08,0.918 1|1:1.958:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.944:0,0.056,0.944 1|1:1.894:0.001,0.103,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.777:0.002,0.218,0.78 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17760048 SNP-3.17758829. A G . PASS AR2=0.889;DR2=0.911;AF=0.217 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.802,0.19,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.684:0.478,0.36,0.162 0|0:0:1,0,0 1|0:1.016:0.248,0.487,0.264 0|0:0:1,0,0 0|1:0.785:0.38,0.455,0.165 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.748:0.39,0.471,0.139 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.008:0.234,0.525,0.242 1|1:2:0,0,1 0|1:0.668:0.445,0.443,0.113 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.061:0.248,0.444,0.309 0|1:0.605:0.449,0.497,0.054 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.739:0.402,0.457,0.141 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.382:0.632,0.355,0.014 0|0:0.338:0.674,0.315,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.113,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.871,0.122,0.006 1|0:1.149:0.18,0.492,0.329 1|1:2:0,0,1 0|0:0.347:0.668,0.318,0.014 0|1:0.748:0.383,0.486,0.131 1|1:2:0,0,1 0|0:0.306:0.717,0.26,0.023 0|0:0.399:0.638,0.324,0.038 1|1:2:0,0,1 0|0:0.139:0.87,0.12,0.01 1|1:2:0,0,1 0|0:0.088:0.915,0.083,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.11:0.892,0.105,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.987,0.013,0 0|0:0.068:0.933,0.066,0.001 1|0:0.475:0.554,0.418,0.028 0|0:0:1,0,0 1|0:1.245:0.144,0.466,0.389 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.933:0.321,0.425,0.254 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.049:0.18,0.591,0.229 0|0:0.177:0.825,0.173,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.83,0.164,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.803,0.182,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.93:0.29,0.491,0.219 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.184:0.151,0.515,0.334 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.594:0.463,0.48,0.057 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.151:0.853,0.144,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.94,0.055,0.005 0|0:0:1,0,0 0|0:0.127:0.875,0.122,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.962:0.266,0.506,0.228 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.912,0.084,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.684:0.443,0.43,0.127 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.72:0.425,0.429,0.145 0|0:0.212:0.8,0.188,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.807,0.179,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.376:0.636,0.351,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.875,0.118,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.098,0.002 0|0:0.135:0.865,0.134,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.373:0.655,0.318,0.028 0|0:0:1,0,0 +3 17761017 SNP-3.17759798. C A . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17769310 SNP-3.17768091. C A . PASS AR2=1;DR2=1;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17772479 SNP-3.17771260. C A . PASS AR2=0.998;DR2=0.998;AF=0.413 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.007:0.001,0.991,0.008 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.862,0.132,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.996:0,0.004,0.996 1|1:1.989:0,0.011,0.989 1|1:1.992:0,0.008,0.992 1|1:1.972:0,0.028,0.972 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0,0.126,0.874 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17772942 SNP-3.17771723. A G . PASS AR2=0.994;DR2=0.995;AF=0.315 GT:DS:GP 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0.083:0.921,0.076,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.967:0.033,0.967,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.001 0|0:0:1,0,0 0|0:0.067:0.934,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.826,0.164,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.817,0.173,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.834,0.157,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.099:0.902,0.097,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17776061 SNP-3.17774842. C A . PASS AR2=0.991;DR2=0.993;AF=0.31 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.466:0.536,0.462,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.764:0.017,0.202,0.781 1|1:2:0,0,1 1|1:1.729:0.017,0.237,0.746 1|1:2:0,0,1 1|1:1.82:0.009,0.163,0.829 1|1:1.755:0.02,0.206,0.775 1|1:1.776:0.013,0.199,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17776178 SNP-3.17774959. C A . PASS AR2=0.985;DR2=0.991;AF=0.277 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.278:0.111,0.499,0.389 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.314:0.121,0.443,0.435 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.244:0.19,0.376,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.464:0.061,0.413,0.526 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17777038 SNP-3.17775819. C A . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17777759 SNP-3.17776540. A G . PASS AR2=0.993;DR2=0.994;AF=0.216 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.734:0.015,0.237,0.748 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.874:0.004,0.118,0.878 1|1:2:0,0,1 1|1:1.29:0.069,0.572,0.359 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.003,0.149,0.848 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17781236 SNP-3.17780017. A G . PASS AR2=0.93;DR2=0.945;AF=0.304 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.442:0.578,0.402,0.02 0|1:0.95:0.05,0.949,0 0|0:0.561:0.48,0.48,0.04 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.254:0.765,0.216,0.019 0|0:0:1,0,0 0|0:0.217:0.795,0.194,0.011 0|0:0:1,0,0 0|0:0.546:0.586,0.283,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.864,0.133,0.003 0|0:0.204:0.807,0.182,0.011 1|1:2:0,0,1 0|0:0.207:0.805,0.184,0.012 0|0:0:1,0,0 0|0:0.223:0.792,0.192,0.015 1|1:2:0,0,1 0|0:0.062:0.94,0.058,0.002 0|0:0:1,0,0 0|1:0.86:0.191,0.757,0.052 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.006,0.093,0.9 1|1:1.773:0.014,0.199,0.787 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.68:0.022,0.275,0.703 0|0:0:1,0,0 1|1:1.689:0.024,0.262,0.714 1|1:1.669:0.028,0.275,0.697 1|1:1.685:0.027,0.261,0.712 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.644:0.033,0.289,0.677 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.799:0.01,0.18,0.809 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.977:0.062,0.899,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.799:0.016,0.17,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.679:0.027,0.266,0.707 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.643:0.034,0.29,0.677 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.651:0.031,0.287,0.682 0|0:0.467:0.558,0.416,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.848,0.149,0.004 1|1:2:0,0,1 1|1:1.747:0.015,0.223,0.762 1|1:1.628:0.037,0.298,0.665 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.826,0.162,0.011 0|0:0.112:0.89,0.107,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.706:0.023,0.249,0.729 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 1|1:1.638:0.034,0.293,0.672 1|1:1.704:0.023,0.251,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.707:0.021,0.251,0.728 0|0:0:1,0,0 0|0:0.234:0.782,0.202,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.021,0.273,0.706 1|1:1.649:0.031,0.288,0.681 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.711:0.021,0.246,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.657:0.031,0.282,0.687 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.66:0.029,0.281,0.69 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.207:0.833,0.126,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.259:0.785,0.17,0.044 1|1:2:0,0,1 1|1:1.711:0.022,0.244,0.733 1|1:1.743:0.017,0.223,0.76 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0.001 0|0:0.11:0.895,0.1,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.627:0.037,0.298,0.664 +3 17787709 SNP-3.17786490. A G . PASS AR2=0.992;DR2=0.994;AF=0.212 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.014,0.246,0.741 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.002,0.147,0.851 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.8:0.007,0.186,0.807 1|1:1.571:0.028,0.373,0.599 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.008,0.129,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17788017 SNP-3.17786798. A G . PASS AR2=0.978;DR2=0.983;AF=0.341 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.606:0.041,0.313,0.647 1|1:1.946:0,0.054,0.946 1|1:1.919:0,0.081,0.919 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.919:0.337,0.407,0.256 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.559:0.043,0.355,0.602 1|1:2:0,0,1 1|1:1.772:0.013,0.202,0.785 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.554:0.051,0.345,0.605 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.029,0.27,0.7 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.565:0.039,0.358,0.603 1|1:1.765:0.014,0.207,0.779 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.02,0.247,0.734 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.01,0.093,0.897 1|1:1.599:0.039,0.323,0.638 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17789783 SNP-3.17788564. A G . PASS AR2=0.99;DR2=0.992;AF=0.224 GT:DS:GP 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.874,0.122,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.001,0.077,0.922 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.619:0.017,0.346,0.636 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.796:0.01,0.184,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.031,0.968 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0.001,0.031,0.967 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17790869 SNP-3.17789650. C A . PASS AR2=0.993;DR2=0.994;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.097:0.906,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.002 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.912,0.086,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.803:0.011,0.175,0.814 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.86:0.002,0.135,0.863 1|1:2:0,0,1 0|0:0.142:0.862,0.135,0.004 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.001,0.078,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 0|0:0.056:0.945,0.054,0.001 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17792735 SNP-3.17791516. C A . PASS AR2=0.988;DR2=0.99;AF=0.413 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.869,0.126,0.005 0|0:0.172:0.837,0.155,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.143,0.006 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.175,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.9:0.1,0.9,0 0|0:0:1,0,0 0|0:0.242:0.772,0.213,0.014 0|0:0:1,0,0 0|0:0.351:0.675,0.299,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.845,0.149,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.776,0.213,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.107:0.895,0.102,0.002 0|0:0:1,0,0 0|0:0.188:0.82,0.172,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.911,0.087,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17794718 SNP-3.17793499. C A . PASS AR2=0.996;DR2=0.997;AF=0.302 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.004,0.116,0.88 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.001,0.089,0.909 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.907:0.002,0.088,0.909 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.004,0.12,0.876 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.004,0.118,0.878 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.007,0.212,0.781 0|0:0:1,0,0 +3 17795243 SNP-3.17794024. A G . PASS AR2=0.993;DR2=0.994;AF=0.276 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.01,0.148,0.843 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.007,0.141,0.852 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.873:0.006,0.114,0.88 1|1:2:0,0,1 1|1:1.821:0.005,0.169,0.826 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.001,0.098,0.901 1|0:1.526:0.022,0.43,0.548 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 +3 17795350 SNP-3.17794131. C A . PASS AR2=0.975;DR2=0.979;AF=0.279 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.009,0.186,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.01,0.177,0.813 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.736:0.014,0.236,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.001,0.095,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.001,0.198,0.8 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.807:0.009,0.174,0.817 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.623:0.042,0.293,0.665 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.01,0.204,0.786 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.759:0.015,0.212,0.773 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.706:0.02,0.254,0.726 1|1:1.761:0.015,0.209,0.776 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.812:0.011,0.167,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.738:0.004,0.255,0.742 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.011,0.176,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.002,0.045,0.954 1|1:1.822:0.01,0.158,0.832 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:1.97:0,0.03,0.97 1|1:1.8:0.012,0.177,0.811 1|1:2:0,0,1 1|1:1.772:0.012,0.204,0.784 0|1:1:0,1,0 1|1:1.843:0.005,0.148,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.002,0.045,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.719:0.018,0.245,0.737 1|1:1.814:0.01,0.167,0.824 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17796195 SNP-3.17794976. C A . PASS AR2=0.999;DR2=1;AF=0.303 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.001,0.109,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17797088 SNP-3.17795869. C A . PASS AR2=0.996;DR2=0.997;AF=0.398 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.096,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.885,0.11,0.005 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.066:0.936,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.096:0.907,0.091,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.338:0.671,0.321,0.009 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17798652 SNP-3.17797433. C A . PASS AR2=0.958;DR2=0.966;AF=0.336 GT:DS:GP 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:1.722:0.037,0.203,0.76 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.91:0.287,0.515,0.197 0|0:0:1,0,0 1|1:1.259:0.154,0.433,0.413 1|1:1.376:0.087,0.45,0.463 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:1.76:0.012,0.216,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.001,0.103,0.897 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.118:0.171,0.541,0.288 1|1:2:0,0,1 0|1:1.016:0.227,0.529,0.244 1|0:1.169:0.136,0.56,0.305 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.09:0.187,0.537,0.276 1|1:2:0,0,1 1|1:1.625:0,0.374,0.626 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.554:0.044,0.357,0.599 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.002,0.06,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.936:0.002,0.059,0.938 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.617:0.043,0.296,0.66 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.002,0.061,0.937 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.809,0.19,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.556:0.006,0.432,0.562 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:1.653:0.035,0.277,0.688 1|1:1.963:0.001,0.036,0.964 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.709:0.022,0.247,0.731 1|1:1.978:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.792:0.001,0.205,0.794 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.473:0.072,0.384,0.544 0|0:0.069:0.935,0.062,0.004 0|0:0:1,0,0 1|0:0.889:0.263,0.586,0.152 0|0:0:1,0,0 1|0:1.326:0.085,0.504,0.411 0|0:0:1,0,0 +3 17799588 SNP-3.17798369. A G . PASS AR2=0.99;DR2=0.992;AF=0.316 GT:DS:GP 1|1:1.952:0,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.936:0.298,0.467,0.235 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.389:0.648,0.315,0.037 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.014,0.393,0.593 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.199:0.81,0.182,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.96,0.04,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.88,0.115,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 17802464 SNP-3.17801245. A G . PASS AR2=0.999;DR2=0.999;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17802533 SNP-3.17801314. C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17803332 SNP-3.17802113. C A . PASS AR2=0.964;DR2=0.973;AF=0.356 GT:DS:GP 0|0:0.207:0.803,0.187,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.661,0.338,0.001 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.918,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0.322:0.705,0.268,0.027 0|1:1.051:0.307,0.335,0.358 0|0:0.31:0.716,0.259,0.026 0|0:0.255:0.763,0.219,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.297:0.726,0.251,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.318:0.709,0.265,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.892,0.105,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.721:0.011,0.257,0.732 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.89:0.002,0.106,0.892 1|1:1.911:0,0.088,0.911 1|1:2:0,0,1 0|0:0.48:0.562,0.396,0.042 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.312:0.714,0.26,0.026 1|1:1.992:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.169:0.835,0.162,0.004 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.301:0.723,0.252,0.024 0|0:0:1,0,0 0|0:0.243:0.77,0.217,0.013 0|0:0:1,0,0 0|0:0.148:0.856,0.141,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0.093:0.908,0.09,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.124,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.139:0.865,0.131,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.096,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.871,0.124,0.005 0|0:0.135:0.869,0.126,0.005 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.133:0.872,0.124,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.181:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.082:0.921,0.075,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 +3 17805262 SNP-3.17804043. C A . PASS AR2=1;DR2=1;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17806401 SNP-3.17805182. C A . PASS AR2=0.995;DR2=0.995;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.13:0.874,0.122,0.004 0|0:0.126:0.878,0.118,0.004 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.901,0.097,0.002 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.176:0.834,0.156,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.979:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.066,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.81:0.004,0.182,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 +3 17806488 SNP-3.17805269. A G . PASS AR2=1;DR2=1;AF=0.296 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17806804 SNP-3.17805585. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17810344 SNP-3.17809125. A G . 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C A . PASS AR2=0.988;DR2=0.991;AF=0.284 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 1|0:0.678:0.364,0.593,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.381:0.095,0.429,0.476 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.888:0.001,0.111,0.889 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.098:0.01,0.882,0.108 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.3:0.013,0.674,0.313 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0,0.049,0.951 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.005,0.119,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.733:0.006,0.255,0.739 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17811450 SNP-3.17810231. A G . PASS AR2=0.98;DR2=0.986;AF=0.308 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.706:0.391,0.512,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.371:0.657,0.315,0.028 0|0:0.229:0.78,0.211,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.005,0.172,0.823 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.438:0.593,0.375,0.031 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.372:0.66,0.309,0.032 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.396:0.642,0.321,0.037 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.304:0.715,0.266,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.498:0.561,0.38,0.059 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.883,0.112,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17811831 SNP-3.17810612. A G . PASS AR2=1;DR2=1;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17812437 SNP-3.17811218. C A . PASS AR2=0.996;DR2=0.997;AF=0.326 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.371:0.667,0.296,0.037 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.211:0.8,0.189,0.011 0|0:0.066:0.935,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17812885 SNP-3.17811666. C A . PASS AR2=0.992;DR2=0.993;AF=0.34 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0.127:0.877,0.118,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.084,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.903,0.096,0 0|0:0:1,0,0 0|0:0.129:0.875,0.121,0.004 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.037:0.014,0.935,0.051 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.116:0.887,0.11,0.003 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.154:0.852,0.142,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.256:0.761,0.223,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.119,0.004 0|0:0.096:0.907,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17814827 SNP-3.17813608. C A . PASS AR2=0.944;DR2=0.96;AF=0.343 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.586:0.503,0.408,0.089 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.272:0.745,0.239,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.491:0.559,0.39,0.05 0|0:0.196:0.817,0.17,0.013 0|0:0.331:0.699,0.271,0.03 0|0:0.487:0.573,0.366,0.06 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0.022:0.979,0.021,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.396:0.645,0.314,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.878,0.119,0.003 0|0:0.274:0.742,0.243,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.567:0.492,0.449,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.42:0.605,0.371,0.025 0|0:0:1,0,0 0|0:0.073:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|0:0.64:0.423,0.515,0.063 0|0:0.107:0.896,0.102,0.002 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 1|1:2:0,0,1 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0,0.055,0.944 0|1:0.621:0.46,0.458,0.082 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.191:0.159,0.491,0.35 0|1:1.173:0.043,0.742,0.216 0|0:0.621:0.46,0.458,0.082 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.171:0.048,0.734,0.219 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.425:0.041,0.494,0.465 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.003:0.997,0.003,0 1|1:1.43:0.044,0.481,0.474 1|1:1.939:0,0.06,0.94 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:1.954:0,0.046,0.954 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.106,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.001,0.073,0.926 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.19:0.812,0.187,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.301:0.708,0.282,0.009 0|0:0.423:0.592,0.393,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|1:1.847:0.002,0.148,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.256:0.762,0.221,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.4:0.634,0.331,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.801,0.194,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.772,0.212,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 17815796 SNP-3.17814577. C A . 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A G . PASS AR2=0.979;DR2=0.983;AF=0.357 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.384:0.616,0.384,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.258:0.761,0.22,0.019 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.16:0.85,0.139,0.01 0|0:0:1,0,0 0|0:0.133:0.871,0.124,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.963 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.811,0.189,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.097:0.903,0.097,0 0|0:0.264:0.741,0.253,0.005 1|0:0.935:0.065,0.935,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.73:0.406,0.458,0.136 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.632:0.398,0.571,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.194:0.819,0.168,0.013 1|0:1:0,1,0 0|0:0.154:0.849,0.147,0.004 1|1:1.958:0,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.224:0.79,0.195,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.524:0.017,0.442,0.541 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.746,0.247,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17816430 SNP-3.17815211. A G . PASS AR2=1;DR2=1;AF=0.233 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.974:0.037,0.952,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17817749 SNP-3.17816530. C A . PASS AR2=0.999;DR2=0.999;AF=0.305 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.996:0.004,0.995,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.001,0.063,0.936 0|0:0:1,0,0 +3 17818220 SNP-3.17817001. C A . PASS AR2=0.988;DR2=0.991;AF=0.351 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.72:0.033,0.215,0.752 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.848:0,0.152,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0,0.199,0.801 1|1:1.372:0.006,0.615,0.379 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.493:0,0.507,0.493 1|1:2:0,0,1 1|1:1.935:0,0.065,0.935 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0,0.04,0.96 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0,0.049,0.951 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0,0.059,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0,0.068,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.806:0.001,0.193,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 1|0:1:0,1,0 1|1:1.916:0.003,0.078,0.919 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.888:0.009,0.094,0.897 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.002,0.049,0.949 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.113:0,0.886,0.113 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17818324 SNP-3.17817105. C A . PASS AR2=1;DR2=1;AF=0.319 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17822048 SNP-3.17820829. C A . PASS AR2=0.99;DR2=0.993;AF=0.292 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.004,0.109,0.887 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.559:0.022,0.398,0.581 1|1:1.649:0.015,0.321,0.664 1|0:1:0,1,0 1|1:1.568:0.019,0.394,0.587 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.576:0.009,0.406,0.585 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.743:0.018,0.22,0.761 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17823232 SNP-3.17822013. A G . PASS AR2=0.993;DR2=0.995;AF=0.368 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.955 0|0:0.083:0.918,0.081,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.249:0.197,0.357,0.446 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:1.889:0.001,0.109,0.89 0|0:0:1,0,0 1|1:1.942:0,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:1.979:0,0.02,0.979 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17823757 SNP-3.17822538. C A . PASS AR2=0.964;DR2=0.976;AF=0.347 GT:DS:GP 0|0:0:1,0,0 1|0:0.623:0.478,0.42,0.101 0|0:0.623:0.478,0.42,0.101 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.571:0.513,0.403,0.084 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.161:0.121,0.597,0.282 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0.027:0.974,0.026,0 0|0:0.009:0.991,0.009,0 0|0:0.031:0.969,0.03,0 0|0:0.452:0.599,0.35,0.051 0|0:0.018:0.982,0.018,0 0|0:0.083:0.918,0.082,0.001 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.768,0.225,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.46:0.594,0.352,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.083:0.919,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.021:0,0.979,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.383:0.643,0.331,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.207:0.807,0.18,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.534:0.538,0.389,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.58:0.53,0.361,0.11 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.16:0.856,0.128,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.467:0.122,0.29,0.588 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17824014 SNP-3.17822795. C A . PASS AR2=0.98;DR2=0.984;AF=0.277 GT:DS:GP 0|0:0:1,0,0 1|0:1.2:0.172,0.456,0.372 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.656,0.332,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.637:0.034,0.294,0.671 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.217:0.105,0.572,0.323 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.295:0.092,0.521,0.387 0|1:1:0,1,0 1|0:1.23:0,0.769,0.231 0|0:0.169:0.831,0.169,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.929:0,0.07,0.929 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.902:0.002,0.094,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.963 1|1:1.978:0,0.021,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.856:0.002,0.139,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.009,0.206,0.786 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.72:0.341,0.598,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17825278 SNP-3.17824059. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17828059 SNP-3.17826840. A G . PASS AR2=0.991;DR2=0.993;AF=0.26 GT:DS:GP 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.764,0.226,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.805,0.188,0.007 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.186:0.818,0.177,0.005 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.826,0.167,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.928,0.068,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.949,0.049,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.488:0.543,0.426,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17828261 SNP-3.17827042. C A . PASS AR2=0.945;DR2=0.958;AF=0.416 GT:DS:GP 0|0:0.309:0.714,0.262,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.006:0.994,0.006,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|1:0.69:0.32,0.67,0.01 0|0:0.037:0.963,0.037,0 0|0:0.052:0.95,0.047,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.166:0.838,0.157,0.004 0|0:0.34:0.689,0.282,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.345:0.685,0.285,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.318:0.708,0.267,0.025 0|0:0.346:0.684,0.285,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.678,0.291,0.031 0|0:0.329:0.698,0.275,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.275:0.742,0.241,0.017 0|0:0.062:0.94,0.058,0.002 0|0:0.342:0.687,0.284,0.029 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.32:0.706,0.269,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.145:0.001,0.853,0.146 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.216:0.792,0.2,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.467:0.072,0.389,0.539 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.478:0.071,0.38,0.549 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.199:0.807,0.187,0.006 1|1:2:0,0,1 0|0:0.224:0.785,0.206,0.009 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.023:0.977,0.023,0 1|0:1:0,1,0 1|1:1.273:0.113,0.501,0.386 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.319:0.706,0.268,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.72,0.257,0.023 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.106:0.898,0.098,0.004 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.345:0.685,0.285,0.03 1|1:1.539:0.058,0.346,0.597 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.344:0.686,0.284,0.03 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.685,0.285,0.03 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.259:0.743,0.256,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.348:0.681,0.289,0.029 0|0:0.345:0.685,0.285,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.685,0.285,0.03 0|0:0.101:0.907,0.084,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0.348:0.683,0.287,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.685,0.285,0.03 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.75:0.382,0.486,0.132 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 +3 17831799 SNP-3.17830580. C A . PASS AR2=0.999;DR2=0.999;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.139:0.862,0.137,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.091:0.91,0.089,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17831851 SNP-3.17830632. C A . PASS AR2=0.965;DR2=0.973;AF=0.399 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.061:0.941,0.058,0.002 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.322:0.702,0.273,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.673,0.298,0.029 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.79,0.2,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.16,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.392:0.644,0.32,0.036 0|0:0:1,0,0 0|1:0.547:0.499,0.454,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.677,0.321,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.316:0.702,0.28,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.331:0.689,0.292,0.019 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.256:0.756,0.232,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.782,0.205,0.012 0|0:0:1,0,0 0|0:0.189:0.823,0.165,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.811,0.184,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.216:0.788,0.207,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.166:0.836,0.162,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.827,0.162,0.011 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.245:0.764,0.227,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.684,0.299,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.144:0.866,0.125,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.395:0.65,0.304,0.046 0|0:0.179:0.825,0.172,0.004 0|0:0.303:0.717,0.263,0.02 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.198:0.818,0.167,0.015 0|0:0.33:0.682,0.306,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.802,0.193,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.048:0.955,0.042,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17834227 SNP-3.17833008. C A . PASS AR2=0.999;DR2=0.999;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17835071 SNP-3.17833852. C A . 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C A . PASS AR2=0.993;DR2=0.994;AF=0.355 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.888,0.109,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.843,0.15,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.887,0.11,0.003 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.871,0.124,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.347:0.655,0.342,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.066:0.002,0.929,0.068 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.869,0.127,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17842285 SNP-3.17841066. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17843926 SNP-3.17842707. A G . PASS AR2=0.973;DR2=0.98;AF=0.483 GT:DS:GP 1|1:1.778:0.01,0.202,0.788 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.693:0.023,0.26,0.716 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.7:0.022,0.255,0.722 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.758:0.013,0.216,0.771 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.792:0.011,0.186,0.803 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.003,0.085,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.005,0.119,0.876 1|1:1.746:0.014,0.227,0.759 1|1:2:0,0,1 1|1:1.763:0.011,0.215,0.774 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.841,0.151,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.183:0.825,0.167,0.008 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.93:0.121,0.828,0.051 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.687:0.021,0.272,0.708 0|0:0:1,0,0 0|0:0.124:0.877,0.121,0.002 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.515:0.527,0.43,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.708:0.019,0.254,0.727 1|1:1.775:0.012,0.2,0.788 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.018,0.247,0.735 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.943:0.065,0.926,0.008 1|1:2:0,0,1 1|1:1.852:0.006,0.136,0.858 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.595:0.47,0.464,0.066 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17845162 SNP-3.17843943. A G . PASS AR2=0.908;DR2=0.93;AF=0.303 GT:DS:GP 1|0:1.355:0.119,0.407,0.474 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.17:0.837,0.156,0.007 0|0:0:1,0,0 0|0:0.112:0.894,0.101,0.006 0|0:0.139:0.866,0.129,0.005 1|1:2:0,0,1 0|0:0.228:0.784,0.204,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.733,0.246,0.021 0|0:0:1,0,0 0|0:0.259:0.753,0.234,0.013 1|1:2:0,0,1 0|0:0.135:0.868,0.128,0.003 0|0:0:1,0,0 0|0:0.096:0.906,0.091,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.175:0.834,0.158,0.009 1|1:2:0,0,1 0|0:0.068:0.932,0.068,0 0|0:0.375:0.659,0.306,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.781,0.201,0.018 0|0:0:1,0,0 0|0:0.148:0.86,0.133,0.007 0|0:0.265:0.755,0.225,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.362:0.661,0.317,0.023 1|1:2:0,0,1 0|1:1.432:0.071,0.426,0.503 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.582:0.045,0.328,0.627 0|0:0.9:0.262,0.576,0.162 0|1:1.019:0.148,0.684,0.168 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.639:0.034,0.293,0.673 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.018,0.227,0.755 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.69:0.026,0.258,0.716 1|1:1.472:0.076,0.376,0.548 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.463:0.076,0.385,0.539 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.5:0.068,0.363,0.569 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.741,0.239,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.775:0.013,0.199,0.788 0|0:0:1,0,0 0|0:0.193:0.816,0.174,0.009 0|0:0.169:0.835,0.16,0.005 0|0:0.275:0.744,0.236,0.019 0|0:0:1,0,0 0|0:0.127:0.873,0.126,0.001 0|0:0:1,0,0 0|0:0.111:0.889,0.111,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.832,0.16,0.009 0|0:0.212:0.802,0.185,0.013 0|0:0:1,0,0 0|0:0.166:0.841,0.153,0.006 0|0:0:1,0,0 0|0:0.284:0.736,0.243,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.837,0.156,0.007 0|0:0:1,0,0 1|1:1.793:0.011,0.185,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.694,0.279,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.028:0.106,0.759,0.135 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.331:0.191,0.287,0.522 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.634:0.035,0.297,0.668 1|1:2:0,0,1 1|1:1.879:0.006,0.11,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.011,0.182,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.714,0.286,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.304:0.719,0.258,0.023 0|0:0.292:0.728,0.252,0.02 0|0:0.327:0.699,0.275,0.026 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.155:0.849,0.146,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.928,0.072,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.356:0.103,0.437,0.46 0|1:1.013:0.132,0.723,0.145 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.85,0.139,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.73,0.242,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.008,0.154,0.838 0|0:0.175:0.825,0.175,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.621:0.582,0.214,0.204 0|0:0.111:0.892,0.104,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17845517 SNP-3.17844298. A G . PASS AR2=0.999;DR2=0.999;AF=0.377 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.004,0.16,0.835 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17846359 SNP-3.17845140. A G . PASS AR2=0.967;DR2=0.973;AF=0.276 GT:DS:GP 0|0:0.23:0.783,0.204,0.013 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.96:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.202:0.808,0.182,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.806,0.18,0.014 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0.027:0.973,0.027,0 0|0:0.045:0.956,0.044,0.001 0|0:0.195:0.815,0.175,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.826,0.165,0.009 0|0:0.472:0.595,0.338,0.067 1|1:1.414:0.09,0.406,0.504 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.4:0.648,0.303,0.048 0|0:0:1,0,0 0|0:0.278:0.739,0.244,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.719,0.265,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.074,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.864,0.128,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.193:0.817,0.174,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.306:0.695,0.305,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.927:0.288,0.496,0.216 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.824:0.301,0.574,0.125 0|0:0:1,0,0 0|0:0.157:0.852,0.138,0.009 0|0:0:1,0,0 0|0:0:1,0,0 +3 17846743 SNP-3.17845524. C A . PASS AR2=0.999;DR2=0.999;AF=0.345 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17846903 SNP-3.17845684. A G . PASS AR2=0.999;DR2=0.999;AF=0.511 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.944 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.946:0.001,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.059,0.939 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17847862 SNP-3.17846643. A G . PASS AR2=0.995;DR2=0.997;AF=0.372 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.626:0,0.374,0.626 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.589:0,0.41,0.589 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.213:0.003,0.781,0.216 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.907:0,0.093,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17848071 SNP-3.17846852. A G . PASS AR2=0.995;DR2=0.996;AF=0.321 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.632:0.441,0.486,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.355:0.723,0.199,0.078 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17850031 SNP-3.17848812. A G . PASS AR2=1;DR2=1;AF=0.319 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17850248 SNP-3.17849029. C A . PASS AR2=1;DR2=1;AF=0.315 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17851173 SNP-3.17849954. C A . PASS AR2=1;DR2=1;AF=0.302 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17854397 SNP-3.17853178. A G . PASS AR2=1;DR2=1;AF=0.377 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17854705 SNP-3.17853486. A G . PASS AR2=1;DR2=1;AF=0.292 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17856249 SNP-3.17855030. A G . PASS AR2=0.995;DR2=0.996;AF=0.369 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.003,0.11,0.887 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.002,0.082,0.915 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.854:0.006,0.135,0.859 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.875,0.122,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0.036:0.965,0.035,0 1|1:2:0,0,1 1|1:1.865:0.005,0.126,0.869 1|1:1.945:0.002,0.051,0.947 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.882:0.004,0.109,0.887 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17858169 SNP-3.17856950. C A . PASS AR2=0.992;DR2=0.993;AF=0.344 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.824,0.167,0.009 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.1:0.903,0.095,0.003 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.096,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0.079:0.925,0.071,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.255:0.763,0.218,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17858214 SNP-3.17856995. A G . PASS AR2=0.92;DR2=0.936;AF=0.322 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.883:0.201,0.714,0.084 1|1:1.735:0.025,0.215,0.76 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0.419:0.615,0.351,0.034 0|0:0.015:0.985,0.014,0 0|0:0.168:0.839,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.799,0.189,0.012 0|0:0:1,0,0 0|0:0.451:0.592,0.365,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 1|1:2:0,0,1 0|0:0.227:0.786,0.202,0.012 0|0:0:1,0,0 0|0:0.268:0.752,0.228,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.777,0.21,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.141:0.871,0.117,0.012 0|0:0:1,0,0 1|1:1.65:0.03,0.29,0.68 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.819,0.17,0.011 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 1|1:1.727:0.019,0.235,0.746 1|1:1.664:0.028,0.279,0.692 1|1:1.814:0.006,0.175,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.021,0.251,0.728 1|1:1.667:0.028,0.277,0.695 1|1:2:0,0,1 1|1:1.728:0.019,0.234,0.747 1|1:1.75:0.019,0.211,0.77 1|1:2:0,0,1 1|1:1.753:0.018,0.21,0.772 1|1:1.755:0.015,0.215,0.77 1|1:2:0,0,1 0|0:0.096:0.91,0.084,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.759:0.018,0.205,0.777 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.728:0.019,0.234,0.747 1|1:2:0,0,1 1|1:1.907:0.002,0.088,0.91 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.57:0.043,0.343,0.614 1|1:1.716:0.017,0.251,0.732 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.027,0.274,0.698 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.604:0.397,0.602,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.706:0.022,0.25,0.728 1|1:1.667:0.027,0.28,0.694 1|1:2:0,0,1 1|1:1.561:0.04,0.359,0.601 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.028,0.276,0.696 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.655:0.032,0.281,0.687 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.807,0.183,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.371:0.661,0.306,0.033 0|0:0.299:0.722,0.256,0.022 0|0:0:1,0,0 0|0:0.26:0.76,0.221,0.02 1|1:2:0,0,1 1|1:1.728:0.019,0.234,0.747 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.635:0.035,0.295,0.67 1|1:1.411:0.106,0.378,0.517 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.807:0.013,0.166,0.821 0|0:0.21:0.802,0.186,0.012 0|0:0.283:0.734,0.249,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.039,0.312,0.649 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:1.697:0.023,0.256,0.721 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.66:0.027,0.285,0.688 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.588:0.044,0.324,0.632 0|0:0:1,0,0 0|0:0.219:0.795,0.191,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.008,0.099,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.728:0.019,0.234,0.747 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.754:0.015,0.215,0.769 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.916,0.08,0.004 1|1:1.825:0.011,0.152,0.837 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.805:0.003,0.19,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.711:0.022,0.246,0.732 +3 17858548 SNP-3.17857329. C A . PASS AR2=0.993;DR2=0.994;AF=0.313 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.705:0.421,0.454,0.125 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.705:0.421,0.454,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.705:0.421,0.454,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17859237 SNP-3.17858018. A G . PASS AR2=1;DR2=1;AF=0.241 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17859404 SNP-3.17858185. C A . PASS AR2=0.994;DR2=0.995;AF=0.281 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.001,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.16:0.063,0.714,0.223 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.784:0.008,0.2,0.792 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.073,0.926 1|1:1.901:0.003,0.094,0.903 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.088:0.028,0.856,0.116 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.007,0.129,0.864 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17859425 SNP-3.17858206. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17861061 SNP-3.17859842. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17861116 SNP-3.17859897. A G . PASS AR2=0.871;DR2=0.907;AF=0.25 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.142,0.006 0|0:0:1,0,0 0|0:0.151:0.856,0.138,0.006 1|0:0.63:0.397,0.576,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.292:0.725,0.258,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.57:0.511,0.408,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.948:0.285,0.483,0.232 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.577:0.103,0.217,0.68 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.484:0.578,0.36,0.062 1|1:2:0,0,1 1|0:0.654:0.458,0.429,0.112 0|0:0.573:0.504,0.418,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.314:0.721,0.243,0.036 0|0:0.273:0.749,0.23,0.021 0|0:0.315:0.721,0.243,0.036 0|0:0:1,0,0 1|0:0.648:0.448,0.456,0.096 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.42:0.63,0.32,0.05 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.722,0.255,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.041:0.086,0.787,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0.246:0.77,0.213,0.016 0|0:0.265:0.754,0.227,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.161:0.163,0.512,0.325 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.358:0.677,0.289,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.51:0.556,0.378,0.066 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.126:0.15,0.574,0.276 0|0:0:1,0,0 0|0:0.536:0.537,0.39,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.073,0.002 1|1:2:0,0,1 0|0:0.439:0.612,0.336,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.928:0.318,0.435,0.246 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.529:0.542,0.387,0.071 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.331:0.677,0.314,0.008 1|0:1.239:0.15,0.461,0.389 0|0:0:1,0,0 0|0:0.184:0.833,0.149,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.498:0.564,0.375,0.062 1|0:1.141:0.122,0.615,0.263 1|0:1.312:0.022,0.644,0.334 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.003 0|0:0.452:0.591,0.366,0.043 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.312:0.72,0.248,0.032 0|0:0:1,0,0 0|0:0.67:0.435,0.46,0.105 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.69:0.472,0.366,0.162 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.496:0.542,0.419,0.039 1|1:2:0,0,1 0|0:0.451:0.597,0.354,0.049 0|0:0:1,0,0 1|1:1.282:0.125,0.468,0.407 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.778,0.209,0.013 0|0:0.035:0.966,0.033,0.001 1|1:2:0,0,1 0|0:0.014:0.986,0.013,0 0|0:0.135:0.87,0.124,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.611:0.482,0.424,0.093 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.58:0.507,0.405,0.088 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.693,0.279,0.028 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1.379:0.081,0.458,0.46 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.482:0.577,0.364,0.059 +3 17861866 SNP-3.17860647. A G . PASS AR2=1;DR2=1;AF=0.216 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17863220 SNP-3.17862001. C A . PASS AR2=0.997;DR2=0.997;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.083,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.155:0.854,0.138,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17864056 SNP-3.17862837. C A . PASS AR2=0.996;DR2=0.997;AF=0.304 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.01,0.229,0.761 1|1:1.943:0.002,0.052,0.945 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.664:0.045,0.246,0.709 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17865173 SNP-3.17863954. A G . PASS AR2=0.999;DR2=0.999;AF=0.239 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.1:0,0.899,0.101 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17865357 SNP-3.17864138. C A . PASS AR2=0.979;DR2=0.982;AF=0.337 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.161:0.182,0.474,0.343 0|0:0:1,0,0 1|1:1.161:0.182,0.474,0.343 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.457:0.073,0.396,0.53 0|0:0.316:0.754,0.176,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.116:0.214,0.457,0.329 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.193:0.166,0.475,0.359 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.909,0.091,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.232:0.15,0.468,0.382 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.193:0.166,0.475,0.359 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.913,0.075,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17872703 SNP-3.17871484. C A . 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A G . 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C A . PASS AR2=0.999;DR2=0.999;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.035:0.967,0.032,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.888,0.106,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17878064 SNP-3.17876845. C A . PASS AR2=0.998;DR2=0.998;AF=0.486 GT:DS:GP 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.001,0.069,0.93 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.063,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.055,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.988:0.018,0.975,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.002,0.044,0.953 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.023:0.977,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.002,0.039,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 +3 17878462 SNP-3.17877243. A G . PASS AR2=0.836;DR2=0.874;AF=0.35 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.654:0.026,0.294,0.68 0|1:1.387:0.094,0.425,0.481 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.388:0.096,0.42,0.484 0|1:0.806:0.203,0.788,0.009 0|0:0:1,0,0 1|1:1.752:0.019,0.209,0.771 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.394:0.092,0.422,0.486 1|1:2:0,0,1 0|1:1.386:0.096,0.421,0.482 1|0:1.394:0.092,0.422,0.486 0|0:0:1,0,0 1|1:1.438:0.08,0.403,0.518 1|1:1.478:0.069,0.384,0.547 0|0:0:1,0,0 0|1:1.407:0.088,0.417,0.495 1|1:2:0,0,1 1|1:0.97:0.241,0.548,0.211 1|0:0.987:0.222,0.569,0.209 0|0:0.946:0.261,0.532,0.207 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.557:0.066,0.312,0.622 0|1:1.072:0.212,0.504,0.284 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.108:0.202,0.488,0.31 1|0:1.031:0.232,0.505,0.263 1|0:0.955:0.24,0.565,0.195 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.199:0.131,0.539,0.33 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.401:0.098,0.403,0.499 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.335:0.109,0.446,0.445 0|1:0.776:0.39,0.443,0.166 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.533:0.586,0.295,0.119 0|1:1.49:0.074,0.361,0.564 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.715,0.283,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.623:0.048,0.281,0.671 0|0:0:1,0,0 1|0:0.579:0.454,0.513,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.135:0.211,0.444,0.346 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.445:0.605,0.345,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.527:0.064,0.345,0.591 1|1:2:0,0,1 1|0:1.256:0.139,0.465,0.395 0|0:0:1,0,0 0|1:1.366:0.116,0.402,0.482 1|1:1.547:0.063,0.327,0.61 1|1:1.538:0.043,0.375,0.581 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.512:0.072,0.345,0.583 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.4:0.09,0.42,0.49 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.205:0.164,0.467,0.369 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.002:0.202,0.594,0.204 1|0:1.242:0.14,0.479,0.382 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.396:0.091,0.421,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.41:0.088,0.415,0.497 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.129:0.188,0.495,0.317 0|0:0:1,0,0 1|0:1.012:0.246,0.497,0.257 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.477:0.074,0.375,0.551 0|1:1.12:0.184,0.512,0.304 0|0:0:1,0,0 1|0:1.127:0.173,0.527,0.3 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.734,0.262,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.011,0.134,0.855 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.451:0.076,0.397,0.527 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.685:0.325,0.665,0.01 1|1:1.433:0.089,0.388,0.523 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.456:0.075,0.395,0.53 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.674:0.442,0.442,0.116 1|1:1.819:0.04,0.101,0.859 0|1:0.729:0.405,0.461,0.134 1|1:1.273:0.135,0.457,0.408 0|0:0:1,0,0 1|1:1.338:0.113,0.436,0.451 0|1:1.027:0.225,0.523,0.252 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.051:0.243,0.464,0.293 0|0:0.697:0.429,0.446,0.125 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.548:0.059,0.334,0.607 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.493:0.571,0.365,0.064 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.188:0.169,0.475,0.356 +3 17878731 SNP-3.17877512. C A . PASS AR2=0.997;DR2=0.997;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.037:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.002,0.093,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|0:0.89:0.135,0.84,0.025 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:1.876:0,0.124,0.876 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.17:0.834,0.162,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 +3 17879535 SNP-3.17878316. C A . PASS AR2=0.99;DR2=0.993;AF=0.296 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.008,0.223,0.768 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.01,0.147,0.843 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.008,0.118,0.874 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.002,0.169,0.829 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.676:0.324,0.676,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.691:0.023,0.263,0.714 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0,0.094,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.023,0.28,0.696 0|0:0:1,0,0 +3 17879666 SNP-3.17878447. A G . PASS AR2=0.886;DR2=0.896;AF=0.322 GT:DS:GP 1|0:1.086:0.216,0.483,0.302 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.074,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0.001 0|1:0.641:0.398,0.564,0.039 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.31:0.713,0.264,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.832:0.342,0.484,0.174 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.832:0.342,0.484,0.174 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.812:0.359,0.469,0.172 1|0:0.863:0.323,0.49,0.187 1|0:0.878:0.316,0.49,0.194 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.498:0.575,0.353,0.072 0|0:0:1,0,0 0|1:0.876:0.277,0.57,0.153 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.061:0.217,0.504,0.279 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.174:0.172,0.481,0.346 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.341:0.689,0.28,0.03 0|1:1.088:0.214,0.483,0.303 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.04:0.228,0.503,0.268 1|0:0.565:0.518,0.398,0.084 1|1:2:0,0,1 1|1:1.182:0.17,0.479,0.351 1|0:1.172:0.19,0.449,0.361 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.122:0.202,0.473,0.325 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.74:0.358,0.544,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.001,0.089,0.91 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.18:0.168,0.485,0.348 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.002,0.062,0.935 1|1:2:0,0,1 0|0:0.046:0.957,0.04,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.119:0.195,0.491,0.314 0|1:0.886:0.311,0.491,0.197 1|1:1.156:0.182,0.481,0.337 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.856:0.328,0.489,0.184 1|0:0.856:0.328,0.489,0.184 1|1:2:0,0,1 1|1:1.283:0.133,0.452,0.416 0|0:0.245:0.773,0.208,0.019 0|1:1.042:0.231,0.497,0.273 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.856:0.328,0.489,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.797:0.365,0.474,0.162 1|0:0.848:0.332,0.488,0.18 0|1:0.855:0.328,0.489,0.183 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.003,0.086,0.911 1|1:1.299:0.117,0.467,0.416 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.021:0.242,0.496,0.262 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.815:0.35,0.484,0.165 1|0:0.856:0.328,0.489,0.184 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.708:0.012,0.267,0.721 1|1:1.11:0.199,0.492,0.309 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.854:0.328,0.489,0.183 1|1:1.198:0.161,0.48,0.359 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.189:0.166,0.479,0.355 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.132:0.19,0.488,0.322 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.317:0.709,0.266,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.003,0.131,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.106:0.25,0.393,0.357 0|0:0:1,0,0 0|0:0:1,0,0 +3 17879911 SNP-3.17878692. C A . PASS AR2=0.993;DR2=0.994;AF=0.294 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.001,0.095,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.734:0.017,0.233,0.75 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0,0.075,0.925 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0,0.047,0.953 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.838:0.012,0.137,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0,0.069,0.931 0|0:0.052:0.95,0.049,0.001 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.014,0.209,0.777 0|0:0:1,0,0 +3 17879955 SNP-3.17878736. A G . PASS AR2=0.941;DR2=0.958;AF=0.489 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.626:0.472,0.429,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.513:0.551,0.384,0.065 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.757:0.384,0.476,0.14 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.821:0.336,0.506,0.158 1|1:2:0,0,1 1|1:1.942:0.002,0.054,0.944 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.883:0.005,0.106,0.889 1|1:1.809:0.012,0.167,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.626:0.037,0.3,0.663 1|1:2:0,0,1 1|1:1.637:0.033,0.297,0.67 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.85:0.02,0.11,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.832:0.351,0.466,0.183 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.056:0.946,0.052,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0.015,0.163,0.821 1|1:1.918:0.003,0.075,0.922 1|1:2:0,0,1 1|1:1.89:0.004,0.103,0.893 1|1:1.567:0.05,0.333,0.617 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.697:0.03,0.243,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.512:0.552,0.384,0.064 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.325:0.696,0.283,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.09:0.201,0.507,0.291 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|1:1.357:0.107,0.43,0.463 1|1:2:0,0,1 1|1:1.452:0.069,0.409,0.521 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.545:0.053,0.35,0.597 1|0:1:0,1,0 1|1:1.618:0.037,0.309,0.654 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.46:0.076,0.387,0.537 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.603:0.489,0.419,0.092 1|1:1.762:0.022,0.194,0.784 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.793:0.011,0.185,0.804 1|1:2:0,0,1 1|1:1.893:0.005,0.097,0.898 1|1:2:0,0,1 0|0:0.575:0.51,0.406,0.085 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.722:0.002,0.274,0.724 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.78:0.013,0.194,0.793 1|1:1.74:0.018,0.224,0.758 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17880337 SNP-3.17879118. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17881301 SNP-3.17880082. C A . PASS AR2=0.998;DR2=0.999;AF=0.312 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.409:0.591,0.409,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17881763 SNP-3.17880544. A G . PASS AR2=1;DR2=1;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17882403 SNP-3.17881184. C A . PASS AR2=1;DR2=1;AF=0.309 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17882842 SNP-3.17881623. C A . PASS AR2=1;DR2=1;AF=0.315 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17891933 SNP-3.17890714. C A . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17896140 SNP-3.17894921. C A . PASS AR2=0.971;DR2=0.977;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.399:0.037,0.526,0.436 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.161:0.156,0.528,0.317 1|1:2:0,0,1 1|1:1.309:0.106,0.48,0.414 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.235:0.174,0.417,0.409 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.445:0.062,0.431,0.507 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.803:0.01,0.176,0.814 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.773:0.014,0.199,0.787 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.435:0.06,0.445,0.495 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.899:0.312,0.476,0.212 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.759:0.013,0.215,0.772 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.004,0.124,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.869:0.005,0.122,0.873 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17896605 SNP-3.17895386. A G . PASS AR2=0.988;DR2=0.99;AF=0.423 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.711:0.289,0.711,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.749:0.016,0.219,0.765 1|1:1.856:0.006,0.133,0.862 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.884:0.005,0.106,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.002,0.071,0.927 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.891:0.006,0.097,0.897 0|0:0:1,0,0 1|1:1.893:0.005,0.098,0.898 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.761:0.015,0.209,0.776 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.209:0.12,0.551,0.329 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.815:0.008,0.169,0.823 1|1:2:0,0,1 1|1:1.72:0.02,0.239,0.741 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.817,0.183,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17899309 SNP-3.17898090. C A . PASS AR2=0.994;DR2=0.995;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.096,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.196:0.815,0.174,0.011 1|1:1.873:0.003,0.122,0.875 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.138:0.867,0.128,0.005 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.005,0.146,0.849 0|0:0:1,0,0 +3 17900103 SNP-3.17898884. A G . PASS AR2=0.849;DR2=0.895;AF=0.315 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.498:0.502,0.498,0 0|1:1.472:0.07,0.388,0.542 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.34:0.103,0.453,0.443 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.525:0.058,0.359,0.583 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.133:0.16,0.546,0.293 1|1:1.465:0.072,0.39,0.537 1|1:1.389:0.094,0.423,0.483 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.313:0.123,0.441,0.436 1|1:2:0,0,1 1|1:1.334:0.111,0.443,0.445 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.283:0.128,0.462,0.41 1|1:2:0,0,1 1|1:1.34:0.114,0.433,0.454 1|0:1.33:0.113,0.445,0.443 0|1:1.275:0.132,0.461,0.407 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.351:0.106,0.436,0.457 1|0:1.339:0.11,0.441,0.449 1|0:1.313:0.118,0.45,0.432 1|0:1.14:0.185,0.489,0.326 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.339:0.11,0.441,0.449 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.913,0.085,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.703:0.329,0.639,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.688,0.312,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.328:0.111,0.45,0.439 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.341:0.109,0.441,0.45 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.244:0.145,0.465,0.389 1|0:1.395:0.093,0.419,0.488 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.496:0.063,0.379,0.558 0|0:0:1,0,0 1|1:1.322:0.145,0.388,0.467 0|0:0:1,0,0 0|1:1.335:0.111,0.443,0.446 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.298:0.123,0.456,0.421 1|1:1.481:0.067,0.384,0.549 1|1:1.339:0.11,0.441,0.449 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.503:0.062,0.373,0.565 1|1:2:0,0,1 1|1:1.274:0.118,0.491,0.391 1|1:1.496:0.063,0.379,0.558 1|1:1.511:0.058,0.373,0.569 1|0:1.097:0.161,0.581,0.258 0|0:1.064:0.171,0.595,0.234 1|1:1.496:0.063,0.379,0.558 1|1:1.34:0.11,0.441,0.449 0|0:0:1,0,0 1|0:0.481:0.519,0.481,0 0|0:0:1,0,0 1|1:1.33:0.112,0.446,0.442 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.496:0.063,0.379,0.558 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.369:0.101,0.429,0.47 0|0:0:1,0,0 1|0:1.288:0.127,0.458,0.415 1|0:1.357:0.104,0.435,0.461 1|1:1.257:0.14,0.463,0.397 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.326:0.112,0.449,0.438 1|1:1.255:0.138,0.468,0.394 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.515:0.06,0.366,0.574 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.339:0.11,0.441,0.449 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.34:0.11,0.441,0.449 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17900223 SNP-3.17899004. A G . PASS AR2=1;DR2=1;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 17900413 SNP-3.17899194. C A . PASS AR2=0.935;DR2=0.957;AF=0.468 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.448:0.604,0.344,0.052 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.639:0.041,0.279,0.68 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.514:0.553,0.38,0.067 0|0:0.385:0.644,0.326,0.029 0|0:0:1,0,0 0|0:0.096:0.915,0.073,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.564:0.517,0.403,0.08 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.462:0.59,0.357,0.052 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.452:0.602,0.344,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.533:0.538,0.391,0.071 0|0:0.095:0.907,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.674:0.405,0.515,0.079 0|0:0:1,0,0 0|0:0.502:0.566,0.365,0.068 0|0:0.666:0.449,0.436,0.115 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.23:0.781,0.207,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.551:0.527,0.396,0.077 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.37:0.666,0.298,0.036 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.767,0.213,0.02 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.567:0.522,0.39,0.088 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.55:0.521,0.409,0.071 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.517:0.55,0.382,0.068 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.49:0.589,0.332,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.554:0.523,0.4,0.077 0|0:0.489:0.571,0.37,0.059 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.369:0.666,0.298,0.036 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.963,0.035,0.002 0|0:0.504:0.56,0.375,0.065 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 +3 17902941 SNP-3.17901722. C A . PASS AR2=1;DR2=1;AF=0.315 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17905010 SNP-3.17903791. C A . PASS AR2=1;DR2=1;AF=0.3 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17905238 SNP-3.17904019. C A . PASS AR2=0.983;DR2=0.984;AF=0.334 GT:DS:GP 0|0:0.004:0.996,0.004,0 0|0:0.029:0.972,0.027,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.086:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.099:0.901,0.098,0.001 0|0:0.126:0.878,0.118,0.004 0|0:0:1,0,0 0|0:0.099:0.904,0.094,0.002 0|0:0.11:0.893,0.103,0.003 1|1:2:0,0,1 0|0:0.109:0.894,0.102,0.003 0|0:0.067:0.936,0.061,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.111:0.892,0.104,0.003 0|0:0.086:0.915,0.083,0.002 0|0:0.107:0.896,0.101,0.003 0|0:0.087:0.915,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.905,0.091,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.083:0.919,0.08,0.001 0|0:0.004:0.996,0.004,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.078:0.923,0.077,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.187:0.815,0.183,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0,0.058,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.081:0.919,0.08,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.877,0.123,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.106:0.897,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.152:0.856,0.137,0.008 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0.2:0.809,0.182,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.001:0.999,0.001,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.889,0.109,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17906462 SNP-3.17905243. C A . PASS AR2=0.994;DR2=0.994;AF=0.333 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.891,0.105,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.882,0.116,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.11:0.892,0.105,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.106:0.898,0.098,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0.13:0.875,0.119,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.01:0.014,0.961,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.001,0.076,0.923 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.877,0.121,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.831,0.163,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 +3 17906573 SNP-3.17905354. C A . PASS AR2=0.966;DR2=0.975;AF=0.275 GT:DS:GP 0|0:0.011:0.989,0.011,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 1|1:2:0,0,1 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.06,0.939 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.768:0.245,0.742,0.013 0|0:0:1,0,0 1|0:0.701:0.318,0.663,0.019 1|0:0.789:0.243,0.724,0.032 1|1:2:0,0,1 0|0:0.51:0.501,0.489,0.011 1|0:0.782:0.244,0.731,0.025 1|1:2:0,0,1 1|1:1.876:0.003,0.117,0.879 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.896:0.32,0.464,0.216 1|1:1.941:0,0.059,0.941 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.868:0.001,0.13,0.869 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.466:0.065,0.404,0.531 0|0:0:1,0,0 1|1:1.823:0.006,0.164,0.829 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.011,0.174,0.815 1|1:1.989:0,0.01,0.989 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 1|1:1.672:0.026,0.275,0.698 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.92,0.079,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.419:0.108,0.365,0.527 1|1:1.941:0.001,0.057,0.942 1|1:1.951:0,0.048,0.951 1|1:1.426:0.077,0.42,0.503 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.875:0.001,0.123,0.876 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.002,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.038,0.302,0.66 0|0:0:1,0,0 +3 17907372 SNP-3.17906153. A G . PASS AR2=0.9;DR2=0.916;AF=0.471 GT:DS:GP 1|1:2:0,0,1 0|0:0.166:0.836,0.162,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.407:0.043,0.507,0.45 0|0:0:1,0,0 0|1:1.318:0.116,0.449,0.435 0|0:0.12:0.881,0.118,0.001 0|0:0:1,0,0 1|1:1.785:0.002,0.211,0.787 1|0:1.417:0.049,0.484,0.466 0|0:0:1,0,0 1|0:0.867:0.317,0.499,0.184 1|1:2:0,0,1 1|0:0.982:0.259,0.499,0.242 0|0:0:1,0,0 0|1:0.998:0.251,0.499,0.249 1|0:1.4:0.056,0.487,0.456 0|1:1.46:0.012,0.516,0.472 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.944:0.279,0.499,0.223 1|1:0.919:0.291,0.499,0.21 0|0:0:1,0,0 0|1:0.968:0.267,0.498,0.235 0|0:1.259:0.135,0.471,0.394 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.045:0.225,0.505,0.27 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.852:0.004,0.139,0.856 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0.003,0.045,0.952 1|1:1.155:0.18,0.486,0.334 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.005,0.137,0.858 1|1:2:0,0,1 0|1:1.104:0.193,0.509,0.297 1|1:1.689:0.015,0.281,0.704 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.002,0.065,0.932 0|1:1.116:0.174,0.535,0.29 1|0:1.41:0.072,0.446,0.482 1|1:2:0,0,1 1|1:1.912:0.001,0.086,0.913 1|0:1.004:0.243,0.51,0.247 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.18:0.155,0.51,0.335 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.008,0.121,0.872 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.844:0.166,0.824,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.015:0.236,0.513,0.251 0|1:1.291:0.126,0.457,0.417 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.194:0.823,0.16,0.017 1|1:2:0,0,1 0|1:1.204:0.154,0.488,0.358 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.211:0.145,0.499,0.356 1|1:1.848:0.01,0.132,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.155:0.175,0.495,0.33 1|1:1.926:0.001,0.072,0.927 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0,0.169,0.831 1|0:1.282:0.061,0.597,0.342 0|1:1.356:0.104,0.436,0.46 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.967:0.268,0.498,0.234 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.486:0.047,0.42,0.533 1|1:1.813:0.004,0.178,0.818 0|1:1.423:0.005,0.566,0.428 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.398:0.092,0.417,0.49 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.835:0.006,0.153,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.476:0.046,0.433,0.521 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.971,0.028,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0.002,0.04,0.959 0|0:1.001:0.251,0.496,0.253 0|0:0:1,0,0 1|1:1.907:0.006,0.08,0.914 1|1:2:0,0,1 0|1:1.186:0.157,0.499,0.344 1|1:2:0,0,1 1|0:1.258:0.139,0.465,0.397 1|1:2:0,0,1 1|1:1.974:0.001,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.975:0.001,0.024,0.975 0|1:0.977:0.312,0.399,0.289 1|1:1.971:0,0.028,0.972 0|0:0:1,0,0 1|1:1.954:0.001,0.043,0.955 1|1:2:0,0,1 1|0:0.969:0.287,0.457,0.256 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.317:0.121,0.44,0.438 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.482:0.007,0.505,0.489 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.003,0.096,0.902 +3 17908145 SNP-3.17906926. C A . PASS AR2=0.992;DR2=0.994;AF=0.316 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0.035:0.966,0.034,0 1|1:2:0,0,1 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.627:0.035,0.304,0.661 0|1:1:0,1,0 1|1:1.582:0.039,0.339,0.621 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.004,0.173,0.823 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.025:0.976,0.024,0 0|0:0.029:0.971,0.028,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.064:0.937,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17909039 SNP-3.17907820. C A . PASS AR2=0.995;DR2=0.995;AF=0.329 GT:DS:GP 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.801,0.195,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 1|1:2:0,0,1 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17909506 SNP-3.17908287. C A . PASS AR2=0.973;DR2=0.979;AF=0.371 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.818,0.173,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.391:0.644,0.322,0.035 0|0:0:1,0,0 0|0:0.197:0.812,0.178,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.308:0.701,0.29,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.353:0.678,0.291,0.031 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.8,0.184,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.756,0.227,0.017 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.323:0.696,0.284,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.793:0.254,0.698,0.047 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.322:0.704,0.269,0.027 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.208:0.801,0.189,0.01 0|0:0:1,0,0 0|0:0.252:0.764,0.219,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.785,0.202,0.013 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.696,0.278,0.026 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.132:0.871,0.125,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.765,0.217,0.018 0|1:1:0,1,0 0|0:0.272:0.746,0.236,0.018 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.158:0.844,0.154,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.234:0.784,0.198,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.059:0.014,0.913,0.073 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17909598 SNP-3.17908379. A G . PASS AR2=0.939;DR2=0.953;AF=0.442 GT:DS:GP 1|1:2:0,0,1 0|0:0.085:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.724:0.408,0.461,0.132 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.897:0.297,0.509,0.194 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.63:0.462,0.447,0.091 0|0:0.032:0.968,0.032,0 0|1:1:0,1,0 0|0:0.128:0.874,0.123,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.004,0.139,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.355:0.071,0.503,0.426 1|1:1.573:0.063,0.302,0.635 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.504:0.085,0.326,0.589 1|1:1.58:0.059,0.302,0.639 1|1:2:0,0,1 0|1:1.15:0.182,0.487,0.331 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.324:0.034,0.607,0.358 1|1:2:0,0,1 1|1:1.715:0.012,0.262,0.726 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.825:0.015,0.145,0.84 1|1:1.561:0.066,0.307,0.627 1|1:1.916:0.002,0.079,0.919 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.538:0.524,0.414,0.062 0|0:0:1,0,0 0|0:0.698:0.425,0.451,0.123 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.949 1|1:1.607:0.052,0.289,0.659 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.836:0.34,0.484,0.176 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.167:0.175,0.482,0.342 0|0:0:1,0,0 1|0:1.148:0.182,0.487,0.33 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.072:0.214,0.499,0.286 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.496:0.063,0.378,0.559 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|0:1.127:0.191,0.492,0.317 1|1:2:0,0,1 0|0:0.085:0.915,0.084,0 0|0:0.034:0.967,0.033,0.001 1|1:1.983:0,0.017,0.983 0|0:0.079:0.924,0.072,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.438:0.578,0.406,0.016 1|0:1:0,1,0 1|0:0.571:0.512,0.406,0.083 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.008,0.103,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.912:0.298,0.492,0.21 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.717:0.021,0.241,0.738 0|0:0:1,0,0 1|1:2:0,0,1 +3 17909991 SNP-3.17908772. C A . 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C A . PASS AR2=0.925;DR2=0.949;AF=0.446 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.379:0.64,0.342,0.018 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.66:0.449,0.442,0.109 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.351:0.66,0.33,0.01 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.635:0.466,0.433,0.101 1|0:0.616:0.48,0.425,0.095 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.371:0.644,0.342,0.015 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.386:0.639,0.336,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.423:0.623,0.33,0.047 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.415:0.634,0.317,0.049 1|0:1:0,1,0 0|0:0.193:0.816,0.174,0.009 1|0:1:0,1,0 0|0:0.205:0.805,0.184,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.767,0.217,0.015 0|0:0:1,0,0 0|1:0.42:0.625,0.331,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.407:0.628,0.337,0.035 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.466:0.588,0.358,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.558:0.52,0.402,0.078 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.203:0.815,0.167,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.204:0.808,0.18,0.012 0|0:0.644:0.46,0.436,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.283:0.737,0.243,0.02 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.368:0.661,0.309,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.396:0.644,0.316,0.04 0|0:0.653:0.472,0.403,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.628:0.471,0.43,0.099 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.643:0.46,0.436,0.104 0|0:0:1,0,0 0|0:0.085:0.918,0.08,0.002 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.473:0.583,0.361,0.056 0|0:0.358:0.676,0.29,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.322:0.704,0.27,0.026 0|0:0:1,0,0 0|0:0.226:0.787,0.2,0.013 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.287:0.734,0.246,0.02 0|0:0.283:0.738,0.24,0.021 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.379:0.668,0.285,0.047 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.372:0.663,0.303,0.035 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.421:0.624,0.331,0.045 1|1:2:0,0,1 0|0:0.345:0.687,0.281,0.032 1|1:2:0,0,1 0|0:0:1,0,0 +3 17910760 SNP-3.17909541. A G . PASS AR2=0.998;DR2=0.999;AF=0.297 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.634:0,0.366,0.634 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17911107 SNP-3.17909888. C A . PASS AR2=0.994;DR2=0.995;AF=0.405 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.2:0.81,0.179,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.167:0.841,0.151,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.89,0.107,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.379:0.638,0.344,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.858,0.135,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17912986 SNP-3.17911767. A G . PASS AR2=0.981;DR2=0.984;AF=0.399 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.505:0.516,0.464,0.02 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.959:0.273,0.494,0.233 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.943:0.282,0.493,0.225 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.331:0.004,0.661,0.335 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.505:0.554,0.388,0.059 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.959:0.273,0.494,0.233 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.956:0.275,0.494,0.231 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0,0.124,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17914329 SNP-3.17913110. C A . PASS AR2=1;DR2=1;AF=0.335 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17914983 SNP-3.17913764. A G . PASS AR2=0.974;DR2=0.976;AF=0.489 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.764:0.383,0.469,0.147 1|1:2:0,0,1 1|0:1.01:0.252,0.486,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.903:0.002,0.094,0.904 0|0:0.764:0.383,0.47,0.147 0|0:0:1,0,0 1|1:1.258:0.102,0.539,0.36 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.018:0.045,0.892,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.887:0.304,0.505,0.191 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.748:0.393,0.466,0.141 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0,0.056,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.771:0.378,0.473,0.149 1|0:0.963:0.254,0.529,0.217 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.725:0.408,0.458,0.134 0|0:0:1,0,0 1|0:0.857:0.325,0.492,0.182 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0,0.083,0.917 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17918451 SNP-3.17917232. A G . PASS AR2=0.995;DR2=0.995;AF=0.271 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.776:0.011,0.202,0.787 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.814,0.177,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17920626 SNP-3.17919407. C A . PASS AR2=0.977;DR2=0.983;AF=0.297 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.502:0.04,0.418,0.542 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.695:0.022,0.262,0.716 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.666:0.024,0.285,0.69 1|1:2:0,0,1 1|1:1.539:0.05,0.361,0.589 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.856:0.007,0.131,0.863 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.853:0.008,0.131,0.861 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.442:0.059,0.439,0.501 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.791:0.006,0.196,0.797 1|1:2:0,0,1 1|1:1.711:0.016,0.256,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:1.921:0.002,0.074,0.923 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.633:0.004,0.359,0.637 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.001,0.086,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.707:0,0.292,0.707 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.321:0.088,0.503,0.409 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17925657 SNP-3.17924438. C A . PASS AR2=0.99;DR2=0.992;AF=0.348 GT:DS:GP 0|0:0.089:0.911,0.089,0 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.101,0.002 1|1:2:0,0,1 0|0:0.108:0.897,0.098,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.718,0.28,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0.007:0.993,0.007,0 1|0:0.502:0.516,0.465,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.915,0.085,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.803,0.185,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.064:0.936,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.139:0.862,0.137,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0.073:0.932,0.063,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.22:0.794,0.192,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17926056 SNP-3.17924837. C A . PASS AR2=0.979;DR2=0.985;AF=0.408 GT:DS:GP 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.025:0.241,0.493,0.266 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.085:0.915,0.084,0.001 0|0:0.029:0.972,0.028,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.411:0.61,0.369,0.021 1|1:2:0,0,1 0|0:0.369:0.647,0.337,0.016 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.051:0.95,0.05,0.001 0|0:0.368:0.656,0.321,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.02:0.98,0.02,0 1|1:1.448:0.072,0.409,0.519 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.02:0.98,0.02,0 0|0:0.256:0.749,0.247,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.221:0.779,0.22,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.361:0.639,0.361,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.953,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0.055:0.946,0.054,0.001 0|0:0.116:0.885,0.113,0.001 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.601:0.506,0.388,0.107 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17933050 SNP-3.17931831. C A . PASS AR2=0.968;DR2=0.977;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.776:0.015,0.195,0.791 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.11:0.894,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.379:0.083,0.455,0.462 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.659:0.024,0.293,0.683 1|0:1.615:0.01,0.365,0.625 1|1:2:0,0,1 1|1:1.44:0.078,0.405,0.518 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0.013,0.222,0.765 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.135:0.2,0.465,0.335 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.598:0.011,0.38,0.609 1|1:2:0,0,1 1|1:1.894:0.001,0.105,0.895 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0,0.061,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.796:0.009,0.186,0.805 1|1:1.914:0.002,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.416:0.063,0.458,0.479 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.409:0.08,0.431,0.489 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.78:0.015,0.19,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.924 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:1.802:0.012,0.173,0.815 0|0:0:1,0,0 +3 17934255 SNP-3.17933036. C A . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17936247 SNP-3.17935028ag. C A . PASS AR2=0.982;DR2=0.988;AF=0.301 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.522:0.049,0.38,0.571 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.619:0.018,0.345,0.637 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.879:0.004,0.114,0.883 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.519:0.043,0.395,0.562 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.523:0.031,0.416,0.554 1|1:1.461:0.043,0.454,0.503 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.759:0.016,0.209,0.775 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.007,0.114,0.879 1|1:1.954:0,0.046,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.68:0.025,0.269,0.705 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.002,0.057,0.942 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17936587 SNP-3.17935368. C A . PASS AR2=0.967;DR2=0.973;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.86,0.135,0.004 0|0:0.022:0.978,0.021,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.762,0.229,0.01 0|0:0.464:0.594,0.348,0.058 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.87,0.126,0.004 0|0:0.11:0.894,0.102,0.004 0|0:0.219:0.791,0.199,0.01 0|0:0.291:0.731,0.246,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.693,0.276,0.032 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0.148:0.857,0.138,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.928,0.072,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0.243:0.771,0.214,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.913,0.084,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.742,0.239,0.019 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.871,0.128,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.346:0.685,0.285,0.031 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.278:0.742,0.239,0.019 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.132:0.868,0.131,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.933,0.067,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.278:0.742,0.239,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.188:0.831,0.15,0.019 0|0:0.182:0.827,0.163,0.009 1|0:1:0,1,0 0|0:0.195:0.813,0.178,0.009 0|0:0.173:0.832,0.162,0.005 0|0:0:1,0,0 0|0:0.3:0.723,0.255,0.023 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.827,0.167,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.802,0.186,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.064:0.936,0.063,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.872,0.123,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.815,0.165,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.278:0.742,0.239,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0.265:0.753,0.23,0.017 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17936998 SNP-3.17935779. C A . PASS AR2=0.991;DR2=0.993;AF=0.293 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.739:0.018,0.224,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.755:0.363,0.519,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.447:0.081,0.391,0.528 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.978:0.001,0.021,0.978 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.769:0.013,0.204,0.782 0|0:0:1,0,0 +3 17937439 SNP-3.17936220. A G . PASS AR2=0.985;DR2=0.989;AF=0.264 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.029:0.972,0.028,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.495:0.078,0.349,0.573 0|0:0.025:0.975,0.025,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.78:0.377,0.467,0.157 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.991:0.119,0.772,0.11 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:1.347:0.138,0.378,0.484 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17937570 SNP-3.17936351. C A . PASS AR2=0.991;DR2=0.993;AF=0.366 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.001,0.054,0.945 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.365:0.675,0.286,0.039 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.931:0.001,0.067,0.932 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.934:0.001,0.063,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.002,0.061,0.937 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.128:0.878,0.116,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.2:0.807,0.187,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.392:0.628,0.352,0.02 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.841,0.153,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.06,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17937691 SNP-3.17936472. C A . PASS AR2=0.945;DR2=0.956;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.612:0.039,0.311,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.268:0.75,0.231,0.019 0|0:0:1,0,0 0|0:0.357:0.671,0.301,0.028 0|0:0.244:0.776,0.205,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.202:0.809,0.179,0.012 0|0:0:1,0,0 0|0:0.246:0.77,0.215,0.016 0|0:0.207:0.803,0.186,0.01 0|0:0:1,0,0 0|0:0.139:0.868,0.124,0.007 0|0:0:1,0,0 0|1:1.153:0.196,0.455,0.349 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.255:0.761,0.222,0.016 0|0:0.191:0.818,0.174,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.254:0.761,0.224,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.759,0.224,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.902,0.092,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.766,0.218,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.642:0.031,0.296,0.673 1|1:2:0,0,1 1|1:1.791:0.011,0.188,0.801 1|1:1.858:0.004,0.134,0.862 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.01,0.18,0.809 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.826:0.008,0.158,0.834 1|1:1.779:0.018,0.184,0.798 1|1:1.819:0.009,0.163,0.828 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.817:0.007,0.168,0.824 1|1:1.789:0.006,0.198,0.796 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.691:0.022,0.264,0.714 1|1:1.836:0.009,0.146,0.845 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.728:0.012,0.249,0.74 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.394:0.109,0.389,0.502 1|1:1.865:0.005,0.126,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.004,0.115,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.502:0.577,0.344,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.763,0.221,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.843,0.152,0.005 0|0:0:1,0,0 0|0:0.276:0.742,0.24,0.018 0|0:0.223:0.789,0.2,0.011 0|0:0.313:0.709,0.268,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.219:0.793,0.195,0.012 0|0:0.258:0.758,0.225,0.017 0|0:0.239:0.779,0.202,0.018 0|0:0:1,0,0 0|0:0.25:0.765,0.22,0.015 0|0:0.14:0.865,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.854,0.143,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17938830 SNP-3.17937611. C A . PASS AR2=0.986;DR2=0.988;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.725,0.252,0.023 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.053,0.001 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.059:0.941,0.058,0.001 0|0:0.05:0.951,0.049,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.077,0.002 0|0:0:1,0,0 0|0:0.214:0.798,0.191,0.012 0|0:0.214:0.798,0.191,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.798,0.191,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.693,0.301,0.005 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.104:0.898,0.101,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.083:0.918,0.08,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.104:0.9,0.097,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.826,0.162,0.012 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0.061:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0.05:0.951,0.047,0.002 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.074:0.93,0.065,0.004 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0.035:0.965,0.034,0 0|0:0.078:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.908,0.09,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17939626 SNP-3.17938407. A G . PASS AR2=0.974;DR2=0.98;AF=0.34 GT:DS:GP 1|1:1.811:0.001,0.188,0.812 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.258:0.107,0.529,0.365 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.52:0.584,0.313,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.15:0.105,0.64,0.255 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.794:0.001,0.204,0.795 1|1:1.902:0.001,0.096,0.903 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:1.681:0.002,0.315,0.683 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.898:0.006,0.091,0.904 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.705:0.023,0.249,0.728 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.007,0.156,0.837 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0,0.078,0.922 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.892:0.006,0.097,0.898 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.01:0.23,0.531,0.239 1|1:1.176:0.243,0.339,0.419 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.01,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.004,0.248,0.748 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.001,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.911:0,0.088,0.911 1|1:1.985:0,0.015,0.985 1|1:1.895:0.001,0.103,0.896 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.004,0.101,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.004,0.051,0.945 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17940982 SNP-3.17939763. A G . PASS AR2=0.996;DR2=0.997;AF=0.256 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.389:0.644,0.323,0.033 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.231:0.801,0.166,0.033 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17944076 SNP-3.17942857. C A . PASS AR2=0.923;DR2=0.943;AF=0.269 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.309:0.12,0.451,0.429 1|1:1.174:0.169,0.488,0.343 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.966,0.034,0 0|0:0.11:0.892,0.105,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.29:0.061,0.588,0.351 1|1:1.94:0.002,0.056,0.942 0|1:1.412:0.084,0.421,0.495 1|1:1.855:0.002,0.141,0.857 1|1:1.235:0.152,0.461,0.387 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.243:0.132,0.494,0.374 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.851:0.008,0.132,0.859 1|1:1.922:0.003,0.071,0.926 1|1:1.806:0.002,0.189,0.809 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.196:0.162,0.48,0.358 1|1:1.554:0.022,0.403,0.575 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.554:0.015,0.417,0.569 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.536:0.065,0.334,0.601 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.214:0.155,0.476,0.369 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.496:0.06,0.385,0.556 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.414:0.076,0.433,0.491 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.811:0.012,0.165,0.823 1|1:1.956:0.001,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.193:0.816,0.174,0.01 0|1:1.214:0.152,0.483,0.365 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.194:0.815,0.176,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.672:0.027,0.274,0.699 1|1:2:0,0,1 1|0:1.377:0.104,0.415,0.481 1|0:1.405:0.054,0.488,0.459 0|0:0:1,0,0 1|1:1.405:0.096,0.402,0.502 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.002,0.062,0.936 1|1:2:0,0,1 1|1:1.538:0.059,0.343,0.597 1|1:1.405:0.108,0.379,0.513 1|1:2:0,0,1 1|1:1.57:0.008,0.414,0.578 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.002,0.143,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.228:0.137,0.498,0.365 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17944679 SNP-3.17943460. C A . PASS AR2=0.981;DR2=0.987;AF=0.303 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.976,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.009,0.143,0.848 1|1:1.556:0.062,0.32,0.618 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.408:0.635,0.322,0.043 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.495:0.061,0.382,0.557 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.686:0.01,0.294,0.696 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.592:0.042,0.324,0.634 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:1.664:0.026,0.283,0.691 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.689:0.017,0.277,0.706 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.677:0.023,0.277,0.7 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17945505 SNP-3.17944286. A G . PASS AR2=0.825;DR2=0.87;AF=0.225 GT:DS:GP 0|0:0.471:0.573,0.382,0.044 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.605:0.489,0.418,0.094 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.789:0.365,0.482,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.581:0.498,0.423,0.079 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.335:0.667,0.332,0.002 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.553:0.51,0.427,0.063 0|0:0.533:0.544,0.379,0.077 0|0:0.622:0.46,0.457,0.082 0|0:0.256:0.763,0.219,0.019 0|0:0.242:0.774,0.209,0.016 0|0:0:1,0,0 0|0:0.319:0.705,0.271,0.024 1|1:2:0,0,1 0|0:0.21:0.806,0.178,0.016 0|1:1:0,1,0 0|0:0.378:0.662,0.298,0.04 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.275:0.744,0.236,0.019 0|1:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0.355:0.675,0.294,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.32:0.706,0.268,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.272:0.749,0.23,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.329:0.699,0.273,0.028 0|0:0.27:0.75,0.229,0.021 0|0:0:1,0,0 0|0:0.725:0.405,0.465,0.13 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.763:0.395,0.448,0.157 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.384:0.097,0.423,0.481 0|0:0:1,0,0 0|1:1.026:0.249,0.477,0.275 0|0:0:1,0,0 0|0:0.459:0.586,0.37,0.045 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.195:0.19,0.424,0.386 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.082:0.21,0.498,0.292 0|0:0.539:0.528,0.406,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.745:0.394,0.467,0.139 0|1:0.93:0.27,0.53,0.2 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.781:0.379,0.461,0.16 0|0:0:1,0,0 1|0:0.904:0.279,0.539,0.182 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.791:0.366,0.478,0.157 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.772:0.392,0.445,0.163 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.837,0.151,0.012 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.637:0.464,0.435,0.101 1|0:0.882:0.315,0.489,0.196 1|1:2:0,0,1 0|0:0.279:0.741,0.238,0.021 0|0:0.659:0.45,0.44,0.109 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.272:0.748,0.231,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.616:0.464,0.457,0.079 0|0:0:1,0,0 0|0:0.511:0.575,0.339,0.086 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.289:0.733,0.245,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.7:0.391,0.519,0.091 0|1:1:0,1,0 0|0:0.307:0.694,0.305,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.676:0.439,0.445,0.116 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.497:0.571,0.361,0.068 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.711:0.417,0.454,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.734,0.244,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.787:0.374,0.464,0.161 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.596:0.495,0.415,0.091 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.269:0.751,0.229,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.417:0.611,0.36,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.272:0.749,0.23,0.021 +3 17947981 SNP-3.17946762. C A . PASS AR2=0.999;DR2=0.999;AF=0.415 GT:DS:GP 1|0:0.844:0.156,0.843,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.939,0.061,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17948270 SNP-3.17947051. C A . PASS AR2=0.997;DR2=0.997;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.895:0.346,0.413,0.241 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17948702 SNP-3.17947483. C A . PASS AR2=0.986;DR2=0.993;AF=0.364 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.65:0.452,0.445,0.103 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.869:0.4,0.331,0.269 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.582:0.504,0.41,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17952951 SNP-3.17951732. A G . PASS AR2=1;DR2=1;AF=0.22 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 17953359 SNP-3.17952140. A G . PASS AR2=0.996;DR2=0.996;AF=0.355 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0.001,0.024,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:1.921:0.001,0.077,0.922 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.938 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.707:0.005,0.283,0.712 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.003,0.072,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17954034 SNP-3.17952815. A G . PASS AR2=0.994;DR2=0.995;AF=0.23 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.09:0.054,0.802,0.144 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.002,0.061,0.937 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.001,0.076,0.923 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.036,0.962 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.885:0.003,0.109,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.898:0.003,0.097,0.9 1|1:1.847:0.008,0.138,0.854 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.891:0.12,0.869,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.921:0.002,0.075,0.923 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17956417 SNP-3.17955198. C A . PASS AR2=0.993;DR2=0.994;AF=0.33 GT:DS:GP 0|0:0.039:0.961,0.038,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.997:0.229,0.545,0.226 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.096,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.092:0.908,0.092,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.911:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.003,0.194,0.803 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.001,0.083,0.916 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.002,0.088,0.91 0|0:0:1,0,0 +3 17958188 SNP-3.17956969. C A . PASS AR2=0.917;DR2=0.939;AF=0.408 GT:DS:GP 0|0:0.379:0.659,0.304,0.037 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.143:0.858,0.141,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.806:0.37,0.454,0.176 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.335:0.67,0.325,0.005 0|0:0.362:0.64,0.358,0.002 0|0:0:1,0,0 0|1:0.69:0.434,0.443,0.123 0|0:0.436:0.61,0.343,0.047 0|0:0:1,0,0 0|0:0.42:0.626,0.329,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.408:0.637,0.318,0.045 0|0:0.474:0.58,0.365,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.426:0.623,0.328,0.049 0|0:0.506:0.554,0.386,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.717,0.257,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.698,0.279,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.376:0.66,0.304,0.036 0|0:0:1,0,0 0|0:0.311:0.711,0.267,0.022 0|0:0.477:0.579,0.365,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.461:0.642,0.255,0.103 1|1:2:0,0,1 1|0:0.505:0.553,0.388,0.058 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.495:0.632,0.24,0.128 1|1:2:0,0,1 1|1:1.753:0.021,0.205,0.774 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.534:0.549,0.368,0.083 1|1:2:0,0,1 0|0:0.308:0.721,0.251,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.301:0.712,0.276,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.458:0.599,0.344,0.057 0|0:0:1,0,0 1|0:0.546:0.505,0.443,0.051 0|0:0.096:0.907,0.09,0.003 0|0:0.341:0.69,0.279,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0.298:0.728,0.247,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.264:0.755,0.225,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.365:0.669,0.298,0.033 0|0:0:1,0,0 0|0:0.266:0.735,0.264,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.843,0.149,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.389:0.65,0.311,0.039 0|0:0.339:0.689,0.283,0.028 0|0:0.391:0.659,0.292,0.05 1|1:2:0,0,1 0|0:0.096:0.907,0.09,0.003 0|0:0.151:0.857,0.136,0.008 0|0:0.295:0.727,0.251,0.022 0|0:0.333:0.697,0.273,0.03 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.096:0.907,0.09,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.532:0.547,0.374,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.642:0.465,0.428,0.107 0|0:0.248:0.771,0.211,0.018 0|0:0.362:0.671,0.296,0.033 0|0:0.384:0.66,0.295,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.414:0.606,0.374,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.375:0.66,0.304,0.036 +3 17963359 SNP-3.17962140. C A . PASS AR2=0.988;DR2=0.99;AF=0.316 GT:DS:GP 0|0:0:1,0,0 1|1:1.818:0.007,0.169,0.825 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.846:0.006,0.141,0.853 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.024:0.976,0.024,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.856,0.136,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.004,0.121,0.876 1|1:2:0,0,1 1|1:1.817:0.009,0.165,0.826 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.716:0.044,0.196,0.76 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.869:0.004,0.123,0.873 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.794:0.014,0.179,0.808 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.887,0.112,0.001 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.007,0.146,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.8:0.011,0.178,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.861:0.005,0.128,0.866 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:1.913:0,0.086,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17964765 SNP-3.17963546. A G . PASS AR2=0.965;DR2=0.974;AF=0.42 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.135:0.869,0.128,0.004 0|0:0:1,0,0 0|0:0.151:0.854,0.141,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.25:0.77,0.209,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.331:0.706,0.257,0.037 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0,0.054,0.945 1|0:1:0,1,0 0|0:0.758:0.45,0.342,0.208 1|1:1.934:0.005,0.055,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.013,0.238,0.749 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.006,0.189,0.805 1|1:1.851:0.006,0.137,0.857 1|1:2:0,0,1 1|1:1.956:0,0.043,0.957 1|1:1.588:0.059,0.294,0.647 1|1:1.672:0.003,0.322,0.675 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.939:0.001,0.058,0.94 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.618:0.018,0.346,0.636 1|1:2:0,0,1 1|1:1.784:0.012,0.192,0.796 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.696:0.031,0.242,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.445:0.06,0.435,0.505 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.956,0.043,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.419:0.629,0.324,0.048 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.007,0.181,0.813 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.822,0.169,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.001,0.076,0.923 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.113:0.89,0.107,0.003 0|0:0.193:0.817,0.173,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.874:0.004,0.119,0.878 1|1:1.956:0,0.044,0.956 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.949 1|1:1.933:0.001,0.066,0.934 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.146,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.779:0.014,0.193,0.793 1|1:2:0,0,1 1|1:1.865:0.009,0.117,0.874 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 +3 17966864 SNP-3.17965645. A G . PASS AR2=1;DR2=1;AF=0.237 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17966914 SNP-3.17965695. C A . PASS AR2=0.994;DR2=0.995;AF=0.338 GT:DS:GP 0|0:0:1,0,0 1|1:1.937:0,0.063,0.937 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0.133:0.868,0.131,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.083:0.918,0.081,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.876,0.116,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0,0.045,0.955 0|0:0:1,0,0 1|1:1.964:0,0.035,0.965 1|1:1.684:0.029,0.258,0.713 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.966 1|1:1.978:0.001,0.021,0.978 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0,0.055,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0.001,0.026,0.973 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 +3 17967272 SNP-3.17966053. A G . PASS AR2=0.988;DR2=0.99;AF=0.226 GT:DS:GP 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.784:0.004,0.207,0.789 1|1:1.823:0.01,0.156,0.834 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.003,0.083,0.914 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.847:0.153,0.847,0 1|1:1.643:0.04,0.277,0.683 1|1:1.871:0.008,0.113,0.879 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.756:0.017,0.211,0.772 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.79:0.011,0.188,0.801 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 +3 17970951 SNP-3.17969732. A G . PASS AR2=1;DR2=1;AF=0.418 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17971628 SNP-3.17970409. A G . PASS AR2=0.932;DR2=0.951;AF=0.543 GT:DS:GP 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.63:0.125,0.121,0.754 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.618:0.478,0.426,0.096 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.382:0.676,0.267,0.057 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|0:1.457:0.068,0.407,0.525 1|1:1.89:0.001,0.108,0.891 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.788:0.014,0.185,0.801 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.651:0.031,0.288,0.682 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.018,0.244,0.738 1|1:2:0,0,1 1|1:1.935:0.002,0.061,0.937 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.795:0.008,0.19,0.802 1|1:2:0,0,1 1|1:1.765:0.007,0.222,0.772 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.003,0.161,0.837 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:1.629:0.037,0.297,0.666 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.928:0.002,0.067,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.425:0.083,0.409,0.508 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.551:0.04,0.368,0.592 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.619:0.042,0.297,0.661 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.425:0.083,0.409,0.508 0|0:0:1,0,0 1|1:1.728:0.018,0.237,0.745 0|0:0:1,0,0 1|1:1.411:0.051,0.487,0.462 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.529:0.536,0.399,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.284:0.738,0.24,0.022 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.284:0.738,0.24,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:1.831:0.008,0.154,0.839 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.652:0.031,0.287,0.682 0|0:0:1,0,0 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 1|1:1.754:0.015,0.216,0.769 1|1:1.515:0.053,0.379,0.568 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.502:0.067,0.365,0.568 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.532:0.053,0.362,0.585 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.019:0.29,0.401,0.309 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.008,0.157,0.835 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.738,0.24,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.741:0.017,0.226,0.758 1|1:1.662:0.029,0.281,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.662:0.029,0.281,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.649:0.031,0.289,0.68 1|1:2:0,0,1 1|1:1.425:0.083,0.409,0.508 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.005,0.055,0.94 1|1:2:0,0,1 1|1:1.927:0.005,0.064,0.932 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17972515 SNP-3.17971296. C A . PASS AR2=0.961;DR2=0.968;AF=0.264 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.716:0.016,0.253,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.806:0.354,0.486,0.16 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.309:0.72,0.25,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.871:0.318,0.493,0.189 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.002,0.082,0.916 1|1:1.875:0.004,0.118,0.878 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.191:0.088,0.633,0.279 0|0:0:1,0,0 1|0:1.505:0.042,0.411,0.547 0|1:1.135:0.22,0.424,0.356 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.004,0.131,0.864 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.42:0.027,0.526,0.447 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.722:0.323,0.632,0.045 1|0:1:0,1,0 1|0:1.207:0.19,0.412,0.398 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.015,0.213,0.772 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.237:0.108,0.547,0.345 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.861:0.003,0.132,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.442:0.087,0.384,0.529 1|1:1.98:0,0.02,0.98 0|0:0.716:0.415,0.454,0.131 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17972810 SNP-3.17971591. C A . PASS AR2=0.992;DR2=0.994;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0.068:0.932,0.067,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.626:0.033,0.309,0.658 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.853:0.005,0.136,0.858 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.918:0.002,0.079,0.919 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.849:0.002,0.147,0.851 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.011,0.181,0.808 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0.173:0.828,0.171,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.002,0.05,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17973107 SNP-3.17971888. C A . PASS AR2=0.991;DR2=0.992;AF=0.321 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.827:0.007,0.158,0.835 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.054:0.218,0.51,0.272 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.852:0.007,0.134,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.781:0.024,0.17,0.805 1|1:1.883:0.001,0.115,0.884 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.001,0.151,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.687:0.023,0.268,0.709 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.005,0.125,0.871 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17976158 SNP-3.17974939. A G . PASS AR2=0.956;DR2=0.966;AF=0.404 GT:DS:GP 1|1:1.612:0.04,0.309,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.825,0.17,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.415:0.627,0.331,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.279:0.751,0.219,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.493:0.009,0.488,0.503 1|1:2:0,0,1 0|1:0.985:0.22,0.576,0.205 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.328:0.037,0.598,0.365 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.689:0.028,0.255,0.717 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.641:0.034,0.291,0.675 1|1:2:0,0,1 1|1:1.727:0.02,0.233,0.747 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.701:0.011,0.277,0.712 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.372:0.669,0.29,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.857,0.137,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.009,0.186,0.805 0|0:0:1,0,0 0|0:0.247:0.771,0.211,0.018 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.296:0.724,0.257,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.844,0.153,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.194:0.814,0.178,0.008 0|0:0.248:0.77,0.212,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.903:0.005,0.087,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.002,0.124,0.874 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.725,0.272,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.404:0.636,0.324,0.04 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.091:0.177,0.556,0.267 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.659:0.025,0.291,0.684 1|1:2:0,0,1 1|1:1.718:0.02,0.241,0.738 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.74:0.015,0.231,0.755 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.445:0.605,0.345,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.97:0.001,0.028,0.971 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.39:0.062,0.486,0.452 1|1:2:0,0,1 1|1:1.969:0.001,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.075:0.266,0.392,0.341 +3 17976415 SNP-3.17975196. C A . PASS AR2=0.988;DR2=0.99;AF=0.382 GT:DS:GP 0|0:0.108:0.895,0.101,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.282:0.737,0.245,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.891,0.105,0.004 0|0:0.171:0.836,0.156,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.841,0.151,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.842,0.149,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.816,0.176,0.008 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.117:0.887,0.108,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.833,0.161,0.006 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.836,0.156,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.408:0.619,0.354,0.027 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17977120 SNP-3.17975901. A G . PASS AR2=1;DR2=1;AF=0.235 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.943:0.058,0.942,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17980378 SNP-3.17979159. A G . PASS AR2=0.974;DR2=0.98;AF=0.382 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.862,0.137,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.688:0.024,0.263,0.713 1|1:2:0,0,1 1|0:1.65:0.029,0.292,0.679 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.615:0.039,0.306,0.655 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.7:0.017,0.266,0.717 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.01,0.17,0.819 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0.001,0.025,0.975 0|0:0.032:0.968,0.032,0 1|1:1.689:0.022,0.267,0.711 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.588:0.043,0.327,0.631 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.493:0.056,0.395,0.549 1|1:2:0,0,1 1|1:1.784:0.013,0.189,0.798 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.973:0.001,0.025,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.003,0.107,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0.001,0.025,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.585:0.043,0.329,0.628 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.768:0.017,0.198,0.785 1|0:1:0,1,0 1|1:1.761:0.013,0.212,0.775 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0.001,0.03,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.868:0.005,0.123,0.873 1|1:1.869:0.004,0.122,0.873 1|1:1.84:0.009,0.142,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.07,0.928 1|1:1.869:0.004,0.122,0.873 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.825:0.012,0.152,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.799:0.014,0.174,0.813 +3 17982733 SNP-3.17981514. C A . PASS AR2=0.989;DR2=0.991;AF=0.388 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.322:0.678,0.322,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.022,0.259,0.719 1|1:1.837:0.017,0.129,0.854 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.818:0.003,0.175,0.821 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.753:0.012,0.223,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.748:0.008,0.237,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.002,0.044,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.786:0,0.214,0.786 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0,0.066,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.019,0.236,0.745 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.025,0.113,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 +3 17982916 SNP-3.17981697. A G . PASS AR2=0.994;DR2=0.995;AF=0.42 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.05:0.95,0.049,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.931,0.069,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.836,0.143,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.907:0.002,0.089,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.676:0.015,0.294,0.691 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.002 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 1|1:1.898:0.002,0.098,0.9 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17982990 SNP-3.17981771. C A . PASS AR2=0.986;DR2=0.99;AF=0.282 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.379:0.054,0.514,0.433 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.904:0.004,0.089,0.907 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.64:0.033,0.294,0.673 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.734:0.02,0.227,0.753 0|0:0:1,0,0 1|1:1.771:0.015,0.199,0.786 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.245:0.049,0.658,0.293 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.005,0.113,0.882 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.573:0.056,0.316,0.628 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 17983222 SNP-3.17982003. C A . 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A G . 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C A . PASS AR2=0.999;DR2=0.999;AF=0.345 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.065:0.936,0.064,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17984801 SNP-3.17983582. C A . PASS AR2=0.953;DR2=0.964;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.313:0.712,0.264,0.025 0|0:0:1,0,0 0|0:0.314:0.71,0.265,0.025 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.379:0.66,0.301,0.039 0|0:0.203:0.826,0.145,0.029 0|0:0.316:0.709,0.266,0.025 0|0:0.27:0.747,0.235,0.018 0|0:0.27:0.748,0.235,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.314:0.711,0.265,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.711,0.264,0.025 0|0:0:1,0,0 0|0:0.314:0.71,0.265,0.025 0|0:0:1,0,0 0|0:0.314:0.71,0.265,0.025 0|0:0.314:0.71,0.265,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.711,0.264,0.025 0|0:0.32:0.706,0.269,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.289:0.732,0.248,0.021 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.314:0.71,0.265,0.025 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.329:0.698,0.274,0.027 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.314:0.71,0.265,0.025 0|0:0.282:0.738,0.243,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.294:0.728,0.25,0.022 0|0:0.314:0.71,0.265,0.025 0|0:0.317:0.708,0.267,0.025 0|1:1:0,1,0 0|0:0.314:0.71,0.265,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.646,0.307,0.047 0|0:0.314:0.711,0.265,0.025 0|0:0:1,0,0 0|0:0.313:0.711,0.264,0.025 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.314:0.71,0.265,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.317:0.708,0.266,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.329:0.698,0.274,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.329:0.698,0.274,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17985314 SNP-3.17984095. A G . PASS AR2=1;DR2=1;AF=0.416 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17987234 SNP-3.17986015. A G . PASS AR2=0.991;DR2=0.992;AF=0.242 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.093:0.909,0.089,0.002 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.909,0.089,0.002 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.002 0|0:0.094:0.908,0.089,0.002 0|0:0.094:0.908,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.948:0,0.051,0.949 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.994:0.006,0.993,0 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.001:0.008,0.982,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.002 0|0:0.081:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17992019 SNP-3.17990800. A G . PASS AR2=1;DR2=1;AF=0.232 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17992271 SNP-3.17991052. A G . PASS AR2=0.998;DR2=0.999;AF=0.416 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.587:0,0.412,0.588 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 17993746 SNP-3.17992527. A G . PASS AR2=1;DR2=1;AF=0.233 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 17994360 SNP-3.17993141. C A . PASS AR2=0.998;DR2=0.999;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.95,0.048,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 17998130 SNP-3.17996911. C A . PASS AR2=1;DR2=1;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18001028 SNP-3.17999809. C A . PASS AR2=0.997;DR2=0.998;AF=0.248 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.299:0.751,0.198,0.051 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18001240 SNP-3.18000021. C A . PASS AR2=0.994;DR2=0.994;AF=0.486 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.016,0.212,0.773 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.015,0.2,0.785 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.87:0.003,0.123,0.873 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.702:0.026,0.246,0.728 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.916:0.317,0.45,0.233 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 18001843 SNP-3.18000624. C A . PASS AR2=0.992;DR2=0.994;AF=0.365 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.846,0.147,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.765,0.221,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.07,0.93 0|0:0.27:0.741,0.249,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.224:0.789,0.197,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.846,0.147,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.816,0.174,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18002512 SNP-3.18001293. C A . PASS AR2=0.996;DR2=0.996;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0.113:0.891,0.105,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0.227:0.789,0.194,0.017 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.242:0.773,0.212,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18004541 SNP-3.18003322. A G . PASS AR2=0.954;DR2=0.965;AF=0.426 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.577:0.048,0.326,0.625 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.623:0.033,0.311,0.656 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.875,0.118,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.617:0.037,0.309,0.654 0|0:0:1,0,0 1|1:1.62:0.037,0.307,0.656 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.724:0.053,0.169,0.777 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.353:0.019,0.608,0.372 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.576:0.049,0.327,0.625 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.563:0.051,0.334,0.615 1|1:1.686:0.025,0.263,0.712 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.047,0.325,0.627 1|0:1.594:0.044,0.319,0.638 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.609:0.038,0.316,0.647 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.576:0.049,0.327,0.625 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.761:0.015,0.209,0.776 1|1:2:0,0,1 1|1:1.794:0.02,0.166,0.814 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.782:0.015,0.188,0.797 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.659:0.028,0.284,0.688 0|0:0:1,0,0 1|1:1.64:0.034,0.293,0.674 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.782:0.012,0.194,0.794 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.67:0.029,0.273,0.698 0|0:0:1,0,0 1|1:1.576:0.049,0.327,0.625 0|0:0:1,0,0 1|1:1.617:0.037,0.309,0.654 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.617:0.037,0.309,0.654 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.62:0.037,0.307,0.656 0|0:0:1,0,0 1|0:0.88:0.33,0.46,0.21 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.811:0.013,0.164,0.823 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18005201 SNP-3.18003982. C A . 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A G . PASS AR2=0.967;DR2=0.975;AF=0.297 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|0:1.009:0,0.991,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.953,0.044,0.003 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.233:0.777,0.214,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.114:0.894,0.098,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.894,0.103,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.004,0.046,0.95 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.533:0.073,0.32,0.607 0|0:0:1,0,0 0|0:0.235:0.765,0.235,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.639:0.037,0.288,0.675 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.53:0.087,0.296,0.617 1|1:1.65:0.038,0.275,0.687 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.617:0.044,0.294,0.662 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.573:0.056,0.315,0.629 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.004,0.093,0.903 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.636:0.039,0.285,0.676 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.859,0.137,0.004 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.637:0.039,0.284,0.676 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.101:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.343:0.104,0.449,0.447 1|1:1.57:0.076,0.278,0.646 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.095,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.644:0.038,0.279,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.06,0.002 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18006612 SNP-3.18005393. C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18007453 SNP-3.18006234. A G . PASS AR2=0.961;DR2=0.966;AF=0.339 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:1.779:0.046,0.129,0.825 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.402:0.632,0.335,0.033 1|1:1.882:0,0.118,0.882 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.33:0.1,0.47,0.43 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.058:0.222,0.497,0.28 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.096:0.205,0.493,0.302 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.121:0.193,0.493,0.314 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.158:0.179,0.484,0.337 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.129:0.189,0.492,0.318 0|0:0:1,0,0 0|1:1.175:0.169,0.487,0.344 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.157:0.18,0.484,0.336 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0,0.071,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.25:0.137,0.476,0.387 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.09:0.208,0.494,0.298 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.158:0.174,0.495,0.332 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.262:0.144,0.45,0.406 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.109:0.198,0.494,0.307 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.346:0.135,0.384,0.481 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18007753 SNP-3.18006534. A G . PASS AR2=1;DR2=1;AF=0.226 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18008086 SNP-3.18006867. C A . PASS AR2=0.999;DR2=0.999;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.969:0.031,0.969,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18008186 SNP-3.18006967. C A . PASS AR2=0.985;DR2=0.988;AF=0.31 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.692:0.025,0.259,0.717 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.903:0.097,0.903,0 1|1:2:0,0,1 1|1:1.696:0.024,0.256,0.72 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.711:0.021,0.248,0.731 1|1:1.695:0.024,0.257,0.719 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.692:0.025,0.259,0.717 1|1:1.727:0.019,0.234,0.747 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.745:0.018,0.22,0.763 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.009,0.184,0.806 1|1:1.745:0.018,0.22,0.763 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.014,0.172,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18009334 SNP-3.18008115. C A . PASS AR2=0.976;DR2=0.98;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.453:0.61,0.326,0.064 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.719:0.411,0.46,0.13 1|0:0.716:0.413,0.459,0.129 0|0:0.719:0.411,0.46,0.13 0|0:0:1,0,0 0|0:0.719:0.411,0.46,0.13 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.719:0.411,0.46,0.13 0|1:0.719:0.41,0.46,0.13 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.719:0.411,0.46,0.13 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.718:0.411,0.459,0.129 1|0:0.823:0.337,0.504,0.159 1|1:2:0,0,1 0|0:0:1,0,0 +3 18010017 SNP-3.18008798. C A . PASS AR2=0.994;DR2=0.995;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.718,0.258,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.393:0.607,0.393,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.913,0.087,0 1|0:1:0,1,0 0|0:0.089:0.911,0.089,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.096:0.908,0.088,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.238:0.776,0.21,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18010363 SNP-3.18009144. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18010609 SNP-3.18009390. A G . PASS AR2=1;DR2=1;AF=0.224 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18010730 SNP-3.18009511. C A . PASS AR2=0.998;DR2=0.999;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.833,0.156,0.011 0|0:0.163:0.847,0.143,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18011285 SNP-3.18010066. C A . PASS AR2=0.973;DR2=0.982;AF=0.404 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.046:0.386,0.182,0.432 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.104:0.196,0.504,0.3 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.53:0.503,0.463,0.034 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|0:1.409:0,0.591,0.409 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.01:0.99,0.01,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.064:0,0.936,0.064 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.957,0.041,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.963:0.27,0.498,0.232 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.792,0.208,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.693:0.321,0.665,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.898:0.307,0.489,0.204 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.238:0.776,0.21,0.014 0|0:0:1,0,0 0|0:0.585:0.502,0.41,0.087 1|1:2:0,0,1 0|0:0:1,0,0 +3 18012005 SNP-3.18010786. C A . PASS AR2=0.992;DR2=0.994;AF=0.382 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.642:0.076,0.207,0.718 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.001,0.085,0.915 1|1:1.906:0,0.093,0.907 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0.001,0.033,0.967 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0.001,0.027,0.973 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.976:0.024,0.976,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.377:0.623,0.377,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.002,0.047,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0.001,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.974:0.001,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0.001,0.027,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0.001,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 18012176 SNP-3.18010957. A G . PASS AR2=0.998;DR2=0.999;AF=0.212 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.76:0.015,0.211,0.775 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18012537 SNP-3.18011318. A G . PASS AR2=0.992;DR2=0.992;AF=0.292 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0.119:0.884,0.113,0.003 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0.118:0.885,0.111,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.092:0.91,0.089,0.001 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0.118:0.885,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.921:0.082,0.914,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.885,0.111,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0,0.041,0.959 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.911,0.088,0.001 0|0:0:1,0,0 0|0:0.118:0.885,0.111,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.886,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.002,0.071,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.003,0.072,0.924 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18013199 SNP-3.18011980. A G . PASS AR2=1;DR2=1;AF=0.379 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18014557 SNP-3.18013338. C A . PASS AR2=1;DR2=1;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18015174 SNP-3.18013955. A G . PASS AR2=0.999;DR2=0.999;AF=0.251 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.065,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.075:0.925,0.075,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18017113 SNP-3.18015894. A G . PASS AR2=1;DR2=1;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18018195 SNP-3.18016976. A G . PASS AR2=1;DR2=1;AF=0.235 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18018315 SNP-3.18017096. A G . PASS AR2=0.999;DR2=0.999;AF=0.238 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18018917 SNP-3.18017698. A G . PASS AR2=1;DR2=1;AF=0.212 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18019947 SNP-3.18018728. C A . PASS AR2=0.978;DR2=0.983;AF=0.338 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.285:0.736,0.244,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.8,0.2,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.297:0.725,0.254,0.022 0|0:0.285:0.736,0.244,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.005,0.145,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0,0.174,0.825 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.725,0.254,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.742,0.239,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.272:0.747,0.235,0.019 0|0:0.272:0.747,0.235,0.019 0|0:0.272:0.747,0.235,0.019 0|0:0:1,0,0 0|0:0.272:0.747,0.235,0.019 0|0:0:1,0,0 0|0:0.272:0.747,0.235,0.019 0|0:0.272:0.747,0.235,0.019 0|0:0.272:0.747,0.235,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.272:0.747,0.235,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.285:0.736,0.244,0.02 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18020149 SNP-3.18018930. C A . PASS AR2=1;DR2=1;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18022146 SNP-3.18020927. C A . PASS AR2=0.943;DR2=0.955;AF=0.405 GT:DS:GP 1|1:1.494:0.061,0.385,0.554 1|1:1.925:0,0.075,0.925 0|0:0:1,0,0 1|1:1.837:0.016,0.131,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.771:0.014,0.202,0.784 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.012,0.147,0.842 0|1:1.069:0.19,0.551,0.259 0|1:1.405:0.042,0.512,0.447 1|1:2:0,0,1 0|1:0.874:0.241,0.644,0.115 0|1:0.933:0.211,0.645,0.144 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.667,0.291,0.042 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.988:0.052,0.908,0.04 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.852:0.191,0.765,0.043 0|1:1.093:0.162,0.583,0.255 0|1:0.802:0.209,0.779,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.581:0.025,0.369,0.606 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:1.702:0.021,0.256,0.723 1|0:0.643:0.43,0.497,0.073 1|1:2:0,0,1 1|0:1.369:0.101,0.429,0.47 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.74:0.306,0.647,0.047 0|0:0:1,0,0 1|1:1.711:0.029,0.23,0.74 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.276:0.136,0.452,0.412 1|1:1.943:0.002,0.052,0.946 0|0:0:1,0,0 1|1:1.858:0.015,0.113,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.011:0.024,0.94,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.19:0.104,0.602,0.294 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.528:0.033,0.405,0.561 1|1:1.697:0.025,0.253,0.722 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.418:0.026,0.53,0.444 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.069:0.121,0.688,0.191 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.008:0.259,0.474,0.267 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.012,0.173,0.815 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.308:0.001,0.689,0.31 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.08:0.091,0.738,0.171 0|0:0.396:0.649,0.305,0.046 1|1:2:0,0,1 1|0:1.305:0.118,0.459,0.423 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.006,0.231,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.618:0.043,0.296,0.661 +3 18022434 SNP-3.18021215. A G . PASS AR2=1;DR2=1;AF=0.317 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18023297 SNP-3.18022078. A G . PASS AR2=1;DR2=1;AF=0.233 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18023858 SNP-3.18022639. A G . PASS AR2=0.997;DR2=0.998;AF=0.238 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:1.955:0,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.313:0.688,0.311,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18024093 SNP-3.18022874. C A . PASS AR2=1;DR2=1;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0.011:0.989,0.011,0 1|1:1.954:0,0.046,0.954 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18027733 SNP-3.18026514. C A . PASS AR2=0.996;DR2=0.997;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.893,0.1,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.837,0.155,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.18:0.829,0.162,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.854,0.135,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18027874 SNP-3.18026655. A G . PASS AR2=1;DR2=1;AF=0.235 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18030683 SNP-3.18029464. A G . PASS AR2=0.928;DR2=0.949;AF=0.273 GT:DS:GP 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.501:0.584,0.332,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0.164:0.843,0.151,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 1|1:1.79:0.021,0.167,0.812 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.115:0.262,0.361,0.377 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.498:0.065,0.371,0.564 0|1:1.203:0.142,0.513,0.345 1|0:1.474:0.065,0.396,0.539 1|1:1.802:0.006,0.185,0.809 1|1:2:0,0,1 1|1:1.616:0.035,0.315,0.651 0|1:1.417:0.08,0.422,0.497 1|1:1.522:0.054,0.369,0.577 0|0:0.028:0.972,0.028,0 1|0:1.209:0.136,0.52,0.344 1|1:2:0,0,1 0|1:1.537:0.048,0.367,0.585 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.099:0.905,0.091,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 1|1:1.501:0.065,0.368,0.567 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.622:0.008,0.361,0.63 0|1:1.341:0.101,0.456,0.443 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.469:0.06,0.411,0.529 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.694:0.019,0.268,0.713 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.049:0.952,0.046,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.757:0.03,0.182,0.787 1|1:2:0,0,1 1|1:1.87:0.005,0.121,0.874 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.805:0.009,0.176,0.815 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 0|1:1:0,1,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.628:0.03,0.311,0.659 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.859:0.004,0.132,0.864 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.174:0.251,0.324,0.425 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18035945 SNP-3.18034726. A G . PASS AR2=0.995;DR2=0.995;AF=0.254 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.877,0.118,0.005 0|0:0.098:0.904,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.993:0,0.007,0.993 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.937,0.062,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.841:0,0.159,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.093,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18037971 SNP-3.18036752. A G . PASS AR2=0.979;DR2=0.984;AF=0.293 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.484:0.118,0.279,0.602 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.734,0.249,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.842,0.149,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.194:0.127,0.553,0.32 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:0.509:0.506,0.478,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.843,0.148,0.009 0|0:0.126:0.879,0.116,0.005 0|0:0.172:0.836,0.156,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.679:0.054,0.213,0.733 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.275:0.748,0.229,0.023 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.154:0.853,0.14,0.007 0|0:0.142:0.864,0.13,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18038175 SNP-3.18036956. A G . PASS AR2=0.986;DR2=0.988;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0.001 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.743:0.008,0.241,0.751 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.819,0.181,0 0|0:0.126:0.881,0.112,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.369:0.636,0.359,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:1.908:0.002,0.088,0.91 1|1:1.908:0.002,0.088,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 18040460 SNP-3.18039241. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18041701 SNP-3.18040482. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18041916 SNP-3.18040697. C A . PASS AR2=1;DR2=1;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18042800 SNP-3.18041581. C A . PASS AR2=0.999;DR2=0.999;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.906:0.099,0.897,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.896:0.107,0.89,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18043099 SNP-3.18041880. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18043844 SNP-3.18042625. C A . PASS AR2=0.991;DR2=0.992;AF=0.324 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.916:0.004,0.076,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.082,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.826:0.009,0.156,0.835 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.008,0.191,0.801 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.754:0.015,0.216,0.769 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.828:0.008,0.155,0.836 0|1:1:0,1,0 0|0:0.165:0.838,0.159,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:1.928:0.004,0.065,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.892:0.002,0.104,0.894 1|1:1.882:0.001,0.115,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.348:0.685,0.281,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18043944 SNP-3.18042725. A G . PASS AR2=0.989;DR2=0.99;AF=0.225 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.841:0.006,0.146,0.848 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:1.841:0.006,0.146,0.848 1|1:2:0,0,1 1|1:1.841:0.006,0.146,0.848 1|1:1.841:0.006,0.146,0.848 0|0:0.049:0.952,0.047,0.001 1|1:1.841:0.006,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.841:0.006,0.146,0.848 1|1:2:0,0,1 1|1:1.841:0.006,0.146,0.848 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.076,0.001 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.006,0.146,0.848 1|1:1.841:0.006,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.841:0.006,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18044408 SNP-3.18043189. C A . PASS AR2=0.933;DR2=0.934;AF=0.452 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.003:0.997,0.003,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.003:0.249,0.5,0.252 1|0:1.002:0.249,0.5,0.251 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.002:0.249,0.5,0.251 0|1:1:0,1,0 1|1:0.979:0.261,0.499,0.24 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.381:0.671,0.276,0.053 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.002:0.249,0.5,0.251 0|1:1.002:0.249,0.5,0.251 0|1:1.002:0.249,0.5,0.251 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.903,0.097,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0,0.175,0.825 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.002:0.249,0.5,0.251 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.002:0.249,0.5,0.251 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.002:0.249,0.5,0.251 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1.002:0.249,0.5,0.251 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.002:0.249,0.5,0.251 0|0:0:1,0,0 1|0:1.002:0.249,0.5,0.251 1|1:1.002:0.249,0.5,0.251 0|1:1:0,1,0 1|0:1.002:0.249,0.5,0.251 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.002:0.249,0.5,0.251 1|1:2:0,0,1 0|0:0.81:0.389,0.413,0.199 0|1:1.002:0.249,0.5,0.251 1|0:1.002:0.249,0.5,0.251 0|0:0:1,0,0 1|0:1.002:0.249,0.5,0.251 0|1:1.002:0.249,0.5,0.251 0|0:0:1,0,0 1|1:1.002:0.249,0.5,0.251 0|1:1.002:0.249,0.5,0.251 0|1:1.002:0.249,0.5,0.251 1|1:1.002:0.249,0.5,0.251 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.002:0.249,0.5,0.251 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18044523 SNP-3.18043304. A G . PASS AR2=1;DR2=1;AF=0.23 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18044759 SNP-3.18043540. A G . PASS AR2=0.998;DR2=0.998;AF=0.331 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.008,0.132,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18044873 SNP-3.18043654. A G . PASS AR2=0.993;DR2=0.995;AF=0.305 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.007,0.109,0.884 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.677:0.004,0.315,0.681 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.944 1|1:1.871:0.003,0.123,0.874 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.001,0.073,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.512:0.013,0.462,0.525 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:1.934:0,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18045182 SNP-3.18043963. A G . PASS AR2=0.988;DR2=0.989;AF=0.224 GT:DS:GP 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.835:0.007,0.151,0.842 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.013,0.19,0.796 1|1:2:0,0,1 1|1:1.855:0.005,0.135,0.86 1|1:1.842:0.006,0.145,0.849 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.82:0.008,0.164,0.828 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.843:0.006,0.145,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.832:0.007,0.154,0.839 1|1:2:0,0,1 1|1:1.846:0.006,0.141,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.843:0.157,0.843,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.842:0.006,0.146,0.848 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.876:0.005,0.115,0.88 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18046030 SNP-3.18044811. C A . PASS AR2=0.989;DR2=0.991;AF=0.326 GT:DS:GP 0|0:0:1,0,0 1|1:1.943:0.001,0.056,0.944 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:1.873:0.01,0.108,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.004,0.127,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 1|1:1.935:0.002,0.061,0.937 1|1:1.93:0.003,0.064,0.933 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.001,0.085,0.914 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.946 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.015,0.128,0.858 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.374:0.066,0.494,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.542:0.007,0.444,0.549 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0,0.049,0.95 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18046077 SNP-3.18044858. A G . PASS AR2=0.911;DR2=0.934;AF=0.3 GT:DS:GP 1|0:1.434:0.08,0.406,0.514 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.861,0.133,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.803,0.182,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.819,0.172,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.142,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.85,0.143,0.006 1|1:2:0,0,1 0|1:1.391:0.063,0.482,0.455 1|1:1.841:0.005,0.149,0.846 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.431:0.019,0.531,0.45 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.677:0.42,0.483,0.097 1|1:2:0,0,1 1|0:0.855:0.34,0.464,0.195 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.662:0.038,0.261,0.701 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 1|1:1.508:0.061,0.37,0.569 1|1:1.444:0.052,0.451,0.497 0|0:0.748:0.473,0.306,0.221 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.01,0.184,0.806 0|1:1.535:0.055,0.356,0.589 1|1:1.444:0.07,0.416,0.514 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.722:0.398,0.483,0.12 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.061,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.151:0.856,0.137,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.243:0.117,0.522,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.504:0.062,0.372,0.566 1|1:2:0,0,1 0|0:0.207:0.805,0.183,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0.096:0.906,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.564:0.048,0.34,0.612 0|0:0:1,0,0 1|1:1.538:0.053,0.355,0.591 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.64:0.04,0.279,0.68 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.219:0.806,0.169,0.025 1|1:1.551:0.049,0.35,0.6 0|0:0:1,0,0 0|0:0.193:0.818,0.171,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.568:0.46,0.512,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.176,0.01 1|1:1.499:0.063,0.375,0.562 0|0:0:1,0,0 0|1:0.962:0.164,0.711,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.529:0.056,0.359,0.585 1|1:1.833:0.006,0.155,0.839 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.185:0.823,0.168,0.008 0|0:0.169:0.838,0.155,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.45:0.077,0.396,0.527 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.865,0.128,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.262:0.119,0.499,0.381 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.965,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.67:0.026,0.278,0.696 1|1:2:0,0,1 1|1:1.625:0.04,0.295,0.665 1|1:1.877:0.003,0.116,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.791:0.029,0.15,0.821 1|1:1.787:0.033,0.148,0.82 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 +3 18048585 SNP-3.18047366. A G . PASS AR2=0.976;DR2=0.98;AF=0.399 GT:DS:GP 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.085:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.09,0.002 0|0:0.127:0.878,0.118,0.005 0|0:0:1,0,0 0|0:0.122:0.884,0.111,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.083,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.885,0.11,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.337:0.682,0.3,0.018 0|0:0.073:0.927,0.073,0 0|0:0.181:0.832,0.155,0.013 0|0:0.455:0.644,0.257,0.099 0|0:0.125:0.876,0.124,0.001 0|0:0.161:0.843,0.152,0.004 0|0:0.164:0.84,0.155,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.906,0.093,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.131:0.874,0.121,0.005 0|0:0.179:0.83,0.161,0.009 0|0:0.195:0.818,0.169,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.888,0.106,0.006 1|1:2:0,0,1 0|0:0.212:0.788,0.211,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.255:0.753,0.239,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.076:0.925,0.073,0.002 0|0:0.106:0.897,0.101,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0.2:0.811,0.178,0.011 0|0:0:1,0,0 0|0:0.121:0.883,0.113,0.004 0|0:0.123:0.881,0.115,0.004 0|0:0.337:0.678,0.308,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0.118:0.887,0.107,0.005 0|0:0.156:0.852,0.139,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.123:0.881,0.116,0.004 0|0:0.133:0.871,0.124,0.005 0|0:0.098:0.905,0.092,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18053020 SNP-3.18051801. C A . PASS AR2=0.978;DR2=0.981;AF=0.276 GT:DS:GP 0|0:0:1,0,0 1|1:1.883:0,0.117,0.883 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.811:0.008,0.173,0.819 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1.079:0.215,0.491,0.294 1|0:1:0,1,0 1|1:1.32:0.102,0.476,0.422 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.114:0.2,0.486,0.314 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.813:0.018,0.151,0.831 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.065:0.216,0.502,0.282 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.482:0.039,0.441,0.52 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.815:0.022,0.141,0.837 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.005,0.114,0.881 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.897:0.003,0.098,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.007,0.132,0.861 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.002,0.084,0.914 0|0:0:1,0,0 +3 18053071 SNP-3.18051852. A G . PASS AR2=0.938;DR2=0.953;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.471:0.085,0.358,0.556 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.658:0.001,0.34,0.659 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.756:0.016,0.213,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.32:0.133,0.414,0.453 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0.001 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.434:0.572,0.422,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.921:0.269,0.541,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.712:0.396,0.496,0.108 0|0:0.216:0.788,0.209,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.922,0.073,0.005 0|0:0:1,0,0 0|0:0.234:0.781,0.204,0.015 0|0:0.277:0.734,0.256,0.01 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.793:0.233,0.74,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.945,0.053,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.289:0.716,0.28,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.213:0.081,0.625,0.294 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.576:0.041,0.342,0.617 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.78:0.013,0.194,0.793 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.13:0.201,0.469,0.331 1|1:1.649:0.033,0.285,0.682 1|1:1.507:0.06,0.373,0.567 1|1:1.5:0.055,0.389,0.556 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.069:0.935,0.061,0.004 0|1:0.802:0.356,0.486,0.158 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.78:0.013,0.194,0.793 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.611:0.526,0.337,0.137 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.012,0.172,0.816 1|1:1.669:0.028,0.275,0.697 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.281:0.743,0.233,0.024 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0.001 0|0:0:1,0,0 0|0:0:1,0,0 +3 18054349 SNP-3.18053130. A G . PASS AR2=0.978;DR2=0.983;AF=0.317 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.505:0.098,0.298,0.604 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.91,0.09,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.855:0.007,0.13,0.862 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.001,0.089,0.91 0|0:0:1,0,0 1|1:1.615:0.037,0.311,0.652 1|1:2:0,0,1 1|1:1.74:0.02,0.22,0.76 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.542:0.043,0.372,0.585 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.717:0.014,0.255,0.731 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.849:0.008,0.136,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.004:0.996,0.004,0 0|0:0.001:0.999,0.001,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.843,0.153,0.004 0|0:0.178:0.827,0.168,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0.089:0.912,0.088,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 1|1:1.938:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0.135:0.883,0.099,0.018 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.919,0.081,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.002,0.106,0.892 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.095:0.905,0.094,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0,0.074,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.577:0.5,0.424,0.076 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18062019 SNP-3.18060800. A G . PASS AR2=0.991;DR2=0.993;AF=0.256 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.14:0.866,0.129,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.011,0.274,0.715 1|1:2:0,0,1 0|0:0.157:0.851,0.14,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.108,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.123:0.883,0.111,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.329:0.695,0.282,0.023 0|0:0.137:0.863,0.137,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18063349 SNP-3.18062130. C A . PASS AR2=0.937;DR2=0.952;AF=0.412 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.382:0.656,0.305,0.038 0|0:0.135:0.872,0.121,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.231:0.785,0.2,0.015 0|0:0:1,0,0 0|0:0.428:0.609,0.355,0.036 1|1:2:0,0,1 0|1:0.49:0.572,0.366,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.333:0.693,0.28,0.027 0|1:1:0,1,0 0|1:0.571:0.482,0.466,0.053 0|0:0.232:0.784,0.2,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.785,0.2,0.015 0|0:0:1,0,0 0|0:0.266:0.752,0.231,0.017 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.273:0.748,0.231,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.223:0.785,0.206,0.009 0|0:0.468:0.588,0.356,0.056 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.659,0.313,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.075:0.926,0.074,0.001 0|0:0:1,0,0 0|0:0.24:0.763,0.235,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.354:0.664,0.318,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.209:0.799,0.194,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.444:0.607,0.342,0.051 0|0:0.2:0.81,0.179,0.01 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.099:0.902,0.098,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.72:0.392,0.496,0.112 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0.149:0.852,0.147,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.299:0.708,0.285,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.202:0.804,0.189,0.006 0|0:0.268:0.749,0.235,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.064:0.939,0.058,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.56:0.563,0.315,0.122 0|0:0.237:0.779,0.205,0.016 1|0:1:0,1,0 0|0:0.243:0.758,0.24,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.181:0.825,0.17,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.23:0.785,0.2,0.015 0|0:0.23:0.785,0.2,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.274:0.752,0.222,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.191:0.816,0.176,0.007 0|0:0.261:0.756,0.226,0.017 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.166:0.835,0.163,0.001 0|0:0.353:0.659,0.33,0.011 0|0:0.28:0.746,0.227,0.027 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.673,0.293,0.034 0|0:0.055:0.946,0.053,0.001 0|0:0.23:0.785,0.2,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.847,0.146,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.149:0.879,0.094,0.028 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.57:0.531,0.368,0.101 1|1:2:0,0,1 0|0:0:1,0,0 +3 18063776 SNP-3.18062557. A G . PASS AR2=0.943;DR2=0.956;AF=0.276 GT:DS:GP 1|1:1.46:0.035,0.47,0.495 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.811:0.375,0.438,0.187 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.532:0.047,0.375,0.578 0|1:1:0,1,0 1|1:1.706:0.018,0.259,0.723 0|0:0:1,0,0 1|1:1.529:0.016,0.439,0.545 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.294:0.101,0.504,0.395 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.48:0.021,0.479,0.501 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.85:0.004,0.142,0.854 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.591:0.009,0.392,0.6 1|0:0.833:0.265,0.636,0.098 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 1|1:1.928:0.001,0.07,0.929 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.809:0.004,0.183,0.813 1|1:2:0,0,1 1|1:1.606:0.024,0.346,0.63 0|0:0:1,0,0 0|1:0.937:0.23,0.604,0.166 0|1:0.679:0.405,0.511,0.084 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.005,0.216,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.295:0.161,0.383,0.456 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.032,0.154,0.815 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.287:0.114,0.485,0.401 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.748:0.028,0.196,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0.002,0.071,0.927 0|0:0:1,0,0 0|1:0.989:0.097,0.816,0.087 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.876:0.005,0.113,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.796:0.208,0.788,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.872:0.327,0.473,0.2 1|1:1.646:0.02,0.315,0.666 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.054,0.945 1|0:1.483:0.074,0.369,0.557 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:1.943:0.001,0.054,0.944 1|1:1.648:0.025,0.303,0.672 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18066116 SNP-3.18064897. A G . PASS AR2=0.993;DR2=0.994;AF=0.227 GT:DS:GP 1|1:1.923:0.001,0.074,0.925 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.003,0.066,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.861:0.005,0.13,0.865 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.913:0.003,0.081,0.916 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.894:0.004,0.099,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.897:0.131,0.841,0.028 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.859,0.137,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.006,0.093,0.901 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.002,0.05,0.948 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18068233 SNP-3.18067014. A G . PASS AR2=0.913;DR2=0.935;AF=0.593 GT:DS:GP 1|1:1.658:0.017,0.309,0.674 0|0:0:1,0,0 1|1:1.707:0.009,0.275,0.716 0|0:0:1,0,0 1|1:1.391:0.098,0.413,0.489 1|1:1.951:0.001,0.046,0.952 1|1:1.309:0.12,0.452,0.429 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:1.902:0.003,0.093,0.904 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 0|1:1.523:0.058,0.362,0.58 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.571:0.051,0.326,0.623 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.478:0.064,0.395,0.541 1|1:1.385:0.094,0.427,0.479 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 1|1:1.26:0.146,0.448,0.406 1|1:1.829:0.006,0.159,0.835 1|1:2:0,0,1 1|1:1.302:0.121,0.456,0.423 1|1:2:0,0,1 1|1:1.932:0.001,0.065,0.933 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.349:0.098,0.456,0.446 1|1:2:0,0,1 1|1:1.578:0.051,0.321,0.628 1|1:1.968:0.001,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.577:0.047,0.329,0.624 1|1:1.844:0.01,0.136,0.854 1|1:1.54:0.041,0.377,0.581 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.861:0.007,0.126,0.868 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.6:0.045,0.309,0.645 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.598:0.033,0.337,0.631 0|1:1.182:0.138,0.543,0.32 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.549:0.041,0.368,0.59 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.517:0.064,0.356,0.581 1|0:1:0,1,0 1|1:1.405:0.088,0.42,0.493 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.021,0.247,0.731 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:1.839:0.001,0.158,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.753:0.016,0.214,0.769 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.004,0.113,0.883 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.491:0.068,0.373,0.559 1|1:2:0,0,1 1|1:1.864:0.004,0.129,0.867 1|1:1.84:0.003,0.153,0.844 1|1:1.671:0.012,0.305,0.683 1|1:1.976:0,0.024,0.976 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.004,0.13,0.866 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|0:1.508:0.065,0.362,0.573 1|1:1.821:0.008,0.163,0.829 1|1:1.8:0.008,0.185,0.807 1|1:1.647:0.025,0.303,0.672 1|0:1.439:0.082,0.397,0.521 1|1:1.94:0.001,0.058,0.941 1|1:1.999:0,0.001,0.999 0|1:1.56:0.011,0.419,0.571 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.83:0.011,0.149,0.84 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.85:0.005,0.14,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.345:0.096,0.463,0.441 1|1:1.791:0.004,0.201,0.795 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.681:0.018,0.283,0.699 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.008,0.162,0.83 1|1:1.383:0.099,0.418,0.483 1|1:1.846:0.006,0.142,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.028,0.226,0.746 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0.001,0.02,0.98 1|1:2:0,0,1 1|1:1.924:0.004,0.067,0.929 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18068263 SNP-3.18067044. C A . PASS AR2=0.981;DR2=0.982;AF=0.443 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.971:0.265,0.499,0.236 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.949:0.277,0.498,0.226 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.745:0.399,0.456,0.145 0|1:1:0,1,0 1|0:0.933:0.284,0.499,0.217 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.197:0.851,0.1,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.969:0.266,0.499,0.235 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.97:0.265,0.499,0.235 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.967:0.267,0.499,0.234 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18068326 SNP-3.18067107. A G . PASS AR2=0.994;DR2=0.995;AF=0.28 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.869:0.003,0.125,0.872 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.829:0.006,0.158,0.836 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.003,0.115,0.881 0|1:1:0,1,0 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.506:0.05,0.393,0.557 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18068469 SNP-3.18067250. A G . PASS AR2=0.992;DR2=0.992;AF=0.228 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.002,0.085,0.913 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.96,0.038,0.001 1|0:1:0,1,0 1|1:1.924:0.002,0.073,0.925 1|0:0.894:0.26,0.585,0.155 1|0:1:0,1,0 1|1:1.924:0.001,0.073,0.925 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.005,0.143,0.852 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.041:0.96,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.008,0.137,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.005,0.119,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18068608 SNP-3.18067389. A G . PASS AR2=0.995;DR2=0.996;AF=0.24 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.802,0.187,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.149:0.854,0.143,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.275:0.738,0.249,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.001,0.066,0.932 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18069083 SNP-3.18067864. C A . PASS AR2=0.994;DR2=0.996;AF=0.384 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.616:0.399,0.587,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0,0.143,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.378:0.658,0.307,0.035 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18069191 SNP-3.18067972. A G . PASS AR2=0.915;DR2=0.936;AF=0.231 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.514:0.028,0.429,0.543 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.346:0.684,0.286,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.746:0.352,0.55,0.098 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.367:0.667,0.299,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.355:0.677,0.292,0.032 0|0:0:1,0,0 0|0:0.362:0.671,0.296,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.675,0.293,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.766,0.232,0.002 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 1|0:0.833:0.232,0.703,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.197:0.1,0.604,0.296 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.516:0.565,0.354,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.725:0.33,0.614,0.055 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.375:0.639,0.346,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0,0.119,0.881 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.846:0.187,0.781,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.124:0.894,0.089,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.062:0.193,0.551,0.256 0|0:0.22:0.797,0.185,0.017 0|0:0:1,0,0 0|1:1.006:0.156,0.682,0.162 0|1:0.723:0.385,0.508,0.107 0|0:0.495:0.555,0.395,0.05 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.466:0.591,0.353,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.838,0.153,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.352:0.68,0.289,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.365:0.668,0.298,0.033 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.994:0.008,0.99,0.002 0|0:0.635:0.473,0.418,0.109 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.316:0.709,0.267,0.025 0|0:0.361:0.672,0.296,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.369:0.654,0.324,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.752,0.217,0.031 1|1:2:0,0,1 1|0:0.502:0.519,0.46,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.369:0.665,0.301,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.884,0.108,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.724,0.259,0.016 0|0:0.142:0.867,0.123,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.897,0.097,0.006 0|0:0.238:0.787,0.187,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.352:0.679,0.29,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18069653 SNP-3.18068434. A G . PASS AR2=0.973;DR2=0.979;AF=0.233 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 1|1:1.911:0.004,0.082,0.915 0|0:0:1,0,0 1|1:1.627:0.018,0.337,0.645 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.008,0.195,0.796 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.663:0.027,0.282,0.691 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.474:0.011,0.503,0.485 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.041,0.959 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.755,0.228,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.233:0.774,0.219,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.79,0.2,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.007,0.183,0.81 1|1:1.676:0.032,0.259,0.709 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.128:0.876,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.134,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.861:0.002,0.134,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.893:0.001,0.105,0.894 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.659:0.004,0.333,0.663 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.855,0.141,0.005 0|0:0.048:0.952,0.048,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0.174:0.834,0.159,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.85:0.007,0.137,0.856 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 +3 18070684 SNP-3.18069465. C A . PASS AR2=0.977;DR2=0.98;AF=0.35 GT:DS:GP 0|0:0.056:0.945,0.055,0 1|1:2:0,0,1 0|0:0.133:0.873,0.121,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.13:0.876,0.119,0.006 0|0:0:1,0,0 0|0:0.215:0.788,0.208,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.124:0.881,0.114,0.005 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.001 0|0:0.134:0.872,0.122,0.006 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 1|0:1.161:0.077,0.684,0.238 0|0:0.084:0.918,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0.189:0.819,0.173,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0.122:0.88,0.119,0.001 0|0:0:1,0,0 1|1:1.624:0.026,0.325,0.649 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.073,0.002 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0.001 0|0:0.115:0.886,0.113,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:1.98:0,0.02,0.98 0|1:1.555:0.005,0.434,0.56 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0.061:0.939,0.061,0 1|1:2:0,0,1 0|0:0.227:0.776,0.221,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.121:0.879,0.12,0.001 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.936:0,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.001,0.084,0.915 1|1:2:0,0,1 1|1:1.856:0.002,0.141,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.002,0.066,0.932 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.053:0.947,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.865,0.133,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 1|1:1.908:0.002,0.087,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0.088:0.913,0.086,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.003,0.088,0.909 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.001 0|0:0.066:0.936,0.063,0.001 0|0:0.074:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.002,0.076,0.922 0|0:0:1,0,0 +3 18071668 SNP-3.18070449. C A . PASS AR2=0.983;DR2=0.986;AF=0.357 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0.002,0.075,0.924 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.019,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.952,0.048,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0,0.198,0.802 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.001,0.079,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.114:0.891,0.104,0.005 1|1:2:0,0,1 0|0:0.044:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0.166:0.847,0.141,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.4:0.634,0.332,0.034 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0.222:0.796,0.185,0.018 0|0:0.054:0.946,0.053,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.257:0.779,0.184,0.037 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.894:0.003,0.099,0.897 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.948,0.05,0.002 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.16:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.434:0.597,0.371,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.893,0.101,0.006 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.021,0.001 0|0:0.125:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18074088 SNP-3.18072869. C A . PASS AR2=0.994;DR2=0.995;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.002,0.086,0.912 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.002,0.1,0.898 1|1:1.911:0,0.089,0.911 1|1:2:0,0,1 0|0:0.02:0.98,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:1.926:0.001,0.072,0.927 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.34:0.079,0.501,0.42 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.009,0.136,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18076201 SNP-3.18074982. A G . PASS AR2=0.972;DR2=0.977;AF=0.331 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.791:0.014,0.181,0.805 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.699:0.023,0.255,0.722 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.011,0.169,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.711:0.021,0.247,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.78:0.012,0.196,0.792 1|0:1:0,1,0 0|1:0.865:0.175,0.784,0.041 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.779:0.02,0.182,0.798 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.705:0.022,0.252,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.93,0.069,0.001 1|1:2:0,0,1 1|1:1.742:0.017,0.224,0.759 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.029:0.015,0.942,0.043 0|0:0:1,0,0 1|1:1.775:0.011,0.202,0.786 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.694:0.024,0.259,0.717 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.679:0.026,0.269,0.705 1|1:1.709:0.021,0.248,0.73 1|1:1.774:0.013,0.201,0.787 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.605:0.043,0.309,0.648 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.593:0.047,0.313,0.64 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.882:0.005,0.109,0.887 1|1:1.533:0.057,0.352,0.591 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.005,0.056,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 +3 18076436 SNP-3.18075217. C A . PASS AR2=0.977;DR2=0.984;AF=0.422 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.001,0.13,0.868 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.432:0.615,0.338,0.047 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.371:0.663,0.302,0.035 0|0:0.394:0.645,0.317,0.039 0|0:0.361:0.669,0.3,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.572:0.503,0.421,0.075 0|0:0:1,0,0 0|0:0.084:0.918,0.079,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.768:0.015,0.202,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0.237:0.764,0.236,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.35:0.69,0.27,0.04 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.09:0.91,0.09,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.425:0.621,0.333,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.433:0.614,0.338,0.047 0|0:0.433:0.614,0.338,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0.001 1|1:2:0,0,1 1|1:2:0,0,1 +3 18078290 SNP-3.18077071. C A . PASS AR2=0.991;DR2=0.993;AF=0.318 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.013,0.212,0.775 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.636:0.036,0.292,0.672 1|1:2:0,0,1 1|1:1.784:0.007,0.201,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.001,0.088,0.911 1|1:2:0,0,1 1|1:1.806:0.006,0.182,0.812 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.76:0.247,0.746,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.881:0.002,0.116,0.883 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.004,0.126,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0.006,0.114,0.88 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18079786 SNP-3.18078567. A G . PASS AR2=0.979;DR2=0.983;AF=0.387 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.001,0.069,0.93 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.777:0.034,0.155,0.811 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.001,0.072,0.927 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.464:0.135,0.266,0.599 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.923:0.002,0.074,0.925 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.915:0.002,0.081,0.917 1|1:1.855:0.011,0.122,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0.001,0.03,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.629:0.063,0.245,0.692 0|1:0.958:0.137,0.768,0.095 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.863:0.011,0.115,0.874 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.009,0.179,0.812 1|1:1.922:0.002,0.074,0.924 0|1:0.894:0.307,0.491,0.201 1|1:1.925:0.001,0.072,0.927 1|1:1.925:0.001,0.072,0.927 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.001,0.072,0.927 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.919:0.002,0.078,0.921 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.004,0.118,0.878 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.859,0.141,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.818:0.009,0.164,0.827 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.011,0.112,0.877 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.611:0.03,0.329,0.641 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18079936 SNP-3.18078717. C A . PASS AR2=0.993;DR2=0.993;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0.001,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.921:0.292,0.495,0.213 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.921:0.292,0.495,0.213 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.921:0.292,0.495,0.213 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18080256 SNP-3.18079037. C A . PASS AR2=0.989;DR2=0.992;AF=0.307 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.013,0.235,0.753 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.414:0.088,0.409,0.503 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.665:0.012,0.31,0.677 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.815:0.185,0.815,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0.015,0.214,0.77 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.355:0.677,0.291,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18080395 SNP-3.18079176. C A . PASS AR2=0.969;DR2=0.978;AF=0.274 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.466:0.053,0.428,0.519 0|1:1.164:0.107,0.623,0.271 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.001,0.074,0.924 1|0:1:0,1,0 0|1:1.028:0.234,0.503,0.263 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.671:0.329,0.671,0 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.589:0.043,0.326,0.632 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.807:0.011,0.17,0.819 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|1:1:0,1,0 1|1:1.44:0.047,0.466,0.487 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.423:0.062,0.454,0.485 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.425:0.084,0.406,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.645:0.006,0.343,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.003,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.006,0.262,0.732 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.003,0.089,0.907 0|0:0:1,0,0 +3 18080830 SNP-3.18079611. C A . PASS AR2=0.97;DR2=0.97;AF=0.453 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1:0.25,0.5,0.25 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.017:0.242,0.499,0.259 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:1:0.25,0.5,0.25 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.998:0.251,0.5,0.249 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.002:0,0.998,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.001:0.249,0.5,0.251 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.001:0.25,0.5,0.25 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0.25,0.5,0.25 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.001:0.25,0.5,0.25 1|1:2:0,0,1 1|0:1.001:0.25,0.5,0.25 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0.25,0.5,0.25 1|1:1:0.25,0.5,0.25 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0.25,0.5,0.25 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18080836 SNP-3.18079617. A G . 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C A . PASS AR2=0.999;DR2=0.999;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18082040 SNP-3.18080821. C A . PASS AR2=0.929;DR2=0.946;AF=0.387 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.766:0.035,0.164,0.801 0|0:0.152:0.855,0.138,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.739,0.199,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.244:0.145,0.466,0.389 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.678,0.291,0.031 0|0:0.198:0.811,0.179,0.01 0|0:0:1,0,0 0|0:0.18:0.829,0.162,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.128:0.877,0.117,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.828:0.213,0.747,0.04 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.838:0.028,0.105,0.866 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.207:0.807,0.178,0.014 0|1:1.273:0.159,0.41,0.432 0|0:0:1,0,0 0|1:0.761:0.363,0.512,0.124 0|1:1.252:0.073,0.601,0.326 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.003,0.114,0.883 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 1|0:1.49:0.061,0.388,0.551 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.378:0.641,0.341,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.542:0.527,0.405,0.068 1|0:0.981:0.278,0.464,0.259 1|1:2:0,0,1 0|1:0.864:0.31,0.517,0.174 0|0:0:1,0,0 0|0:0.057:0.945,0.052,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.834:0.328,0.51,0.162 0|0:0:1,0,0 0|1:0.328:0.683,0.306,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.807,0.184,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.215:0.129,0.527,0.344 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.662:0.025,0.289,0.687 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.177:0.831,0.161,0.008 0|0:0.162:0.845,0.147,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.17:0.094,0.642,0.264 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.017,0.237,0.746 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.03,0.97 1|1:1.65:0.023,0.304,0.673 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.007,0.129,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.763:0.014,0.208,0.777 1|1:2:0,0,1 1|1:1.211:0.206,0.377,0.417 0|0:0:1,0,0 0|1:0.664:0.429,0.478,0.093 0|1:0.59:0.451,0.508,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.398:0.684,0.234,0.082 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.836,0.157,0.007 1|1:1.399:0.132,0.337,0.531 1|1:1.839:0.029,0.104,0.868 1|1:1.851:0.027,0.094,0.878 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.004,0.115,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.763:0.014,0.208,0.777 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.774:0.015,0.196,0.789 +3 18082263 SNP-3.18081044. A G . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18082361 SNP-3.18081142. A G . PASS AR2=0.971;DR2=0.98;AF=0.44 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 1|1:1.915:0.002,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.937:0.001,0.061,0.938 0|0:0.631:0.466,0.437,0.097 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.93:0.487,0.095,0.418 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.778:0.013,0.196,0.791 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.007,0.135,0.858 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.823:0.007,0.162,0.831 0|0:0.026:0.974,0.025,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.528:0.482,0.507,0.01 0|0:0.032:0.968,0.032,0 1|1:1.999:0,0.001,0.999 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.146,0.006 0|0:0.14:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.146,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.834,0.158,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.005,0.054,0.94 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.517:0.552,0.38,0.069 1|1:2:0,0,1 1|0:1.199:0.041,0.718,0.241 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0.131:0.873,0.123,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.937:0.001,0.061,0.938 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.991:0,0.008,0.991 0|0:0:1,0,0 0|0:0.489:0.568,0.376,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.142,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18083205 SNP-3.18081986. A G . PASS AR2=1;DR2=1;AF=0.302 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18083836 SNP-3.18082617. C A . PASS AR2=0.979;DR2=0.983;AF=0.303 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.003,0.107,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 1|1:1.718:0.02,0.242,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.025,0.247,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.706:0.022,0.251,0.727 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.722:0.02,0.239,0.742 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.826:0.012,0.151,0.837 0|0:0:1,0,0 1|1:1.744:0.017,0.223,0.76 0|0:0:1,0,0 1|1:1.691:0.024,0.261,0.715 0|1:1.361:0.065,0.508,0.426 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.808:0.008,0.175,0.816 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.004,0.118,0.878 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.805:0.012,0.171,0.817 1|1:1.764:0.014,0.209,0.777 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.677:0.026,0.271,0.703 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.001,0.082,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.007,0.154,0.838 0|0:0:1,0,0 +3 18083935 SNP-3.18082716. A G . PASS AR2=0.99;DR2=0.992;AF=0.352 GT:DS:GP 1|1:1.783:0.012,0.194,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.796:0.007,0.189,0.804 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.011,0.185,0.804 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.007,0.135,0.858 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.011,0.188,0.801 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.011,0.183,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.063:0.003,0.932,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.011,0.189,0.799 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.01,0.18,0.81 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18084528 SNP-3.18083309. C A . PASS AR2=0.951;DR2=0.961;AF=0.476 GT:DS:GP 0|0:0.091:0.912,0.086,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.532:0.505,0.458,0.037 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.452:0.566,0.416,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.903,0.095,0.002 0|0:0.153:0.853,0.141,0.006 0|0:0.936:0.286,0.491,0.223 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.247:0.768,0.216,0.015 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0.042:0.959,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.756,0.223,0.021 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.181:0.83,0.158,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.095,0.002 0|0:0:1,0,0 0|0:0.195:0.813,0.178,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0,0.06,0.94 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.419:0.119,0.342,0.539 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:1.996:0,0.004,0.996 0|0:0.286:0.737,0.24,0.023 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.136:0.868,0.128,0.004 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|0:1.05:0,0.95,0.05 1|1:2:0,0,1 0|0:0.198:0.809,0.183,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.028:0.006,0.959,0.034 1|1:1.719:0.022,0.237,0.741 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.708:0.018,0.255,0.727 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.854,0.142,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.639:0.485,0.391,0.124 0|0:0.576:0.474,0.476,0.05 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.783:0.295,0.627,0.078 0|0:0:1,0,0 0|1:1.198:0.138,0.526,0.336 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.035:0.222,0.521,0.257 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.901,0.096,0.003 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|1:1.088:0.155,0.602,0.243 0|0:0.092:0.91,0.087,0.002 1|0:1.052:0.144,0.661,0.195 1|1:2:0,0,1 0|0:0.15:0.856,0.139,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.455:0.014,0.518,0.468 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.111:0.892,0.105,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.557:0.04,0.363,0.597 1|1:1.938:0,0.062,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.002:0.292,0.413,0.294 1|1:2:0,0,1 +3 18084790 SNP-3.18083571. C A . PASS AR2=0.991;DR2=0.993;AF=0.314 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.837:0.006,0.151,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.724:0.013,0.251,0.736 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.892:0.109,0.889,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.872:0.005,0.117,0.877 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.842:0.007,0.143,0.85 1|1:1.722:0.015,0.247,0.738 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.008,0.16,0.832 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.836:0.007,0.149,0.844 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.007,0.143,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18085078 SNP-3.18083859. C A . PASS AR2=0.995;DR2=0.996;AF=0.323 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.814:0.001,0.185,0.815 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.081:0.081,0.757,0.162 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.001,0.147,0.852 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.288:0.713,0.286,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.002,0.075,0.924 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18086336 SNP-3.18085117. A G . PASS AR2=0.993;DR2=0.994;AF=0.34 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|1:1:0,1,0 0|0:0.112:0.892,0.104,0.004 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.308:0.71,0.273,0.018 1|0:1.027:0.002,0.969,0.029 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.874,0.122,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.913,0.086,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.276:0.005,0.713,0.282 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.962,0.037,0.001 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0.286:0.721,0.273,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18087754 SNP-3.18086535. C A . PASS AR2=1;DR2=1;AF=0.43 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 18088128 SNP-3.18086909. A G . PASS AR2=0.969;DR2=0.977;AF=0.242 GT:DS:GP 1|1:1.659:0.03,0.281,0.689 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.625:0.035,0.305,0.66 1|0:1:0,1,0 1|1:1.557:0.05,0.343,0.607 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.55:0.05,0.349,0.601 1|1:1.701:0.023,0.253,0.724 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.62:0.038,0.305,0.658 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.567:0.047,0.338,0.614 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.037,0.317,0.646 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.665:0.03,0.274,0.695 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.723:0.019,0.238,0.743 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.805:0.014,0.168,0.819 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.681:0.024,0.271,0.705 1|1:1.753:0.016,0.215,0.769 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.009,0.139,0.852 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 18091827 SNP-3.18090608. C A . PASS AR2=0.995;DR2=0.995;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0,0.145,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.098,0.09,0.812 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.249:0.772,0.208,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18094199 SNP-3.18092980. C A . PASS AR2=0.993;DR2=0.994;AF=0.303 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.816:0.009,0.167,0.825 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.009,0.165,0.826 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.006,0.145,0.85 1|1:1.805:0.01,0.176,0.814 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.798:0.01,0.181,0.809 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.01,0.183,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.005,0.1,0.895 1|1:1.814:0.009,0.168,0.823 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18095781 SNP-3.18094562. C A . PASS AR2=0.97;DR2=0.971;AF=0.482 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.093:0.207,0.494,0.3 0|0:0:1,0,0 0|1:1.076:0.212,0.5,0.288 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.08:0.212,0.497,0.292 0|1:1:0,1,0 1|0:1.037:0.233,0.497,0.27 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.093:0.207,0.494,0.3 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.093:0.207,0.494,0.3 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.093:0.207,0.494,0.3 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.066:0.219,0.497,0.284 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.064:0.22,0.497,0.283 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.093:0.207,0.494,0.3 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.037:0.233,0.497,0.27 1|1:2:0,0,1 1|0:1.037:0.233,0.497,0.27 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18098167 SNP-3.18096948. C A . PASS AR2=0.983;DR2=0.985;AF=0.34 GT:DS:GP 0|0:0.062:0.939,0.06,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0.13:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0.205:0.805,0.185,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0.058:0.943,0.056,0.001 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 0|0:0.007:0.993,0.007,0 0|0:0.134:0.871,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.065,0 0|0:0.114:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0.149:0.856,0.138,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.016,0.141,0.844 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0,0.122,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.222:0.788,0.202,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.171:0.837,0.154,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.874:0,0.126,0.874 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.813,0.177,0.009 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.859,0.136,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.004 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.86,0.134,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18098474 SNP-3.18097255. C A . PASS AR2=0.995;DR2=0.997;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.533:0.544,0.379,0.077 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.219:0.797,0.187,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18100013 SNP-3.18098794. A G . PASS AR2=0.848;DR2=0.879;AF=0.227 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.808:0.353,0.486,0.161 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.733:0.398,0.471,0.131 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.856:0.326,0.492,0.182 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.81:0.354,0.482,0.164 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.838:0.335,0.492,0.173 1|0:0.816:0.357,0.47,0.173 1|1:2:0,0,1 0|1:0.879:0.314,0.494,0.192 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.415:0.631,0.323,0.046 0|0:0.27:0.751,0.228,0.021 1|1:2:0,0,1 0|0:0.31:0.72,0.25,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.686,0.279,0.035 0|0:0.408:0.632,0.328,0.04 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.468:0.553,0.426,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.72,0.253,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.653:0.447,0.454,0.1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.168:0.845,0.141,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.58:0.493,0.434,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.511:0.541,0.407,0.052 1|0:0.497:0.555,0.393,0.052 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.636:0.453,0.458,0.089 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.156:0.848,0.149,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.703,0.267,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.417:0.644,0.296,0.06 0|0:0:1,0,0 0|0:0.302:0.727,0.245,0.028 0|0:0.295:0.729,0.247,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.525:0.519,0.436,0.044 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.191:0.242,0.325,0.433 1|1:2:0,0,1 1|0:0.745:0.407,0.442,0.152 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.454:0.584,0.378,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.886:0.31,0.494,0.196 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.886:0.31,0.494,0.196 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.886:0.31,0.494,0.196 0|0:0:1,0,0 1|0:0.827:0.342,0.49,0.169 1|1:0.869:0.319,0.492,0.189 0|0:0.267:0.756,0.221,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.393:0.007,0.593,0.4 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.783:0.365,0.486,0.149 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.609:0.447,0.496,0.056 1|0:1.088:0.086,0.741,0.173 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.954:0.28,0.486,0.234 1|1:2:0,0,1 0|0:0.408:0.633,0.327,0.04 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.366:0.675,0.283,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.888:0.31,0.493,0.197 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.886:0.31,0.495,0.195 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.248:0.198,0.356,0.446 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.817:0.355,0.473,0.172 0|0:0:1,0,0 0|1:0.947:0.317,0.42,0.264 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.891:0.307,0.495,0.198 0|0:0.037:0.964,0.035,0.001 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|1:0.836:0.268,0.629,0.103 +3 18101093 SNP-3.18099874. C A . PASS AR2=0.999;DR2=0.999;AF=0.317 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18101803 SNP-3.18100584. A G . PASS AR2=0.991;DR2=0.992;AF=0.334 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0.064:0.937,0.061,0.001 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.035:0.965,0.035,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.077:0.927,0.07,0.003 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.072:0.932,0.065,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.927,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.934,0.063,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0.019:0.981,0.018,0 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.972:0.001,0.026,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.927,0.07,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.961:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.925,0.071,0.003 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.927,0.07,0.003 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.229:0.798,0.175,0.027 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.927,0.069,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.007,0.992 0|0:0.073:0.93,0.066,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18102046 SNP-3.18100827. A G . PASS AR2=0.994;DR2=0.994;AF=0.243 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0.141:0.872,0.116,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.003:0.997,0.003,0 0|0:0.056:0.945,0.054,0.001 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.944,0.055,0.001 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.942,0.058,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.98:0.02,0.98,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.056:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18107278 SNP-3.18106059. A G . PASS AR2=0.987;DR2=0.989;AF=0.265 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.89,0.107,0.002 0|0:0:1,0,0 0|0:0.159:0.847,0.146,0.007 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.859,0.136,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.252:0.772,0.203,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.084,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.883,0.113,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.279:0.726,0.269,0.005 1|0:1:0,1,0 1|0:0.842:0.175,0.808,0.017 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.893:0.006,0.095,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.123,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.851,0.119,0.03 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.872,0.125,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 18108444 SNP-3.18107225. C A . PASS AR2=1;DR2=1;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18109625 SNP-3.18108406. C A . PASS AR2=0.973;DR2=0.979;AF=0.409 GT:DS:GP 0|0:0.233:0.778,0.21,0.012 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.461:0.585,0.369,0.046 0|0:0.448:0.59,0.373,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.295:0.732,0.241,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.858,0.135,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.781,0.208,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.986:0.027,0.959,0.014 0|0:0:1,0,0 0|0:0.115:0.89,0.104,0.005 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.348:0.684,0.285,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.815,0.174,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.818,0.178,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.455:0.605,0.335,0.06 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.132:0.054,0.759,0.186 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.218:0.793,0.196,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.704,0.291,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.047,0.001 0|0:0.008:0.992,0.008,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.708,0.266,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.728,0.242,0.03 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.218:0.794,0.195,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.759,0.22,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18110366 SNP-3.18109147. A G . PASS AR2=0.999;DR2=0.999;AF=0.23 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0.05:0.952,0.046,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.957:0.043,0.957,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18111046 SNP-3.18109827. A G . PASS AR2=1;DR2=1;AF=0.317 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18112999 SNP-3.18111780. C A . PASS AR2=0.989;DR2=0.99;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0.255:0.761,0.223,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.923,0.077,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.911,0.086,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.002,0.109,0.889 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.127:0.877,0.118,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.005,0.121,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.02:0.981,0.019,0 0|0:0.049:0.952,0.047,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0.035:0.965,0.035,0 0|0:0.229:0.784,0.204,0.013 1|1:2:0,0,1 0|0:0.115:0.889,0.108,0.003 0|0:0.066:0.935,0.065,0.001 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|0:0.126:0.878,0.118,0.004 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.129:0.876,0.12,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18117044 SNP-3.18115825. C A . PASS AR2=1;DR2=1;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18117720 SNP-3.18116501. A G . PASS AR2=0.993;DR2=0.996;AF=0.218 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.797:0.01,0.182,0.808 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.447:0.04,0.473,0.487 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.1,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.003,0.104,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18123585 SNP-3.18122366. C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18125023 SNP-3.18123804. C A . PASS AR2=0.946;DR2=0.959;AF=0.403 GT:DS:GP 0|0:0.235:0.779,0.207,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.259:0.759,0.224,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.606:0.469,0.457,0.075 0|0:0.487:0.57,0.374,0.057 0|0:0.546:0.533,0.387,0.079 0|0:0.228:0.778,0.216,0.006 1|1:2:0,0,1 0|0:0.613:0.455,0.477,0.068 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.234:0.78,0.207,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.237:0.778,0.208,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.515:0.536,0.414,0.05 0|0:0.228:0.786,0.2,0.014 0|0:0.517:0.566,0.351,0.083 0|0:0:1,0,0 0|0:0.244:0.771,0.213,0.015 1|1:2:0,0,1 0|0:0.092:0.908,0.091,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.903,0.095,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.242:0.774,0.21,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.143:0.861,0.136,0.004 0|0:0.1:0.9,0.1,0 0|0:0.204:0.807,0.182,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.744,0.237,0.019 0|0:0:1,0,0 0|0:0.29:0.729,0.252,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 0|1:1.201:0.014,0.771,0.215 1|1:1.968:0,0.031,0.968 0|1:1.237:0.009,0.744,0.247 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.351:0.65,0.348,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:1.936:0,0.063,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.284:0.736,0.243,0.02 0|0:0:1,0,0 0|0:0.148:0.858,0.137,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.249:0.767,0.217,0.016 0|0:0:1,0,0 0|0:0.312:0.703,0.282,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.259:0.758,0.225,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.719:0.377,0.527,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.807,0.185,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.713:0.431,0.426,0.144 0|0:0.314:0.709,0.268,0.023 0|0:0.202:0.809,0.181,0.01 0|0:0:1,0,0 0|0:0.186:0.819,0.176,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.868,0.127,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.002,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0.001,0.033,0.966 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.777,0.208,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.878,0.112,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18125204 SNP-3.18123985. A G . PASS AR2=0.918;DR2=0.933;AF=0.547 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.551:0.048,0.352,0.6 0|0:0:1,0,0 1|1:1.893:0.003,0.1,0.897 1|1:2:0,0,1 1|1:1.717:0.023,0.236,0.741 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.554:0.048,0.35,0.602 1|1:1.697:0.022,0.259,0.719 1|1:1.696:0.027,0.251,0.723 0|0:0:1,0,0 1|1:1.835:0.002,0.16,0.837 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.795:0.007,0.19,0.803 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.911:0.002,0.085,0.913 1|1:1.767:0.022,0.189,0.789 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 1|1:1.899:0.003,0.096,0.901 1|1:2:0,0,1 1|1:1.627:0.018,0.337,0.645 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.829:0.006,0.159,0.835 1|0:1:0.255,0.491,0.255 1|1:1.809:0.011,0.169,0.82 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 1|0:1.113:0.12,0.646,0.234 1|1:1.996:0,0.004,0.996 1|0:1.348:0.022,0.608,0.37 0|1:1.237:0.162,0.438,0.399 1|1:2:0,0,1 1|1:1.668:0.017,0.299,0.685 1|1:1.717:0.025,0.233,0.742 0|0:0:1,0,0 1|1:1.606:0.048,0.299,0.653 1|1:1.684:0.006,0.303,0.691 0|0:0:1,0,0 0|1:1.354:0.079,0.489,0.433 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.171:0.174,0.481,0.345 1|1:1.918:0.002,0.078,0.92 0|0:1.172:0.174,0.481,0.345 1|1:1.956:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.151:0.1,0.649,0.251 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.652:0.02,0.308,0.672 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.932:0.001,0.067,0.932 1|1:1.531:0.051,0.368,0.581 1|1:1.777:0.018,0.186,0.795 1|1:1.853:0.003,0.141,0.856 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.285:0.101,0.513,0.386 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.696:0.368,0.567,0.065 0|0:0:1,0,0 1|1:1.672:0.032,0.263,0.705 0|0:0:1,0,0 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.848:0.354,0.444,0.202 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 1|1:2:0,0,1 1|1:1.863:0.005,0.127,0.868 1|0:1.427:0.081,0.412,0.507 1|0:1.48:0.035,0.45,0.515 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:1.82:0.013,0.154,0.833 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.897:0.003,0.096,0.9 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.705:0.028,0.24,0.733 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.002:0.251,0.497,0.252 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.882:0.008,0.101,0.89 1|1:2:0,0,1 1|1:1.612:0.036,0.316,0.648 0|1:0.692:0.373,0.562,0.065 1|1:2:0,0,1 1|1:1.923:0.001,0.074,0.925 1|1:1.531:0.062,0.345,0.593 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.969:0.228,0.575,0.197 1|1:1.842:0.007,0.145,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.912:0.002,0.084,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.596:0.02,0.364,0.616 1|1:2:0,0,1 0|1:1.565:0.033,0.369,0.598 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.109:0.194,0.503,0.303 1|1:1.873:0.004,0.118,0.878 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 +3 18127525 SNP-3.18126306. A G . PASS AR2=0.988;DR2=0.99;AF=0.221 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.868,0.132,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:1.948:0.003,0.047,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 1|1:1.711:0.019,0.251,0.73 1|1:1.848:0.007,0.139,0.854 1|1:1.89:0,0.109,0.891 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.002,0.1,0.898 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.007,0.161,0.831 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 1|1:1.721:0.02,0.239,0.741 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.004,0.096,0.901 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.002,0.168,0.83 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18129260 SNP-3.18128041. A G . PASS AR2=0.998;DR2=0.999;AF=0.233 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.628:0.372,0.628,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18130823 SNP-3.18129604. C A . PASS AR2=1;DR2=1;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18130888 SNP-3.18129669. C A . PASS AR2=0.999;DR2=1;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.023:0,0.977,0.023 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18132049 SNP-3.18130830. A G . PASS AR2=1;DR2=1;AF=0.321 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18134289 SNP-3.18133070. C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18137206 SNP-3.18135987. C A . PASS AR2=0.997;DR2=0.997;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.054,0.118,0.828 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.889,0.109,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.878,0.116,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.1:0,0.9,0.1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18137340 SNP-3.18136121. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18140715 SNP-3.18139496. A G . PASS AR2=0.994;DR2=0.996;AF=0.329 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.449:0.615,0.321,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.079:0.924,0.074,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.535:0.466,0.533,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.788,0.212,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18141261 SNP-3.18140042. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18141694 SNP-3.18140475. A G . PASS AR2=0.992;DR2=0.994;AF=0.396 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.163:0.844,0.15,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.087:0.914,0.085,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.608:0.462,0.469,0.069 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.256:0.756,0.233,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.983:0.019,0.978,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.929,0.071,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.833,0.167,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.311:0.714,0.261,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18143019 SNP-3.18141800. C A . PASS AR2=0.983;DR2=0.987;AF=0.374 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.879,0.115,0.006 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.687,0.283,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.83,0.17,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.165:0.839,0.157,0.004 0|0:0:1,0,0 0|0:0.292:0.731,0.247,0.023 0|0:0.237:0.778,0.208,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.667,0.306,0.027 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.829,0.163,0.007 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.723,0.248,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.237:0.777,0.208,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.894,0.104,0.002 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.356:0.676,0.292,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.807,0.182,0.011 0|0:0:1,0,0 0|0:0.095:0.907,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18145208 SNP-3.18143989. C A . PASS AR2=1;DR2=1;AF=0.311 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18147444 SNP-3.18146225. C A . PASS AR2=0.992;DR2=0.993;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.083:0.918,0.081,0.001 1|0:1:0,1,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.298:0.708,0.287,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.098:0.904,0.095,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0.001 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 1|0:0.727:0.399,0.476,0.126 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18148988 SNP-3.18147769. C A . PASS AR2=0.999;DR2=0.999;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.193:0.81,0.187,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18149311 SNP-3.18148092. C A . PASS AR2=0.999;DR2=0.999;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18149640 SNP-3.18148421. A G . PASS AR2=0.983;DR2=0.987;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.114:0.89,0.106,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.138:0.865,0.131,0.003 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.001 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0.157:0.849,0.146,0.005 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.898,0.098,0.004 0|0:0.048:0.953,0.046,0.001 0|0:0.052:0.948,0.051,0.001 0|1:1:0,1,0 0|0:0.078:0.923,0.076,0.001 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.549:0,0.451,0.549 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.976:0,0.023,0.976 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.925,0.073,0.002 0|1:1:0,1,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.035:0.002,0.961,0.037 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.002:0.006,0.986,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.229:0.78,0.21,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.888,0.108,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.01,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.514:0.5,0.486,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18151046 SNP-3.18149827. A G . PASS AR2=0.994;DR2=0.995;AF=0.29 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.879:0.004,0.113,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.008,0.07,0.922 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.783:0.013,0.192,0.796 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.945,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.001,0.088,0.911 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 1|1:2:0,0,1 +3 18151458 SNP-3.18150239. C A . PASS AR2=0.999;DR2=0.999;AF=0.349 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18151506 SNP-3.18150287. A G . PASS AR2=0.995;DR2=0.996;AF=0.304 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.941:0,0.058,0.942 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.482:0.68,0.157,0.162 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.07,0.928 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18152715 SNP-3.18151496. C A . PASS AR2=0.947;DR2=0.964;AF=0.243 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.492:0.073,0.363,0.565 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.922,0.078,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.344:0.095,0.467,0.438 0|0:0:1,0,0 1|0:1.453:0.036,0.474,0.49 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.83:0.007,0.155,0.838 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1.371:0.098,0.434,0.468 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.515:0.062,0.36,0.578 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.567:0.434,0.565,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.701:0.009,0.282,0.709 1|1:2:0,0,1 1|1:1.362:0.101,0.436,0.463 1|1:1.545:0.082,0.291,0.627 1|1:1.574:0.058,0.31,0.632 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.627:0.032,0.308,0.659 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.268:0.069,0.595,0.336 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.628:0.048,0.276,0.676 1|1:1.654:0.029,0.288,0.683 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.553:0.072,0.303,0.625 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.379:0.103,0.414,0.483 0|0:0:1,0,0 +3 18154695 SNP-3.18153476. A G . 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C A . PASS AR2=0.866;DR2=0.886;AF=0.315 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.167:0.843,0.148,0.009 0|1:0.911:0.298,0.494,0.208 0|0:0:1,0,0 0|1:1.027:0.236,0.501,0.263 0|0:0:1,0,0 0|0:0.245:0.772,0.212,0.017 0|1:1.065:0.224,0.487,0.289 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.06:0.227,0.487,0.287 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.911:0.298,0.494,0.209 1|1:2:0,0,1 0|1:1.078:0.201,0.52,0.279 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.135:0.175,0.515,0.31 1|1:2:0,0,1 0|0:0.515:0.539,0.406,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.087:0.208,0.497,0.295 0|0:0:1,0,0 0|0:0.186:0.825,0.163,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.142,0.006 1|1:2:0,0,1 1|0:1.017:0.237,0.509,0.254 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.849:0.344,0.463,0.193 0|0:0.587:0.456,0.502,0.043 0|0:0:1,0,0 1|0:0.964:0.183,0.67,0.147 0|0:0.406:0.627,0.34,0.033 0|1:1.038:0.215,0.532,0.253 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.063:0.217,0.503,0.28 0|0:0:1,0,0 1|0:1.015:0.245,0.495,0.26 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.875,0.121,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.098,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.026:0.24,0.495,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.675:0.451,0.423,0.126 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.844,0.152,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.099,0.004 0|0:0.153:0.854,0.14,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.88,0.112,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.857:0,0.143,0.857 0|0:0.776:0.374,0.475,0.15 0|0:0.995:0.255,0.495,0.25 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.326:0.684,0.305,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.317:0.71,0.263,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.385:0.659,0.296,0.044 0|0:0.189:0.82,0.171,0.009 1|1:2:0,0,1 1|0:0.911:0.297,0.494,0.209 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.072:0.219,0.49,0.291 0|0:0:1,0,0 0|0:0.663:0.457,0.422,0.12 0|1:0.878:0.192,0.738,0.07 0|1:0.662:0.446,0.446,0.108 0|1:0.912:0.297,0.494,0.209 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.965:0.265,0.505,0.23 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.909:0.299,0.494,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.91:0.298,0.494,0.208 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.967:0.269,0.495,0.236 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.696:0.431,0.442,0.127 0|0:0:1,0,0 0|0:0.446:0.586,0.382,0.032 0|0:0.052:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0.938:0.283,0.497,0.22 1|1:2:0,0,1 0|0:0.671:0.451,0.427,0.122 1|1:1.405:0.118,0.359,0.523 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.938:0.24,0.582,0.178 0|0:0.731:0.36,0.549,0.091 0|0:0:1,0,0 0|0:0.166:0.842,0.15,0.008 0|0:0.13:0.876,0.118,0.006 0|0:0:1,0,0 0|0:0.584:0.503,0.41,0.087 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.814,0.175,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.157:0.852,0.139,0.009 1|0:0.909:0.299,0.494,0.208 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|1:0.517:0.49,0.504,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.866,0.128,0.006 0|0:0.062:0.939,0.06,0.001 0|0:0.194:0.819,0.168,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18160285 SNP-3.18159066. C A . PASS AR2=0.99;DR2=0.992;AF=0.328 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.49:0.51,0.49,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:1.966:0,0.033,0.967 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.884,0.109,0.006 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.856,0.137,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.104:0.896,0.104,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.02:0.013,0.955,0.032 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.998:0.013,0.975,0.012 1|1:2:0,0,1 0|1:0.988:0.024,0.965,0.012 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.98:0.033,0.955,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.852:0.151,0.847,0.003 0|0:0.372:0.628,0.372,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0.001 0|0:0.03:0.97,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18160356 SNP-3.18159137. C A . PASS AR2=1;DR2=1;AF=0.313 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.006:0.013,0.967,0.019 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.004:0.016,0.964,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18162961 SNP-3.18161742. A G . PASS AR2=1;DR2=1;AF=0.204 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18163077 SNP-3.18161858. A G . PASS AR2=0.999;DR2=0.999;AF=0.337 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18163718 SNP-3.18162499. A G . PASS AR2=0.984;DR2=0.987;AF=0.262 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.268:0.745,0.242,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.113:0.889,0.109,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.14:0.863,0.133,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.873,0.124,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.157:0.851,0.14,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.858,0.136,0.006 0|0:0.179:0.828,0.165,0.007 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.158,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.013:0.988,0.012,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.117:0.883,0.117,0 0|0:0.231:0.78,0.21,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.202:0.804,0.189,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.232:0.781,0.207,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.134:0.87,0.125,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.878,0.118,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18163964 SNP-3.18162745. C A . PASS AR2=0.997;DR2=0.998;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.044:0.957,0.043,0 1|1:2:0,0,1 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.041:0.96,0.04,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.055:0,0.945,0.055 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.166:0,0.833,0.167 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18164335 SNP-3.18163116. C A . PASS AR2=0.995;DR2=0.996;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0.048:0.952,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0,0.241,0.759 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0,0.07,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.768:0,0.232,0.768 1|1:1.882:0,0.118,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.83:0.189,0.793,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0,0.083,0.917 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18166088 SNP-3.18164869. A G . PASS AR2=0.999;DR2=0.999;AF=0.301 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.087,0.911 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18166305 SNP-3.18165086. C A . PASS AR2=0.996;DR2=0.997;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.672:0.001,0.327,0.672 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.001,0.155,0.845 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.001,0.225,0.774 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18169292 SNP-3.18168073. C A . PASS AR2=0.996;DR2=0.997;AF=0.338 GT:DS:GP 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0.001 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.948,0.052,0.001 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.901,0.099,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.068,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.695,0.297,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18170132 SNP-3.18168913. A G . PASS AR2=1;DR2=1;AF=0.216 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18170561 SNP-3.18169342. C A . PASS AR2=0.996;DR2=0.996;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.911,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.978:0,0.021,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.004,0.264,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.901:0.004,0.092,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.076:0.925,0.075,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18171460 SNP-3.18170241. C A . PASS AR2=0.993;DR2=0.994;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0.092:0.91,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.207:0.8,0.193,0.007 0|0:0.062:0.939,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.76,0.217,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.153:0.855,0.138,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.058,0.001 0|0:0.19:0.816,0.178,0.006 1|1:2:0,0,1 0|0:0:1,0,0 +3 18171786 SNP-3.18170567. A G . PASS AR2=0.998;DR2=0.999;AF=0.258 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.583:0.417,0.583,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18175859 SNP-3.18174640. C A . PASS AR2=0.92;DR2=0.922;AF=0.409 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.075:0.219,0.487,0.294 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.061:0.221,0.498,0.282 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.047:0.228,0.498,0.275 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.031:0.235,0.499,0.266 1|0:1.088:0.211,0.489,0.299 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.046:0.228,0.498,0.274 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.056:0.223,0.498,0.279 0|0:1.118:0.206,0.471,0.324 1|1:2:0,0,1 1|1:1.059:0.221,0.499,0.28 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.046:0.228,0.498,0.274 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.21:0.051,0.688,0.261 1|1:2:0,0,1 1|1:1.895:0.003,0.099,0.898 0|1:0.808:0.192,0.808,0 1|1:2:0,0,1 0|1:0.966:0.048,0.938,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.003,0.109,0.888 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.002,0.085,0.912 1|1:1.805:0.008,0.178,0.813 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.037:0.232,0.498,0.269 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.047:0.227,0.498,0.275 0|1:0.969:0.265,0.501,0.234 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.049:0.227,0.498,0.275 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.153:0.189,0.469,0.342 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.046:0.228,0.498,0.274 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.045:0.228,0.498,0.274 0|1:1.034:0.234,0.499,0.267 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.044:0.23,0.497,0.273 1|0:1.128:0.203,0.467,0.33 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.046:0.228,0.498,0.274 1|1:2:0,0,1 1|0:1.048:0.227,0.498,0.275 1|0:1.046:0.228,0.498,0.274 1|1:1.068:0.217,0.498,0.285 0|0:0:1,0,0 1|0:1.046:0.228,0.498,0.274 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.047:0.228,0.498,0.274 0|1:1.052:0.225,0.498,0.277 1|0:1.046:0.228,0.498,0.274 0|0:1.047:0.227,0.498,0.274 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.064:0.219,0.498,0.283 1|0:1:0,1,0 1|1:1.898:0.002,0.097,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18176323 SNP-3.18175104. C A . PASS AR2=0.994;DR2=0.994;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.077:0.924,0.075,0.001 1|1:2:0,0,1 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.08,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.893,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.954,0.046,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.115:0.886,0.114,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.117:0.886,0.111,0.003 0|0:0.087:0.915,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.103:0.9,0.097,0.003 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.155:0.856,0.133,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18176660 SNP-3.18175441. A G . PASS AR2=1;DR2=1;AF=0.263 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18176783 SNP-3.18175564. C A . PASS AR2=0.982;DR2=0.985;AF=0.297 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.891:0.004,0.101,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.025,0.266,0.709 1|1:1.777:0.013,0.198,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.995:0,0.005,0.995 1|1:1.788:0.011,0.189,0.799 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.965:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.022,0.258,0.72 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.769:0.013,0.205,0.782 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.753:0.015,0.216,0.769 1|1:1.793:0.011,0.184,0.805 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.756:0.016,0.212,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.016,0.232,0.752 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.826:0.007,0.159,0.833 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.012,0.193,0.796 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.692:0.024,0.259,0.716 1|1:1.666:0.028,0.277,0.694 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 18178565 SNP-3.18177346. A G . PASS AR2=0.906;DR2=0.937;AF=0.296 GT:DS:GP 1|1:1.86:0.004,0.132,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.363:0.656,0.325,0.019 0|0:0:1,0,0 0|0:0.421:0.626,0.327,0.047 0|0:0.494:0.568,0.37,0.062 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.79:0.012,0.187,0.802 1|1:2:0,0,1 1|1:1.484:0.047,0.422,0.531 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.497:0.566,0.371,0.063 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 0|0:0.13:0.877,0.116,0.007 1|1:2:0,0,1 1|1:1.47:0.067,0.396,0.537 1|1:2:0,0,1 1|1:1.932:0.002,0.065,0.934 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.482:0.604,0.309,0.086 1|0:1:0,1,0 1|1:1.951:0.001,0.047,0.952 0|1:1:0,1,0 1|1:1.84:0.009,0.142,0.849 0|0:0:1,0,0 1|1:1.889:0.002,0.108,0.89 0|0:0:1,0,0 0|1:1.409:0.008,0.574,0.418 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.384:0.635,0.346,0.019 0|0:0:1,0,0 1|0:1.24:0.093,0.575,0.333 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.804:0.01,0.176,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.677,0.293,0.03 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.568:0.498,0.437,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.633:0.476,0.415,0.109 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.619:0.487,0.407,0.106 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.634:0.008,0.349,0.643 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.555:0.04,0.365,0.595 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.552:0.532,0.385,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.585:0.507,0.4,0.092 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.263:0.051,0.635,0.314 1|1:2:0,0,1 1|0:0.52:0.555,0.371,0.075 0|0:0:1,0,0 0|1:1.317:0.066,0.552,0.383 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.873:0.001,0.125,0.874 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.6:0.5,0.401,0.099 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0,0.039,0.96 1|1:1.879:0.003,0.115,0.882 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.868:0.005,0.123,0.872 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.003,0.069,0.928 1|1:2:0,0,1 1|1:1.263:0.185,0.368,0.448 1|1:1.749:0.008,0.236,0.757 1|1:1.65:0,0.35,0.65 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.579:0.513,0.395,0.092 0|0:0.103:0.902,0.094,0.005 1|0:1.493:0.01,0.488,0.503 1|1:2:0,0,1 1|1:1.859:0.003,0.134,0.863 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.893:0.002,0.102,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.755:0.015,0.214,0.77 1|0:0.808:0.317,0.557,0.125 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18178993 SNP-3.18177774. C A . PASS AR2=0.992;DR2=0.993;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.091,0.002 1|1:1.952:0,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.797,0.195,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.702,0.294,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0.001,0.072,0.927 1|1:1.883:0.003,0.111,0.886 0|0:0.042:0.959,0.04,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.218:0.789,0.205,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0.184:0.821,0.174,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.005,0.113,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.002,0.077,0.921 0|0:0:1,0,0 +3 18180388 SNP-3.18179169. C A . PASS AR2=0.922;DR2=0.945;AF=0.41 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.863:0.327,0.484,0.189 0|0:0:1,0,0 1|0:0.749:0.389,0.473,0.138 0|0:0:1,0,0 0|0:0.48:0.577,0.366,0.057 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.665:0.431,0.474,0.095 0|0:0.032:0.969,0.031,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.316:0.153,0.378,0.469 1|0:0.817:0.323,0.538,0.14 0|0:0.435:0.612,0.34,0.048 0|0:0.413:0.629,0.328,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.445:0.604,0.347,0.049 0|0:0.626:0.46,0.454,0.086 0|1:0.758:0.374,0.493,0.132 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.411:0.631,0.326,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.675,0.32,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.876,0.123,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.002,0.116,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.123:0.878,0.121,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0.295:0.705,0.294,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.452:0.599,0.35,0.051 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.67:0.437,0.456,0.107 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.421:0.623,0.333,0.044 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.491:0.575,0.359,0.066 0|1:0.571:0.51,0.408,0.081 0|0:0:1,0,0 0|0:0.411:0.631,0.326,0.042 1|1:2:0,0,1 0|0:0.415:0.628,0.329,0.043 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.775:0.373,0.478,0.148 1|0:0.605:0.486,0.423,0.091 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.411:0.631,0.326,0.042 1|1:2:0,0,1 0|1:0.451:0.599,0.35,0.05 0|0:0.411:0.631,0.326,0.042 0|0:0.645:0.45,0.455,0.095 0|0:0:1,0,0 0|0:0.411:0.631,0.326,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.441:0.608,0.343,0.049 0|0:0.411:0.631,0.326,0.042 0|0:0.426:0.619,0.335,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.478:0.578,0.365,0.057 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 +3 18180561 SNP-3.18179342. C A . PASS AR2=0.947;DR2=0.961;AF=0.444 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.441:0.585,0.389,0.026 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.166:0.842,0.151,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.651:0.415,0.518,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.123:0.882,0.113,0.005 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.281:0.747,0.226,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.428:0.625,0.322,0.053 1|0:1:0,1,0 1|0:0.959:0.334,0.373,0.293 0|0:0.566:0.507,0.42,0.073 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.788,0.19,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.14:0.074,0.713,0.214 0|0:0:1,0,0 0|0:0.461:0.585,0.369,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.013,0.111,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.54:0.548,0.363,0.089 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.615:0.481,0.424,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.836,0.159,0.005 0|0:0.313:0.713,0.261,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.345:0.669,0.318,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.363:0.691,0.255,0.054 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.739,0.233,0.029 0|0:0.23:0.777,0.215,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.711:0.419,0.451,0.13 0|0:0.733:0.383,0.501,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.827,0.167,0.006 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0.129:0.877,0.118,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.565:0.516,0.404,0.081 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.547:0.542,0.369,0.089 0|0:0.153:0.854,0.139,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18181071 SNP-3.18179852. A G . PASS AR2=0.999;DR2=0.999;AF=0.208 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18181591 SNP-3.18180372. C A . PASS AR2=0.986;DR2=0.988;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.88:0.003,0.115,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.811,0.167,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.811,0.168,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.189:0.817,0.177,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.002,0.154,0.844 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.941:0.001,0.057,0.942 1|1:1.826:0.007,0.159,0.834 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.833:0.014,0.138,0.847 1|1:1.699:0.026,0.249,0.725 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.904:0.003,0.09,0.907 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.921:0.002,0.075,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.724:0.01,0.257,0.733 1|1:2:0,0,1 1|1:1.934:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.003,0.141,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.13:0.874,0.123,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.007,0.194,0.799 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 18184907 SNP-3.18183688. A G . 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A G . 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A G . PASS AR2=0.996;DR2=0.996;AF=0.37 GT:DS:GP 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.861:0.169,0.801,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.102:0.904,0.09,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.003,0.043,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.122,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.943,0.055,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18190742 SNP-3.18189523. C A . PASS AR2=0.974;DR2=0.978;AF=0.295 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.871:0.005,0.119,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.012,0.182,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.692:0.027,0.254,0.719 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.452:0.548,0.452,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0.001,0.028,0.971 1|1:1.8:0.011,0.177,0.811 1|1:1.971:0.001,0.027,0.972 1|1:2:0,0,1 1|1:1.86:0.005,0.131,0.865 0|0:0:1,0,0 1|1:1.818:0.009,0.165,0.826 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:1.94:0.001,0.058,0.941 1|1:1.953:0.001,0.045,0.954 1|1:1.91:0.001,0.088,0.911 1|1:1.81:0.009,0.172,0.819 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.783:0.01,0.196,0.793 0|0:0.001:0.999,0.001,0 1|1:1.86:0.005,0.13,0.865 1|1:1.781:0.014,0.192,0.795 1|1:1.809:0.01,0.17,0.82 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.672:0.023,0.281,0.695 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.01,0.176,0.813 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0.001,0.023,0.977 1|1:1.578:0.039,0.344,0.617 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.756:0.013,0.218,0.769 1|1:1.719:0.014,0.252,0.734 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.007,0.164,0.83 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.007,0.133,0.86 0|0:0:1,0,0 1|1:1.873:0.005,0.118,0.878 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.057,0.941 1|1:2:0,0,1 1|1:1.971:0.001,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.769:0.013,0.204,0.783 1|1:1.919:0.004,0.074,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18191154 SNP-3.18189935. A G . PASS AR2=0.985;DR2=0.988;AF=0.214 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.397:0.611,0.382,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.058:0.943,0.055,0.001 1|1:2:0,0,1 1|0:1.583:0.039,0.34,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.884:0.003,0.109,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.076:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.867:0.004,0.125,0.871 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 0|0:0:1,0,0 1|1:1.89:0.003,0.104,0.893 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.047,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.131:0.876,0.116,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|0:1:0,1,0 +3 18194227 SNP-3.18193008. C A . PASS AR2=0.94;DR2=0.957;AF=0.257 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.272:0.121,0.487,0.393 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.475:0.072,0.38,0.548 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.454:0.074,0.398,0.528 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.96,0.04,0 1|1:1.824:0.002,0.171,0.827 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.647:0.014,0.326,0.66 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.173:0.114,0.599,0.287 0|0:0.492:0.515,0.477,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.544:0.047,0.362,0.591 0|0:0:1,0,0 1|1:1.494:0.059,0.388,0.553 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.406:0.092,0.41,0.498 1|0:1.479:0.056,0.409,0.535 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.476:0.091,0.342,0.567 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.004,0.075,0.921 1|1:2:0,0,1 1|1:1.563:0.046,0.344,0.609 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.687:0.034,0.244,0.721 1|1:1.832:0.01,0.147,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.62:0.04,0.299,0.66 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.402:0.081,0.436,0.483 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.013,0.192,0.795 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.001,0.096,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.009,0.224,0.767 1|1:2:0,0,1 1|1:1.559:0.042,0.357,0.601 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.682:0.02,0.278,0.702 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.57:0.032,0.366,0.602 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.887:0,0.113,0.887 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.497:0.066,0.371,0.563 1|0:0.597:0.403,0.597,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18194382 SNP-3.18193163. C A . 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A G . PASS AR2=0.997;DR2=0.998;AF=0.39 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.96,0.04,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.901,0.096,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.918,0.08,0.002 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.088:0.912,0.088,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.061:0.005,0.93,0.066 1|1:2:0,0,1 0|0:0.107:0.896,0.101,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18195904 SNP-3.18194685. A G . PASS AR2=0.983;DR2=0.985;AF=0.317 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.247:0.165,0.422,0.412 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.136:0.866,0.132,0.002 0|0:0:1,0,0 0|1:0.904:0.321,0.454,0.225 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.372:0.681,0.265,0.054 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.866,0.13,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.195:0.816,0.173,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.807,0.179,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.197:0.806,0.191,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.108:0.109,0.674,0.217 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.145:0.857,0.142,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.241:0.037,0.685,0.278 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18197169 SNP-3.18195950. A G . PASS AR2=0.969;DR2=0.974;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.755,0.226,0.019 1|0:1.169:0.024,0.784,0.193 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.255:0.764,0.217,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.957,0.04,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0.2:0.82,0.159,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.655:0.427,0.491,0.082 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.014:0.005,0.976,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.793:0.264,0.678,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.924:0.092,0.892,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.221:0.789,0.2,0.01 1|1:2:0,0,1 0|0:0.044:0.957,0.043,0.001 1|1:2:0,0,1 0|0:0.185:0.818,0.179,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.765:0.014,0.206,0.779 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.084:0.089,0.738,0.173 0|0:0.127:0.875,0.123,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 0|0:0.068:0.933,0.065,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.941,0.057,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.444:0.6,0.355,0.044 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.905,0.094,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.095:0.906,0.094,0.001 0|0:0.32:0.722,0.236,0.042 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.742,0.215,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 1|0:1.259:0.02,0.701,0.279 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18197577 SNP-3.18196358. A G . PASS AR2=0.964;DR2=0.969;AF=0.335 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.783:0.37,0.476,0.154 1|0:1:0,1,0 0|0:0.69:0.426,0.459,0.116 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.796:0.363,0.478,0.159 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:0.734:0.401,0.464,0.135 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.788:0.368,0.477,0.156 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0,0.116,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.735:0.4,0.465,0.135 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.789:0.367,0.477,0.156 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.027:0.223,0.527,0.25 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.788:0.368,0.477,0.156 0|1:0.788:0.368,0.477,0.156 1|1:2:0,0,1 0|0:0.617:0.502,0.379,0.119 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.788:0.368,0.477,0.156 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18197640 SNP-3.18196421. A G . PASS AR2=0.959;DR2=0.971;AF=0.308 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.378:0.09,0.442,0.468 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.498:0.058,0.385,0.557 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.528:0.072,0.328,0.6 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.749:0.021,0.209,0.77 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.749:0.019,0.213,0.768 1|1:1.665:0.031,0.273,0.696 0|1:1:0,1,0 1|0:1.659:0.03,0.28,0.69 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.512:0.05,0.389,0.561 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.867:0.006,0.121,0.873 1|0:1:0,1,0 1|0:1.315:0.132,0.421,0.447 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.004,0.097,0.899 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.708:0.024,0.244,0.732 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.691:0.023,0.263,0.714 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.004,0.103,0.893 0|0:0:1,0,0 1|1:1.684:0.028,0.259,0.713 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.642:0.037,0.283,0.68 1|1:1.467:0.075,0.383,0.542 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.609:0.033,0.325,0.642 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.023,0.248,0.729 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.87:0.009,0.111,0.879 0|0:0:1,0,0 0|0:0:1,0,0 +3 18197797 SNP-3.18196578. C A . PASS AR2=0.975;DR2=0.981;AF=0.404 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.416:0.653,0.278,0.069 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.844,0.145,0.011 0|1:1:0,1,0 0|0:0.192:0.817,0.174,0.009 0|0:0.156:0.849,0.146,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.069:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0.085:0.918,0.078,0.004 0|0:0:1,0,0 0|0:0.159:0.845,0.15,0.005 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.48:0.572,0.377,0.052 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.104:0.898,0.099,0.002 0|0:0.151:0.854,0.14,0.005 0|0:0.307:0.721,0.251,0.028 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.046,0.002 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.523:0.547,0.383,0.07 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.915,0.083,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0.146:0.86,0.135,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.562:0.457,0.524,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.886,0.109,0.004 0|0:0.126:0.878,0.118,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.741,0.234,0.025 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.322:0.683,0.312,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.84,0.154,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.876,0.122,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18198206 SNP-3.18196987. C A . PASS AR2=0.999;DR2=0.999;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.998:0.002,0.998,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18201428 SNP-3.18200209. C A . PASS AR2=0.922;DR2=0.937;AF=0.282 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.903:0.274,0.548,0.177 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.216:0.801,0.182,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.818,0.165,0.017 0|0:0.131:0.874,0.122,0.004 0|0:0.123:0.881,0.114,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.888,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.124,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.77,0.214,0.016 0|0:0.11:0.894,0.102,0.004 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.008,0.155,0.837 0|0:0.084:0.918,0.08,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.637:0.032,0.3,0.668 1|1:1.673:0.028,0.27,0.701 0|0:0.089:0.913,0.084,0.002 1|1:1.7:0.026,0.249,0.725 1|1:1.578:0.051,0.32,0.629 0|0:0.055:0.946,0.054,0 0|1:0.961:0.14,0.76,0.1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.536:0.057,0.349,0.593 1|1:1.586:0.043,0.327,0.629 0|0:0:1,0,0 1|1:1.682:0.028,0.263,0.709 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.467:0.091,0.35,0.558 0|0:0:1,0,0 0|0:0.118:0.886,0.11,0.004 1|1:1.582:0.045,0.329,0.626 0|0:0:1,0,0 1|0:1.462:0.071,0.396,0.533 1|1:1.424:0.068,0.44,0.492 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.444:0.065,0.425,0.509 0|0:0:1,0,0 1|1:1.711:0.023,0.242,0.735 1|1:1.619:0.038,0.305,0.657 1|1:1.608:0.039,0.313,0.648 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.713:0.021,0.244,0.735 1|1:2:0,0,1 1|1:1.689:0.026,0.26,0.714 1|1:1.714:0.026,0.234,0.74 1|1:1.743:0.017,0.222,0.761 1|1:1.596:0.042,0.321,0.637 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.635:0.031,0.303,0.666 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.299:0.701,0.299,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.634:0.034,0.299,0.668 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.026,0.001 1|1:1.671:0.027,0.274,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.118,0.004 1|1:2:0,0,1 0|0:0.127:0.878,0.116,0.005 1|1:1.752:0.016,0.216,0.768 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.9,0.097,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.037,0.311,0.652 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.828,0.166,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.828:0.008,0.155,0.836 1|1:2:0,0,1 1|1:1.714:0.02,0.246,0.734 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.689:0.026,0.259,0.715 1|1:1.718:0.022,0.238,0.74 1|1:2:0,0,1 1|1:1.64:0.032,0.295,0.672 1|1:2:0,0,1 1|1:1.763:0.013,0.212,0.775 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18202173 SNP-3.18200954. C A . PASS AR2=0.992;DR2=0.993;AF=0.324 GT:DS:GP 0|0:0:1,0,0 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.947,0.049,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0.001 0|0:0:1,0,0 0|1:0.998:0.002,0.998,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.005,0.14,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.003,0.116,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.013,0.198,0.789 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.983:0,0.017,0.983 1|1:1.831:0.002,0.165,0.833 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.797:0.002,0.199,0.799 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.969:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.001,0.089,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.846:0.003,0.148,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.001,0.075,0.924 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.899:0.101,0.899,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 0|0:0:1,0,0 +3 18204250 SNP-3.18203031. A G . PASS AR2=0.999;DR2=0.999;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.173:0.001,0.825,0.174 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18205698 SNP-3.18204479. C A . PASS AR2=0.998;DR2=0.999;AF=0.328 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.667:0.335,0.662,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18206732 SNP-3.18205513. A G . PASS AR2=1;DR2=1;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18206990 SNP-3.18205771. A G . PASS AR2=1;DR2=1;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18207367 SNP-3.18206148. C A . PASS AR2=0.994;DR2=0.995;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.49:0.52,0.469,0.011 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|1:1.06:0,0.94,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.005,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 +3 18210131 SNP-3.18208912. A G . PASS AR2=0.982;DR2=0.989;AF=0.235 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.347:0.659,0.335,0.006 0|0:0.599:0.49,0.421,0.089 0|0:0.6:0.489,0.421,0.089 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.858,0.142,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.884,0.112,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.206:0.803,0.188,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.485:0.572,0.37,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18212977 SNP-3.18211758. A G . PASS AR2=0.999;DR2=0.999;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.17:0,0.83,0.17 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18217394 SNP-3.18216175. C A . PASS AR2=0.94;DR2=0.941;AF=0.468 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.045:0.229,0.496,0.274 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.978:0.263,0.496,0.241 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.023:0.239,0.499,0.262 1|0:1:0,1,0 1|0:1.047:0.228,0.496,0.275 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.06:0.222,0.497,0.282 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.023:0.239,0.499,0.262 0|0:0:1,0,0 1|0:1:0,1,0 0|0:1.026:0.238,0.499,0.263 0|0:0:1,0,0 0|1:1.023:0.239,0.499,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.032:0.235,0.498,0.267 1|0:0.975:0.262,0.501,0.237 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.558:0.46,0.522,0.018 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.174:0.17,0.486,0.344 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.023:0.239,0.499,0.262 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.023:0.239,0.499,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 1|0:1.024:0.239,0.499,0.263 1|0:1.033:0.234,0.498,0.267 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.032:0.234,0.499,0.267 0|1:1:0,1,0 1|0:1.026:0.237,0.499,0.264 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.026:0.238,0.499,0.264 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.068:0.216,0.501,0.284 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.023:0.239,0.499,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.024:0.239,0.499,0.263 0|1:1.022:0.24,0.499,0.262 0|1:1.037:0.232,0.499,0.269 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.037:0.232,0.499,0.269 +3 18218772 SNP-3.18217553. C A . PASS AR2=0.98;DR2=0.983;AF=0.287 GT:DS:GP 0|0:0:1,0,0 1|1:1.853:0.006,0.135,0.859 0|0:0:1,0,0 1|1:1.851:0.006,0.137,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.86:0.006,0.128,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.856:0.006,0.132,0.862 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1.083:0.096,0.725,0.179 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.005,0.132,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.682:0.024,0.27,0.706 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.853:0.006,0.136,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.863:0.005,0.128,0.867 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.555:0.027,0.392,0.582 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.822:0.008,0.162,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.01,0.177,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.888:0.004,0.104,0.892 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.006,0.136,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.011,0.193,0.795 1|1:1.866:0.005,0.125,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.576:0.014,0.397,0.59 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.014,0.155,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18220398 SNP-3.18219179. C A . PASS AR2=0.991;DR2=0.993;AF=0.397 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.069:0.932,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.084:0.919,0.078,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.31:0.761,0.168,0.071 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.395:0,0.605,0.395 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.759:0.014,0.213,0.773 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.287:0.092,0.529,0.379 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18221043 SNP-3.18219824. A G . PASS AR2=0.89;DR2=0.914;AF=0.531 GT:DS:GP 1|1:1.673:0.027,0.273,0.7 0|0:0:1,0,0 1|1:1.63:0.035,0.301,0.665 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.518:0.06,0.363,0.578 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0,0.082,0.917 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.622:0.034,0.309,0.657 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.579:0.045,0.332,0.623 1|1:2:0,0,1 1|1:1.587:0.043,0.327,0.63 0|0:0:1,0,0 1|1:1.529:0.053,0.365,0.582 1|1:2:0,0,1 1|1:1.557:0.053,0.338,0.61 1|1:1.57:0.046,0.338,0.616 1|1:1.678:0.033,0.257,0.71 1|1:1.536:0.056,0.353,0.592 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.702:0.023,0.251,0.725 0|1:1.697:0.023,0.256,0.72 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.667:0.028,0.277,0.695 0|1:0.794:0.219,0.769,0.013 1|1:2:0,0,1 1|1:1.691:0.024,0.261,0.715 1|1:1.946:0.002,0.051,0.947 1|1:1.667:0.028,0.277,0.695 0|0:0.047:0.956,0.042,0.003 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 1|1:1.6:0.041,0.319,0.641 0|0:0:1,0,0 1|1:1.715:0.021,0.243,0.736 1|1:2:0,0,1 1|1:1.7:0.023,0.254,0.723 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.023,0.252,0.726 1|1:2:0,0,1 0|1:1.166:0.14,0.553,0.307 1|1:2:0,0,1 1|1:1.709:0.022,0.248,0.73 1|1:1.705:0.022,0.25,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.374:0.644,0.337,0.019 0|0:0:1,0,0 1|1:1.705:0.022,0.251,0.727 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.732:0.018,0.232,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.368:0.061,0.509,0.43 1|1:2:0,0,1 0|0:0.157:0.855,0.134,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.222:0.186,0.406,0.408 0|0:0.415:0.589,0.406,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.021,0.245,0.734 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.7:0.023,0.254,0.723 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.571:0.046,0.337,0.617 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.571:0.046,0.337,0.617 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.566:0.047,0.34,0.613 1|1:1.548:0.053,0.346,0.601 1|1:1.713:0.021,0.245,0.734 0|1:0.795:0.218,0.769,0.013 0|0:0:1,0,0 1|1:1.705:0.022,0.25,0.727 1|1:1.664:0.035,0.266,0.699 1|1:2:0,0,1 1|1:1.681:0.032,0.254,0.713 0|0:0:1,0,0 1|1:1.495:0.062,0.38,0.557 1|1:1.535:0.056,0.353,0.591 1|1:2:0,0,1 1|1:1.6:0.041,0.319,0.641 0|0:0:1,0,0 1|1:1.678:0.033,0.256,0.711 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.706:0.022,0.25,0.728 1|1:1.702:0.023,0.252,0.725 1|1:1.71:0.03,0.23,0.74 1|1:2:0,0,1 1|1:1.696:0.023,0.258,0.719 1|1:2:0,0,1 1|1:1.672:0.027,0.274,0.699 1|1:2:0,0,1 1|1:1.541:0.055,0.35,0.595 0|0:0:1,0,0 1|1:1.694:0.024,0.259,0.717 1|1:1.716:0.021,0.243,0.736 1|1:1.72:0.02,0.24,0.74 0|0:0:1,0,0 1|1:1.861:0.003,0.133,0.864 1|1:2:0,0,1 0|1:1.673:0.026,0.276,0.699 1|1:1.698:0.023,0.256,0.721 1|1:1.667:0.028,0.277,0.695 1|1:1.704:0.022,0.251,0.726 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.571:0.046,0.338,0.617 1|1:2:0,0,1 1|1:1.6:0.041,0.319,0.641 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.6:0.041,0.319,0.641 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.041,0.322,0.637 0|0:0.156:0.854,0.135,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.813:0.013,0.161,0.826 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.699:0.023,0.254,0.722 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.634:0.038,0.29,0.672 1|1:1.574:0.045,0.336,0.619 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.703:0.023,0.252,0.725 +3 18222058 SNP-3.18220839. C A . PASS AR2=0.996;DR2=0.997;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.003,0.066,0.93 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0.001,0.02,0.98 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.732:0.412,0.445,0.144 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.112:0,0.887,0.113 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.008,0.116,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18222085 SNP-3.18220866. A G . PASS AR2=0.908;DR2=0.932;AF=0.475 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.557:0.055,0.333,0.612 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.607:0.037,0.32,0.643 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.541:0.056,0.347,0.597 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.549:0.053,0.345,0.602 1|1:1.589:0.042,0.327,0.631 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.087:0.241,0.431,0.328 0|1:1.528:0.048,0.377,0.575 1|1:1.649:0.044,0.263,0.693 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.308:0.12,0.453,0.427 0|0:0:1,0,0 1|1:1.524:0.06,0.355,0.585 1|1:1.68:0.026,0.269,0.706 1|1:1.446:0.089,0.376,0.535 1|1:1.808:0.012,0.168,0.82 0|0:0:1,0,0 1|1:1.617:0.037,0.309,0.654 1|1:2:0,0,1 0|0:0.541:0.537,0.384,0.079 1|1:2:0,0,1 0|0:0.535:0.543,0.379,0.078 0|0:0:1,0,0 1|1:1.572:0.046,0.335,0.618 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.5:0.066,0.368,0.566 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.185:0.133,0.548,0.318 0|0:0:1,0,0 1|1:1.705:0.022,0.251,0.727 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.533:0.051,0.366,0.584 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.863,0.122,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.728,0.243,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.532:0.527,0.415,0.059 1|0:1.327:0.099,0.475,0.426 0|0:0.151:0.864,0.121,0.015 1|1:1.687:0.024,0.265,0.711 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.965:0.088,0.859,0.053 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.543:0.054,0.349,0.597 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.702:0.023,0.252,0.725 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.535:0.055,0.356,0.589 1|1:1.752:0.017,0.215,0.768 0|0:0.535:0.543,0.379,0.078 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.31:0.706,0.279,0.015 0|0:0.694:0.429,0.448,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.625:0.039,0.298,0.664 1|1:1.711:0.032,0.226,0.742 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.641:0.033,0.294,0.674 1|1:2:0,0,1 1|1:1.66:0.03,0.28,0.69 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.531:0.057,0.355,0.588 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.011,0.096,0.893 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.004,0.086,0.91 1|1:1.695:0.023,0.259,0.718 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.656:0.031,0.282,0.687 0|0:1.193:0.146,0.514,0.339 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.865,0.119,0.015 1|1:1.518:0.059,0.364,0.577 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.897:0.345,0.413,0.242 0|0:0.613:0.529,0.328,0.143 1|1:1.846:0.024,0.107,0.869 0|0:0:1,0,0 1|1:1.663:0.029,0.278,0.692 +3 18223715 SNP-3.18222496. A G . PASS AR2=0.903;DR2=0.915;AF=0.503 GT:DS:GP 0|0:1.004:0.231,0.534,0.235 0|0:0.128:0.877,0.119,0.005 1|1:2:0,0,1 0|0:0.085:0.918,0.078,0.003 1|1:1.829:0.008,0.155,0.837 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.831:0.008,0.153,0.839 1|1:1.125:0.19,0.495,0.315 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.023,0.248,0.729 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.009,0.177,0.814 0|0:0.991:0.242,0.526,0.232 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.027,0.22,0.753 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.823:0.34,0.497,0.163 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.874:0.302,0.523,0.176 1|1:1.349:0.127,0.398,0.476 0|1:1.02:0.244,0.492,0.264 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.887:0.312,0.489,0.199 0|0:0:1,0,0 0|1:0.834:0.346,0.475,0.179 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|0:0.822:0.352,0.474,0.174 1|1:2:0,0,1 1|1:1.26:0.175,0.391,0.434 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.919:0.334,0.412,0.254 0|0:1.02:0.243,0.494,0.263 0|1:0.977:0.248,0.528,0.224 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.227:0.155,0.463,0.382 1|1:2:0,0,1 0|1:0.96:0.27,0.499,0.231 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0.109:0.895,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.766,0.217,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.218:0.794,0.195,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.003,0.126,0.871 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.728,0.243,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.451:0.604,0.341,0.055 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.952:0.277,0.493,0.229 1|1:1.997:0,0.003,0.997 0|1:0.996:0.251,0.503,0.246 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.032:0.242,0.484,0.274 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.881,0.113,0.006 1|1:1.832:0.007,0.153,0.839 0|0:0.864:0.33,0.476,0.194 1|1:2:0,0,1 0|0:0.974:0.265,0.497,0.238 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.815:0.009,0.167,0.824 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.616:0.06,0.264,0.676 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.794:0.01,0.185,0.804 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.888:0.004,0.104,0.892 1|1:1.768:0.015,0.202,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.862:0.334,0.469,0.196 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.937:0.285,0.494,0.221 0|0:0:1,0,0 1|1:1.75:0.015,0.221,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.499:0.07,0.361,0.569 1|1:1.86:0.007,0.127,0.866 0|0:0:1,0,0 1|0:1.006:0.251,0.491,0.257 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0,0.048,0.952 1|1:1.315:0.132,0.421,0.447 1|0:1.033:0.235,0.496,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.935,0.062,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.987:0.255,0.503,0.242 1|1:2:0,0,1 0|1:1.042:0.237,0.485,0.278 1|1:2:0,0,1 1|1:1.811:0.007,0.175,0.818 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.818:0.351,0.48,0.169 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.288:0.736,0.241,0.024 0|1:1.081:0.218,0.482,0.3 +3 18223828 SNP-3.18222609. C A . PASS AR2=0.999;DR2=0.999;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.003,0.291,0.706 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18224813 SNP-3.18223594. C A . PASS AR2=0.981;DR2=0.984;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.912:0.003,0.083,0.914 0|0:0.069:0.932,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.745,0.24,0.015 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.838,0.15,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.807,0.182,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.136:0.869,0.126,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.768,0.215,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.158:0.846,0.149,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.003,0.082,0.915 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.911:0.09,0.909,0.001 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.969:0.056,0.92,0.024 1|0:1:0,1,0 0|1:0.911:0.103,0.883,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.006,0.114,0.88 1|1:1.763:0.02,0.197,0.783 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.977:0.074,0.875,0.051 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.163:0.845,0.147,0.008 1|1:1.933:0.002,0.063,0.935 1|1:2:0,0,1 1|1:1.804:0.008,0.181,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.851,0.145,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.837,0.155,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.19:0.819,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.736,0.241,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18226980 SNP-3.18225761. C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.991:0.01,0.988,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18227370 SNP-3.18226151. C A . PASS AR2=0.999;DR2=0.999;AF=0.313 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.91:0.091,0.909,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.026:0.004,0.967,0.03 1|0:1:0,1,0 0|1:1.006:0.002,0.99,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0.001,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18229318 SNP-3.18228099. C A . PASS AR2=1;DR2=1;AF=0.329 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18232933 SNP-3.18231714. C A . PASS AR2=0.986;DR2=0.987;AF=0.311 GT:DS:GP 0|0:0:1,0,0 1|1:1.915:0.002,0.08,0.918 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.005,0.111,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0,0.042,0.958 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.882:0.006,0.107,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0,0.15,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.785:0.01,0.195,0.795 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.961:0.04,0.959,0.001 1|1:1.967:0,0.033,0.967 1|1:1.893:0.005,0.098,0.897 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:1.856:0.005,0.133,0.862 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.789:0.008,0.196,0.797 1|1:1.793:0.013,0.182,0.805 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.82:0.007,0.165,0.827 0|0:0:1,0,0 1|1:1.939:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:1.898:0.003,0.096,0.901 1|1:2:0,0,1 1|1:1.887:0.005,0.103,0.892 1|1:2:0,0,1 1|1:1.869:0.006,0.119,0.875 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.005,0.11,0.885 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.875:0.004,0.117,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.037,0.963 1|1:1.883:0.004,0.109,0.887 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:1.807:0.009,0.176,0.816 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.004,0.102,0.894 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.964 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18234891 SNP-3.18233672. A G . PASS AR2=0.895;DR2=0.927;AF=0.217 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.482:0.578,0.362,0.06 1|1:2:0,0,1 0|0:0.38:0.654,0.312,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.478:0.581,0.36,0.059 0|1:0.974:0.143,0.739,0.118 0|0:0.611:0.474,0.44,0.085 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.391:0.648,0.313,0.039 0|1:0.466:0.589,0.356,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.476:0.584,0.357,0.059 0|0:0.425:0.621,0.334,0.046 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.567:0.589,0.254,0.157 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.193:0.82,0.167,0.013 0|0:0.336:0.689,0.286,0.025 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.9,0.095,0.006 0|0:0.287:0.737,0.239,0.024 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.564:0.508,0.421,0.072 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.599:0.505,0.39,0.105 0|0:0.441:0.593,0.372,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.889,0.111,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.798,0.202,0 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.002 0|0:0.048:0.954,0.044,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.079:0.923,0.075,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.884,0.111,0.005 0|0:0.071:0.931,0.068,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.087:0.915,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.473:0.586,0.356,0.058 0|0:0.102:0.905,0.089,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.148:0.859,0.135,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.447:0.604,0.346,0.051 0|0:0:1,0,0 0|0:0.475:0.585,0.356,0.059 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.509:0.558,0.376,0.066 0|0:0.594:0.487,0.433,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.593:0.495,0.418,0.088 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.655:0.447,0.451,0.102 0|0:0.461:0.593,0.352,0.055 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0.014:0.986,0.014,0 0|0:0.013:0.987,0.013,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0.067:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0.001 0|0:0:1,0,0 0|0:0.152:0.856,0.136,0.008 1|1:2:0,0,1 0|0:0.365:0.677,0.282,0.042 0|0:0.324:0.717,0.242,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.528:0.541,0.391,0.068 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0.001,0.03,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.762,0.216,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.411:0.633,0.323,0.044 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 +3 18235515 SNP-3.18234296. C A . PASS AR2=1;DR2=1;AF=0.315 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.006:0.003,0.987,0.009 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.004:0.003,0.989,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18235969 SNP-3.18234750. A G . PASS AR2=0.959;DR2=0.969;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.01,0.182,0.808 1|1:2:0,0,1 1|1:1.777:0.013,0.198,0.789 0|1:1:0,1,0 1|1:1.772:0.013,0.201,0.785 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.025,0.297,0.678 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.798:0.011,0.18,0.809 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.013,0.198,0.789 1|1:1.74:0.015,0.229,0.755 1|1:1.807:0.009,0.175,0.816 1|1:1.777:0.013,0.197,0.79 1|1:1.764:0.014,0.208,0.778 1|1:1.789:0.011,0.188,0.801 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.988:0.365,0.283,0.352 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.802,0.145,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.858,0.124,0.018 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.202:0.112,0.575,0.313 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.777:0.013,0.197,0.79 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.045:0.955,0.044,0.001 1|1:1.766:0.014,0.206,0.78 1|1:1.833:0.007,0.152,0.841 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.228:0.814,0.144,0.042 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.532:0.101,0.265,0.634 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.031,0.197,0.771 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 +3 18250460 SNP-3.18249241. C A . PASS AR2=0.953;DR2=0.963;AF=0.271 GT:DS:GP 0|0:0:1,0,0 1|1:1.347:0.153,0.347,0.5 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.646:0.039,0.276,0.685 1|1:1.736:0.02,0.224,0.756 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.007,0.119,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.857:0.008,0.126,0.866 0|0:0:1,0,0 1|1:1.688:0.045,0.221,0.734 1|1:2:0,0,1 0|1:1.424:0.045,0.486,0.469 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.896:0.104,0.896,0 1|1:1.674:0.032,0.262,0.706 1|1:2:0,0,1 1|1:1.612:0.033,0.322,0.645 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.027,0.188,0.786 1|1:1.394:0.088,0.431,0.482 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.034,0.296,0.67 0|0:0:1,0,0 1|0:0.988:0.239,0.535,0.227 0|0:0:1,0,0 1|0:1.413:0.044,0.498,0.458 1|1:1.668:0.028,0.276,0.696 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.962:0.264,0.51,0.226 1|1:2:0,0,1 1|1:1.816:0.014,0.157,0.829 1|1:1.95:0.002,0.047,0.951 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.8:0.015,0.171,0.815 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.686:0.03,0.255,0.715 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.644:0.033,0.29,0.677 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.718:0.027,0.228,0.745 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.015,0.186,0.799 0|0:0:1,0,0 1|1:1.944:0.002,0.052,0.946 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:1.794:0.013,0.18,0.807 1|1:1.885:0.007,0.1,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18251991 SNP-3.18250772. A G . PASS AR2=0.98;DR2=0.983;AF=0.284 GT:DS:GP 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.056,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.869,0.127,0.004 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.148:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.863,0.135,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.908,0.089,0.004 0|0:0.12:0.882,0.116,0.002 0|0:0:1,0,0 1|0:1.267:0.015,0.703,0.282 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.311:0.716,0.256,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.212:0.001,0.786,0.213 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.102:0.9,0.098,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.154:0.852,0.142,0.006 0|0:0.149:0.857,0.138,0.006 0|0:0.111:0.89,0.11,0.001 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.852,0.142,0.006 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.554:0.447,0.553,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.079:0.925,0.071,0.004 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.849,0.144,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.951,0.046,0.003 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 18252450 SNP-3.18251231. A G . PASS AR2=0.876;DR2=0.91;AF=0.263 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.492:0.623,0.262,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.667:0.353,0.626,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.516:0.117,0.25,0.633 0|1:0.718:0.451,0.38,0.169 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0.499:0.567,0.368,0.066 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.318:0.053,0.577,0.37 0|0:0.311:0.701,0.287,0.012 0|0:0.079:0.922,0.078,0 1|1:1.531:0.059,0.351,0.59 0|0:0.407:0.594,0.406,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.909:0.325,0.441,0.234 1|0:1.32:0.116,0.447,0.436 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.658,0.322,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.603:0.045,0.307,0.648 1|1:1.637:0.051,0.26,0.688 0|0:0:1,0,0 1|1:1.706:0.025,0.243,0.732 0|0:0.563:0.53,0.377,0.093 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.514:0.594,0.298,0.108 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1.153:0.149,0.549,0.302 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.138:0.862,0.138,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0.218:0.782,0.218,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|0:0.943:0.179,0.698,0.123 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.137:0.046,0.771,0.183 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.769:0.433,0.366,0.201 1|1:2:0,0,1 0|1:0.95:0.235,0.58,0.185 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.012,0.159,0.829 1|1:1.999:0,0.001,0.999 1|1:1.739:0.022,0.217,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.462:0.064,0.409,0.526 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.241:0.157,0.446,0.398 0|0:0:1,0,0 0|1:0.864:0.25,0.636,0.114 0|0:0.363:0.771,0.094,0.134 0|0:0:1,0,0 0|0:0.257:0.743,0.257,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.334:0.666,0.334,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0.093:0.911,0.085,0.004 0|0:0:1,0,0 0|1:0.895:0.368,0.368,0.264 1|1:1.686:0.036,0.241,0.722 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 0|0:0.737:0.402,0.46,0.138 0|1:0.609:0.413,0.566,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.355:0.106,0.433,0.461 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.641:0.035,0.288,0.676 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.129:0.191,0.49,0.32 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.176:0.211,0.402,0.387 1|1:2:0,0,1 1|1:1.78:0.022,0.176,0.802 1|1:2:0,0,1 1|1:1.827:0.018,0.137,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.242:0.779,0.199,0.021 0|0:0:1,0,0 1|1:1.857:0.017,0.108,0.875 0|0:0.661:0.451,0.437,0.112 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.015,0.198,0.787 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18255353 SNP-3.18254134. A G . PASS AR2=0.962;DR2=0.971;AF=0.211 GT:DS:GP 0|1:1:0,1,0 0|0:0.054:0.947,0.053,0.001 1|1:1.933:0.002,0.064,0.934 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.97,0.03,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.806:0.007,0.18,0.813 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.016,0.266,0.719 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.857:0.004,0.135,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.752,0.226,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.07:0.932,0.066,0.002 0|0:0.117:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 1|0:1:0,1,0 0|1:1.254:0.065,0.617,0.319 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.061:0.94,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.586:0.491,0.432,0.077 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.005,0.13,0.865 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.942:0.002,0.055,0.944 0|0:0:1,0,0 1|1:1.941:0.002,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.922:0.28,0.518,0.202 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.521:0.058,0.364,0.579 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.457:0.072,0.399,0.529 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.386:0.615,0.385,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.108:0.896,0.101,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.062:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18265320 SNP-3.18264101. A G . PASS AR2=0.86;DR2=0.893;AF=0.392 GT:DS:GP 1|0:1.323:0.07,0.538,0.392 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.3:0.002,0.696,0.302 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.782:0.023,0.172,0.805 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.174:0.109,0.609,0.283 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.778:0.358,0.506,0.136 1|0:0.743:0.386,0.486,0.129 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.603:0.489,0.42,0.091 1|0:0.649:0.456,0.438,0.105 1|0:0.772:0.371,0.486,0.143 0|1:0.96:0.255,0.53,0.215 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.391:0.097,0.416,0.487 1|1:1.587:0.078,0.258,0.664 1|1:1.976:0,0.024,0.976 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.629:0.035,0.302,0.664 0|1:1.074:0.205,0.515,0.28 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.264:0.142,0.452,0.406 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.421:0.088,0.402,0.509 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.708:0.012,0.268,0.72 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.646:0.032,0.291,0.678 0|0:0.829:0.344,0.483,0.173 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.365:0.081,0.472,0.447 0|1:1.072:0.207,0.514,0.279 1|1:1.672:0.027,0.274,0.699 1|1:1.149:0.195,0.461,0.344 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.858:0.375,0.392,0.233 0|0:0:1,0,0 1|0:1.111:0.191,0.508,0.302 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.346:0.669,0.315,0.016 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.653:0.031,0.286,0.683 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.257:0.14,0.463,0.397 0|0:0.425:0.621,0.333,0.046 0|0:0:1,0,0 1|1:1.612:0.038,0.312,0.65 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.447:0.086,0.382,0.533 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.979:0.212,0.598,0.19 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.273:0.136,0.455,0.409 0|0:0:1,0,0 1|0:1.2:0.121,0.557,0.321 0|0:0.628:0.471,0.429,0.1 0|1:1.69:0.025,0.26,0.715 0|0:0.057:0.943,0.057,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.957:0.284,0.475,0.241 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.639:0.033,0.295,0.672 1|1:1.559:0.05,0.34,0.61 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.21:0.79,0.21,0 1|1:1.518:0.153,0.176,0.671 1|1:2:0,0,1 1|1:1.129:0.189,0.493,0.318 1|1:1.634:0.035,0.296,0.669 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.927,0.073,0 0|0:0:1,0,0 0|0:0.552:0.524,0.399,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.703:0.024,0.248,0.727 0|0:0.447:0.607,0.339,0.054 1|1:1.327:0.114,0.445,0.441 1|1:2:0,0,1 1|1:1.363:0.112,0.413,0.475 0|0:0.575:0.508,0.409,0.083 0|0:0.433:0.617,0.333,0.05 0|0:0.565:0.515,0.405,0.08 1|1:1.544:0.059,0.337,0.604 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.637:0.034,0.295,0.671 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.558:0.52,0.402,0.078 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.279:0.131,0.46,0.409 1|1:1.287:0.132,0.45,0.418 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 +3 18265555 SNP-3.18264336. C A . PASS AR2=0.99;DR2=0.991;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.073:0.927,0.073,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.848,0.144,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.16,0.007 0|0:0:1,0,0 0|0:0.186:0.821,0.172,0.007 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0.161:0.847,0.145,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.107:0.001,0.891,0.108 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.063:0,0.937,0.063 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.255:0.769,0.208,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.096:0.907,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.32:0.698,0.285,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.128:0.887,0.098,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.118:0.885,0.111,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 +3 18265571 SNP-3.18264352. A G . PASS AR2=0.996;DR2=0.996;AF=0.238 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.902:0.002,0.093,0.905 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.875:0.005,0.114,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.002,0.072,0.926 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.018,0.152,0.83 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.86:0.005,0.13,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18266303 SNP-3.18265084. C A . PASS AR2=0.998;DR2=0.999;AF=0.318 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.995:0.005,0.995,0 1|1:2:0,0,1 1|1:1.906:0.002,0.09,0.908 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.892:0.003,0.101,0.895 1|1:1.916:0.004,0.077,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 +3 18268430 SNP-3.18267211. C A . PASS AR2=1;DR2=1;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.999:0.001,0.999,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.002:0,0.998,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18269402 SNP-3.18268183. C A . PASS AR2=0.892;DR2=0.921;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.239:0.775,0.212,0.014 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.624:0.419,0.537,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.677,0.286,0.037 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.585:0.496,0.423,0.081 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.388:0.636,0.34,0.024 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.819,0.172,0.009 0|0:0.411:0.62,0.348,0.032 0|0:0.22:0.793,0.194,0.013 0|0:0.225:0.788,0.2,0.012 1|0:1:0,1,0 0|1:1:0,1,0 0|1:0.82:0.363,0.453,0.183 0|0:0.258:0.757,0.228,0.015 0|0:0:1,0,0 1|0:0.363:0.669,0.299,0.032 0|0:0:1,0,0 0|0:0.572:0.513,0.402,0.085 0|0:0:1,0,0 0|0:0.566:0.519,0.397,0.084 0|0:0.388:0.66,0.292,0.048 0|0:0.565:0.528,0.38,0.093 1|0:1:0,1,0 0|0:0.04:0.961,0.039,0.001 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.805,0.182,0.013 0|0:0.373:0.662,0.302,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.461:0.583,0.372,0.044 0|1:1:0,1,0 0|0:0.23:0.788,0.194,0.018 0|1:1:0,1,0 1|0:1.347:0.118,0.418,0.464 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.351:0.681,0.287,0.032 0|0:0:1,0,0 0|0:0.352:0.684,0.28,0.036 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.221:0.161,0.457,0.382 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.582:0.054,0.31,0.636 1|1:1.366:0.101,0.432,0.467 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.372:0.662,0.305,0.034 0|0:0:1,0,0 0|0:0.414:0.629,0.328,0.043 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.181:0.828,0.164,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.142,0.007 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.793,0.193,0.014 0|0:0:1,0,0 1|0:1.419:0.094,0.392,0.514 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.527:0.545,0.383,0.072 1|0:0.958:0.278,0.487,0.235 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.278:0.744,0.234,0.022 0|0:0.031:0.97,0.03,0 0|0:0.003:0.997,0.003,0 0|0:0.237:0.782,0.2,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.6:0.486,0.428,0.086 0|0:0.085:0.917,0.08,0.002 0|0:0.206:0.805,0.184,0.011 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.001 1|1:2:0,0,1 0|0:0.066:0.939,0.056,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.934,0.066,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.902,0.092,0.006 0|0:0.24:0.775,0.21,0.015 0|0:0:1,0,0 1|0:1.143:0.199,0.459,0.342 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.78,0.206,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.061,0 0|0:0.011:0.989,0.011,0 0|0:0.039:0.961,0.038,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0.33:0.69,0.29,0.02 0|1:0.57:0.508,0.413,0.078 0|0:0:1,0,0 0|0:0.275:0.746,0.233,0.021 0|0:0.048:0.954,0.045,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.232:0.787,0.194,0.019 0|0:0.201:0.812,0.175,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18270795 SNP-3.18269576. C A . PASS AR2=0.952;DR2=0.962;AF=0.256 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.101:0.211,0.477,0.312 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|1:0.919:0.258,0.566,0.177 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.428:0.059,0.454,0.487 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.352:0.087,0.474,0.439 0|0:0.696:0.412,0.48,0.108 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.013,0.107,0.88 1|1:2:0,0,1 1|1:1.525:0.073,0.329,0.598 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.689:0.047,0.217,0.736 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.636:0.041,0.283,0.677 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.386:0.094,0.427,0.48 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.179:0.174,0.473,0.353 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.898:0.013,0.076,0.911 1|1:1.742:0.022,0.213,0.765 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.009,0.083,0.908 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.481:0.094,0.33,0.575 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.248:0.102,0.547,0.351 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.63:0.041,0.287,0.672 1|1:1.737:0.03,0.204,0.766 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.202:0.1,0.599,0.302 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.573:0.051,0.325,0.624 0|0:0:1,0,0 +3 18274457 SNP-3.18273238. A G . PASS AR2=0.948;DR2=0.957;AF=0.277 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.184:0.824,0.167,0.008 0|0:0:1,0,0 0|0:0.162:0.844,0.15,0.006 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.776,0.213,0.011 1|1:1.861:0.005,0.129,0.866 0|0:0.174:0.833,0.159,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.024,0.331,0.645 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.728,0.248,0.024 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.196:0.814,0.176,0.01 0|0:0.203:0.805,0.186,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.851,0.142,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.145:0.86,0.134,0.006 0|0:0.187:0.821,0.17,0.009 0|0:0.189:0.821,0.169,0.01 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.272:0.751,0.226,0.023 0|0:0.067:0.935,0.062,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.661:0.016,0.308,0.676 1|1:1.478:0.066,0.389,0.545 1|1:2:0,0,1 1|1:1.658:0.026,0.29,0.684 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.843:0.007,0.144,0.85 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.001,0.063,0.936 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.146:0.865,0.124,0.011 1|1:2:0,0,1 0|0:0.046:0.955,0.043,0.001 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.337:0.692,0.279,0.029 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.129:0.88,0.111,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.786,0.212,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.151:0.851,0.147,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.818,0.181,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0.242:0.772,0.215,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.908,0.086,0.006 0|0:0.147:0.859,0.135,0.006 0|0:0.254:0.769,0.208,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.724,0.252,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.242:0.774,0.21,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.801,0.19,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.98,0.02,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.26:0.757,0.227,0.017 1|1:1.961:0.001,0.038,0.962 0|0:0:1,0,0 1|1:1.743:0.002,0.254,0.745 0|0:0.267:0.752,0.228,0.019 0|0:0.219:0.795,0.191,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.646:0.026,0.303,0.672 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.915,0.082,0.003 0|0:0:1,0,0 0|0:0.151:0.855,0.139,0.006 0|0:0:1,0,0 0|0:0.171:0.837,0.155,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.099:0.905,0.091,0.004 0|0:0:1,0,0 0|0:0.096:0.907,0.089,0.004 0|0:0.06:0.941,0.057,0.001 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.032,0.001 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 18277824 SNP-3.18276605. C A . PASS AR2=0.982;DR2=0.988;AF=0.371 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.851,0.139,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.175:0.834,0.157,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.358:0.675,0.291,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.842,0.148,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.064:0.001,0.934,0.065 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.115:0.004,0.877,0.119 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.219:0.795,0.19,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.32:0.709,0.262,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.955:0.423,0.199,0.378 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.801,0.186,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18278591 SNP-3.18277372. A G . PASS AR2=0.985;DR2=0.989;AF=0.345 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.617:0.552,0.279,0.169 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.425:0.608,0.358,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.408:0.623,0.345,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.192:0.818,0.173,0.009 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.653:0.434,0.479,0.087 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.954:0.102,0.842,0.056 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.859:0.356,0.428,0.215 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18278747 SNP-3.18277528. A G . PASS AR2=0.999;DR2=0.999;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18279472 SNP-3.18278253. A G . PASS AR2=0.958;DR2=0.966;AF=0.294 GT:DS:GP 1|1:1.878:0.003,0.116,0.881 0|0:0:1,0,0 0|0:0.229:0.784,0.203,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.245:0.769,0.217,0.014 1|1:2:0,0,1 0|0:0.184:0.826,0.165,0.01 0|0:0.211:0.801,0.187,0.012 0|0:0.232:0.781,0.205,0.013 0|0:0:1,0,0 0|0:0.226:0.788,0.198,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.857:0.004,0.136,0.861 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.847,0.144,0.009 0|0:0:1,0,0 0|0:0.084:0.922,0.071,0.006 1|1:1.781:0.012,0.195,0.793 1|1:1.811:0.009,0.171,0.82 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.724:0.019,0.238,0.743 1|1:1.906:0.003,0.088,0.909 1|1:1.762:0.016,0.205,0.779 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.883:0.004,0.109,0.887 0|0:0.157:0.848,0.146,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.8:0.01,0.18,0.81 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.782:0.009,0.201,0.791 0|0:0.293:0.716,0.274,0.009 1|1:2:0,0,1 1|1:1.567:0.035,0.364,0.602 1|1:1.787:0.004,0.206,0.791 1|1:1.833:0.008,0.15,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.892,0.107,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.54:0.039,0.383,0.579 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.82,0.177,0.003 0|0:0:1,0,0 0|0:0.175:0.827,0.171,0.002 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.957,0.042,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.875,0.121,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.777:0.013,0.197,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.754,0.228,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.465:0.594,0.347,0.059 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.921:0.003,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.01,0.197,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.829:0.006,0.159,0.835 1|1:1.775:0.014,0.198,0.788 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.784:0.01,0.196,0.794 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.762:0.006,0.227,0.768 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.09:0.915,0.079,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18281115 SNP-3.18279896. C A . PASS AR2=0.983;DR2=0.986;AF=0.339 GT:DS:GP 0|0:0.111:0.892,0.106,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.259:0.76,0.222,0.018 1|0:1:0,1,0 0|0:0.33:0.697,0.275,0.028 0|0:0:1,0,0 0|0:0.227:0.786,0.201,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.14:0.865,0.131,0.005 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.109:0.894,0.102,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.076:0.926,0.072,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|1:0.909:0.098,0.895,0.007 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.628:0.021,0.329,0.649 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.004,0.131,0.866 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.67:0.03,0.27,0.7 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.006,0.137,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.112:0.892,0.104,0.004 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.878,0.122,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.137:0.869,0.126,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0:1,0,0 0|0:0.244:0.777,0.203,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18283201 SNP-3.18281982. C A . PASS AR2=0.95;DR2=0.961;AF=0.42 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.235:0.779,0.208,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.23:0.784,0.203,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.255:0.761,0.223,0.016 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.235:0.779,0.207,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.777,0.208,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.781,0.205,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.688,0.284,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.702,0.271,0.026 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.446:0.604,0.346,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.316:0.709,0.266,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.221:0.794,0.192,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.26:0.757,0.225,0.017 1|1:2:0,0,1 0|0:0.349:0.679,0.293,0.028 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.148:0.856,0.141,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.068:0.934,0.064,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.749,0.233,0.018 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.363:0.67,0.296,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.77,0.215,0.015 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.367:0.666,0.3,0.033 0|0:0:1,0,0 0|0:0.381:0.656,0.308,0.037 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.241:0.773,0.212,0.014 0|0:0.234:0.781,0.204,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.22:0.793,0.195,0.012 0|0:0.372:0.663,0.302,0.035 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.237:0.778,0.208,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.37:0.663,0.303,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.467:0.592,0.349,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.361:0.672,0.295,0.033 0|0:0.244:0.771,0.214,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.778,0.207,0.015 0|0:0.256:0.763,0.218,0.019 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.366:0.668,0.298,0.034 0|0:0:1,0,0 0|0:0.361:0.672,0.295,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.406:0.634,0.325,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18284753 SNP-3.18283534. A G . PASS AR2=0.985;DR2=0.988;AF=0.227 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.805:0.01,0.175,0.815 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.774:0.008,0.21,0.782 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.733:0.02,0.226,0.753 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.017,0.208,0.775 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.855,0.143,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.934:0.002,0.063,0.935 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.335:0.711,0.244,0.045 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.017,0.206,0.777 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.945 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.719:0.022,0.238,0.741 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.057,0.941 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18286194 SNP-3.18284975. A G . PASS AR2=0.996;DR2=0.996;AF=0.335 GT:DS:GP 1|1:1.965:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.001,0.082,0.917 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.003,0.143,0.853 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:1.976:0,0.023,0.976 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.011,0.164,0.825 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.071,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.852:0.148,0.852,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18289270 SNP-3.18288051. C A . 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A G . PASS AR2=0.989;DR2=0.991;AF=0.33 GT:DS:GP 1|1:1.892:0.003,0.102,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.811:0.011,0.167,0.822 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.774:0.013,0.199,0.787 1|1:1.776:0.013,0.198,0.789 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.019,0.245,0.736 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.749:0.016,0.219,0.765 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.786:0.011,0.193,0.797 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.786:0.01,0.194,0.796 1|1:2:0,0,1 1|0:0.85:0.152,0.846,0.002 1|1:1.806:0.01,0.174,0.816 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.931:0.091,0.888,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.003,0.046,0.952 0|0:0:1,0,0 1|1:2:0,0,1 +3 18291412 SNP-3.18290193. C A . PASS AR2=0.978;DR2=0.981;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.107:0.896,0.102,0.003 0|0:0.152:0.854,0.14,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.895,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.878,0.118,0.005 0|0:0.117:0.886,0.111,0.003 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.822,0.174,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.218:0.794,0.194,0.012 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.833,0.159,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.116:0.886,0.112,0.002 0|0:0:1,0,0 0|0:0.131:0.872,0.126,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.967,0.032,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0.253:0.764,0.219,0.017 1|1:2:0,0,1 0|1:1.087:0,0.913,0.087 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.155:0.852,0.142,0.007 1|1:2:0,0,1 0|0:0.114:0.888,0.11,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.276:0.744,0.236,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 0|0:0.185:0.826,0.162,0.012 0|0:0.129:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.852,0.142,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.276:0.744,0.236,0.02 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.803,0.185,0.011 0|0:0:1,0,0 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0.187:0.822,0.17,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18292401 SNP-3.18291182. C A . PASS AR2=0.896;DR2=0.918;AF=0.254 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.745:0.046,0.162,0.792 0|0:0.227:0.78,0.212,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.774:0.342,0.541,0.116 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.084,0.003 0|0:0.259:0.758,0.225,0.017 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.935,0.059,0.006 0|0:0:1,0,0 0|0:0.345:0.684,0.287,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.251:0.765,0.22,0.016 0|0:0.245:0.77,0.215,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.779,0.207,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.009,0.132,0.859 0|0:0.203:0.818,0.162,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.007,0.135,0.858 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.747:0.023,0.208,0.77 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.968:0.201,0.629,0.17 0|0:0:1,0,0 0|0:0.417:0.632,0.319,0.049 0|0:0:1,0,0 0|1:0.847:0.367,0.418,0.215 1|0:1.069:0.097,0.737,0.166 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.009:0.114,0.763,0.123 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.94:0.265,0.531,0.205 0|0:0:1,0,0 1|1:1.062:0.422,0.093,0.485 0|1:0.906:0.143,0.809,0.049 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.159:0.089,0.664,0.247 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.845:0.271,0.612,0.116 0|0:0:1,0,0 1|0:0.748:0.376,0.501,0.123 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.263:0.064,0.608,0.328 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.207:0.192,0.41,0.399 1|1:2:0,0,1 1|0:1.315:0.095,0.495,0.41 1|1:2:0,0,1 0|0:0.825:0.426,0.322,0.252 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.531:0.059,0.35,0.591 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.521:0.064,0.35,0.586 0|0:0:1,0,0 0|0:0.222:0.791,0.196,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.87,0.127,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.084,0.002 0|0:0.255:0.761,0.222,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.261:0.113,0.513,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.255:0.761,0.223,0.016 0|0:0:1,0,0 0|0:0.242:0.773,0.213,0.015 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|1:1.298:0.105,0.492,0.403 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0.297:0.723,0.257,0.02 1|1:2:0,0,1 0|0:0.056:0.945,0.054,0.001 0|0:0.275:0.757,0.211,0.032 0|0:0:1,0,0 1|0:1.195:0.113,0.58,0.307 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.783:0.02,0.177,0.803 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.581:0.064,0.291,0.645 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 0|0:0.041:0.96,0.039,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.317:0.011,0.66,0.328 0|0:0.206:0.815,0.165,0.021 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.224:0.789,0.197,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 +3 18299589 SNP-3.18298370. C A . PASS AR2=0.96;DR2=0.974;AF=0.371 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.39:0.649,0.313,0.038 1|1:2:0,0,1 0|0:0.454:0.571,0.404,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.156:0.851,0.142,0.007 0|0:0.359:0.672,0.296,0.032 1|0:1:0,1,0 0|0:0.012:0.988,0.012,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.01:0.99,0.01,0 1|0:1:0,1,0 0|0:0.434:0.616,0.335,0.05 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.397:0.642,0.32,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.368:0.668,0.296,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.78,0.204,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.467:0.581,0.37,0.049 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.389:0.646,0.318,0.036 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.429:0.615,0.342,0.043 0|1:0.419:0.596,0.389,0.015 1|0:0.479:0.578,0.366,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.6:0.482,0.435,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.528:0.539,0.395,0.067 0|0:0:1,0,0 0|0:0.571:0.504,0.421,0.075 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.579:0.523,0.376,0.102 0|0:0.039:0.961,0.038,0.001 0|0:0.164:0.85,0.136,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18299632 SNP-3.18298413. A G . PASS AR2=1;DR2=1;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18299669 SNP-3.18298450. A G . PASS AR2=0.923;DR2=0.945;AF=0.283 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0.001 0|0:0.224:0.789,0.198,0.013 0|0:0.298:0.726,0.251,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.204:0.81,0.177,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.264:0.752,0.231,0.016 0|0:0:1,0,0 0|0:0.248:0.769,0.215,0.017 0|0:0.123:0.879,0.119,0.002 0|0:0.325:0.701,0.273,0.026 0|0:0.326:0.7,0.274,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|1:1.44:0.079,0.402,0.519 0|1:1:0,1,0 1|1:1.62:0.043,0.294,0.663 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.88:0.004,0.111,0.884 1|1:2:0,0,1 0|0:0.398:0.634,0.334,0.032 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.41:0.634,0.323,0.044 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.302:0.723,0.252,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0.49:0.573,0.365,0.063 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.376:0.657,0.31,0.033 0|0:0.405:0.634,0.328,0.038 1|1:1.594:0.04,0.326,0.634 0|0:0.49:0.572,0.365,0.063 1|1:2:0,0,1 0|1:0.589:0.466,0.479,0.055 0|0:0.407:0.632,0.33,0.039 1|0:0.505:0.561,0.373,0.066 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.252:0.154,0.441,0.405 0|1:1.01:0,0.99,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.351:0.681,0.287,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.458:0.594,0.355,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.243:0.773,0.211,0.016 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.687,0.282,0.031 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.548:0.058,0.336,0.606 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|0:0.487:0.575,0.364,0.062 0|0:0:1,0,0 1|1:1.791:0.003,0.203,0.794 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.348:0.68,0.292,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.467:0.033,0.467,0.5 1|1:1.94:0.002,0.056,0.942 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18300383 SNP-3.18299164. C A . PASS AR2=0.963;DR2=0.975;AF=0.283 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.677:0.033,0.257,0.71 1|1:2:0,0,1 1|1:1.299:0.126,0.449,0.425 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.358:0.103,0.437,0.46 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.372:0.099,0.43,0.471 1|1:1.307:0.123,0.448,0.43 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.489:0.059,0.394,0.548 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.63:0.375,0.62,0.005 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.399:0.095,0.411,0.494 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.279:0.134,0.454,0.412 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.28:0.135,0.45,0.415 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.508:0.058,0.376,0.566 1|1:2:0,0,1 1|1:1.881:0.007,0.106,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.957:0.001,0.04,0.958 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0.002,0.048,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 18301062 SNP-3.18299843. C A . PASS AR2=0.991;DR2=0.992;AF=0.409 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.368:0.655,0.322,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.903,0.094,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.124:0.88,0.115,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.177:0.167,0.49,0.343 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.074,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.26:0.14,0.46,0.4 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.913,0.084,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18305619 SNP-3.18304400. A G . PASS AR2=0.985;DR2=0.99;AF=0.294 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.533:0.516,0.434,0.05 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.545:0.513,0.43,0.057 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.754:0.392,0.463,0.145 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.41:0.001,0.589,0.41 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.762:0.384,0.469,0.147 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18310618 SNP-3.18309399. C A . PASS AR2=0.974;DR2=0.98;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.019:0.078,0.825,0.097 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.398:0.64,0.321,0.039 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.499:0.556,0.389,0.055 0|1:1:0,1,0 0|0:0.281:0.741,0.237,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.165:0.839,0.156,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.002:0,0.998,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.044:0.197,0.562,0.241 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.271:0.749,0.231,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.028:0.153,0.665,0.181 0|0:0:1,0,0 0|1:0.864:0.286,0.563,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.482:0.581,0.357,0.063 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.371:0.662,0.306,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.513:0.556,0.375,0.069 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.817,0.176,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.173:0.837,0.152,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18310792 SNP-3.18309573. A G . PASS AR2=0.959;DR2=0.97;AF=0.472 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.137:0.869,0.125,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.063:0.937,0.063,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.306:0.007,0.681,0.313 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.742:0.021,0.215,0.763 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.73:0.022,0.226,0.752 1|1:2:0,0,1 1|1:1.745:0.021,0.212,0.766 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.385:0.086,0.442,0.472 1|1:2:0,0,1 0|0:0.128:0.872,0.128,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|0:1.125:0.012,0.852,0.136 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.929,0.071,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.534:0.466,0.534,0 0|0:0.009:0.991,0.009,0 0|0:0.638:0.362,0.638,0 1|1:1.649:0.008,0.334,0.657 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.645,0.353,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.072:0.213,0.503,0.285 0|0:0:1,0,0 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|0:1.309:0.168,0.354,0.478 0|0:0.123:0.877,0.123,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.234:0.149,0.468,0.383 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.135:0.044,0.776,0.179 1|1:1.892:0.008,0.092,0.9 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.13,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.174:0.833,0.161,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.794,0.193,0.013 1|1:2:0,0,1 0|0:0.79:0.329,0.552,0.119 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.789:0.024,0.163,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.188:0.252,0.308,0.44 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 1|1:1.787:0,0.213,0.787 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.748:0.021,0.21,0.769 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18318196 SNP-3.18316977. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18318613 SNP-3.18317394. A G . PASS AR2=0.87;DR2=0.898;AF=0.25 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.854,0.116,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.9:0.283,0.535,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.855:0.343,0.46,0.197 1|1:1.323:0.127,0.422,0.45 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.921:0.292,0.495,0.213 0|1:0.684:0.44,0.436,0.124 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.018:0.241,0.5,0.259 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.369:0.107,0.417,0.476 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.172:0.2,0.429,0.372 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.908:0.274,0.544,0.182 1|0:0.836:0.326,0.512,0.162 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.053:0.948,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.063:0.163,0.611,0.226 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.185:0.821,0.172,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.403:0.63,0.338,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.862,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.621,0.376,0.004 0|0:0:1,0,0 0|0:0.5:0.5,0.5,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.891,0.108,0.001 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.822,0.171,0.008 1|1:1.318:0.116,0.45,0.434 1|1:2:0,0,1 0|1:0.914:0.291,0.505,0.204 0|0:0:1,0,0 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.281:0.139,0.44,0.421 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.088:0.211,0.49,0.299 0|0:0.508:0.599,0.295,0.107 1|1:2:0,0,1 1|0:0.949:0.274,0.502,0.223 0|1:0.603:0.475,0.448,0.078 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.167:0.262,0.309,0.429 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.465:0.568,0.398,0.033 0|0:0.546:0.517,0.421,0.063 0|0:0.766:0.368,0.499,0.133 0|0:0:1,0,0 0|1:0.735:0.374,0.517,0.109 1|1:2:0,0,1 0|1:0.611:0.458,0.473,0.069 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|0:0.72:0.425,0.431,0.145 0|0:0.125:0.877,0.12,0.003 0|0:0:1,0,0 0|0:0.47:0.607,0.316,0.077 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.047:0.238,0.477,0.285 0|1:1.011:0.257,0.475,0.268 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.368:0.633,0.366,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.038:0.176,0.61,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.885,0.105,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.984:0.262,0.492,0.246 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0 0|0:0.119:0.886,0.109,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.338:0.022,0.618,0.36 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.34:0.104,0.451,0.445 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.987:0.261,0.492,0.248 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18318628 SNP-3.18317409. C A . PASS AR2=0.999;DR2=0.999;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.06:0.941,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18319097 SNP-3.18317878. C A . PASS AR2=1;DR2=1;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18319439 SNP-3.18318220. A G . PASS AR2=0.992;DR2=0.993;AF=0.231 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.01,0.172,0.818 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.006,0.114,0.88 1|1:2:0,0,1 1|1:1.878:0.005,0.112,0.883 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.906:0.003,0.089,0.908 1|1:1.768:0.015,0.202,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.003,0.074,0.923 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.833:0.008,0.152,0.841 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.006,0.139,0.854 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.856:0.006,0.132,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18328011 SNP-3.18326792. A G . PASS AR2=0.985;DR2=0.987;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.008,0.136,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.004,0.094,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.782:0.014,0.19,0.796 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.799:0.01,0.182,0.809 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:1.891:0.002,0.104,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|1:0.681:0.43,0.459,0.111 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.11:0.893,0.104,0.003 0|0:0.057:0.944,0.056,0.001 0|0:0.277:0.735,0.252,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.874,0.121,0.005 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.004,0.151,0.845 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.008,0.12,0.872 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.016,0.206,0.779 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18333137 SNP-3.18331918. A G . PASS AR2=0.999;DR2=1;AF=0.348 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.003,0.107,0.89 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18341760 SNP-3.18340541. A G . PASS AR2=0.997;DR2=0.998;AF=0.27 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.572:0.042,0.344,0.614 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18347733 SNP-3.18346514. A G . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18364447 SNP-3.18363228. A G . PASS AR2=0.937;DR2=0.953;AF=0.402 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 1|1:1.947:0,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.764,0.217,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 0|0:0:1,0,0 1|1:1.83:0.006,0.157,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.004,0.097,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0,0.064,0.936 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.361:0.004,0.631,0.365 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.303:0.724,0.249,0.027 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.313:0.712,0.262,0.026 0|0:0.294:0.728,0.25,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.276:0.744,0.237,0.019 0|0:0.139:0.866,0.129,0.005 0|0:0:1,0,0 0|0:0.15:0.857,0.136,0.007 0|0:0:1,0,0 0|0:0.117:0.886,0.11,0.004 1|1:2:0,0,1 0|0:0.434:0.597,0.371,0.031 0|0:0:1,0,0 0|1:0.611:0.425,0.54,0.036 0|0:0.267:0.752,0.23,0.018 1|1:1.962:0.001,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.781,0.204,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.706,0.278,0.016 0|0:0.25:0.767,0.216,0.017 0|0:0.62:0.509,0.363,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.886,0.11,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.837,0.163,0 0|0:0.248:0.793,0.165,0.041 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.051,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.952,0.046,0.002 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0.001 0|0:0.146:0.862,0.13,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.338:0.692,0.279,0.03 0|0:0.076:0.926,0.072,0.002 0|0:0.275:0.742,0.242,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.004,0.092,0.904 0|0:0:1,0,0 0|0:0.697:0.446,0.412,0.142 1|1:2:0,0,1 0|0:0.303:0.72,0.257,0.023 1|1:2:0,0,1 0|0:0.287:0.728,0.258,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.663:0.034,0.27,0.697 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.003,0.08,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.071,0.928 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.396:0.653,0.298,0.049 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.444:0.048,0.46,0.492 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.002,0.083,0.915 1|1:2:0,0,1 0|0:0.279:0.74,0.241,0.019 0|0:0.574:0.484,0.459,0.058 0|0:0:1,0,0 1|1:1.929:0,0.071,0.929 1|1:2:0,0,1 0|1:0.535:0.543,0.379,0.078 0|0:0.324:0.701,0.273,0.025 0|0:0:1,0,0 0|0:0.461:0.588,0.362,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.252:0.766,0.217,0.017 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.177:0.833,0.157,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.352:0.677,0.295,0.029 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0.002,0.033,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.898,0.093,0.01 0|0:0:1,0,0 0|0:0.15:0.853,0.143,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.931,0.065,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.077:0.926,0.071,0.003 +3 18372495 SNP-3.18371276. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18372682 SNP-3.18371463. A G . PASS AR2=1;DR2=1;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18373365 SNP-3.18372146. C A . PASS AR2=0.979;DR2=0.982;AF=0.443 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0.123:0.882,0.113,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.1:0.902,0.097,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0.171:0.836,0.156,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.069:0.001,0.93,0.069 0|0:0:1,0,0 0|0:0.109:0.895,0.1,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.116:0.888,0.107,0.005 1|1:2:0,0,1 0|1:1.109:0,0.891,0.109 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.144:0.862,0.133,0.005 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.84,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.15,0.007 0|0:0.073:0.929,0.069,0.002 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.126:0.879,0.116,0.005 0|0:0.163:0.853,0.131,0.016 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.663:0.025,0.287,0.688 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.865,0.13,0.005 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.156:0.851,0.143,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.153:0.853,0.142,0.006 0|0:0.023:0.977,0.023,0 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.112:0.89,0.108,0.002 0|0:0.156:0.851,0.143,0.006 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.072:0.93,0.069,0.001 0|1:1:0,1,0 0|0:0.133:0.87,0.127,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.104:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0.138:0.87,0.122,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.164:0.853,0.131,0.017 0|0:0.131:0.874,0.121,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18390010 SNP-3.18388791. A G . PASS AR2=0.97;DR2=0.979;AF=0.25 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.874:0,0.125,0.875 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.613:0.035,0.318,0.648 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.467:0.076,0.381,0.543 1|1:1.571:0.043,0.342,0.614 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.552:0.05,0.348,0.602 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.498:0.073,0.356,0.571 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.945,0.05,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.929,0.067,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.959,0.038,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.52:0.057,0.365,0.577 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.15:0.861,0.129,0.011 0|0:0.059:0.945,0.051,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.935:0.002,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.004,0.092,0.904 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.316:0.25,0.183,0.566 0|0:0:1,0,0 0|0:0:1,0,0 +3 18407077 SNP-3.18405858. C A . PASS AR2=0.982;DR2=0.987;AF=0.326 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.505:0.555,0.385,0.06 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.936:0.228,0.608,0.164 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.735:0.011,0.244,0.745 1|1:2:0,0,1 1|0:1.479:0.061,0.398,0.54 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.7:0.001,0.299,0.7 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.956:0.002,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:1.744:0,0.255,0.744 1|1:2:0,0,1 1|1:1.828:0.006,0.159,0.834 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.585:0.495,0.425,0.08 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.006,0.059,0.935 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.225:0.066,0.642,0.292 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18407351 SNP-3.18406132. C A . PASS AR2=0.967;DR2=0.973;AF=0.408 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.132:0.874,0.12,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.757,0.218,0.025 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.392:0.649,0.311,0.041 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.045:0.955,0.045,0 0|0:0.116:0.885,0.113,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.176,0.01 0|0:0:1,0,0 0|0:0.21:0.8,0.19,0.01 0|0:0.175:0.833,0.16,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.796,0.192,0.011 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.116:0.886,0.113,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.323:0.705,0.267,0.028 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.414:0.622,0.341,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.172:0.833,0.163,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.757,0.227,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.723,0.252,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.296:0.726,0.251,0.023 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.229:0.785,0.201,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.926,0.073,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.2:0.812,0.175,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.228:0.786,0.2,0.014 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.835,0.157,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.299:0.72,0.261,0.019 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.202:0.809,0.18,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.846,0.146,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.218:0.796,0.19,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0.189:0.82,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.86,0.136,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.26:0.756,0.227,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.86,0.124,0.016 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.864,0.129,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18408572 SNP-3.18407353. C A . PASS AR2=0.987;DR2=0.989;AF=0.404 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.881,0.116,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.089:0.914,0.084,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.134,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.167:0.84,0.153,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.818,0.173,0.009 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.828,0.163,0.009 0|0:0.235:0.779,0.207,0.014 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.132:0.871,0.126,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.516:0.559,0.366,0.075 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.181:0.835,0.149,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.205:0.805,0.185,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.034:0.967,0.033,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.809,0.183,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.828,0.163,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18408752 SNP-3.18407533. C A . PASS AR2=0.974;DR2=0.98;AF=0.403 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.886,0.108,0.006 0|0:0.071:0.93,0.069,0.001 0|0:0.083:0.918,0.081,0.001 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.68,0.296,0.023 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.528:0.529,0.414,0.057 0|0:0:1,0,0 0|0:0.116:0.887,0.11,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.919,0.079,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.701,0.271,0.028 0|0:0.45:0.574,0.401,0.025 1|0:1:0,1,0 0|0:0.083:0.918,0.081,0.001 0|0:0.136:0.87,0.124,0.006 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.063:0.939,0.059,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.364:0.681,0.274,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.31:0.716,0.257,0.027 0|0:0:1,0,0 0|0:0.343:0.688,0.281,0.031 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.139,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.907,0.091,0.002 0|0:0.082:0.918,0.081,0.001 0|0:0.105:0.898,0.099,0.003 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.07:0.931,0.069,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.34:0.69,0.281,0.029 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0.096:0.906,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.728,0.246,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.128:0.876,0.12,0.004 0|1:1:0,1,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0.045:0.958,0.04,0.003 0|0:0:1,0,0 0|0:0.098:0.904,0.095,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.91,0.085,0.004 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18409058 SNP-3.18407839. C A . PASS AR2=0.981;DR2=0.984;AF=0.404 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.292:0.734,0.239,0.026 0|0:0.17:0.839,0.151,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.071:0.929,0.071,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.778:0.254,0.714,0.032 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.001 0|0:0:1,0,0 0|1:0.87:0.327,0.476,0.197 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.317:0.7,0.282,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.871,0.126,0.003 0|0:0.154:0.852,0.141,0.006 0|1:1:0,1,0 0|0:0.076:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0.094:0.909,0.089,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.055:0.945,0.054,0.001 0|0:0.144:0.862,0.131,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.356:0.709,0.227,0.064 0|0:0.072:0.929,0.069,0.001 0|0:0.37:0.668,0.294,0.038 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.239:0.775,0.212,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.965,0.034,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.721,0.264,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18409330 SNP-3.18408111. A G . PASS AR2=0.878;DR2=0.902;AF=0.308 GT:DS:GP 0|0:0.318:0.704,0.274,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.951:0.176,0.698,0.126 0|1:0.851:0.312,0.524,0.164 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.195:0.167,0.47,0.363 0|0:0:1,0,0 0|0:0.69:0.494,0.321,0.184 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.324:0.103,0.47,0.427 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.797:0.355,0.492,0.153 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.445:0.084,0.387,0.529 1|1:2:0,0,1 0|0:0.372:0.668,0.292,0.04 0|1:1.092:0.2,0.507,0.292 1|1:2:0,0,1 0|0:0.546:0.555,0.344,0.101 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.346:0.685,0.284,0.031 1|1:2:0,0,1 0|0:0.879:0.323,0.476,0.201 1|1:2:0,0,1 0|1:0.999:0.242,0.517,0.241 0|0:0:1,0,0 0|0:0.164:0.844,0.149,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.3:0.724,0.252,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.157:0.181,0.481,0.338 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.067:0.22,0.493,0.287 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.761:0.38,0.478,0.142 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.585:0.46,0.495,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.83:0.347,0.475,0.178 0|0:0:1,0,0 0|1:1.086:0.237,0.441,0.323 0|0:0:1,0,0 0|0:0.899:0.313,0.475,0.212 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.484:0.571,0.375,0.055 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.79:0.36,0.491,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.795,0.185,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.828:0.348,0.476,0.176 0|0:0:1,0,0 1|0:1.021:0.185,0.609,0.206 0|0:0:1,0,0 0|0:0.82:0.33,0.52,0.15 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.127:0.169,0.535,0.296 0|0:0:1,0,0 0|0:0.375:0.65,0.326,0.024 1|1:2:0,0,1 1|1:1.584:0.031,0.353,0.615 0|0:0:1,0,0 0|0:0.571:0.519,0.39,0.091 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.237:0.777,0.21,0.013 0|0:0.093:0.91,0.087,0.003 0|0:0:1,0,0 1|1:1.39:0.095,0.421,0.485 0|1:0.88:0.311,0.499,0.191 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.002,0.073,0.925 1|1:2:0,0,1 0|0:0.553:0.508,0.431,0.061 0|0:0.532:0.578,0.312,0.11 0|1:1.114:0.116,0.655,0.23 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.458:0.039,0.463,0.497 0|0:0.697:0.378,0.548,0.075 1|0:0.819:0.325,0.532,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.388:0.096,0.42,0.484 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.833,0.152,0.014 0|0:0.045:0.956,0.043,0.001 0|0:0.362:0.692,0.254,0.054 0|0:0.029:0.971,0.029,0 0|0:0.888:0.319,0.475,0.206 0|0:0.052:0.95,0.048,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.254:0.759,0.229,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.784:0.261,0.694,0.045 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.053,0.002 +3 18409331 SNP-3.18408112. A G . PASS AR2=0.994;DR2=0.995;AF=0.229 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.836,0.154,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.765,0.219,0.016 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.197:0.812,0.179,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.103:0.899,0.099,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18409522 SNP-3.18408303. C A . PASS AR2=0.974;DR2=0.979;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.129:0.876,0.12,0.004 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.13,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.125:0.879,0.117,0.004 0|0:0.151:0.852,0.145,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.086:0.916,0.081,0.002 0|0:0.101:0.902,0.096,0.003 0|0:0.088:0.914,0.085,0.002 0|0:0:1,0,0 0|0:0.197:0.815,0.173,0.012 0|0:0.193:0.818,0.17,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.907,0.089,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.865,0.131,0.004 0|0:0:1,0,0 0|0:0.101:0.903,0.093,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.007,0.127,0.866 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.639:0.425,0.511,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.096:0.908,0.088,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.909,0.088,0.003 0|0:0.187:0.822,0.169,0.009 0|0:0.462:0.557,0.424,0.019 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.219:0.795,0.191,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.825,0.165,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.004 0|0:0.109:0.895,0.102,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.116:0.888,0.108,0.004 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0.019:0.981,0.019,0 0|0:0.047:0.954,0.045,0.001 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0.011:0.989,0.011,0 0|0:0.034:0.967,0.033,0.001 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.798,0.188,0.014 0|0:0.011:0.989,0.011,0 0|0:0.217:0.789,0.205,0.006 0|0:0.034:0.967,0.032,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.613:0.394,0.598,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.915,0.083,0.002 +3 18410408 SNP-3.18409189. C A . PASS AR2=0.96;DR2=0.965;AF=0.284 GT:DS:GP 0|0:0:1,0,0 1|0:1.594:0.017,0.373,0.611 0|0:0.001:0.999,0.001,0 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.005,0.077,0.918 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.009,0.152,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.6:0.03,0.339,0.63 0|0:0:1,0,0 1|1:1.722:0.018,0.243,0.739 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.767,0.214,0.019 1|0:0.962:0.255,0.529,0.216 1|0:0.846:0.319,0.517,0.165 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0,0.14,0.86 0|0:0:1,0,0 0|1:0.916:0.232,0.621,0.147 1|1:1.276:0.1,0.523,0.376 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.184:0.043,0.729,0.228 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.27:0.134,0.462,0.404 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.855,0.134,0.01 1|1:1.879:0.011,0.1,0.89 0|0:0:1,0,0 1|1:1.73:0.014,0.242,0.744 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.014,0.216,0.771 1|1:2:0,0,1 1|1:1.909:0.005,0.082,0.913 1|1:1.956:0.001,0.041,0.958 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.902:0.005,0.088,0.907 1|1:2:0,0,1 1|1:1.928:0.002,0.068,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.624:0.028,0.321,0.652 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.803:0.009,0.179,0.812 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.135:0.079,0.707,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.003,0.052,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.157:0.104,0.636,0.26 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.001,0.093,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0.003,0.099,0.898 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.005,0.103,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.77,0.208,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18435790 SNP-3.18434571. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.971:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18438070 SNP-3.18436851. C A . PASS AR2=0.998;DR2=0.999;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.403:0.609,0.378,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18438144 SNP-3.18436925. A G . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18439247 SNP-3.18438028. A G . PASS AR2=0.994;DR2=0.995;AF=0.214 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0.047:0.954,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.324:0.686,0.304,0.01 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.823,0.174,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.679,0.313,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18442144 SNP-3.18440925. C A . PASS AR2=0.973;DR2=0.984;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0.544:0.525,0.405,0.07 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.637:0.463,0.438,0.099 0|1:1.145:0.085,0.685,0.23 1|0:1:0,1,0 0|0:0.664:0.447,0.442,0.111 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.036,0.21,0.754 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.454:0.014,0.519,0.467 1|1:1.376:0.13,0.363,0.507 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.416:0.147,0.29,0.563 0|0:0:1,0,0 +3 18442726 SNP-3.18441507. A G . PASS AR2=0.994;DR2=0.994;AF=0.323 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.152:0.853,0.142,0.005 0|0:0:1,0,0 0|0:0.166:0.841,0.151,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.876,0.121,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.261:0.759,0.221,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.944,0.054,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.864,0.133,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.845,0.148,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 +3 18443068 SNP-3.18441849. A G . PASS AR2=0.963;DR2=0.97;AF=0.237 GT:DS:GP 1|1:1.744:0.008,0.239,0.752 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.005,0.153,0.842 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.489:0.546,0.42,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.174:0.838,0.149,0.012 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.151:0.104,0.642,0.255 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.014,0.188,0.797 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.558:0.025,0.392,0.583 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.614:0.043,0.3,0.657 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.787:0.014,0.185,0.801 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.952:0.119,0.81,0.071 1|1:1.658:0.022,0.299,0.679 1|1:2:0,0,1 0|1:1.233:0.143,0.482,0.375 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.276:0.725,0.275,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.955:0.12,0.804,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.933,0.067,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.281:0.734,0.251,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.005,0.117,0.879 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.98:0.268,0.485,0.247 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:1.749:0.013,0.226,0.761 1|1:1.667:0.006,0.32,0.674 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 +3 18443765 SNP-3.18442546. A G . PASS AR2=0.994;DR2=0.996;AF=0.293 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.415:0.097,0.392,0.511 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.127:0.874,0.126,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 1|1:1.887:0.003,0.107,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.884:0.003,0.111,0.887 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18444167 SNP-3.18442948. C A . PASS AR2=0.998;DR2=0.999;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.343:0.657,0.343,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18444805 SNP-3.18443586. C A . PASS AR2=0.987;DR2=0.99;AF=0.382 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.537:0.48,0.502,0.017 0|0:0:1,0,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.167:0.842,0.15,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.949,0.048,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.828,0.166,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.913,0.082,0.005 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.171:0.841,0.147,0.012 1|1:2:0,0,1 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.164:0.842,0.153,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.519:0.559,0.364,0.077 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.758,0.219,0.023 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.799:0.282,0.638,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18458739 SNP-3.18457520. C A . PASS AR2=0.991;DR2=0.995;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.085:0.284,0.346,0.37 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.441:0.098,0.363,0.539 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18462480 SNP-3.18461261. C A . PASS AR2=1;DR2=1;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18463409 SNP-3.18462190. A G . PASS AR2=0.99;DR2=0.992;AF=0.394 GT:DS:GP 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.001,0.09,0.909 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.504:0.073,0.349,0.577 1|1:1.862:0.006,0.126,0.868 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.985:0.222,0.571,0.207 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.96,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.672:0.344,0.64,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.921:0.003,0.074,0.923 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.387:0.668,0.277,0.055 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18463744 SNP-3.18462525. A G . PASS AR2=0.987;DR2=0.989;AF=0.272 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.931,0.065,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0.035:0.966,0.034,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.283:0.015,0.687,0.298 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.036:0.238,0.488,0.274 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.684:0.399,0.518,0.083 0|0:0:1,0,0 0|0:0.237:0.803,0.157,0.04 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0.343:0.657,0.343,0 0|1:1.16:0.024,0.792,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18467139 SNP-3.18465920. A G . PASS AR2=0.998;DR2=0.998;AF=0.388 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.855:0.007,0.13,0.863 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.993:0,0.006,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.904:0.002,0.092,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18467606 SNP-3.18466387. C A . PASS AR2=1;DR2=1;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18475869 SNP-3.18474650. A G . PASS AR2=0.998;DR2=0.999;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.26:0.751,0.239,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18480186 SNP-3.18478967. C A . PASS AR2=0.982;DR2=0.985;AF=0.377 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.252:0.749,0.25,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.18:0.839,0.142,0.019 0|0:0:1,0,0 0|0:0.187:0.823,0.167,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.838,0.149,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.239:0.776,0.209,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.09:0.92,0.07,0.01 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.891,0.105,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.811,0.177,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.828,0.163,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.472:0.598,0.332,0.07 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|1:1:0,1,0 0|0:0.063:0.94,0.058,0.002 1|1:2:0,0,1 0|0:0.079:0.923,0.074,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.882,0.109,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.801,0.191,0.008 1|0:1:0,1,0 0|0:0.079:0.924,0.074,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.937,0.061,0.002 0|0:0:1,0,0 0|0:0.072:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.92,0.071,0.01 0|0:0.301:0.727,0.245,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.849,0.147,0.004 0|0:0.076:0.924,0.076,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18481758 SNP-3.18480539. C A . PASS AR2=0.999;DR2=0.999;AF=0.348 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.033:0.967,0.032,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18483130 SNP-3.18481911. A G . PASS AR2=0.972;DR2=0.979;AF=0.346 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.791,0.196,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.806,0.183,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.419:0.627,0.327,0.046 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.423:0.622,0.333,0.045 0|0:0.524:0.533,0.41,0.057 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.383:0.62,0.376,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.208:0.8,0.192,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.417:0.628,0.326,0.045 1|0:0.625:0.446,0.483,0.071 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.294:0.722,0.262,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.688:0.415,0.482,0.103 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.782,0.204,0.014 1|1:2:0,0,1 0|0:0.12:0.882,0.115,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.821,0.17,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.951 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.786,0.2,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.002,0.14,0.858 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:1.96:0,0.039,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.949,0.049,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.695,0.277,0.028 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 18484788 SNP-3.18483569. A G . PASS AR2=0.971;DR2=0.979;AF=0.378 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.36:0.673,0.294,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.915,0.084,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.599:0.459,0.483,0.058 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.667:0.443,0.448,0.11 0|0:0:1,0,0 0|1:0.601:0.482,0.436,0.083 1|0:0.659:0.438,0.466,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.243:0.779,0.2,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.134:0.869,0.128,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.35:0.669,0.311,0.019 0|0:0.335:0.692,0.282,0.027 0|0:0.392:0.647,0.315,0.039 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.965,0.034,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.962,0.036,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.178:0.837,0.147,0.015 0|0:0.157:0.845,0.153,0.002 0|0:0.385:0.652,0.311,0.037 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.077:0.926,0.071,0.003 0|0:0.058:0.943,0.056,0.001 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.745,0.197,0.058 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.37:0.674,0.281,0.045 1|1:2:0,0,1 +3 18490760 SNP-3.18489541. C A . PASS AR2=0.992;DR2=0.994;AF=0.206 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.361:0.079,0.481,0.44 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.274:0.131,0.464,0.405 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18493244 SNP-3.18492025. C A . PASS AR2=0.962;DR2=0.973;AF=0.385 GT:DS:GP 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.916:0.005,0.074,0.921 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|1:0.671:0.329,0.671,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.001 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.701,0.284,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.781,0.214,0.005 0|0:0.169:0.839,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0.051:0.95,0.05,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|0:0.165:0.835,0.165,0 0|0:0.163:0.838,0.161,0.001 0|0:0:1,0,0 0|0:0.066:0.937,0.06,0.003 0|0:0.037:0.963,0.036,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.599:0.492,0.416,0.092 1|1:2:0,0,1 0|0:0.143:0.857,0.143,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.155:0.85,0.145,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.53:0.521,0.429,0.051 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.207:0.806,0.181,0.013 0|0:0.202:0.801,0.196,0.003 0|0:0:1,0,0 1|0:0.596:0.495,0.415,0.091 0|0:0.151:0.85,0.148,0.002 0|1:1:0,1,0 0|0:0.128:0.879,0.114,0.007 0|0:0.49:0.567,0.375,0.057 0|0:0.089:0.917,0.076,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.997:0,0.003,0.997 0|0:0.016:0.984,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.825,0.167,0.008 1|1:2:0,0,1 0|0:0.068:0.932,0.068,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.425:0.617,0.341,0.042 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.339:0.703,0.254,0.043 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.127:0.875,0.123,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.451:0.621,0.306,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.138:0.869,0.123,0.007 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.599:0.492,0.416,0.092 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18494873 SNP-3.18493654. A G . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18495638 SNP-3.18494419. C A . PASS AR2=0.987;DR2=0.989;AF=0.373 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.222:0.789,0.2,0.011 0|0:0.193:0.817,0.173,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.888,0.105,0.007 0|0:0.277:0.741,0.24,0.019 0|0:0.217:0.795,0.193,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.132:0.871,0.125,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.327:0.704,0.265,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.326:0.701,0.272,0.027 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.07:0.932,0.067,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.289:0.73,0.251,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0.001 0|0:0.272:0.746,0.237,0.017 0|0:0:1,0,0 0|0:0.24:0.775,0.21,0.015 0|0:0.051:0.949,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18496206 SNP-3.18494987. A G . PASS AR2=0.903;DR2=0.929;AF=0.352 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.546:0.533,0.388,0.079 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.024:0.208,0.561,0.232 0|0:0.546:0.533,0.388,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.085:0.153,0.61,0.238 1|0:0.623:0.437,0.502,0.06 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.228:0.018,0.737,0.245 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.002:0.039,0.92,0.041 1|1:1.703:0.018,0.261,0.721 0|0:0.596:0.518,0.368,0.114 0|0:0:1,0,0 0|0:0.736:0.368,0.528,0.104 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.483:0.568,0.38,0.052 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.456:0.075,0.393,0.532 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.609:0.042,0.308,0.65 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.577:0.053,0.317,0.63 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.752:0.011,0.227,0.762 1|1:2:0,0,1 1|1:1.6:0.049,0.302,0.649 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.906:0.003,0.089,0.908 0|1:0.81:0.326,0.538,0.136 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0.002,0.055,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.394:0.101,0.405,0.494 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.455:0.076,0.393,0.531 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.497:0.533,0.437,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.698,0.265,0.037 1|1:1.647:0.033,0.287,0.68 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.469:0.591,0.349,0.06 0|0:0.378:0.664,0.294,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.924:0.315,0.447,0.239 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.643:0.026,0.304,0.669 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.926:0.266,0.543,0.192 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.069:0.091,0.749,0.16 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.003,0.142,0.855 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.987:0.146,0.722,0.132 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.415:0.629,0.326,0.045 0|0:0:1,0,0 0|0:0.478:0.582,0.358,0.06 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.302:0.127,0.443,0.43 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.563:0.044,0.348,0.608 1|1:1.702:0.014,0.269,0.717 1|1:1.772:0.014,0.2,0.786 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.061:0.331,0.277,0.392 1|1:2:0,0,1 1|1:1.768:0.021,0.191,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.008,0.144,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.315:0.126,0.433,0.441 1|1:2:0,0,1 1|1:1.587:0.052,0.31,0.639 1|1:2:0,0,1 1|1:1.637:0.038,0.288,0.675 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.707:0.023,0.246,0.731 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.179:0.202,0.417,0.381 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18496335 SNP-3.18495116. C A . PASS AR2=1;DR2=1;AF=0.453 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0.001,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18501666 SNP-3.18500447. A G . PASS AR2=0.996;DR2=0.997;AF=0.443 GT:DS:GP 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.014,0.121,0.865 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.003,0.056,0.941 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.795,0.2,0.005 1|1:1.926:0.001,0.072,0.927 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.004,0.115,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18501950 SNP-3.18500731. C A . PASS AR2=0.988;DR2=0.99;AF=0.459 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.728:0.034,0.203,0.763 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.038,0.962 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.899,0.099,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0.074:0.928,0.071,0.001 1|1:1.982:0,0.018,0.982 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.026,0 1|1:1.593:0.011,0.385,0.604 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.795,0.194,0.011 1|1:2:0,0,1 0|0:0.115:0.889,0.106,0.004 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:1.966:0.001,0.033,0.967 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.199:0.811,0.18,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.144:0.86,0.135,0.005 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.843,0.143,0.014 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.839,0.15,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.671:0.099,0.131,0.77 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 +3 18503660 SNP-3.18502441. C A . PASS AR2=0.996;DR2=0.996;AF=0.35 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0.061:0.941,0.057,0.002 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.874,0.121,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.002,0.056,0.942 1|1:2:0,0,1 1|1:1.934:0,0.066,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.051,0.949 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.001,0.173,0.825 0|0:0.023:0.977,0.023,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18503942 SNP-3.18502723. C A . PASS AR2=0.998;DR2=0.999;AF=0.454 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.607:0.012,0.368,0.619 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18513093 SNP-3.18511874. C A . PASS AR2=0.989;DR2=0.992;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.212:0.788,0.211,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.117:0.883,0.117,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.006,0.166,0.828 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 1|1:1.96:0,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.77,0.23,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.42:0.076,0.428,0.496 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.115:0.886,0.114,0 1|0:1.231:0.021,0.728,0.251 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.004,0.14,0.856 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.006,0.159,0.835 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18521763 SNP-3.18520544. C A . PASS AR2=0.962;DR2=0.971;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:1.623:0.035,0.307,0.658 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.014,0.166,0.821 1|0:1.452:0.086,0.377,0.538 0|0:0.85:0.434,0.283,0.284 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.585:0.027,0.361,0.612 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.325:0.679,0.317,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.993,0.007,0 1|1:2:0,0,1 1|1:1.935:0.001,0.062,0.936 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.088:0.254,0.403,0.343 1|1:2:0,0,1 1|1:1.896:0.008,0.088,0.904 1|1:2:0,0,1 0|1:1.131:0.105,0.66,0.235 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.851:0.344,0.462,0.195 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.327:0.064,0.545,0.391 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0,0.058,0.942 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|1:1.228:0.001,0.771,0.228 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.009,0.135,0.856 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.497:0.064,0.376,0.56 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.949:0.262,0.526,0.211 0|0:0.05:0.95,0.05,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.834:0.022,0.121,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.997,0.003,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.013,0.164,0.823 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.876,0.107,0.018 0|0:0:1,0,0 1|0:0.649:0.447,0.457,0.096 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18524055 SNP-3.18522836. C A . PASS AR2=0.913;DR2=0.937;AF=0.416 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.156:0.845,0.154,0.001 0|0:0.149:0.853,0.145,0.002 0|0:0.431:0.62,0.328,0.051 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.82:0.259,0.662,0.079 0|0:0.01:0.99,0.01,0 0|0:0.301:0.7,0.299,0.001 0|0:0.116:0.889,0.107,0.005 1|1:2:0,0,1 0|0:0.217:0.784,0.216,0.001 0|0:0.04:0.961,0.037,0.002 1|1:1.915:0.005,0.076,0.92 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.001 0|0:0.958:0.343,0.356,0.301 1|0:0.591:0.483,0.443,0.074 0|0:0:1,0,0 0|0:0.051:0.95,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.406:0.635,0.324,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0.149:0.864,0.123,0.013 0|0:0:1,0,0 0|0:0.326:0.71,0.253,0.036 0|0:0.291:0.754,0.201,0.045 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0.002:0.998,0.002,0 0|0:0.007:0.993,0.007,0 0|0:0.063:0.938,0.06,0.001 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.769:0.392,0.447,0.161 0|0:0:1,0,0 0|0:0.224:0.794,0.187,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.029:0.971,0.029,0 0|0:0.142:0.865,0.127,0.008 0|0:0.036:0.965,0.034,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.001,0.079,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.491:0.083,0.343,0.574 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.427:0.109,0.355,0.536 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.455:0.633,0.279,0.088 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.855:0.01,0.125,0.865 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.608:0.504,0.384,0.112 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.76,0.24,0 0|0:0:1,0,0 1|1:1.376:0.1,0.424,0.476 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.281:0.74,0.239,0.021 0|0:0.248:0.77,0.212,0.018 0|0:0:1,0,0 0|0:0.278:0.741,0.24,0.019 0|0:0:1,0,0 0|0:0.223:0.78,0.216,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.392:0.636,0.335,0.029 1|1:1.399:0.093,0.415,0.492 1|1:2:0,0,1 0|0:0.391:0.641,0.326,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.387:0.651,0.312,0.038 0|0:0.507:0.547,0.399,0.054 0|0:0.321:0.684,0.31,0.006 0|1:0.659:0.41,0.521,0.069 0|0:0.512:0.549,0.39,0.061 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.238:0.773,0.216,0.011 0|0:0.518:0.562,0.359,0.08 0|1:1.229:0.101,0.568,0.331 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.686:0.046,0.222,0.732 1|1:2:0,0,1 1|1:1.45:0.083,0.384,0.533 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.194:0.815,0.175,0.009 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.798,0.184,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.129:0.271,0.329,0.4 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.734,0.248,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:1.15:0.19,0.469,0.34 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 +3 18529021 SNP-3.18527802. C A . PASS AR2=0.994;DR2=0.995;AF=0.462 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.006,0.089,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.432:0.568,0.432,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.005,0.071,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.986:0.015,0.984,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.873,0.121,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.083:0.917,0.083,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:1.971:0.001,0.027,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.882,0.108,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.929,0.071,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.006,0.102,0.892 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18530324 SNP-3.18529105. A G . PASS AR2=1;DR2=1;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18530788 SNP-3.18529569. C A . PASS AR2=0.992;DR2=0.994;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.696:0.028,0.249,0.724 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.951,0.049,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.28:0.768,0.185,0.048 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.357:0.025,0.592,0.382 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 +3 18531959 SNP-3.18530740. A G . PASS AR2=0.999;DR2=1;AF=0.449 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.868:0,0.131,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18533769 SNP-3.18532550. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18535113 SNP-3.18533894. C A . PASS AR2=0.965;DR2=0.976;AF=0.416 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.893:0.004,0.098,0.897 1|1:1.605:0.019,0.357,0.624 1|1:1.692:0.045,0.218,0.737 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.413:0.086,0.415,0.499 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.49:0.07,0.371,0.559 0|1:1.496:0.069,0.366,0.565 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:1.847:0.001,0.151,0.848 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.86:0.003,0.134,0.863 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.815:0.01,0.166,0.824 0|0:0:1,0,0 1|1:1.867:0.004,0.125,0.871 1|1:1.44:0.105,0.351,0.544 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.676:0.013,0.297,0.689 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.476:0.073,0.379,0.548 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.004,0.154,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.003,0.192,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.948:0.001,0.051,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|0:1.371:0.093,0.442,0.465 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.038,0.962 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.458:0.076,0.391,0.534 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.976,0.023,0.001 0|0:0:1,0,0 0|1:1.483:0.068,0.38,0.552 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.006,0.148,0.845 0|0:0:1,0,0 +3 18535365 SNP-3.18534146. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18542604 SNP-3.18541385. C A . PASS AR2=0.974;DR2=0.982;AF=0.305 GT:DS:GP 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.608:0.043,0.307,0.65 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.604:0.058,0.279,0.662 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.438:0.042,0.478,0.48 1|0:1:0,1,0 1|0:0.937:0.131,0.801,0.068 0|1:1.59:0.017,0.376,0.607 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.002,0.073,0.925 0|0:0:1,0,0 1|1:1.632:0.035,0.298,0.667 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.86:0.008,0.123,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.579:0.042,0.337,0.621 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.258:0.176,0.39,0.434 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.656:0.03,0.285,0.685 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.903:0.004,0.09,0.907 1|1:2:0,0,1 1|1:1.822:0.009,0.16,0.831 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.009,0.13,0.86 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18543348 SNP-3.18542129. C A . PASS AR2=0.993;DR2=0.995;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.548:0.035,0.382,0.583 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.5:0.075,0.35,0.575 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.158:0.843,0.157,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.001,0.096,0.904 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.908:0.004,0.085,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.003,0.07,0.927 0|0:0:1,0,0 +3 18544639 SNP-3.18543420. C A . PASS AR2=0.996;DR2=0.997;AF=0.371 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.186:0.829,0.156,0.015 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.836,0.157,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.439:0.561,0.439,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18545523 SNP-3.18544304. C A . PASS AR2=0.999;DR2=0.999;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.06:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18548077 SNP-3.18546858. C A . PASS AR2=0.999;DR2=0.999;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.087:0.914,0.084,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18548882 SNP-3.18547663. C A . PASS AR2=0.969;DR2=0.976;AF=0.41 GT:DS:GP 0|0:0.096:0.906,0.092,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.307:0.694,0.305,0.001 0|0:0.101:0.904,0.091,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.216:0.784,0.215,0 0|0:0.51:0.535,0.421,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.797,0.193,0.01 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.398:0.621,0.36,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:0.474:0.529,0.468,0.003 0|0:0:1,0,0 0|0:0.176:0.831,0.163,0.006 0|0:0.14:0.866,0.129,0.006 0|0:0.327:0.69,0.293,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.229:0.787,0.196,0.017 1|1:2:0,0,1 0|0:0.152:0.858,0.132,0.01 1|1:2:0,0,1 0|0:0.289:0.732,0.247,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.848,0.149,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.742,0.207,0.051 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.783,0.205,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.295:0.727,0.251,0.022 0|1:1:0,1,0 0|0:0.896:0.317,0.471,0.212 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.299:0.723,0.254,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.821,0.17,0.009 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.267:0.751,0.231,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18549767 SNP-3.18548548. C A . PASS AR2=0.953;DR2=0.966;AF=0.446 GT:DS:GP 0|0:0.323:0.703,0.271,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.908,0.091,0.001 0|0:0:1,0,0 0|0:0.535:0.513,0.44,0.047 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.193:0.815,0.176,0.009 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.265:0.736,0.264,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.359:0.673,0.295,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.782,0.197,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.675,0.288,0.037 0|1:0.424:0.609,0.358,0.033 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.98:0.022,0.977,0.001 0|0:0:1,0,0 0|0:0.329:0.693,0.285,0.022 0|0:0.312:0.718,0.253,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.549:0.531,0.39,0.08 0|0:0.355:0.677,0.29,0.032 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.602,0.346,0.052 0|1:0.564:0.498,0.44,0.062 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.661:0.445,0.449,0.106 0|0:0.345:0.687,0.282,0.031 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.417:0.628,0.327,0.045 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.44:0.61,0.341,0.05 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.424:0.622,0.332,0.046 0|0:0.434:0.616,0.334,0.05 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.059:0.941,0.058,0.001 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.006,0.993 0|0:0.451:0.599,0.351,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.28:0.741,0.238,0.021 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.34:0.688,0.284,0.028 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.239:0.781,0.198,0.021 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18550008 SNP-3.18548789. A G . PASS AR2=0.955;DR2=0.967;AF=0.463 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.083:0.92,0.077,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.681:0.026,0.267,0.707 1|0:1:0,1,0 1|1:1.824:0.009,0.158,0.833 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.215:0.119,0.548,0.334 0|1:0.988:0.014,0.984,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.14:0.866,0.129,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.371:0.633,0.364,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.003,0.064,0.933 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.601:0.035,0.328,0.637 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.116:0.161,0.563,0.277 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.545:0.055,0.345,0.6 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.054:0.947,0.053,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.655:0.027,0.292,0.682 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.045:0.313,0.33,0.357 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.217:0.827,0.129,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.028,0.273,0.699 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.034:0.968,0.031,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.02,0.185,0.795 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.509:0.053,0.385,0.562 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.58:0.039,0.343,0.618 0|0:0.214:0.786,0.213,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.592:0.04,0.328,0.632 1|1:1.719:0.02,0.242,0.739 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 1|1:1.688:0.025,0.262,0.713 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 0|0:0.086:0.916,0.081,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.02,0.263,0.717 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.729:0.019,0.233,0.748 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:1.922:0.004,0.07,0.926 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.888:0.005,0.102,0.893 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.003,0.061,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.677:0.027,0.27,0.703 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0,0.062,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.005,0.053,0.942 0|0:0:1,0,0 1|1:1.925:0.003,0.069,0.928 +3 18550225 SNP-3.18549006. C A . PASS AR2=0.978;DR2=0.983;AF=0.303 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.556:0.066,0.311,0.622 0|0:0:1,0,0 0|0:0.277:0.749,0.225,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.968:0.038,0.955,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.59:0.026,0.359,0.615 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.952:0.111,0.826,0.063 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.623:0.053,0.271,0.676 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.004,0.16,0.835 1|0:0.83:0.321,0.529,0.15 1|1:1.936:0.001,0.061,0.937 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.57:0.017,0.395,0.587 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.827:0.011,0.15,0.839 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.775:0.005,0.214,0.78 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.004,0.075,0.922 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.001,0.084,0.915 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.436:0.082,0.401,0.517 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18552549 SNP-3.18551330. C A . PASS AR2=0.944;DR2=0.956;AF=0.318 GT:DS:GP 0|0:0:1,0,0 1|0:0.724:0.349,0.578,0.073 0|0:0.059:0.942,0.056,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.607:0.038,0.317,0.645 0|1:0.627:0.429,0.515,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.944,0.054,0.001 1|1:1.637:0.036,0.291,0.673 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.793,0.189,0.018 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0.332:0.682,0.304,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.825,0.169,0.006 1|1:1.843:0.01,0.137,0.853 1|1:2:0,0,1 1|1:1.814:0.016,0.153,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.494:0.089,0.329,0.583 1|1:1.502:0.062,0.374,0.564 1|0:1.482:0.045,0.429,0.527 1|1:1.622:0.03,0.319,0.651 1|1:1.361:0.105,0.429,0.466 1|1:1.697:0.018,0.267,0.715 1|1:1.595:0.038,0.328,0.634 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0,0.167,0.833 1|1:1.611:0.042,0.304,0.654 0|0:0:1,0,0 1|1:1.662:0.028,0.283,0.689 0|0:0:1,0,0 1|1:1.817:0.008,0.167,0.825 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.852,0.14,0.008 0|0:0:1,0,0 1|1:1.079:0.206,0.508,0.286 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.699:0.027,0.247,0.726 1|1:1.748:0.018,0.217,0.765 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.889:0.001,0.109,0.89 0|1:1.265:0.08,0.575,0.345 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.885:0.002,0.112,0.886 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.014,0.167,0.819 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.016,0.209,0.775 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.272:0.146,0.437,0.418 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.014,0.169,0.818 0|0:0:1,0,0 1|1:1.858:0.005,0.131,0.863 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.821:0.011,0.157,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.029,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18555016 SNP-3.18553797. C A . PASS AR2=0.99;DR2=0.991;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.003,0.081,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.023:0.002,0.973,0.025 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.911:0.003,0.082,0.914 1|1:1.776:0.016,0.192,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.006,0.137,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.003,0.06,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.867:0.005,0.124,0.871 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.006,0.141,0.853 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.62:0.024,0.332,0.644 1|1:2:0,0,1 1|1:1.978:0.001,0.021,0.978 1|1:1.851:0.006,0.137,0.857 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.001,0.082,0.917 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.904:0.003,0.09,0.907 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.934:0.003,0.061,0.936 1|1:1.904:0.003,0.09,0.907 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.006,0.135,0.86 0|0:0:1,0,0 +3 18555796 SNP-3.18554577. C A . PASS AR2=0.992;DR2=0.994;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.001,0.108,0.891 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.003,0.119,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.945:0.001,0.054,0.945 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.726:0.018,0.238,0.744 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.001,0.079,0.92 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.338:0.118,0.426,0.456 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18556230 SNP-3.18555011. C A . PASS AR2=0.99;DR2=0.992;AF=0.348 GT:DS:GP 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.714:0.029,0.228,0.743 0|0:0:1,0,0 1|1:1.9:0.005,0.089,0.906 0|1:1.297:0.114,0.474,0.411 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.045,0.954 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.965 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.644:0.051,0.255,0.694 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.684:0.356,0.605,0.039 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.083,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.004,0.995 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.964:0.001,0.035,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 +3 18558573 SNP-3.18557354. C A . PASS AR2=0.997;DR2=0.998;AF=0.468 GT:DS:GP 0|0:0.01:0.99,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:1.948:0,0.052,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.304:0.723,0.249,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.021:0.028,0.924,0.049 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.001,0.095,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18558627 SNP-3.18557408. A G . PASS AR2=0.984;DR2=0.987;AF=0.213 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.281:0.754,0.211,0.035 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.935,0.062,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.137:0.868,0.127,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.517:0.071,0.341,0.588 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.1,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.809,0.178,0.014 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.151:0.854,0.14,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.013,0.147,0.84 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 0|0:0:1,0,0 1|1:1.948:0.002,0.048,0.95 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.913,0.078,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18559120 SNP-3.18557901. C A . PASS AR2=0.99;DR2=0.992;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.77:0.01,0.21,0.78 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.007,0.252,0.742 1|1:1.761:0.003,0.232,0.764 1|1:2:0,0,1 1|1:1.677:0.008,0.308,0.685 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.716:0.005,0.275,0.721 1|1:2:0,0,1 1|1:1.903:0.002,0.092,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.889:0.014,0.083,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.014,0.078,0.909 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.012,0.146,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.858:0.001,0.14,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 18559268 SNP-3.18558049. C A . PASS AR2=0.922;DR2=0.948;AF=0.237 GT:DS:GP 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.466:0.072,0.391,0.537 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.348:0.106,0.439,0.454 0|0:0:1,0,0 1|1:1.462:0.073,0.392,0.535 0|0:0:1,0,0 1|0:1.368:0.1,0.432,0.468 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.35:0.106,0.438,0.456 0|1:1.351:0.106,0.438,0.456 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.503:0.067,0.363,0.57 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.011:0.195,0.599,0.206 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.477:0.069,0.385,0.546 1|0:1.447:0.077,0.399,0.524 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.595:0.053,0.299,0.648 1|1:2:0,0,1 1|0:1.367:0.1,0.433,0.467 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.071:0.213,0.503,0.284 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.421:0.086,0.408,0.507 1|1:2:0,0,1 1|1:1.515:0.063,0.359,0.578 1|0:1:0,1,0 1|1:1.485:0.066,0.382,0.552 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.371:0.099,0.431,0.47 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 18561310 SNP-3.18560091. C A . PASS AR2=0.997;DR2=0.997;AF=0.363 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.104,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.906,0.091,0.002 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.054:0.947,0.053,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.082,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18561974 SNP-3.18560755. C A . PASS AR2=0.984;DR2=0.986;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.17:0.837,0.156,0.007 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.146:0.859,0.135,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.138:0.867,0.129,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.027:0.973,0.027,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.834,0.159,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.001 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.907,0.09,0.002 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.834,0.159,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.067:0.934,0.065,0.001 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0,0.088,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0,0.234,0.765 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0,0.248,0.752 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.608:0.035,0.322,0.643 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.078,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.834,0.159,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.145,0.006 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0.091:0.911,0.087,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0.092:0.91,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18564453 SNP-3.18563234. C A . PASS AR2=0.969;DR2=0.973;AF=0.398 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.217:0.794,0.194,0.012 1|1:2:0,0,1 0|0:0.208:0.802,0.187,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.246:0.769,0.216,0.015 0|0:0.211:0.8,0.189,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.802,0.187,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.209:0.802,0.187,0.011 0|0:0.256:0.763,0.218,0.019 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.08:0.922,0.076,0.002 0|0:0.065:0.937,0.062,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.803,0.185,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.846,0.149,0.005 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.196:0.813,0.178,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.22:0.793,0.193,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.075:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0.263:0.755,0.228,0.017 0|0:0.103:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.784,0.203,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.207:0.804,0.185,0.011 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.784,0.203,0.013 0|0:0.14:0.862,0.136,0.002 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.209:0.802,0.187,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.224:0.788,0.199,0.013 0|0:0.209:0.802,0.187,0.011 0|0:0.206:0.805,0.184,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.216:0.796,0.192,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.801,0.188,0.011 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.212:0.799,0.189,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.064,0.001 0|0:0.067:0.934,0.065,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.802,0.187,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.802,0.187,0.011 0|0:0.198:0.812,0.177,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.891,0.104,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.242:0.773,0.212,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18564499 SNP-3.18563280. C A . PASS AR2=0.99;DR2=0.992;AF=0.323 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.826:0.007,0.16,0.833 0|1:1:0,1,0 1|1:1.718:0.018,0.247,0.735 0|1:1:0,1,0 1|1:1.657:0.029,0.286,0.685 1|1:1.764:0.015,0.206,0.779 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.014,0.214,0.772 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.76:0.015,0.209,0.776 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.013,0.215,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.008,0.13,0.862 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18568709 SNP-3.18567490. C A . 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C A . PASS AR2=1;DR2=1;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18574632 SNP-3.18573413. C A . PASS AR2=0.976;DR2=0.984;AF=0.306 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.829:0.009,0.152,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.382:0.102,0.414,0.484 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.017,0.243,0.74 1|1:2:0,0,1 1|1:1.738:0.014,0.235,0.752 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1.393:0.065,0.476,0.458 1|1:1.659:0.031,0.278,0.69 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.691:0.021,0.267,0.712 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.691:0.019,0.271,0.71 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.365:0.705,0.225,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.933:0.003,0.061,0.936 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.022,0.218,0.759 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.373:0.125,0.377,0.498 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18574749 SNP-3.18573530. A G . PASS AR2=0.903;DR2=0.911;AF=0.421 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.034:0.234,0.498,0.268 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.741:0.001,0.258,0.741 0|1:0.953:0.273,0.502,0.226 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.028:0.234,0.503,0.263 0|1:1.002:0.251,0.495,0.254 1|1:1.813:0.009,0.168,0.822 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.935:0.282,0.502,0.217 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.934:0.285,0.497,0.218 0|0:0:1,0,0 0|0:0.984:0.258,0.5,0.242 1|0:1.006:0.249,0.495,0.256 1|1:2:0,0,1 1|1:1.031:0.236,0.498,0.266 0|1:1.031:0.236,0.498,0.266 0|0:0:1,0,0 1|0:1.05:0.226,0.498,0.276 0|0:0:1,0,0 0|0:1.007:0.249,0.495,0.256 0|0:0:1,0,0 1|1:1.052:0.225,0.498,0.277 0|0:0:1,0,0 1|1:1.868:0.005,0.122,0.873 1|1:1.606:0.065,0.264,0.671 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.637:0.03,0.302,0.668 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.794:0.008,0.19,0.802 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.85:0.006,0.138,0.856 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.915:0.294,0.496,0.21 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.004,0.155,0.841 1|1:1.805:0.013,0.169,0.818 0|0:0.434:0.617,0.333,0.051 0|0:0:1,0,0 1|0:0.971:0.106,0.816,0.078 1|1:1.814:0.009,0.167,0.823 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0.093:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.831,0.169,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.973:0.265,0.497,0.238 0|0:0:1,0,0 1|1:1.684:0.025,0.267,0.708 0|0:0:1,0,0 1|1:1.887:0.003,0.106,0.891 1|1:2:0,0,1 0|1:0.973:0.265,0.497,0.238 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1.085:0.175,0.564,0.261 1|1:1.79:0.008,0.194,0.798 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.909:0.29,0.511,0.199 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.973:0.265,0.497,0.238 0|1:1.272:0.061,0.605,0.333 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.891,0.109,0 0|0:0:1,0,0 1|0:1.028:0.236,0.499,0.264 0|0:0:1,0,0 1|1:1.052:0.225,0.498,0.277 1|0:1.028:0.236,0.499,0.264 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.982:0.261,0.496,0.243 1|0:1.028:0.237,0.499,0.264 1|1:2:0,0,1 0|1:1.052:0.225,0.498,0.277 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.731:0.016,0.238,0.746 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.032:0.234,0.499,0.267 0|0:0:1,0,0 0|1:0.926:0.307,0.461,0.233 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|0:0.857:0.329,0.486,0.186 0|0:0.786:0.461,0.292,0.247 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.03:0.236,0.498,0.266 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.751:0.05,0.15,0.8 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.049,0.145,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.052:0.225,0.498,0.277 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18575195 SNP-3.18573976. A G . PASS AR2=0.996;DR2=0.996;AF=0.235 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.893:0.107,0.893,0 1|0:1.056:0.1,0.745,0.156 1|1:2:0,0,1 1|1:1.852:0.005,0.138,0.857 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.94:0.002,0.057,0.942 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.004,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18578550 SNP-3.18577331. A G . PASS AR2=0.928;DR2=0.942;AF=0.392 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.519:0.058,0.364,0.578 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.313:0.123,0.441,0.436 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.206:0.158,0.478,0.364 1|1:1.17:0.172,0.485,0.343 1|0:1.17:0.172,0.485,0.343 0|1:1.148:0.183,0.486,0.331 1|0:1.264:0.142,0.453,0.406 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.002,0.052,0.946 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.437:0.075,0.413,0.512 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.56:0.046,0.347,0.606 0|1:1.571:0.049,0.331,0.62 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.58:0.048,0.325,0.627 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.392:0.118,0.372,0.51 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.199:0.16,0.48,0.36 0|0:0:1,0,0 1|1:1.934:0.002,0.062,0.936 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.582:0.019,0.38,0.601 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|1:0.968:0.285,0.462,0.253 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.46:0.542,0.456,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.456:0.075,0.394,0.531 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.196:0.162,0.481,0.357 0|0:0:1,0,0 0|1:1.148:0.183,0.486,0.331 1|0:1.126:0.19,0.494,0.316 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.168:0.175,0.483,0.343 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.492:0.065,0.377,0.558 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.148:0.183,0.486,0.331 0|1:1.172:0.172,0.485,0.344 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.196:0.162,0.481,0.358 1|0:1.148:0.183,0.486,0.331 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.615:0.037,0.311,0.652 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18578564 SNP-3.18577345. A G . PASS AR2=0.847;DR2=0.878;AF=0.242 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.527:0.547,0.379,0.074 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.733:0.402,0.464,0.134 1|1:2:0,0,1 0|1:0.902:0.305,0.487,0.208 0|0:0:1,0,0 1|0:1.043:0.229,0.498,0.272 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.424:0.625,0.327,0.048 1|1:2:0,0,1 1|0:0.963:0.265,0.506,0.228 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.046:0.228,0.498,0.274 1|0:1.023:0.239,0.5,0.262 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.052:0.225,0.498,0.277 0|1:0.855:0.326,0.492,0.182 1|1:2:0,0,1 0|0:0.694:0.422,0.462,0.116 1|0:0.434:0.619,0.327,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.71:0.416,0.458,0.126 0|0:0:1,0,0 0|1:0.721:0.409,0.461,0.13 1|1:2:0,0,1 1|0:0.76:0.385,0.47,0.145 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.76:0.385,0.47,0.145 1|1:2:0,0,1 0|0:0.596:0.501,0.402,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.754,0.245,0.001 0|0:0:1,0,0 0|0:0.637:0.475,0.414,0.111 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.798:0.363,0.476,0.161 0|0:0.37:0.659,0.312,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.291:0.728,0.253,0.019 0|0:0:1,0,0 0|0:0.493:0.55,0.408,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.858,0.134,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.647:0.452,0.449,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.781:0.372,0.474,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.779:0.346,0.529,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.806,0.186,0.008 0|0:0.063:0.937,0.062,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.763:0.383,0.471,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.762:0.384,0.471,0.146 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.633:0.466,0.435,0.099 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.05:0.226,0.498,0.276 0|0:0.328:0.686,0.3,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.798,0.19,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.384:0.636,0.343,0.02 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.725:0.407,0.461,0.132 0|0:0.296:0.717,0.271,0.013 0|0:0.478:0.581,0.36,0.059 0|0:0.116:0.887,0.11,0.003 1|1:0.718:0.411,0.46,0.129 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.693:0.426,0.456,0.119 0|0:0:1,0,0 0|0:0.173:0.837,0.154,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.699:0.423,0.454,0.122 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 0|0:0:1,0,0 0|0:0.093:0.909,0.088,0.003 1|1:1.05:0.226,0.498,0.276 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.635:0.471,0.423,0.106 0|0:0:1,0,0 0|1:0.76:0.385,0.47,0.145 0|0:0.182:0.834,0.149,0.017 1|0:1.05:0.226,0.498,0.276 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.527:0.548,0.376,0.075 0|0:0.492:0.572,0.364,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.836,0.155,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.291:0.741,0.227,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.848,0.139,0.013 +3 18578743 SNP-3.18577524. A G . PASS AR2=0.993;DR2=0.994;AF=0.511 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.966:0.001,0.033,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.006,0.187,0.808 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.802:0.01,0.178,0.812 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.745:0.02,0.215,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.842:0.006,0.147,0.847 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.007,0.144,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.006,0.146,0.848 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.972:0.001,0.026,0.973 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18580725 SNP-3.18579506. C A . PASS AR2=0.988;DR2=0.991;AF=0.404 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.497:0.533,0.436,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.136:0.871,0.122,0.007 0|0:0:1,0,0 0|0:0.349:0.68,0.29,0.029 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.066:0.935,0.064,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.134:0.871,0.123,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.073,0.002 0|0:0.16:0.847,0.147,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.083:0.918,0.081,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.181:0.828,0.162,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.883,0.111,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.09:0.913,0.084,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.222:0.79,0.197,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.139:0.867,0.126,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18615582 SNP-3.18614363. A G . PASS AR2=0.985;DR2=0.987;AF=0.24 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.079:0.076,0.77,0.155 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.806,0.194,0 1|1:2:0,0,1 1|1:1.856:0.006,0.133,0.862 1|1:1.876:0.004,0.117,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.009,0.15,0.841 1|1:1.96:0,0.039,0.96 1|1:1.652:0.015,0.319,0.666 0|0:0:1,0,0 1|1:1.916:0.002,0.08,0.918 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 1|1:2:0,0,1 0|0:0.064:0.937,0.062,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.893:0.003,0.101,0.896 0|0:0.097:0.905,0.092,0.002 0|0:0:1,0,0 1|1:1.898:0.002,0.098,0.9 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.062:0.112,0.714,0.174 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.809:0.01,0.171,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.003,0.108,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0.001,0.026,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18617626 SNP-3.18616407. C A . PASS AR2=0.959;DR2=0.968;AF=0.393 GT:DS:GP 0|0:0.122:0.882,0.114,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.94,0.059,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 1|1:1.875:0.004,0.117,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.717,0.272,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.853,0.143,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.777,0.192,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.741,0.252,0.007 0|0:0.465:0.563,0.409,0.028 0|0:0.321:0.69,0.299,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.488:0.555,0.403,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.431:0.6,0.369,0.031 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.43:0.57,0.43,0 0|0:0.546:0.532,0.391,0.078 0|0:0.388:0.619,0.374,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.041,0.958 1|1:2:0,0,1 1|1:1.825:0.006,0.163,0.831 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 1|1:1.922:0.002,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.041,0.958 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.772:0.006,0.217,0.778 1|1:2:0,0,1 1|1:1.879:0.003,0.116,0.881 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.115:0.888,0.108,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.298:0.727,0.247,0.026 1|1:1.93:0.002,0.067,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.001,0.075,0.924 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.963 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.002,0.08,0.918 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 0|0:0.136:0.868,0.128,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.326:0.688,0.298,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.001 0|0:0.44:0.575,0.41,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.909,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.928:0.004,0.064,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.809,0.184,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.88,0.096,0.024 1|1:2:0,0,1 0|0:0.394:0.606,0.393,0.001 0|0:0.232:0.787,0.193,0.02 0|0:0:1,0,0 0|0:0.176:0.843,0.138,0.019 0|0:0.185:0.826,0.162,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.777:0.002,0.218,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 +3 18617856 SNP-3.18616637. C A . PASS AR2=0.972;DR2=0.977;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.016,0.221,0.763 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 1|1:1.709:0.021,0.249,0.73 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.085,0.001 0|0:0.091:0.91,0.09,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.896:0.004,0.096,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.011,0.42,0.569 1|1:1.683:0.024,0.269,0.707 1|1:2:0,0,1 1|1:1.731:0.019,0.232,0.749 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.014,0.202,0.784 1|1:1.774:0.013,0.2,0.787 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.758:0.014,0.214,0.772 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.721:0.02,0.24,0.74 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.727:0.018,0.237,0.745 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.893:0.006,0.095,0.899 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.016,0.223,0.761 0|0:0.071:0.93,0.068,0.002 0|0:0:1,0,0 1|1:1.814:0.013,0.16,0.827 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.777:0.017,0.189,0.794 1|1:2:0,0,1 1|1:1.771:0.015,0.198,0.787 1|1:1.779:0.015,0.19,0.794 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.645:0.065,0.225,0.71 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.847:0.013,0.127,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18618966 SNP-3.18617747. C A . PASS AR2=0.975;DR2=0.982;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.535:0.055,0.355,0.59 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.706:0.027,0.241,0.733 0|0:0:1,0,0 1|1:1.757:0.013,0.218,0.77 1|1:1.587:0.043,0.326,0.63 1|1:2:0,0,1 0|1:1.501:0.039,0.42,0.541 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.449:0.042,0.468,0.49 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.951:0,0.049,0.951 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.703:0.027,0.243,0.73 1|1:1.842:0.01,0.138,0.852 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.602:0.038,0.322,0.64 1|1:1.945:0.002,0.052,0.946 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.012,0.181,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0,0.064,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.679:0.058,0.206,0.736 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.682:0.048,0.222,0.73 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18618983 SNP-3.18617764. A G . PASS AR2=0.989;DR2=0.991;AF=0.206 GT:DS:GP 1|1:1.747:0.017,0.219,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.864:0.005,0.126,0.869 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.854:0.007,0.133,0.861 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.96,0.039,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.687:0.423,0.466,0.11 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.85:0.163,0.825,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.809:0.011,0.169,0.82 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18620936 SNP-3.18619717. A G . PASS AR2=0.927;DR2=0.946;AF=0.221 GT:DS:GP 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:1.448:0.044,0.465,0.492 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.775:0.013,0.199,0.788 0|0:0.431:0.621,0.328,0.052 0|0:0:1,0,0 0|0:0.149:0.857,0.138,0.006 1|1:1.202:0.172,0.454,0.374 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.767:0.014,0.205,0.781 0|0:0.052:0.949,0.051,0 0|0:0.178:0.829,0.165,0.007 0|1:1.296:0.065,0.575,0.36 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.638:0.479,0.405,0.116 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.48:0.048,0.425,0.527 1|1:2:0,0,1 0|1:1.521:0.043,0.393,0.564 1|1:1.673:0.026,0.276,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0.144:0.857,0.143,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0.259:0.751,0.24,0.009 0|0:0.07:0.931,0.069,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0.135:0.87,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.705,0.258,0.037 0|0:0:1,0,0 1|0:0.508:0.499,0.495,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.036,0.259,0.706 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.358:0.674,0.294,0.032 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.858,0.139,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.448:0.607,0.339,0.054 0|0:0:1,0,0 0|0:0.315:0.706,0.272,0.022 0|0:0:1,0,0 0|1:0.513:0.512,0.464,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.741:0.017,0.225,0.758 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 1|1:1.766:0.014,0.206,0.78 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.765:0.014,0.207,0.779 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.913,0.085,0.001 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.903,0.096,0.001 1|1:1.655:0.029,0.288,0.683 1|1:2:0,0,1 1|1:1.768:0.014,0.204,0.782 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.14:0.87,0.121,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.014,0.209,0.777 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.767:0.014,0.205,0.781 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.768:0.016,0.201,0.783 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 +3 18621127 SNP-3.18619908. A G . PASS AR2=0.93;DR2=0.946;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.407:0.642,0.309,0.049 0|0:0.011:0.989,0.011,0 0|0:0.126:0.878,0.118,0.004 0|1:0.701:0.398,0.504,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.839,0.155,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.272:0.747,0.234,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.763,0.221,0.016 0|0:0.249:0.765,0.22,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.432:0.593,0.382,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.879,0.117,0.005 0|0:0.016:0.984,0.016,0 0|0:0.367:0.65,0.332,0.018 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.114:0.212,0.462,0.326 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.068:0.933,0.065,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.494:0.571,0.364,0.065 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.695,0.276,0.029 0|0:0:1,0,0 0|0:0.134:0.871,0.125,0.005 0|0:0.027:0.973,0.027,0 0|0:0.007:0.993,0.007,0 1|1:1.564:0.056,0.324,0.62 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.614:0.035,0.316,0.649 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|0:0.009:0.991,0.009,0 0|0:0.447:0.612,0.33,0.059 0|0:0.022:0.978,0.022,0 0|0:0.294:0.725,0.256,0.019 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.004:0.996,0.004,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.918:0,0.081,0.918 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.266:0.752,0.231,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.1:0.9,0.1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.316:0.708,0.269,0.024 0|0:0:1,0,0 0|0:0.566:0.509,0.417,0.075 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.254:0.764,0.219,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.692:0.425,0.457,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.771,0.226,0.003 0|0:0.112:0.892,0.104,0.004 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.008:0.992,0.008,0 0|0:0.049:0.952,0.047,0.001 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.795,0.193,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0.786:0.381,0.452,0.167 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.808:0.368,0.457,0.175 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.799,0.189,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.843:0.008,0.142,0.85 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18622401 SNP-3.18621182. C A . PASS AR2=0.988;DR2=0.99;AF=0.38 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.891:0.004,0.101,0.895 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.104:0.898,0.1,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.135:0.868,0.129,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.819,0.172,0.009 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.373:0.659,0.31,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.874:0.008,0.111,0.881 1|1:2:0,0,1 1|1:1.654:0.035,0.276,0.689 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.916,0.082,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.004,0.157,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0.319:0.694,0.293,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.001,0.09,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18623735 SNP-3.18622516. A G . PASS AR2=0.998;DR2=0.998;AF=0.534 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.422:0,0.578,0.422 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.082:0,0.918,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18625404 SNP-3.18624185. A G . PASS AR2=0.981;DR2=0.987;AF=0.217 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.017,0.227,0.756 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.15:0.253,0.345,0.402 1|1:2:0,0,1 1|1:1.795:0.01,0.184,0.806 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.715:0.017,0.252,0.732 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.033,0.241,0.726 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.612:0.038,0.312,0.65 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.78:0.012,0.196,0.792 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18625780 SNP-3.18624561. A G . PASS AR2=0.982;DR2=0.985;AF=0.475 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.759:0.014,0.212,0.774 0|0:0:1,0,0 1|1:1.776:0.014,0.195,0.79 1|1:1.825:0.01,0.155,0.835 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.041:0.959,0.04,0.001 1|1:1.856:0.005,0.134,0.861 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.825:0.008,0.159,0.833 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.793:0.011,0.185,0.804 0|1:1:0,1,0 1|1:1.783:0.012,0.193,0.795 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.006,0.132,0.863 1|1:1.789:0.011,0.188,0.801 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.012,0.205,0.783 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.841:0.159,0.841,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.007,0.197,0.795 1|1:1.789:0.01,0.192,0.799 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.018,0.225,0.757 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.841:0.008,0.144,0.849 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.779:0.012,0.196,0.791 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.009,0.16,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.011,0.183,0.806 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.848:0.011,0.129,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18625896 SNP-3.18624677. C A . PASS AR2=1;DR2=1;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.997:0,0.003,0.997 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18626554 SNP-3.18625335. C A . PASS AR2=0.995;DR2=0.996;AF=0.467 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.069:0.932,0.066,0.002 0|0:0.001:0.999,0.001,0 1|0:0.591:0.41,0.589,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.91:0.004,0.081,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.219:0,0.781,0.219 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.095:0.914,0.076,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.93:0.075,0.919,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18627874 SNP-3.18626655. C A . PASS AR2=0.993;DR2=0.995;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0.001:0.999,0.001,0 0|0:0.426:0.581,0.413,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.279:0.724,0.272,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.006:0.994,0.006,0 0|0:0.085:0.918,0.078,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.933,0.06,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.566:0.434,0.566,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18628603 SNP-3.18627384. C A . PASS AR2=0.986;DR2=0.989;AF=0.46 GT:DS:GP 0|0:0:1,0,0 1|1:1.926:0.001,0.073,0.926 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.465:0.1,0.335,0.565 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.018,0.225,0.757 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.721:0.02,0.239,0.741 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.855:0.006,0.134,0.86 0|0:0:1,0,0 1|1:1.882:0.002,0.114,0.884 1|1:1.771:0.014,0.201,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.069:0.932,0.067,0.001 1|0:1:0,1,0 1|1:1.649:0.025,0.301,0.674 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.325:0.684,0.306,0.009 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.9,0.099,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18629060 SNP-3.18627841. C A . PASS AR2=0.976;DR2=0.983;AF=0.33 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.842:0.007,0.144,0.849 1|1:1.851:0.006,0.138,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.004,0.134,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.011,0.135,0.854 1|1:2:0,0,1 1|0:1.487:0.077,0.36,0.563 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.434:0.064,0.439,0.497 1|1:1.953:0.001,0.046,0.954 1|1:1.895:0.003,0.099,0.898 1|1:1.689:0.017,0.277,0.706 1|1:2:0,0,1 1|0:1.455:0.079,0.387,0.534 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.478:0.008,0.506,0.486 1|1:2:0,0,1 1|1:1.818:0.007,0.168,0.825 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.954:0,0.046,0.954 0|0:0:1,0,0 1|1:1.899:0.001,0.099,0.9 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0,0.083,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.5:0.053,0.394,0.553 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.283:0.74,0.236,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0,0.054,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.042,0.958 0|0:0:1,0,0 +3 18632563 SNP-3.18631344. C A . PASS AR2=0.987;DR2=0.99;AF=0.341 GT:DS:GP 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.453:0.105,0.338,0.557 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.762,0.23,0.008 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.562:0.048,0.342,0.61 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:1.837:0.007,0.149,0.844 1|1:1.741:0.008,0.242,0.749 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0,0.063,0.937 1|1:2:0,0,1 1|1:1.959:0,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.647:0.377,0.6,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.733:0.012,0.243,0.745 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18634358 SNP-3.18633139. A G . PASS AR2=0.975;DR2=0.979;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0.079:0.923,0.076,0.002 0|0:0:1,0,0 0|1:1.063:0.001,0.936,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.964,0.035,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|1:1.446:0,0.554,0.446 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0.09:0.911,0.089,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:0.934:0.114,0.839,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.018:0.073,0.835,0.092 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.246:0.77,0.214,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.991:0.069,0.872,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 1|0:1.074:0.068,0.79,0.142 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.772,0.212,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 1|0:0.912:0.157,0.774,0.069 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.435:0.004,0.557,0.439 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.224:0.777,0.222,0.001 0|0:0.254:0.747,0.252,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.964:0.185,0.666,0.149 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.078:0.922,0.078,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.086:0.919,0.076,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.095:0.908,0.09,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18640611 SNP-3.18639392. C A . PASS AR2=0.999;DR2=0.999;AF=0.473 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.892,0.107,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18645295 SNP-3.18644076. A G . PASS AR2=0.982;DR2=0.987;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.065,0.002 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.661:0.038,0.262,0.699 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.161:0.847,0.146,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.736,0.234,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0.027:0.973,0.027,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.433:0.098,0.371,0.531 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.707:0.006,0.282,0.712 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.806,0.193,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.953,0.046,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18648463 SNP-3.18647244. A G . PASS AR2=0.943;DR2=0.958;AF=0.562 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.8:0.007,0.187,0.806 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.003,0.17,0.827 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 1|1:1.821:0.008,0.163,0.829 0|0:0:1,0,0 1|1:1.54:0.041,0.377,0.581 1|1:2:0,0,1 1|1:1.527:0.038,0.397,0.565 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.62:0.011,0.359,0.63 1|1:2:0,0,1 1|1:1.747:0.013,0.227,0.76 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.798:0.008,0.187,0.805 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.028,0.281,0.691 1|1:1.745:0.006,0.243,0.751 0|0:0:1,0,0 1|1:1.636:0.001,0.363,0.636 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.024,0.249,0.727 0|0:0:1,0,0 1|1:1.848:0.004,0.145,0.851 1|1:1.724:0.009,0.258,0.733 1|1:2:0,0,1 1|1:1.654:0.033,0.279,0.688 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.941 1|1:1.389:0.104,0.403,0.493 1|1:1.739:0.019,0.223,0.758 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0,0.072,0.928 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0.001,0.073,0.926 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.248:0.16,0.431,0.409 1|1:1.87:0.002,0.126,0.872 1|1:1.722:0.005,0.267,0.728 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 1|1:1.552:0.046,0.357,0.597 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.638:0.037,0.288,0.675 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.763:0.017,0.203,0.78 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.478:0.032,0.459,0.51 1|1:1.687:0.023,0.267,0.71 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.389:0.093,0.426,0.482 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.851:0.009,0.13,0.861 1|1:1.967:0,0.032,0.968 1|1:1.616:0.042,0.3,0.658 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.728:0.029,0.215,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 0|1:1.219:0.12,0.541,0.339 1|1:1.827:0.008,0.157,0.835 1|1:2:0,0,1 0|1:1.539:0.056,0.348,0.595 1|1:1.847:0.006,0.14,0.853 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.735:0.02,0.225,0.755 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.511:0.045,0.4,0.555 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.06,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.348:0.126,0.4,0.474 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18649030 SNP-3.18647811. C A . PASS AR2=0.997;DR2=0.997;AF=0.454 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.828:0.009,0.154,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.007,0.085,0.908 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.003,0.079,0.918 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.856:0.004,0.136,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18655483 SNP-3.18654264. C A . PASS AR2=0.938;DR2=0.955;AF=0.439 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.998:0.256,0.489,0.254 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.969:0.266,0.5,0.234 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.794:0.347,0.512,0.141 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.532:0.539,0.389,0.071 1|1:2:0,0,1 0|0:0.951:0.28,0.489,0.231 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.462:0.061,0.416,0.523 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.483:0.126,0.265,0.609 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.509:0.552,0.387,0.061 1|1:1.91:0.002,0.086,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.491:0.59,0.329,0.081 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.832:0.005,0.158,0.837 1|1:2:0,0,1 0|0:0.515:0.544,0.396,0.059 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.553:0.502,0.443,0.055 0|0:0.378:0.669,0.283,0.048 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.481:0.578,0.364,0.059 0|0:0.603:0.488,0.42,0.092 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.001:0.255,0.49,0.255 0|0:0:1,0,0 0|0:0.265:0.759,0.217,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.915:0,0.085,0.915 1|1:2:0,0,1 0|0:0.468:0.589,0.355,0.056 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.264:0.754,0.229,0.018 0|0:0.754:0.358,0.53,0.112 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.514:0.545,0.396,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.911:0.302,0.485,0.213 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.173:0.837,0.153,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.661,0.303,0.036 0|0:0:1,0,0 0|0:0.53:0.541,0.388,0.071 0|0:0.588:0.49,0.432,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.309:0.716,0.26,0.024 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18655739 SNP-3.18654520. A G . PASS AR2=0.864;DR2=0.892;AF=0.308 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.822:0.347,0.484,0.169 1|1:1.765:0.004,0.226,0.77 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.365:0.677,0.282,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.349:0.116,0.419,0.465 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.541:0.53,0.4,0.07 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.78:0.373,0.475,0.152 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.422:0.614,0.35,0.036 0|1:0.939:0.279,0.502,0.218 0|1:0.749:0.396,0.458,0.145 0|1:1.423:0.018,0.54,0.441 0|0:0:1,0,0 0|1:1.102:0.065,0.768,0.167 0|0:0:1,0,0 1|0:0.814:0.344,0.499,0.158 0|1:1.267:0.113,0.508,0.38 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.092:0.193,0.521,0.286 0|0:0.574:0.526,0.374,0.1 1|1:1.64:0.043,0.274,0.683 1|1:0.878:0.316,0.49,0.194 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.774:0.015,0.195,0.789 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.364:0.061,0.513,0.426 0|0:0:1,0,0 1|1:1.967:0.001,0.031,0.968 1|1:1.742:0.003,0.253,0.745 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.157:0.174,0.495,0.331 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.086,0.912 1|1:1.657:0.056,0.231,0.713 1|1:2:0,0,1 0|0:0.761:0.398,0.444,0.158 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.282:0.116,0.485,0.398 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.477:0.03,0.462,0.507 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.062:0.191,0.555,0.254 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.08:0.21,0.499,0.291 0|0:0:1,0,0 1|1:1.577:0.04,0.343,0.617 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.525:0.532,0.41,0.058 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.124:0.137,0.601,0.261 0|0:0.526:0.546,0.382,0.072 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.39:0.078,0.455,0.467 0|0:0:1,0,0 1|1:1.91:0.005,0.079,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.059:0.221,0.498,0.281 0|0:0.725:0.407,0.46,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.945:0.247,0.56,0.192 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.723:0.411,0.455,0.134 1|1:2:0,0,1 0|1:1.321:0.125,0.428,0.447 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.467:0.597,0.339,0.064 0|0:0.805:0.356,0.484,0.161 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.117:0.18,0.523,0.297 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.163:0.178,0.481,0.341 1|1:1.41:0.072,0.447,0.482 0|1:0.75:0.402,0.447,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.428:0.616,0.34,0.044 0|0:0.588:0.499,0.414,0.087 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.994:0.254,0.499,0.247 1|1:2:0,0,1 0|0:0.782:0.371,0.476,0.153 0|0:0.737:0.4,0.464,0.136 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.005,0.076,0.919 1|1:2:0,0,1 1|1:1.573:0.088,0.251,0.661 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.038:0.227,0.508,0.265 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.128:0.168,0.535,0.297 0|0:0:1,0,0 1|1:1.953:0.001,0.044,0.955 +3 18658396 SNP-3.18657177. A G . PASS AR2=0.924;DR2=0.941;AF=0.456 GT:DS:GP 1|1:1.872:0.006,0.116,0.878 0|0:0:1,0,0 0|1:0.926:0.3,0.473,0.226 0|0:0:1,0,0 1|1:1.735:0.018,0.229,0.753 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.018,0.204,0.778 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.597:0.023,0.356,0.62 0|0:0:1,0,0 1|1:1.964:0,0.035,0.965 1|1:1.845:0.006,0.143,0.851 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.685:0.02,0.275,0.705 1|1:1.147:0.163,0.527,0.31 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.247:0.138,0.477,0.385 1|1:2:0,0,1 1|1:1.642:0.033,0.292,0.675 1|0:1.513:0.065,0.357,0.578 1|0:1.002:0.256,0.486,0.258 1|1:1.527:0.056,0.361,0.583 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.618:0.033,0.316,0.651 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.404:0.091,0.415,0.495 1|1:1.806:0.01,0.175,0.815 0|0:0:1,0,0 1|1:1.554:0.051,0.345,0.604 1|1:1.848:0.004,0.145,0.851 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.505:0.064,0.367,0.569 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.035,0.964 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.893:0.287,0.533,0.18 1|1:1.424:0.089,0.398,0.513 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0,0.066,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.372:0.099,0.43,0.471 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.743:0.02,0.217,0.763 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.633:0.038,0.292,0.67 0|0:0:1,0,0 1|1:1.809:0.006,0.18,0.814 1|1:1.273:0.125,0.477,0.398 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.88:0.002,0.116,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.753:0.016,0.216,0.768 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.75:0.016,0.218,0.766 0|1:1.579:0.026,0.369,0.605 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.937:0.302,0.458,0.24 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.588:0.011,0.391,0.599 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.651:0.031,0.286,0.683 1|1:2:0,0,1 1|1:1.572:0.046,0.336,0.618 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.226:0.151,0.473,0.376 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.592:0.044,0.321,0.636 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.592:0.044,0.321,0.636 1|1:1.649:0.032,0.287,0.681 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.433:0.087,0.393,0.52 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.718:0.021,0.24,0.739 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.013,0.077,0.91 1|1:1.421:0.089,0.401,0.51 0|0:0:1,0,0 1|1:2:0,0,1 +3 18659416 SNP-3.18658197. A G . PASS AR2=0.993;DR2=0.994;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.864,0.129,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.838,0.148,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 0|0:0.358:0.654,0.335,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.827,0.17,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18662162 SNP-3.18660943. C A . PASS AR2=0.995;DR2=0.996;AF=0.373 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.826,0.165,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.211:0.8,0.189,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.206:0.808,0.178,0.014 0|0:0.157:0.849,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18662402 SNP-3.18661183. A G . PASS AR2=0.996;DR2=0.996;AF=0.523 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.898:0.005,0.092,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.003,0.129,0.868 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.002,0.055,0.944 1|1:1.995:0,0.005,0.995 1|1:1.996:0,0.004,0.996 1|1:1.985:0,0.014,0.985 0|0:0:1,0,0 1|1:1.878:0.003,0.116,0.881 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.919:0.002,0.076,0.922 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.956 +3 18664428 SNP-3.18663209. A G . PASS AR2=0.938;DR2=0.952;AF=0.464 GT:DS:GP 1|1:1.799:0.014,0.174,0.813 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.121:0.194,0.49,0.315 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.261:0.058,0.622,0.319 1|1:1.634:0.033,0.3,0.667 1|1:1.607:0.042,0.309,0.649 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.401:0.062,0.475,0.463 1|1:1.826:0.007,0.16,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.007,0.146,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.005,0.108,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.565:0.046,0.343,0.611 1|1:1.321:0.12,0.439,0.441 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.391:0.013,0.582,0.404 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.705:0.016,0.263,0.721 1|1:1.899:0.001,0.1,0.899 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.603:0.029,0.34,0.632 1|1:2:0,0,1 1|1:1.849:0.006,0.139,0.855 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.846:0.006,0.142,0.852 1|1:1.882:0.004,0.11,0.886 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.915:0.001,0.083,0.916 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.656:0.039,0.266,0.695 1|1:1.923:0.001,0.074,0.924 1|1:1.914:0.001,0.083,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.795,0.196,0.009 0|0:0:1,0,0 1|1:1.878:0.002,0.117,0.881 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.528:0.5,0.473,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.089,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.565:0.046,0.343,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.745,0.247,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.007,0.135,0.858 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.004,0.135,0.86 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.766:0.011,0.212,0.777 0|0:0:1,0,0 1|1:1.897:0.004,0.096,0.901 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.825:0.01,0.156,0.835 1|1:2:0,0,1 1|1:1.34:0.1,0.46,0.44 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.122:0.194,0.49,0.316 0|0:0:1,0,0 1|1:1.798:0.012,0.179,0.81 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.888:0.001,0.11,0.889 1|1:2:0,0,1 0|0:0.066:0.935,0.065,0.001 1|1:1.825:0.009,0.157,0.834 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.423:0.08,0.417,0.503 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.492:0.041,0.425,0.533 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.897,0.103,0 1|1:2:0,0,1 1|1:1.571:0.039,0.35,0.611 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.007,0.136,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.013,0.139,0.848 1|1:2:0,0,1 1|0:1.491:0.066,0.377,0.557 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.008,0.068,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0,0.09,0.91 0|1:1.109:0.198,0.495,0.307 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.224:0.152,0.472,0.376 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 +3 18667112 SNP-3.18665893. C A . PASS AR2=0.998;DR2=0.998;AF=0.462 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.746:0,0.254,0.746 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.002,0.095,0.903 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.827:0.013,0.146,0.841 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18667892 SNP-3.18666673. A G . PASS AR2=1;DR2=1;AF=0.245 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18668534 SNP-3.18667315. C A . PASS AR2=0.998;DR2=0.999;AF=0.358 GT:DS:GP 0|0:0.045:0.956,0.044,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0,0.09,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18672293 SNP-3.18671074. C A . PASS AR2=0.992;DR2=0.993;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.868,0.132,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.154:0.852,0.142,0.006 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.864,0.129,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.032:0.969,0.031,0 0|0:0.154:0.857,0.133,0.01 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.794,0.195,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.859,0.136,0.005 0|0:0.047:0.953,0.046,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.096,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 +3 18672970 SNP-3.18671751. C A . PASS AR2=1;DR2=1;AF=0.36 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18673545 SNP-3.18672326. A G . PASS AR2=0.992;DR2=0.993;AF=0.213 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.92:0.002,0.077,0.921 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.001,0.074,0.925 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.851,0.143,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.875,0.12,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 0|0:0.17:0.839,0.153,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.727,0.254,0.019 0|0:0.022:0.979,0.021,0.001 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18675080 SNP-3.18673861. C A . PASS AR2=0.993;DR2=0.993;AF=0.338 GT:DS:GP 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.954 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.001,0.076,0.923 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.002,0.094,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.946:0,0.054,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 1|1:1.913:0.001,0.085,0.914 1|1:1.957:0.001,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.927:0.002,0.07,0.928 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:1.931:0.001,0.067,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.001,0.079,0.92 1|1:1.964:0,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.984:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.799:0.317,0.568,0.115 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.099,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18675738 SNP-3.18674519. C A . PASS AR2=0.999;DR2=0.999;AF=0.364 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.066,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18681590 SNP-3.18680349. A G . PASS AR2=0.993;DR2=0.994;AF=0.222 GT:DS:GP 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.943,0.057,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.059:0.941,0.059,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.868,0.121,0.011 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.947,0.051,0.001 0|0:0:1,0,0 0|0:0.26:0.762,0.216,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 18683390 SNP-3.18682149. C A . PASS AR2=0.988;DR2=0.99;AF=0.421 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.224:0.789,0.199,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.121:0.004,0.871,0.125 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.21:0.802,0.187,0.011 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.306:0.725,0.244,0.031 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.187:0.822,0.169,0.009 0|0:0.186:0.823,0.169,0.009 1|0:1:0,1,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.323:0.705,0.268,0.027 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.058:0.944,0.054,0.002 1|1:2:0,0,1 0|0:0:1,0,0 +3 18683411 SNP-3.18682170. C A . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18687173 SNP-3.18685932. C A . PASS AR2=0.994;DR2=0.994;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.002,0.114,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.882:0.005,0.108,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.9:0.122,0.855,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.925:0.102,0.871,0.027 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.688:0.006,0.3,0.694 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.946 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.003,0.106,0.891 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.892:0.002,0.105,0.894 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.832:0.007,0.154,0.839 0|0:0:1,0,0 +3 18687536 SNP-3.18686295. A G . PASS AR2=0.984;DR2=0.988;AF=0.303 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.84,0.153,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.405:0.601,0.394,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.254:0.765,0.217,0.018 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.171:0.838,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.576:0.493,0.438,0.069 0|0:0.377:0.644,0.335,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.809,0.18,0.012 0|0:0.169:0.838,0.155,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.349:0.684,0.282,0.033 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 18688918 SNP-3.18687677. C A . PASS AR2=0.971;DR2=0.976;AF=0.374 GT:DS:GP 0|0:0.293:0.729,0.25,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.301:0.719,0.261,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0.082:0.919,0.08,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 0|0:0.093:0.91,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.604,0.344,0.052 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.841,0.156,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.148:0.105,0.642,0.253 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.388:0.662,0.287,0.05 1|1:2:0,0,1 1|1:1.771:0.014,0.201,0.785 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.663:0.415,0.507,0.078 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.957,0.041,0.002 1|1:1.737:0.006,0.251,0.743 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.728:0.003,0.266,0.731 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.081:0.922,0.076,0.002 1|0:1.094:0.039,0.828,0.133 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 1|1:1.791:0.007,0.194,0.798 0|0:0:1,0,0 0|0:0.059:0.942,0.056,0.001 0|0:0.107:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0.111:0.894,0.1,0.006 0|0:0.091:0.911,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.237:0.778,0.206,0.016 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.781:0.246,0.727,0.027 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.168:0.84,0.152,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.861,0.135,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0.044:0.959,0.039,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.663,0.3,0.038 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.755:0.003,0.24,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18691370 SNP-3.18690129. C A . PASS AR2=0.945;DR2=0.95;AF=0.451 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.882:0.313,0.491,0.195 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.861:0.325,0.49,0.186 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.636:0.455,0.453,0.091 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.863:0.324,0.49,0.186 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.861:0.325,0.49,0.186 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:0.862:0.307,0.524,0.169 1|0:0.861:0.325,0.49,0.186 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.988:0.022,0.968,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:1.082:0.263,0.391,0.345 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.292:0.191,0.325,0.484 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.863:0.324,0.49,0.186 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0.878:0.315,0.492,0.193 0|1:1.078:0.265,0.391,0.344 1|0:0.861:0.324,0.49,0.186 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.861:0.325,0.49,0.186 1|1:2:0,0,1 0|0:0.862:0.324,0.49,0.186 0|0:0.861:0.325,0.49,0.186 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.861:0.325,0.49,0.186 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.868:0.321,0.491,0.188 1|0:0.861:0.325,0.49,0.186 0|1:0.868:0.321,0.491,0.188 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.861:0.325,0.49,0.186 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18691782 SNP-3.18690541. A G . PASS AR2=1;DR2=1;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18691986 SNP-3.18690745. C A . PASS AR2=0.995;DR2=0.996;AF=0.488 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.11:0.892,0.105,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.885,0.111,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.238:0.794,0.174,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.827,0.163,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.87:0.008,0.114,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.006:0.043,0.907,0.05 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.079:0.923,0.074,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18692796 SNP-3.18691555. C A . PASS AR2=0.999;DR2=0.999;AF=0.477 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.893,0.107,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18693936 SNP-3.18692695. C A . PASS AR2=0.969;DR2=0.976;AF=0.402 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.611:0.461,0.468,0.072 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.262:0.757,0.224,0.019 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.085:0.915,0.085,0 0|0:0.045:0.956,0.044,0 0|0:0.1:0.902,0.096,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.624:0.445,0.486,0.069 0|0:0.298:0.722,0.257,0.02 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.906,0.094,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.052,0.001 0|0:0.31:0.714,0.262,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.961,0.037,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.701,0.275,0.024 0|0:0.287:0.734,0.246,0.02 0|0:0.425:0.616,0.343,0.041 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.033:0.141,0.685,0.174 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0.047:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0.033:0.967,0.033,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0.098:0.905,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.597:0.475,0.453,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.959,0.04,0.002 0|0:0:1,0,0 1|0:0.733:0.394,0.478,0.127 1|1:2:0,0,1 0|0:0.042:0.958,0.041,0.001 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.299:0.724,0.252,0.023 0|0:0.167:0.838,0.157,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.634:0.439,0.488,0.073 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.186:0.826,0.162,0.012 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18694773 SNP-3.18693532. C A . PASS AR2=0.975;DR2=0.98;AF=0.336 GT:DS:GP 0|0:0.16:0.846,0.147,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.46:0.115,0.311,0.575 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.25:0.179,0.393,0.429 0|0:0.017:0.983,0.016,0 0|0:0.058:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.077,0.921 0|0:0:1,0,0 0|0:0.095:0.909,0.087,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|1:1:0,1,0 0|0:0.086:0.917,0.08,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.88:0.006,0.108,0.886 1|0:1:0,1,0 1|1:1.928:0.001,0.07,0.929 1|1:1.912:0.004,0.08,0.916 1|1:2:0,0,1 1|1:1.887:0.004,0.106,0.891 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.782:0.006,0.206,0.788 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.006,0.209,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|1:0.875:0.344,0.438,0.218 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.683:0.031,0.256,0.713 0|0:0.063:0.937,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.858:0.008,0.126,0.866 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.962,0.037,0.001 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.064:0.223,0.49,0.287 0|0:0:1,0,0 +3 18695016 SNP-3.18693775. A G . PASS AR2=0.995;DR2=0.996;AF=0.206 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.158:0.85,0.141,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.441:0.604,0.351,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18697802 SNP-3.18696561. A G . PASS AR2=0.986;DR2=0.988;AF=0.225 GT:DS:GP 1|0:1.341:0.101,0.457,0.442 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.837,0.163,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.913:0.002,0.082,0.916 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.674:0.049,0.228,0.723 1|0:1:0,1,0 1|1:1.787:0.014,0.185,0.801 0|0:0:1,0,0 1|1:1.778:0.009,0.203,0.788 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.066:0.103,0.728,0.169 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.789:0.014,0.183,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 +3 18697909 SNP-3.18696668. C A . PASS AR2=0.919;DR2=0.935;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.676,0.299,0.025 1|1:2:0,0,1 0|0:0.245:0.77,0.216,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.038,0.289,0.673 1|1:1.66:0.027,0.287,0.687 1|1:2:0,0,1 0|1:0.878:0.241,0.64,0.119 0|0:0.062:0.938,0.061,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0:1,0,0 1|1:1.837:0.009,0.145,0.846 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 1|0:0.802:0.372,0.453,0.175 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.909,0.091,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.84:0.004,0.152,0.844 1|1:2:0,0,1 1|1:1.49:0.101,0.308,0.591 1|1:2:0,0,1 1|1:1.308:0.117,0.458,0.425 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.246:0.146,0.462,0.392 1|1:1.814:0.006,0.174,0.82 1|1:1.459:0.076,0.388,0.535 1|0:1.22:0.159,0.463,0.378 1|1:1.525:0.065,0.346,0.59 0|0:0:1,0,0 1|1:1.438:0.082,0.398,0.52 1|1:1.718:0.002,0.279,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.715:0.02,0.244,0.735 0|0:0:1,0,0 0|1:1.422:0.087,0.405,0.508 0|0:0:1,0,0 1|1:1.77:0.011,0.208,0.781 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0 1|1:2:0,0,1 1|0:1.214:0.162,0.463,0.375 1|1:1.678:0.028,0.266,0.706 1|1:1.654:0.032,0.282,0.686 1|1:1.674:0.027,0.272,0.701 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.884:0.002,0.112,0.886 1|1:1.767:0.014,0.206,0.78 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.689:0.024,0.263,0.713 1|1:2:0,0,1 1|1:1.833:0.009,0.149,0.842 1|1:1.98:0,0.019,0.98 1|1:1.943:0.002,0.054,0.944 1|1:1.592:0.027,0.355,0.618 1|1:1.81:0.002,0.185,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.428:0.105,0.363,0.533 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.673:0.029,0.269,0.702 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.605:0.056,0.283,0.661 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.267:0.745,0.242,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.649:0.036,0.279,0.685 0|0:0.089:0.913,0.085,0.002 0|0:0.094:0.909,0.088,0.003 0|0:0:1,0,0 0|0:0.214:0.79,0.207,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.041:0.96,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.773:0.012,0.203,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.145:0.861,0.132,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.938,0.061,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.009,0.138,0.854 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.872:0.006,0.116,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.66:0.018,0.304,0.678 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.661:0.035,0.27,0.695 1|1:2:0,0,1 0|0:0.315:0.708,0.27,0.023 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.26:0.748,0.244,0.008 1|1:1.804:0.009,0.177,0.814 0|0:0:1,0,0 +3 18707780 SNP-3.18706539. C A . PASS AR2=0.976;DR2=0.979;AF=0.367 GT:DS:GP 0|0:0.077:0.924,0.075,0.001 1|1:2:0,0,1 0|0:0.093:0.909,0.09,0.001 1|1:1.893:0.002,0.103,0.895 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.807:0.015,0.163,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.848,0.15,0.002 0|0:0.109:0.894,0.104,0.002 0|0:0:1,0,0 0|0:0.113:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.946:0.001,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.005,0.103,0.892 1|1:2:0,0,1 1|1:1.902:0.004,0.089,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.005,0.14,0.855 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0,0.04,0.959 0|0:0:1,0,0 1|1:1.811:0.015,0.159,0.826 1|1:1.842:0.003,0.153,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.985:0,0.015,0.985 0|1:1:0,1,0 1|1:1.765:0.013,0.209,0.778 1|1:1.744:0.013,0.231,0.757 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.005,0.096,0.899 0|1:1:0,1,0 1|1:1.99:0,0.009,0.991 1|1:2:0,0,1 1|1:1.914:0.001,0.083,0.916 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.347:0.684,0.284,0.032 0|0:0.198:0.803,0.196,0.001 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.157:0.849,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.106:0.896,0.101,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.055:0.946,0.053,0.001 1|0:0.829:0.332,0.507,0.161 0|0:0.055:0.946,0.053,0.001 0|0:0.111:0.892,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.017,0.203,0.78 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.715:0.021,0.242,0.736 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 +3 18710665 SNP-3.18709424. C A . PASS AR2=0.973;DR2=0.978;AF=0.39 GT:DS:GP 0|0:0.283:0.737,0.243,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.242:0.774,0.209,0.017 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.924,0.075,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.818,0.175,0.006 0|0:0:1,0,0 0|0:0.298:0.725,0.252,0.023 1|0:1:0,1,0 0|0:0.28:0.74,0.24,0.02 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.427:0.67,0.232,0.097 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.369:0.664,0.302,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.836,0.161,0.003 1|0:1:0,1,0 0|0:0.058:0.942,0.057,0.001 0|1:0.435:0.612,0.341,0.047 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.089:0.916,0.079,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.272:0.745,0.238,0.017 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.277:0.743,0.236,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 1|0:1:0,1,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.218:0.793,0.197,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.726,0.252,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.288:0.714,0.283,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.09:0.913,0.084,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.075:0.926,0.072,0.001 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.855,0.142,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.774,0.21,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 +3 18712119 SNP-3.18710878. C A . PASS AR2=0.994;DR2=0.996;AF=0.338 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.504:0.087,0.321,0.592 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.725:0.276,0.723,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.656:0.021,0.301,0.677 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18714288 SNP-3.18713047. C A . PASS AR2=0.994;DR2=0.995;AF=0.376 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.888:0.004,0.105,0.892 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.9,0.097,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 1|1:1.85:0.003,0.143,0.854 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.932:0,0.067,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.045,0.953 0|0:0.105:0.898,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.908,0.088,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.19:0.819,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.912:0.002,0.085,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.969:0,0.03,0.969 0|0:0:1,0,0 +3 18716479 SNP-3.18715238. C A . PASS AR2=1;DR2=1;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18718548 SNP-3.18717307. A G . PASS AR2=0.984;DR2=0.986;AF=0.304 GT:DS:GP 1|1:1.898:0,0.102,0.898 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.829,0.162,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.13,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.937,0.062,0.001 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.165:0.837,0.161,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.946,0.053,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.045,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0.271:0.741,0.247,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.106:0.897,0.101,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.875,0.118,0.008 0|0:0:1,0,0 1|1:1.819:0,0.181,0.819 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.961:0.153,0.733,0.114 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0.123:0.879,0.118,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.077,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.664,0.309,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.768,0.229,0.003 0|0:0.067:0.934,0.066,0.001 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 +3 18721636 SNP-3.18720395. A G . PASS AR2=1;DR2=1;AF=0.241 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18722594 SNP-3.18721353. A G . PASS AR2=0.987;DR2=0.99;AF=0.253 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.591:0.04,0.329,0.631 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.99:0.062,0.885,0.052 0|0:0:1,0,0 1|1:1.884:0.004,0.109,0.887 1|1:1.721:0.014,0.25,0.736 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.721:0.015,0.248,0.737 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.892:0.003,0.102,0.895 1|0:1:0,1,0 1|1:1.896:0.003,0.099,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.009,0.223,0.767 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.543:0.048,0.36,0.591 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18728215 SNP-3.18726974. C A . PASS AR2=1;DR2=1;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18729426 SNP-3.18728185. A G . PASS AR2=0.864;DR2=0.909;AF=0.448 GT:DS:GP 1|0:0.779:0.355,0.511,0.134 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.004,0.089,0.907 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.871:0.003,0.122,0.875 1|0:0.666:0.436,0.461,0.103 1|1:1.835:0.007,0.15,0.842 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.652:0.455,0.438,0.107 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.786:0.014,0.187,0.8 1|1:1.838:0.007,0.147,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.006,0.139,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.633:0.466,0.436,0.098 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.002,0.043,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.692:0.427,0.453,0.119 0|0:0.646:0.437,0.479,0.084 1|0:0.76:0.397,0.446,0.157 0|0:0.648:0.458,0.437,0.106 0|0:0.665:0.445,0.445,0.11 1|0:0.678:0.434,0.454,0.112 1|1:2:0,0,1 1|1:0.642:0.462,0.434,0.104 0|0:0.566:0.515,0.404,0.081 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.56:0.516,0.407,0.077 1|1:2:0,0,1 0|0:0.568:0.513,0.406,0.081 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.644:0.46,0.435,0.105 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.58:0.505,0.41,0.085 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.57:0.512,0.407,0.082 0|0:0.663:0.445,0.446,0.109 0|0:0.624:0.473,0.43,0.097 1|1:1.808:0.008,0.175,0.816 1|1:1.062:0.179,0.58,0.241 1|1:2:0,0,1 0|0:0.644:0.459,0.437,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.943:0.002,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.683:0.434,0.45,0.116 1|1:2:0,0,1 1|1:1.922:0.001,0.076,0.923 0|0:0.684:0.432,0.452,0.116 1|1:2:0,0,1 0|1:0.598:0.492,0.417,0.09 1|1:2:0,0,1 1|1:1.92:0.002,0.075,0.923 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.01,0.165,0.825 0|0:0.63:0.465,0.44,0.095 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.829:0.008,0.156,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.018,0.239,0.743 0|0:0.612:0.48,0.428,0.092 1|1:1.912:0.002,0.083,0.915 1|1:2:0,0,1 0|0:0.716:0.408,0.468,0.124 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 1|1:1.869:0.004,0.122,0.874 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.588:0.499,0.413,0.087 1|1:1.914:0.003,0.08,0.917 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.645:0.464,0.427,0.109 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.706:0.418,0.459,0.123 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.588:0.499,0.413,0.087 0|0:0.606:0.485,0.424,0.091 0|1:0.724:0.405,0.465,0.13 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.531:0.538,0.392,0.07 0|0:0.609:0.483,0.425,0.092 0|0:0.572:0.508,0.412,0.08 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.568:0.513,0.406,0.081 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.64:0.462,0.437,0.102 1|1:1.847:0.006,0.14,0.854 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.455:0.61,0.325,0.065 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.587:0.5,0.413,0.087 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.587:0.5,0.413,0.087 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.515:0.554,0.376,0.069 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.516:0.068,0.349,0.584 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.586:0.5,0.413,0.087 +3 18730511 SNP-3.18729270. A G . PASS AR2=0.945;DR2=0.956;AF=0.458 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.673:0.027,0.273,0.7 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.695:0.023,0.26,0.718 1|1:2:0,0,1 1|1:1.673:0.027,0.272,0.7 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.496:0.058,0.388,0.554 1|1:1.572:0.04,0.349,0.612 1|1:2:0,0,1 1|1:1.755:0.018,0.21,0.772 0|0:0:1,0,0 1|1:1.723:0.021,0.236,0.744 0|1:1:0,1,0 1|1:1.662:0.031,0.276,0.693 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.719:0.02,0.24,0.739 1|1:1.531:0.058,0.354,0.589 1|1:1.674:0.035,0.257,0.708 0|1:1:0,1,0 1|1:1.661:0.028,0.284,0.688 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.271:0.041,0.647,0.312 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.874:0.007,0.112,0.881 0|0:0:1,0,0 1|1:1.68:0.029,0.263,0.708 1|1:1.714:0.019,0.249,0.732 1|1:1.719:0.018,0.245,0.737 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.01,0.217,0.773 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.791:0.01,0.189,0.801 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.789:0.007,0.198,0.796 1|1:1.832:0.006,0.155,0.839 1|1:1.644:0.032,0.291,0.676 0|0:0:1,0,0 1|1:1.674:0.027,0.273,0.7 1|1:2:0,0,1 1|1:1.645:0.033,0.288,0.678 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.01,0.212,0.777 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.167:0.833,0.167,0 1|1:1.673:0.027,0.273,0.7 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.561:0.048,0.344,0.609 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.023,0.257,0.72 1|1:1.684:0.025,0.265,0.709 1|1:2:0,0,1 1|1:1.869:0.005,0.121,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.008,0.172,0.82 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.716:0.02,0.245,0.736 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.018,0.234,0.748 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.557:0.055,0.332,0.612 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.005,0.169,0.826 1|1:1.705:0.022,0.251,0.727 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.612:0.04,0.308,0.652 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|1:1.722:0.043,0.192,0.765 1|1:1.899:0.003,0.095,0.902 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0.001,0.037,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.727:0.02,0.233,0.747 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.77:0.015,0.2,0.785 0|0:0:1,0,0 1|1:2:0,0,1 +3 18732079 SNP-3.18730838. C A . PASS AR2=0.972;DR2=0.982;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:1.97:0.001,0.028,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.932:0.367,0.334,0.299 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.545:0.539,0.378,0.083 1|1:1.927:0,0.073,0.927 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.509:0.57,0.351,0.079 0|1:0.828:0.33,0.512,0.158 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.002,0.081,0.917 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.273:0.73,0.267,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.33:0.262,0.145,0.593 0|0:0:1,0,0 1|0:1.302:0.056,0.586,0.358 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.952:0,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.866:0.007,0.12,0.873 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.776:0.007,0.209,0.784 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18733051 SNP-3.18731810. C A . PASS AR2=0.995;DR2=0.996;AF=0.35 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.002,0.061,0.937 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.002,0.058,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.357:0.645,0.353,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.847:0.004,0.145,0.851 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.002,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.009,0 1|1:1.963:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.001,0.086,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.948:0,0.051,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 +3 18733512 SNP-3.18732271. C A . PASS AR2=0.945;DR2=0.955;AF=0.402 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.174:0.827,0.173,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.898:0.002,0.098,0.9 1|1:1.829:0.009,0.153,0.838 1|1:2:0,0,1 0|0:0.286:0.733,0.247,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.251:0.766,0.217,0.017 0|0:0.142:0.864,0.13,0.006 1|1:1.767:0.015,0.203,0.782 0|0:0:1,0,0 0|0:0.31:0.716,0.259,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.282:0.739,0.24,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.789:0.33,0.552,0.119 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.309:0.717,0.256,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.871,0.123,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.255:0.764,0.217,0.019 0|0:0.238:0.773,0.216,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.805,0.187,0.008 0|0:0.24:0.773,0.215,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.778,0.207,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.852,0.14,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.223:0.792,0.194,0.015 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.112:0.89,0.107,0.002 0|0:0:1,0,0 0|0:0.157:0.847,0.15,0.004 0|0:0.112:0.89,0.107,0.003 0|0:0.378:0.659,0.305,0.037 0|0:0.168:0.834,0.165,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.317:0.711,0.262,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.001,0.095,0.904 1|1:2:0,0,1 1|1:1.769:0.015,0.201,0.784 1|1:2:0,0,1 1|1:1.674:0.027,0.271,0.701 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.004,0.119,0.877 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.913:0.001,0.085,0.914 0|0:0.191:0.815,0.179,0.006 1|1:2:0,0,1 1|1:1.685:0.026,0.263,0.711 1|1:2:0,0,1 1|1:1.786:0.013,0.188,0.799 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.229:0.781,0.21,0.009 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.291:0.731,0.248,0.022 0|0:0:1,0,0 0|0:0.11:0.896,0.098,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.009,0.175,0.816 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.123:0.88,0.117,0.003 0|0:0.008:0.992,0.008,0 0|0:0.058:0.944,0.054,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.235:0.78,0.204,0.016 1|1:1.55:0.052,0.346,0.602 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.088:0.914,0.084,0.002 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.388:0.657,0.297,0.045 0|0:0.012:0.988,0.012,0 0|0:0.261:0.753,0.233,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.781,0.206,0.012 1|1:1.932:0.001,0.066,0.933 0|0:0.084:0.921,0.074,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.839,0.154,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.782,0.204,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.746,0.234,0.02 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.798,0.191,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.714,0.268,0.018 0|0:0.216:0.799,0.187,0.015 1|1:2:0,0,1 0|0:0:1,0,0 +3 18734715 SNP-3.18733474. A G . PASS AR2=0.891;DR2=0.914;AF=0.218 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.008:0.249,0.493,0.257 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.106:0.899,0.097,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.462:0.578,0.383,0.039 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.957:0.277,0.489,0.234 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.866:0.336,0.461,0.202 1|0:0.872:0.322,0.484,0.194 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.882:0.316,0.487,0.198 0|0:0:1,0,0 1|0:0.76:0.248,0.745,0.008 0|0:0:1,0,0 0|0:0.429:0.577,0.416,0.006 0|0:0.588:0.511,0.389,0.1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.337:0.674,0.314,0.011 0|0:0.253:0.769,0.209,0.022 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.629:0.046,0.279,0.675 0|0:0:1,0,0 0|0:0.346:0.66,0.334,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.848,0.15,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.491:0.568,0.374,0.059 0|1:0.647:0.437,0.478,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0,0.104,0.896 0|0:0:1,0,0 0|0:0.495:0.566,0.373,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.711:0.482,0.325,0.193 0|0:0:1,0,0 0|0:0.288:0.721,0.269,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.22:0.163,0.455,0.382 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.906,0.092,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.223:0.192,0.394,0.415 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.52:0.547,0.385,0.068 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.115:0.219,0.446,0.334 1|1:2:0,0,1 0|0:0.429:0.62,0.331,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.8,0.194,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.012:0.252,0.485,0.264 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.276:0.731,0.262,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.885,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.954:0.279,0.488,0.233 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.994:0.264,0.478,0.258 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.218:0.796,0.189,0.015 0|0:0.192:0.816,0.177,0.008 0|1:0.944:0.28,0.496,0.224 0|1:0.892:0.323,0.463,0.215 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.866:0.338,0.459,0.203 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18739438 SNP-3.18738197. A G . PASS AR2=0.844;DR2=0.89;AF=0.255 GT:DS:GP 0|0:0.305:0.728,0.239,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.568:0.522,0.387,0.09 0|0:0:1,0,0 0|0:0.291:0.736,0.237,0.027 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.195:0.208,0.389,0.403 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.334:0.701,0.263,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.226:0.787,0.2,0.013 0|0:0.521:0.545,0.389,0.066 0|0:0:1,0,0 0|0:0.379:0.657,0.307,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.603,0.346,0.051 0|0:0.935:0.318,0.43,0.252 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.885:0.269,0.576,0.154 1|1:2:0,0,1 0|0:0.112:0.9,0.088,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.691,0.265,0.044 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.293:0.731,0.244,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.356:0.688,0.268,0.044 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.261:0.139,0.462,0.399 0|0:0.524:0.551,0.373,0.076 1|1:2:0,0,1 1|0:0.384:0.657,0.302,0.041 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.556:0.527,0.39,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 1|1:1.815:0.011,0.164,0.825 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.316:0.705,0.274,0.021 0|1:0.699:0.36,0.581,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.802,0.197,0.001 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.085:0.915,0.085,0 0|0:0:1,0,0 0|0:0.459:0.606,0.329,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.958:0.124,0.795,0.081 0|0:0:1,0,0 0|0:0.339:0.706,0.249,0.045 1|0:1.467:0.049,0.434,0.517 0|1:0.862:0.312,0.515,0.174 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.862,0.137,0.001 0|1:1.076:0.202,0.52,0.278 0|0:0.588:0.501,0.411,0.089 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.148:0.852,0.147,0.001 0|0:0.577:0.508,0.406,0.086 0|0:0.555:0.509,0.426,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.367:0.678,0.277,0.045 1|1:2:0,0,1 0|1:1.183:0.114,0.589,0.297 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.766,0.216,0.018 0|0:0:1,0,0 0|0:0.247:0.773,0.207,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.273:0.746,0.234,0.019 0|0:0:1,0,0 0|0:0.607:0.487,0.42,0.093 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.438:0.608,0.345,0.046 0|0:0.399:0.637,0.327,0.036 0|0:0.527:0.519,0.434,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.579:0.519,0.383,0.098 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.174:0.095,0.636,0.269 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.87:0.385,0.359,0.256 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.237:0.782,0.199,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.281:0.747,0.225,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.507:0.561,0.371,0.068 0|0:0.624:0.478,0.419,0.102 0|0:0.513:0.577,0.333,0.09 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.511:0.096,0.298,0.607 0|0:0.314:0.715,0.257,0.029 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.308:0.722,0.247,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.171:0.839,0.151,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.721:0.437,0.405,0.158 1|1:2:0,0,1 0|0:0.377:0.66,0.304,0.037 1|1:2:0,0,1 1|1:2:0,0,1 +3 18745988 SNP-3.18744747. C A . PASS AR2=0.981;DR2=0.985;AF=0.406 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.228:0.785,0.202,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.223:0.79,0.197,0.013 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.051:0.952,0.045,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.107:0.894,0.106,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.183:0.825,0.166,0.008 0|0:0.185:0.822,0.17,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.852,0.141,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.311:0.71,0.269,0.021 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:0.547:0.505,0.442,0.052 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.134:0.87,0.126,0.004 0|0:0:1,0,0 0|0:0.288:0.73,0.253,0.017 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.787,0.2,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.229:0.784,0.202,0.013 0|0:0:1,0,0 0|0:0.219:0.793,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.21:0.801,0.187,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.793,0.195,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.204:0.807,0.182,0.011 0|0:0.134:0.872,0.123,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18747914 SNP-3.18746673. C A . PASS AR2=0.979;DR2=0.984;AF=0.396 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.476:0.583,0.359,0.059 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.213:0.787,0.213,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.511:0.555,0.379,0.066 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.295:0.713,0.279,0.008 0|0:0.239:0.765,0.231,0.004 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.07:0.931,0.068,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.128:0.878,0.115,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.907,0.088,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.712:0.375,0.537,0.087 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.115:0.889,0.107,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.338:0.691,0.28,0.029 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.183:0.825,0.167,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.143:0.867,0.123,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.511:0.555,0.379,0.066 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.885,0.108,0.006 0|0:0:1,0,0 0|0:0.127:0.877,0.118,0.004 1|1:2:0,0,1 0|0:0:1,0,0 +3 18749265 SNP-3.18748024. A G . PASS AR2=0.952;DR2=0.962;AF=0.451 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:1.885:0.005,0.105,0.89 1|1:1.533:0.008,0.452,0.54 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0.001,0.023,0.976 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.633:0.02,0.327,0.653 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.631:0.033,0.303,0.664 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.007,0.147,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.731:0.019,0.23,0.75 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.908:0.003,0.086,0.911 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.94:0.002,0.056,0.942 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.753:0.013,0.222,0.765 1|1:1.867:0.006,0.122,0.873 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.939:0.001,0.058,0.94 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.994:0,0.006,0.994 1|0:1:0,1,0 0|1:0.943:0.104,0.848,0.048 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.296:0.715,0.274,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.867,0.122,0.011 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.916:0.287,0.51,0.203 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.958,0.041,0.001 0|0:0.358:0.647,0.348,0.005 1|1:1.502:0.059,0.38,0.561 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.028,0.275,0.697 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.804:0.358,0.479,0.163 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.01:0.25,0.489,0.261 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.873:0.004,0.119,0.877 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.628:0.035,0.301,0.664 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.955,0.043,0.001 1|0:0.919:0.294,0.493,0.213 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 0|1:1.081:0.146,0.626,0.227 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.059:0.942,0.058,0 1|0:1:0,1,0 0|0:0.047:0.954,0.045,0.001 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.397:0.091,0.42,0.489 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.695:0.022,0.262,0.716 1|1:1.972:0.001,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.702:0.022,0.253,0.724 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.534:0.495,0.477,0.029 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.002,0.047,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.485:0.102,0.311,0.587 0|0:0:1,0,0 1|1:2:0,0,1 +3 18749284 SNP-3.18748043. C A . PASS AR2=0.994;DR2=0.995;AF=0.331 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.945,0.053,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.941:0,0.059,0.941 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.626:0.038,0.299,0.664 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.846:0.007,0.14,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.843:0.008,0.141,0.851 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.838:0.007,0.147,0.845 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.866:0.007,0.119,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18749395 SNP-3.18748154. A G . PASS AR2=0.93;DR2=0.947;AF=0.514 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.852:0.334,0.48,0.186 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.216:0.098,0.589,0.313 0|1:1.024:0.097,0.783,0.12 1|1:2:0,0,1 1|1:1.715:0.02,0.244,0.735 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.287:0.735,0.242,0.023 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|0:1.264:0.105,0.527,0.368 1|1:1.736:0.034,0.196,0.77 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.612:0.036,0.315,0.649 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.022,0.253,0.725 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.474:0.005,0.517,0.479 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.004,0.102,0.894 1|0:1:0,1,0 1|0:1.385:0.021,0.573,0.406 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.63:0.057,0.255,0.687 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.583:0.001,0.415,0.584 1|1:2:0,0,1 0|1:1.133:0.179,0.51,0.311 1|1:2:0,0,1 0|0:0.769:0.398,0.434,0.167 1|1:1.896:0.002,0.101,0.897 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.671:0.001,0.328,0.672 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 1|0:1.141:0.071,0.717,0.212 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.003,0.153,0.844 1|1:1.976:0,0.024,0.976 1|0:1.332:0.008,0.653,0.34 1|1:1.525:0.057,0.36,0.583 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.314:0.717,0.251,0.031 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.627:0.035,0.303,0.662 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.21:0.084,0.622,0.294 1|1:2:0,0,1 0|1:1.258:0.122,0.497,0.381 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.376:0.027,0.57,0.403 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.747:0.34,0.573,0.087 1|1:1.96:0,0.039,0.96 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.042:0.167,0.624,0.209 1|0:1.402:0.086,0.426,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.005,0.189,0.805 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.002,0.066,0.931 0|1:1.261:0.028,0.682,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.908:0.3,0.492,0.208 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.909:0.003,0.086,0.912 1|1:2:0,0,1 1|1:1.696:0.023,0.257,0.719 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.395:0.117,0.37,0.512 1|1:2:0,0,1 1|0:1.497:0.039,0.424,0.537 1|1:1.385:0.16,0.295,0.545 0|0:0:1,0,0 1|1:2:0,0,1 +3 18749735 SNP-3.18748494. C A . PASS AR2=0.976;DR2=0.982;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|1:1.821:0.027,0.126,0.848 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.319:0.698,0.285,0.017 0|0:0.325:0.689,0.298,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.061,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.007,0.167,0.826 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.074:0.01,0.907,0.084 1|1:2:0,0,1 1|1:1.606:0.008,0.377,0.615 1|0:1:0,1,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.245:0.005,0.746,0.25 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.123:0.882,0.114,0.004 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.592:0.497,0.415,0.088 0|0:0.287:0.726,0.26,0.014 0|0:0.11:0.894,0.103,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.203:0.797,0.203,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.275:0.744,0.238,0.018 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.019:0.981,0.019,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0.166:0.836,0.162,0.002 0|0:0:1,0,0 0|0:0.151:0.853,0.143,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0 1|1:2:0,0,1 0|0:0.013:0.987,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.834,0.162,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.482:0.579,0.36,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0,0.189,0.811 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18750724 SNP-3.18749483. C A . PASS AR2=0.94;DR2=0.95;AF=0.381 GT:DS:GP 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.759:0.413,0.414,0.172 1|1:1.825:0.013,0.149,0.838 0|1:1.236:0.054,0.655,0.29 0|0:0.146:0.86,0.135,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.745,0.236,0.019 0|0:0:1,0,0 0|0:0.166:0.841,0.151,0.007 0|0:0.074:0.928,0.07,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.289:0.73,0.252,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.786,0.201,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.875,0.123,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.773,0.225,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.531:0.108,0.252,0.639 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0.131:0.871,0.128,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.589:0.021,0.369,0.61 1|1:2:0,0,1 0|1:1.366:0.084,0.465,0.451 1|1:2:0,0,1 0|0:0.225:0.791,0.193,0.016 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 0|0:0:1,0,0 1|1:1.893:0.003,0.1,0.897 0|1:1.315:0.106,0.474,0.42 1|0:0.925:0.285,0.504,0.21 1|1:1.918:0.002,0.077,0.92 0|1:1.065:0.225,0.485,0.29 1|0:1.421:0.032,0.515,0.453 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.549:0.064,0.322,0.613 1|1:1.316:0.005,0.674,0.321 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.142:0.124,0.611,0.266 1|1:1.732:0.025,0.219,0.756 1|1:1.299:0.072,0.556,0.372 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.865:0.199,0.737,0.064 0|1:1.21:0.122,0.545,0.333 1|1:1.976:0,0.024,0.976 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.014,0.138,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.967:0.259,0.515,0.226 1|1:2:0,0,1 1|1:1.817:0.007,0.168,0.825 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.003,0.109,0.888 1|1:2:0,0,1 0|0:0.223:0.789,0.199,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0.001 0|0:0:1,0,0 0|0:0.198:0.812,0.178,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.179:0.83,0.162,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.636:0,0.364,0.636 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.076:0.925,0.074,0.001 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.799,0.19,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.8:0.01,0.181,0.81 0|0:0:1,0,0 0|0:0.258:0.755,0.231,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0.215:0.798,0.188,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.907,0.092,0.001 0|0:0:1,0,0 0|0:0.146:0.858,0.137,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.243:0.776,0.206,0.018 +3 18751362 SNP-3.18750121. C A . PASS AR2=0.997;DR2=0.998;AF=0.349 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0,0.055,0.945 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.568:0.013,0.407,0.58 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18751506 SNP-3.18750265. C A . PASS AR2=0.98;DR2=0.985;AF=0.396 GT:DS:GP 0|0:0.084:0.919,0.078,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.919,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.841,0.153,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.11:0.89,0.109,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.463:0.592,0.354,0.055 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.547:0.524,0.404,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.83,0.158,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.136:0.869,0.125,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0,0.077,0.923 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.206:0.795,0.204,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.384:0.622,0.372,0.006 0|0:0.464:0.593,0.351,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.858,0.137,0.005 0|1:1:0,1,0 0|0:0.077:0.924,0.074,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.128:0.876,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.499:0.57,0.361,0.069 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18753459 SNP-3.18752218. C A . PASS AR2=0.993;DR2=0.994;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.004,0.112,0.884 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.925:0,0.074,0.926 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.694:0.021,0.264,0.715 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.556:0.028,0.387,0.584 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.003,0.104,0.893 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.207:0.042,0.709,0.249 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.003,0.083,0.913 0|0:0:1,0,0 +3 18753953 SNP-3.18752712. C A . PASS AR2=0.999;DR2=0.999;AF=0.471 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.828,0.169,0.003 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18754343 SNP-3.18753102. C A . PASS AR2=0.973;DR2=0.979;AF=0.315 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0.208:0.792,0.207,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.905,0.094,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.574:0.002,0.423,0.575 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.014,0.167,0.819 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:1.914:0.002,0.081,0.916 1|1:1.931:0.002,0.066,0.933 1|1:2:0,0,1 1|1:1.859:0.003,0.134,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.746:0.015,0.224,0.761 1|1:1.841:0.006,0.146,0.847 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.549:0.067,0.317,0.616 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.356:0.122,0.399,0.479 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.684:0.03,0.256,0.714 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.839:0.004,0.153,0.843 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.827:0.009,0.155,0.836 1|1:2:0,0,1 1|1:1.837:0.006,0.152,0.842 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.004,0.084,0.913 0|0:0.167:0.834,0.165,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.43:0.163,0.245,0.593 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.053,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.008,0.13,0.862 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|1:1.872:0.007,0.114,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0,0.062,0.938 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.893:0.001,0.105,0.894 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18755603 SNP-3.18754362. C A . PASS AR2=0.999;DR2=0.999;AF=0.382 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.942,0.058,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18758727 SNP-3.18757486. C A . PASS AR2=0.983;DR2=0.986;AF=0.343 GT:DS:GP 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.661:0.035,0.27,0.695 1|1:1.896:0.001,0.103,0.897 1|1:1.747:0.018,0.217,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.65:0.035,0.28,0.685 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.059:0.941,0.059,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.006,0.151,0.843 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.939 1|1:1.815:0.008,0.169,0.823 1|1:1.72:0.022,0.236,0.742 1|1:2:0,0,1 1|1:1.788:0.011,0.189,0.8 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.001,0.097,0.902 0|0:0:1,0,0 1|1:1.769:0.018,0.195,0.787 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.006,0.145,0.849 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.643:0.037,0.283,0.68 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18759891 SNP-3.18758650. C A . PASS AR2=0.974;DR2=0.98;AF=0.415 GT:DS:GP 0|0:0.044:0.957,0.043,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.78,0.209,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.777,0.209,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.764,0.224,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.117:0.885,0.114,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.92,0.077,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.374:0.668,0.29,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0.322:0.72,0.238,0.042 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.23:0.781,0.208,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.657:0.391,0.562,0.047 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.425:0.632,0.312,0.057 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.827,0.165,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.176:0.831,0.162,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.513:0.561,0.364,0.075 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.516:0.504,0.475,0.02 0|0:0.237:0.771,0.221,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.991:0.172,0.666,0.163 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.245:0.775,0.205,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 18761242 SNP-3.18760001. C A . PASS AR2=0.993;DR2=0.993;AF=0.36 GT:DS:GP 0|0:0.016:0.984,0.016,0 1|1:1.88:0.006,0.107,0.886 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:1.862:0.004,0.13,0.866 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.934:0.001,0.065,0.934 1|1:2:0,0,1 1|1:1.883:0.003,0.111,0.886 1|1:1.96:0.001,0.039,0.961 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.933,0.067,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0,0.035,0.964 1|1:2:0,0,1 1|1:1.84:0.002,0.155,0.842 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.128:0.873,0.125,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.762,0.173,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18761440 SNP-3.18760199. A G . PASS AR2=0.978;DR2=0.982;AF=0.493 GT:DS:GP 1|1:1.917:0.003,0.077,0.92 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.787:0.009,0.194,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.011,0.204,0.785 1|1:1.931:0.001,0.066,0.933 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0.002,0.069,0.929 1|1:1.764:0.016,0.204,0.78 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.788:0.009,0.194,0.797 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.812:0.009,0.17,0.821 1|1:1.843:0.006,0.145,0.849 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.969:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.002,0.074,0.924 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.836:0.002,0.16,0.838 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.857:0.143,0.857,0 1|1:1.672:0.029,0.27,0.701 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.716:0.008,0.267,0.724 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.876:0.005,0.114,0.881 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.006,0.124,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.824:0.004,0.168,0.828 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.009,0.192,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.002,0.082,0.916 1|1:1.807:0.006,0.18,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.006,0.144,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.013,0.075,0.912 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.967:0.001,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0.001,0.02,0.979 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.787:0.011,0.191,0.798 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.004,0.105,0.891 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.381:0.147,0.326,0.527 0|0:0:1,0,0 1|1:2:0,0,1 +3 18767602 SNP-3.18766361. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18767876 SNP-3.18766635. C A . PASS AR2=1;DR2=1;AF=0.455 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18770394 SNP-3.18769153. A G . PASS AR2=0.939;DR2=0.956;AF=0.451 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.395:0.084,0.437,0.479 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.297:0.13,0.442,0.428 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.745:0.021,0.213,0.766 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.525:0.052,0.372,0.577 1|1:1.717:0.02,0.244,0.736 1|1:1.504:0.056,0.385,0.56 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.657:0.03,0.283,0.687 1|1:1.686:0.022,0.271,0.708 0|1:1:0,1,0 1|1:1.315:0.103,0.48,0.418 1|1:1.952:0,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.408:0.077,0.439,0.485 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.63:0.032,0.306,0.662 1|1:2:0,0,1 1|1:1.6:0.016,0.367,0.616 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.97 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.638:0.009,0.343,0.647 1|1:1.857:0.001,0.14,0.858 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.62:0.011,0.358,0.631 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.009,0.154,0.837 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.753,0.247,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.605:0.01,0.374,0.615 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.312:0.128,0.432,0.44 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.806:0.01,0.173,0.816 1|1:1.617:0.037,0.31,0.654 1|0:1:0,1,0 0|1:1.503:0.057,0.382,0.561 1|0:1:0,1,0 1|1:1.953:0.001,0.046,0.954 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.757:0.014,0.214,0.772 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.559:0.055,0.331,0.614 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.652:0.03,0.289,0.682 1|1:1.742:0.017,0.224,0.759 1|1:1.665:0.03,0.275,0.695 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.003,0.116,0.881 1|1:2:0,0,1 1|1:1.823:0.006,0.166,0.829 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.585:0.046,0.323,0.631 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.038,0.311,0.651 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.769:0.01,0.211,0.779 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.444:0.119,0.318,0.563 0|0:0:1,0,0 1|1:2:0,0,1 +3 18770657 SNP-3.18769416. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18770748 SNP-3.18769507. C A . PASS AR2=1;DR2=1;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18771856 SNP-3.18770615. C A . PASS AR2=0.995;DR2=0.995;AF=0.475 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.1,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.899,0.098,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.831,0.154,0.016 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.815:0,0.184,0.816 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.88,0.116,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.854:0.018,0.11,0.872 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0,0.077,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.911,0.089,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18772680 SNP-3.18771439. A G . PASS AR2=0.912;DR2=0.925;AF=0.241 GT:DS:GP 0|0:0:1,0,0 0|0:0.246:0.778,0.198,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.794:0.419,0.368,0.213 1|1:2:0,0,1 0|1:1.274:0.129,0.468,0.403 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.221:0.794,0.191,0.015 0|1:1.037:0.231,0.502,0.268 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.098:0.217,0.468,0.315 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.061:0.214,0.511,0.275 1|1:1.565:0.023,0.389,0.588 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.922:0.289,0.499,0.212 1|1:2:0,0,1 0|1:1.16:0.164,0.511,0.324 1|1:2:0,0,1 0|1:1.031:0.214,0.541,0.245 1|1:1.196:0.166,0.472,0.362 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.107:0.897,0.099,0.004 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.874,0.119,0.006 0|0:0:1,0,0 0|0:0.243:0.769,0.218,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.059,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0.007:0.993,0.006,0 0|0:0.759:0.393,0.455,0.152 1|0:1.291:0.124,0.462,0.415 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.243:0.14,0.477,0.383 1|1:2:0,0,1 0|1:1.047:0.236,0.481,0.283 1|0:0.759:0.388,0.465,0.147 1|1:2:0,0,1 1|0:1.276:0.119,0.485,0.395 1|0:1.115:0.179,0.526,0.294 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.572:0.06,0.308,0.632 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.908,0.09,0.001 1|1:2:0,0,1 1|0:1.148:0.176,0.499,0.324 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.761:0.386,0.467,0.147 0|0:0.331:0.706,0.257,0.037 0|1:1.308:0.13,0.433,0.438 1|0:0.707:0.417,0.46,0.124 0|0:0.89:0.335,0.44,0.225 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.954:0.253,0.54,0.207 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.949,0.049,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.938,0.06,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18773308 SNP-3.18772067. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18774925 SNP-3.18773684. C A . PASS AR2=0.982;DR2=0.986;AF=0.436 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.898,0.1,0.001 0|0:0.115:0.902,0.082,0.016 0|0:0.057:0.944,0.056,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.686:0.028,0.257,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.24:0.173,0.414,0.413 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.152:0.18,0.487,0.333 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.002,0.075,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0,0.251,0.749 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.007,0.145,0.848 0|1:1.415:0.032,0.521,0.447 1|1:1.519:0.063,0.354,0.583 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.781:0.014,0.191,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.877:0.008,0.107,0.885 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.005,0.096,0.899 1|1:1.91:0.003,0.084,0.913 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.009,0.25,0.741 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.961,0.038,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18775732 SNP-3.18774491. C A . PASS AR2=0.944;DR2=0.954;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.097:0.905,0.092,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.887,0.113,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.09:0.911,0.087,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.294:0.723,0.259,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0.058:0.943,0.055,0.002 0|0:0.204:0.797,0.202,0.001 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.225:0.787,0.202,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.826,0.161,0.014 0|0:0.138:0.866,0.13,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.875,0.118,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.103:0.897,0.103,0 0|0:0:1,0,0 0|1:0.512:0.555,0.377,0.068 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.03,0.001 0|0:0.185:0.822,0.172,0.006 0|0:0.277:0.744,0.235,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.242:0.768,0.221,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.799:0.361,0.48,0.159 0|1:0.762:0.384,0.47,0.146 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.743:0.388,0.48,0.132 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.145:0.858,0.139,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.828:0.346,0.48,0.174 0|0:0.282:0.731,0.256,0.013 1|0:0.706:0.414,0.466,0.12 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.088:0.915,0.083,0.003 0|0:0.337:0.713,0.237,0.05 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 0|0:0.097:0.906,0.091,0.003 1|1:2:0,0,1 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.313:0.705,0.278,0.017 0|0:0.827:0.346,0.48,0.174 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.239:0.764,0.234,0.003 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0.092:0.91,0.087,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.827:0.347,0.48,0.173 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.331:0.688,0.293,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.161:0.846,0.146,0.008 0|0:0.299:0.716,0.269,0.015 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.802,0.189,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.895,0.104,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.827:0.346,0.48,0.174 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.766,0.22,0.014 0|0:0:1,0,0 0|0:0.448:0.596,0.359,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.146:0.86,0.133,0.006 0|0:0:1,0,0 0|0:0.762:0.458,0.322,0.22 1|1:2:0,0,1 0|0:0:1,0,0 +3 18775875 SNP-3.18774634. C A . PASS AR2=0.973;DR2=0.98;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.032:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.711:0.024,0.241,0.735 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.665:0.027,0.281,0.692 1|1:1.562:0.051,0.336,0.613 1|1:2:0,0,1 1|1:1.656:0.034,0.276,0.69 1|1:1.625:0.042,0.292,0.666 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.697:0.025,0.253,0.722 1|1:2:0,0,1 1|1:1.776:0.014,0.195,0.791 0|0:0:1,0,0 1|1:1.863:0.004,0.129,0.867 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.854:0.006,0.135,0.859 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.648:0.036,0.279,0.684 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.001,0.084,0.915 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.766:0.013,0.208,0.779 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.009,0.102,0.889 1|1:1.665:0.017,0.3,0.682 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.005,0.137,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.21:0.227,0.336,0.437 0|0:0:1,0,0 +3 18776754 SNP-3.18775513. A G . PASS AR2=0.948;DR2=0.962;AF=0.493 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.772:0.376,0.475,0.148 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.677:0.452,0.418,0.129 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:0.984:0.245,0.527,0.229 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.853:0.329,0.488,0.182 0|1:0.629:0.473,0.426,0.102 1|1:2:0,0,1 0|0:0.714:0.414,0.457,0.128 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.909:0.002,0.086,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.844:0.006,0.143,0.851 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.005,0.13,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.877:0.004,0.116,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.056,0.943 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.592:0.504,0.399,0.097 1|0:1:0,1,0 0|1:0.752:0.391,0.467,0.142 0|0:0.75:0.404,0.442,0.154 1|0:0.673:0.429,0.469,0.102 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.697:0.428,0.446,0.125 0|0:0.565:0.52,0.395,0.085 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.746:0.014,0.226,0.76 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.565:0.52,0.396,0.084 0|0:0:1,0,0 1|0:0.76:0.386,0.469,0.146 0|0:0:1,0,0 0|1:0.657:0.452,0.44,0.108 1|1:2:0,0,1 0|0:0.523:0.562,0.354,0.084 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.448:0.617,0.318,0.065 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.852:0.006,0.137,0.858 1|1:2:0,0,1 1|1:1.815:0.006,0.172,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18779415 SNP-3.18778174. C A . PASS AR2=0.964;DR2=0.972;AF=0.312 GT:DS:GP 0|0:0.034:0.967,0.033,0 1|1:1.761:0.016,0.208,0.776 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.744:0.016,0.225,0.759 1|1:1.569:0.062,0.306,0.632 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.009,0.165,0.826 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.71:0.022,0.245,0.733 1|1:1.539:0.06,0.34,0.599 1|1:1.76:0.015,0.209,0.776 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.813:0.01,0.168,0.822 1|1:1.728:0.019,0.234,0.747 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.449:0.077,0.397,0.526 1|1:1.521:0.061,0.356,0.583 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.598:0.041,0.319,0.639 1|1:1.834:0.006,0.153,0.84 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.895:0.259,0.586,0.154 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.655:0.039,0.268,0.694 1|1:1.756:0.016,0.211,0.772 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.766:0.015,0.203,0.781 0|0:0:1,0,0 1|1:1.637:0.036,0.292,0.673 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.74:0.018,0.224,0.758 1|1:2:0,0,1 1|1:1.942:0.004,0.05,0.946 1|1:1.845:0.007,0.141,0.852 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18779525 SNP-3.18778284. A G . PASS AR2=0.952;DR2=0.961;AF=0.323 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.7:0.31,0.68,0.01 1|1:1.719:0.016,0.25,0.734 0|0:0.021:0.979,0.021,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.055,0.279,0.666 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:1.735:0.023,0.219,0.758 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 1|1:1.646:0.049,0.256,0.695 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.001:0.999,0.001,0 1|0:0.925:0.305,0.466,0.23 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.007,0.125,0.869 0|1:0.887:0.319,0.474,0.206 1|1:1.889:0.004,0.104,0.892 1|1:1.843:0.005,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.034:0.966,0.033,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.52:0.051,0.377,0.572 1|1:2:0,0,1 1|1:1.971:0.001,0.027,0.972 1|1:1.876:0.002,0.12,0.878 1|1:2:0,0,1 0|0:0.222:0.778,0.222,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.993:0.249,0.509,0.242 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:1.571:0.046,0.337,0.617 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.011,0.155,0.834 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.6:0.041,0.317,0.642 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.005,0.174,0.821 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.478:0.068,0.386,0.546 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.016,0.219,0.765 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0,0.049,0.951 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.882:0.002,0.113,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.321:0.106,0.466,0.427 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:1.774:0.009,0.207,0.784 0|0:0:1,0,0 1|0:1.588:0.04,0.332,0.628 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.593:0.044,0.319,0.637 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0,0.065,0.935 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.035:0.268,0.428,0.303 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.577:0.045,0.333,0.622 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18779961 SNP-3.18778720. A G . PASS AR2=0.936;DR2=0.95;AF=0.433 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.228:0.785,0.202,0.013 0|0:0.184:0.821,0.174,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.866,0.125,0.009 0|0:0.228:0.785,0.202,0.013 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.268:0.749,0.234,0.017 0|0:0.279:0.739,0.243,0.018 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.785,0.202,0.013 0|0:0.229:0.784,0.202,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 0|0:0.366:0.667,0.301,0.033 0|0:0.25:0.766,0.218,0.016 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.144:0.858,0.14,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.772:0.379,0.47,0.151 0|0:0.016:0.984,0.015,0 0|1:0.74:0.398,0.465,0.138 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.506:0.573,0.349,0.078 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.822:0.353,0.473,0.175 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.764:0.384,0.468,0.148 0|1:1:0,1,0 0|0:0.121:0.882,0.114,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.15:0.857,0.135,0.007 0|0:0:1,0,0 0|0:0.289:0.759,0.192,0.048 0|0:0:1,0,0 0|0:0.156:0.849,0.145,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.373:0.663,0.302,0.036 1|1:2:0,0,1 0|0:0.553:0.543,0.36,0.097 1|1:2:0,0,1 0|0:0.245:0.77,0.215,0.015 0|0:0.267:0.75,0.233,0.017 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 0|0:0.251:0.765,0.219,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.217:0.795,0.193,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.299:0.724,0.253,0.023 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.859:0.473,0.195,0.332 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.748,0.235,0.017 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.228:0.785,0.202,0.013 0|0:0:1,0,0 0|0:0.662:0.454,0.43,0.116 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.756,0.227,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.226:0.789,0.195,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.751,0.23,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.351:0.681,0.286,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.291:0.731,0.246,0.023 1|1:2:0,0,1 0|0:0.299:0.725,0.252,0.024 0|0:0.291:0.731,0.247,0.022 0|0:0:1,0,0 1|1:2:0,0,1 +3 18784095 SNP-3.18782854. A G . PASS AR2=0.992;DR2=0.993;AF=0.286 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.011,0.988 1|0:1.247:0.005,0.743,0.252 0|0:0:1,0,0 1|1:1.985:0,0.014,0.985 1|1:1.987:0,0.012,0.987 0|0:0:1,0,0 1|1:1.988:0,0.011,0.988 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:1.988:0,0.012,0.988 1|1:1.988:0,0.011,0.988 1|1:1.987:0,0.012,0.988 1|1:1.987:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.653:0,0.347,0.653 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.674,0.292,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.762,0.227,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0,0.171,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:1.987:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 18785749 SNP-3.18784508. A G . PASS AR2=0.914;DR2=0.948;AF=0.313 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.56:0.519,0.402,0.079 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.56:0.519,0.402,0.079 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|1:0.575:0.508,0.409,0.083 0|0:0:1,0,0 0|0:0.514:0.558,0.37,0.072 0|0:0.56:0.519,0.402,0.079 0|0:0:1,0,0 0|0:0.56:0.519,0.402,0.079 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.572:0.51,0.407,0.083 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.204:0.823,0.151,0.026 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.174:0.826,0.174,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.689:0.462,0.386,0.151 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.575:0.508,0.409,0.083 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.589:0.493,0.424,0.082 0|1:0.57:0.511,0.407,0.082 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.611:0.482,0.425,0.093 0|0:0:1,0,0 0|0:0.565:0.515,0.404,0.08 0|0:0.584:0.502,0.413,0.085 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.569:0.513,0.405,0.082 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.587:0.499,0.414,0.086 0|0:0:1,0,0 0|1:0.58:0.505,0.411,0.085 0|0:0.56:0.519,0.402,0.079 1|0:0.57:0.511,0.407,0.082 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.595:0.493,0.419,0.088 1|0:0.56:0.519,0.402,0.079 0|0:0.56:0.519,0.402,0.079 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.579:0.505,0.41,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18786421 SNP-3.18785180. A G . PASS AR2=0.954;DR2=0.965;AF=0.337 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.335:0.005,0.655,0.34 1|1:1.593:0.054,0.3,0.647 1|1:1.882:0.008,0.103,0.889 1|1:2:0,0,1 1|1:1.839:0.002,0.156,0.842 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:1.905:0.005,0.086,0.91 0|1:1.149:0.17,0.511,0.319 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.552:0.047,0.355,0.599 1|1:1.723:0.072,0.133,0.795 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|1:0.978:0.293,0.436,0.271 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.005,0.098,0.897 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.509:0.506,0.479,0.015 1|1:2:0,0,1 0|0:0.1:0.902,0.097,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.001,0.08,0.919 1|1:1.994:0,0.006,0.994 1|1:1.864:0.001,0.135,0.864 1|1:1.605:0.027,0.341,0.632 0|0:0:1,0,0 0|0:0.502:0.546,0.406,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.046:0.222,0.51,0.268 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.427:0.077,0.419,0.504 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.466:0.075,0.383,0.542 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.282:0.098,0.522,0.38 1|1:1.562:0.044,0.35,0.606 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.801:0.019,0.161,0.82 0|0:0:1,0,0 1|0:1.238:0.155,0.452,0.393 1|1:1.578:0.054,0.315,0.632 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.757:0.001,0.242,0.757 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.884:0.009,0.098,0.893 1|1:1.995:0,0.005,0.995 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 +3 18787780 SNP-3.18786539. A G . PASS AR2=0.899;DR2=0.925;AF=0.292 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.791,0.193,0.016 0|0:0:1,0,0 1|1:1.43:0.081,0.407,0.512 1|0:1.201:0.12,0.56,0.321 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.469:0.071,0.389,0.54 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.409:0.636,0.32,0.044 0|1:0.685:0.384,0.548,0.069 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.456:0.075,0.395,0.53 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.637:0.482,0.399,0.119 0|0:0:1,0,0 1|1:1.408:0.091,0.409,0.5 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.236:0.132,0.501,0.367 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.855:0.348,0.449,0.203 0|1:1.034:0.201,0.565,0.234 0|1:1.004:0.222,0.553,0.225 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.886:0.003,0.108,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.831:0.269,0.63,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.2:0.161,0.479,0.36 0|0:0.72:0.43,0.42,0.15 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.297:0.719,0.264,0.016 0|0:0:1,0,0 0|0:0.172:0.847,0.133,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.285:0.149,0.416,0.434 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.355:0.1,0.445,0.455 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.044:0.209,0.538,0.253 0|1:1.479:0.018,0.485,0.497 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.416:0.663,0.259,0.079 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.972:0.197,0.633,0.17 0|0:0.614:0.446,0.495,0.059 1|1:1.615:0.031,0.322,0.646 1|1:1.783:0.012,0.193,0.795 0|0:0:1,0,0 1|0:1.434:0.095,0.376,0.529 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.458:0.598,0.345,0.057 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.796:0.371,0.461,0.168 0|0:0:1,0,0 0|0:0.783:0.384,0.449,0.167 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.245:0.783,0.189,0.028 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.923:0.293,0.491,0.216 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.48:0.068,0.384,0.548 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.676:0.045,0.235,0.721 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.559:0.087,0.268,0.646 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.802,0.182,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.564:0.086,0.264,0.65 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18788889 SNP-3.18787648. A G . PASS AR2=0.987;DR2=0.989;AF=0.242 GT:DS:GP 1|1:1.924:0.003,0.07,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.846:0.006,0.141,0.853 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.164:0.836,0.164,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.731,0.261,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.276:0.732,0.26,0.008 0|0:0.034:0.966,0.034,0 0|0:0.019:0.981,0.019,0 0|0:0.163:0.844,0.15,0.007 0|0:0.002:0.998,0.002,0 0|0:0.252:0.762,0.223,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.005,0.126,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.005,0.104,0.892 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.849:0.007,0.138,0.856 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.848:0.004,0.144,0.852 1|1:2:0,0,1 1|1:1.878:0.005,0.112,0.883 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18789275 SNP-3.18788034. C A . PASS AR2=0.995;DR2=0.996;AF=0.211 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.75:0.008,0.234,0.758 1|1:2:0,0,1 1|0:0.74:0.387,0.485,0.128 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18791188 SNP-3.18789947. A G . PASS AR2=0.977;DR2=0.979;AF=0.234 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.066,0.933 0|0:0.035:0.965,0.035,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.143:0.863,0.132,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.117:0.888,0.107,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.007,0.164,0.829 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.003,0.117,0.88 1|1:2:0,0,1 0|0:0.08:0.925,0.071,0.004 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.106:0.902,0.091,0.008 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.853,0.14,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.795,0.197,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.849,0.151,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.851,0.142,0.006 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.163:0.843,0.15,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.073:0.928,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.01,0.075,0.915 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.157:0.853,0.137,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:1.885:0.002,0.111,0.887 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.933:0.287,0.494,0.22 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.298:0.724,0.253,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.821,0.17,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.222:0.797,0.183,0.02 0|0:0:1,0,0 1|1:1.782:0.013,0.193,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18791989 SNP-3.18790748. C A . PASS AR2=0.95;DR2=0.962;AF=0.488 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.107:0.895,0.103,0.002 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.464:0.59,0.356,0.054 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.803,0.186,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.458:0.592,0.358,0.05 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.336:0.123,0.418,0.459 0|0:0.315:0.712,0.262,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.3:0.722,0.256,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.141:0.205,0.449,0.346 0|0:0:1,0,0 0|0:0.286:0.735,0.244,0.021 0|0:0:1,0,0 0|0:0.225:0.788,0.199,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.862,0.13,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.765,0.219,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.995:0.307,0.391,0.302 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.002,0.081,0.917 0|0:0.076:0.93,0.064,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|1:1.324:0.065,0.545,0.39 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.128:0.142,0.588,0.27 1|1:1.922:0.002,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.564:0.454,0.529,0.018 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.217:0.793,0.197,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.399:0.647,0.307,0.046 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0.296:0.723,0.257,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.206:0.805,0.184,0.011 0|0:0:1,0,0 0|0:0.158:0.848,0.146,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.262:0.756,0.226,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.002,0.066,0.933 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.095:0.909,0.087,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.799,0.19,0.011 0|0:0.57:0.506,0.419,0.076 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.752:0.462,0.323,0.214 1|1:2:0,0,1 0|0:0.244:0.768,0.221,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.002,0.06,0.938 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.329:0.703,0.266,0.031 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.659:0,0.341,0.659 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.807,0.181,0.011 0|0:0:1,0,0 0|0:0.191:0.83,0.149,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.126:0.882,0.11,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18792338 SNP-3.18791097. C A . PASS AR2=0.999;DR2=0.999;AF=0.362 GT:DS:GP 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.004,0.051,0.945 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18792424 SNP-3.18791183. C A . PASS AR2=0.974;DR2=0.981;AF=0.505 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.87:0.003,0.124,0.873 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:1.817:0.015,0.153,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.569:0.053,0.326,0.622 1|1:2:0,0,1 0|0:0.147:0.866,0.122,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.69:0.458,0.394,0.148 1|1:2:0,0,1 0|1:1.201:0.007,0.785,0.208 0|1:0.698:0.452,0.397,0.15 1|1:1.943:0.003,0.051,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 1|1:1.944:0,0.056,0.944 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:1.931:0.001,0.067,0.932 0|1:0.696:0.454,0.396,0.15 1|0:0.987:0.199,0.615,0.186 1|1:1.891:0.003,0.103,0.894 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.078:0.006,0.909,0.085 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.003,0.078,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.332:0.698,0.273,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.854:0.004,0.137,0.858 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.041,0.958 1|1:2:0,0,1 1|1:1.926:0.001,0.071,0.928 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:1.909:0.003,0.084,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0,0.179,0.821 0|0:0:1,0,0 1|1:1.915:0.003,0.079,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.008,0.15,0.843 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.001,0.163,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18792649 SNP-3.18791408. C A . PASS AR2=0.979;DR2=0.982;AF=0.485 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.886:0.003,0.108,0.889 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.806,0.19,0.004 0|0:0:1,0,0 0|0:0.418:0.625,0.331,0.043 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.71,0.269,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.912,0.083,0.004 0|0:0:1,0,0 1|1:1.855:0.009,0.127,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.861:0.009,0.121,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.897:0.003,0.096,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.002,0.105,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.001,0.111,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.069,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.817:0.011,0.16,0.829 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.003,0.094,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.782:0.013,0.193,0.794 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.001,0.117,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.092,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 1|1:1.928:0.002,0.069,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.122:0.884,0.111,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.129:0.877,0.117,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.148:0.854,0.144,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.004,0.119,0.876 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.014,0.156,0.829 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.004,0.114,0.882 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.779,0.208,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.893,0.105,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.01,0.128,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.719:0.02,0.242,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18792735 SNP-3.18791494. A G . PASS AR2=0.989;DR2=0.993;AF=0.259 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.023,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.563:0.514,0.41,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.589:0.498,0.414,0.088 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.696:0.426,0.452,0.122 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18792809 SNP-3.18791568. C A . PASS AR2=0.986;DR2=0.989;AF=0.426 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.025:0.975,0.025,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.842,0.143,0.014 0|0:0.053:0.948,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0.292:0.743,0.222,0.035 0|0:0.25:0.766,0.218,0.016 0|0:0:1,0,0 0|0:0.105:0.897,0.102,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.966,0.033,0.002 0|0:0.13:0.886,0.098,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.467:0.586,0.36,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 0|0:0.032:0.969,0.03,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.194:0.82,0.167,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.86,0.134,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.947,0.051,0.001 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0.001,0.028,0.971 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0.103:0.901,0.095,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.044,0.001 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.756,0.244,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.943,0.056,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.912,0.083,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18793195 SNP-3.18791954. C A . PASS AR2=0.976;DR2=0.986;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.354:0.675,0.296,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.008,0.143,0.849 1|1:1.995:0,0.005,0.995 0|0:0.571:0.514,0.402,0.084 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.595:0.497,0.411,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.611:0.477,0.436,0.087 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.596:0.496,0.411,0.093 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.866,0.129,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.606:0.48,0.434,0.086 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.631:0.47,0.429,0.101 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18793546 SNP-3.18792305. C A . 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C A . PASS AR2=0.972;DR2=0.981;AF=0.317 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.008,0.153,0.839 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0,0.076,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.404:0.105,0.386,0.509 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.394:0.107,0.391,0.502 1|1:2:0,0,1 0|0:0.217:0.803,0.177,0.02 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.679:0.009,0.302,0.689 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.782:0.011,0.196,0.793 1|0:1.396:0.107,0.39,0.503 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.887:0.003,0.106,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.504:0.068,0.359,0.573 1|1:2:0,0,1 1|1:1.823:0.011,0.155,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.831:0.009,0.152,0.84 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.201:0.222,0.356,0.423 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.004,0.062,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18798764 SNP-3.18797523. C A . PASS AR2=0.977;DR2=0.982;AF=0.444 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.016:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.234:0.78,0.205,0.015 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.929:0.003,0.065,0.932 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.746:0.395,0.464,0.141 1|1:2:0,0,1 0|0:0.395:0.66,0.286,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.434:0.625,0.315,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.791,0.176,0.033 0|0:0.157:0.844,0.154,0.002 0|0:0.239:0.787,0.187,0.026 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.783,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.001,0.07,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 0|0:0.164:0.838,0.159,0.003 0|0:0.044:0.957,0.041,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.802,0.186,0.013 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.368:0.678,0.275,0.047 0|0:0.068:0.933,0.065,0.001 0|0:0.263:0.761,0.215,0.024 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.069,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.608:0.408,0.576,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18802486 SNP-3.18801245. A G . PASS AR2=0.951;DR2=0.962;AF=0.282 GT:DS:GP 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.006,0.131,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.866:0.005,0.123,0.872 0|0:0:1,0,0 0|0:0.225:0.788,0.198,0.014 1|1:1.875:0.005,0.116,0.88 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.19:0.83,0.15,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.002,0.15,0.848 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.82:0.365,0.45,0.185 0|0:0.271:0.749,0.232,0.019 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.232:0.783,0.203,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.718:0.422,0.437,0.141 0|0:0.169:0.837,0.157,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0.106:0.899,0.096,0.005 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.831,0.163,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.7:0.02,0.26,0.72 1|1:2:0,0,1 0|0:0.028:0.972,0.027,0.001 1|1:2:0,0,1 1|1:1.943:0.003,0.052,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:1.882:0.007,0.103,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.639:0.428,0.506,0.067 0|0:0.11:0.894,0.102,0.004 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.783,0.203,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.734:0.304,0.658,0.038 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.907:0.004,0.086,0.911 1|1:1.857:0.005,0.132,0.862 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.23:0.784,0.202,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.226:0.788,0.199,0.014 0|0:0.23:0.784,0.201,0.015 1|1:1.821:0.005,0.168,0.826 1|1:2:0,0,1 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 1|1:1.886:0.003,0.107,0.89 1|1:1.502:0.066,0.367,0.567 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.026:0.403,0.169,0.428 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.004,0.063,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.856:0.005,0.134,0.861 1|1:1.925:0.003,0.069,0.928 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.764,0.221,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.925,0.074,0.001 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 +3 18805281 SNP-3.18804040. A G . PASS AR2=0.969;DR2=0.978;AF=0.503 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.366:0.127,0.38,0.493 0|0:0:1,0,0 1|1:1.953:0.003,0.042,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.882:0.001,0.117,0.882 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0.106:0.901,0.092,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.205:0.808,0.18,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.828:0.006,0.16,0.834 1|1:1.955:0.001,0.044,0.955 1|1:1.988:0,0.012,0.988 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.944:0.001,0.055,0.945 1|1:1.937:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:1.94:0.001,0.058,0.941 1|1:2:0,0,1 1|1:1.885:0,0.115,0.885 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:1.936:0.002,0.059,0.939 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.965 1|1:1.955:0.001,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.734:0.016,0.233,0.751 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.515:0.183,0.119,0.698 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0,0.069,0.931 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.989:0,0.01,0.99 1|1:2:0,0,1 0|0:0.393:0.632,0.343,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.014,0.207,0.778 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.35:0.158,0.334,0.508 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:1.617:0.036,0.311,0.653 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.114:0.892,0.102,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.211:0.807,0.175,0.018 1|1:2:0,0,1 0|0:0.556:0.567,0.31,0.123 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.116:0.891,0.103,0.006 1|1:2:0,0,1 0|0:0.4:0.659,0.282,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.748,0.229,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18805487 SNP-3.18804246. A G . PASS AR2=0.971;DR2=0.977;AF=0.544 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.927:0.002,0.069,0.929 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.882:0.004,0.111,0.886 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.841:0.007,0.145,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.792,0.192,0.016 0|0:0.292:0.734,0.24,0.026 0|0:0.245:0.773,0.21,0.017 1|1:1.911:0.002,0.084,0.914 1|1:1.945:0.002,0.051,0.947 0|0:0:1,0,0 1|1:1.881:0.004,0.111,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0,0.051,0.949 0|0:0:1,0,0 1|1:1.834:0.008,0.15,0.842 1|1:1.876:0.007,0.111,0.882 1|1:1.85:0.004,0.143,0.854 1|1:1.684:0.032,0.253,0.715 1|1:2:0,0,1 1|1:1.773:0.01,0.207,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.087,0.911 1|1:2:0,0,1 1|1:1.928:0.002,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.876:0.005,0.113,0.882 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.15:0.86,0.131,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.04,0.213,0.746 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.533:0.06,0.346,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 0|0:0.021:0.979,0.02,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.025,0.23,0.745 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.487:0.06,0.394,0.546 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.659:0.034,0.273,0.693 1|1:2:0,0,1 1|0:1.256:0.12,0.503,0.376 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.911:0.002,0.084,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.508:0.104,0.284,0.612 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.899:0.002,0.098,0.9 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.263:0.759,0.219,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18807288 SNP-3.18806047. C A . PASS AR2=0.97;DR2=0.978;AF=0.455 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.388:0.634,0.344,0.022 1|1:1.804:0.01,0.175,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.743,0.23,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.843,0.137,0.019 1|0:0.583:0.503,0.412,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0.52:0.565,0.351,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0.017:0.983,0.017,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.822,0.173,0.005 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.239:0.761,0.239,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.935,0.064,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.224:0.787,0.202,0.011 1|1:2:0,0,1 0|0:0.39:0.642,0.327,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.513:0.578,0.331,0.091 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.732,0.249,0.019 0|0:0.219:0.797,0.188,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0.251:0.764,0.221,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.755,0.221,0.024 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0.175:0.834,0.157,0.009 0|0:0.492:0.578,0.352,0.07 1|1:1.947:0,0.053,0.947 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.391:0.65,0.31,0.04 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.908,0.088,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.069,0.001 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 +3 18808258 SNP-3.18807017. C A . PASS AR2=0.99;DR2=0.993;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.358:0.679,0.283,0.037 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.859:0.335,0.472,0.193 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.034,0.965 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.597:0.525,0.352,0.123 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.801,0.179,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18808464 SNP-3.18807223. C A . PASS AR2=0.978;DR2=0.979;AF=0.353 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.002,0.112,0.886 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.006:0.257,0.48,0.263 0|0:0.888:0.311,0.489,0.199 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.847:0.337,0.478,0.184 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.239:0.146,0.468,0.385 1|1:1.95:0.001,0.047,0.951 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.062:0.94,0.058,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.239:0.146,0.468,0.386 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.859:0.327,0.487,0.186 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.917:0.295,0.494,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.875:0.318,0.489,0.193 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.013,0.116,0.871 0|0:0:1,0,0 +3 18808696 SNP-3.18807455. A G . PASS AR2=0.973;DR2=0.979;AF=0.316 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.013,0.192,0.795 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.372:0.131,0.366,0.503 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.67:0.029,0.272,0.699 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.752:0.016,0.216,0.768 1|1:2:0,0,1 0|0:0.136:0.866,0.132,0.002 1|1:1.705:0.021,0.254,0.726 1|1:2:0,0,1 0|0:0.385:0.67,0.274,0.056 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.302:0.129,0.441,0.43 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.777,0.202,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.029,0.269,0.702 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.716:0.023,0.237,0.74 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.06:0.942,0.055,0.003 0|0:0.053:0.947,0.053,0 1|1:1.681:0.028,0.264,0.708 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.728:0.022,0.228,0.75 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.68:0.028,0.264,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.722:0.021,0.237,0.743 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 +3 18809082 SNP-3.18807841. A G . PASS AR2=0.993;DR2=0.995;AF=0.245 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.492:0.561,0.385,0.053 1|1:1.699:0.011,0.279,0.71 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.084,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.847:0.006,0.14,0.854 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.004,0.062,0.934 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18812689 SNP-3.18811448. C A . PASS AR2=0.977;DR2=0.984;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 1|1:1.941:0,0.058,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.847,0.124,0.029 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0.001 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.871:0.003,0.124,0.874 1|1:2:0,0,1 0|0:0.332:0.701,0.266,0.033 1|1:2:0,0,1 0|0:0.714:0.42,0.447,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0,0.069,0.931 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0,0.058,0.942 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.899:0.004,0.093,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.005,0.095,0.9 1|1:2:0,0,1 0|0:0.969:0.409,0.214,0.378 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.002,0.137,0.861 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.624:0.564,0.248,0.188 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.942:0.001,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.915:0.004,0.077,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0,0.065,0.935 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18813873 SNP-3.18812632. A G . PASS AR2=0.969;DR2=0.976;AF=0.547 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.804:0.009,0.177,0.814 1|1:2:0,0,1 1|1:1.964:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.749:0.022,0.207,0.771 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.809:0.009,0.172,0.818 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.815:0.009,0.167,0.824 1|1:2:0,0,1 1|1:1.798:0.011,0.181,0.809 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.769:0.014,0.204,0.782 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.629:0.027,0.317,0.656 0|1:1.459:0.042,0.458,0.501 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.774:0.013,0.2,0.787 1|1:2:0,0,1 1|1:1.754:0.015,0.217,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.533:0.093,0.281,0.626 1|1:1.819:0.01,0.162,0.829 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.655:0.033,0.279,0.688 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.71:0.021,0.247,0.732 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.01,0.183,0.807 1|1:1.581:0.085,0.249,0.666 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 1|1:1.917:0.002,0.079,0.919 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.006,0.126,0.869 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.007,0.147,0.847 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.6:0.04,0.321,0.64 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.168:0.862,0.109,0.03 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.808:0.009,0.173,0.818 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.766:0.014,0.206,0.78 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.011,0.183,0.807 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.044,0.955 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18815144 SNP-3.18813903. A G . PASS AR2=0.904;DR2=0.927;AF=0.281 GT:DS:GP 1|1:1.88:0.001,0.118,0.881 0|0:0:1,0,0 0|0:0.283:0.742,0.233,0.025 0|0:0:1,0,0 0|0:0.208:0.806,0.18,0.014 1|1:2:0,0,1 0|0:0.326:0.709,0.255,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.168:0.84,0.151,0.008 1|1:1.917:0.002,0.079,0.919 0|0:0:1,0,0 0|0:0.974:0.324,0.379,0.298 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.283:0.129,0.459,0.412 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.701:0.388,0.523,0.089 1|1:2:0,0,1 0|0:0.255:0.767,0.212,0.021 1|1:1.07:0.335,0.26,0.405 0|0:0.45:0.627,0.296,0.077 0|0:0:1,0,0 0|0:0.197:0.816,0.172,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.648:0.423,0.505,0.072 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.943:0.261,0.536,0.204 1|0:0.888:0.289,0.534,0.177 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.228:0.185,0.401,0.414 1|1:1.235:0.123,0.519,0.358 0|1:1.323:0.124,0.428,0.447 1|1:2:0,0,1 1|1:1.771:0.008,0.212,0.779 1|1:1.542:0.008,0.442,0.55 1|1:2:0,0,1 1|1:1.859:0.005,0.13,0.864 1|1:1.973:0,0.026,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.006,0.143,0.851 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.004,0.09,0.906 1|1:2:0,0,1 0|0:0.192:0.823,0.163,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.782:0.02,0.178,0.802 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.885:0.003,0.109,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.063:0.244,0.448,0.308 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.537:0.101,0.262,0.638 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.374:0.659,0.308,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.844,0.149,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.208:0.806,0.18,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.416:0.619,0.346,0.035 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.042:0.252,0.454,0.294 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.331:0.704,0.261,0.035 0|1:1.095:0.226,0.453,0.321 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.502:0.074,0.35,0.576 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.816,0.173,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.147:0.861,0.131,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.509:0.566,0.358,0.075 1|1:1.442:0.133,0.292,0.575 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.59:0.104,0.203,0.693 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.146:0.862,0.129,0.008 1|1:1.914:0.002,0.082,0.916 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18817425 SNP-3.18816184. A G . PASS AR2=0.936;DR2=0.953;AF=0.325 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.895,0.1,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.899:0.393,0.315,0.292 1|0:1.503:0.063,0.37,0.566 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.601:0.466,0.467,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0.451:0.604,0.341,0.055 0|0:0.51:0.524,0.442,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.077:0.145,0.633,0.222 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.499:0.072,0.358,0.571 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.965 1|1:2:0,0,1 1|1:1.827:0.01,0.154,0.836 1|1:1.779:0.012,0.197,0.791 1|1:1.837:0.009,0.145,0.846 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.786:0.014,0.186,0.8 1|1:2:0,0,1 1|1:1.702:0,0.298,0.702 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.772:0.013,0.203,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.77:0.016,0.198,0.786 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.018,0.232,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.729:0.019,0.233,0.748 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.654:0.052,0.243,0.705 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.912:0.003,0.082,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.78,0.207,0.014 0|0:0:1,0,0 0|0:0.065:0.937,0.061,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.775:0.013,0.2,0.787 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.914,0.084,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0.001 1|1:1.8:0.013,0.174,0.813 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.921:0.001,0.077,0.922 0|0:0:1,0,0 0|1:0.566:0.499,0.437,0.064 0|0:0:1,0,0 1|1:1.575:0.036,0.352,0.611 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 1|0:0.665:0.461,0.413,0.126 0|0:0.896:0.3,0.504,0.196 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.838:0.321,0.52,0.159 1|1:2:0,0,1 1|1:1.11:0.185,0.52,0.295 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.009,0.147,0.844 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.398:0.114,0.374,0.512 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.236:0.765,0.235,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 1|1:1.79:0.011,0.188,0.801 +3 18826402 SNP-3.18825161. A G . PASS AR2=0.885;DR2=0.922;AF=0.235 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.672:0.443,0.442,0.115 0|0:0:1,0,0 1|0:0.569:0.514,0.404,0.082 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.489:0.589,0.333,0.078 0|0:0.467:0.588,0.357,0.055 1|1:1.457:0.075,0.393,0.532 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.352:0.682,0.284,0.034 1|0:0.679:0.437,0.447,0.116 0|0:0.195:0.833,0.138,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.839:0.382,0.397,0.221 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.474:0.583,0.361,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.62:0.472,0.435,0.093 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.81:0.389,0.412,0.199 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.486:0.581,0.351,0.067 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.439:0.078,0.405,0.517 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.195:0.825,0.156,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.294:0.128,0.451,0.421 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.45:0.073,0.403,0.523 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.183:0.845,0.127,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.327:0.138,0.398,0.464 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.83:0.348,0.475,0.177 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.413:0.107,0.372,0.521 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.072,0.003 0|0:0.479:0.578,0.364,0.058 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.425:0.089,0.397,0.514 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.002 0|0:0:1,0,0 1|1:1.909:0.005,0.081,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.001,0.092,0.907 0|0:0:1,0,0 0|0:0.609:0.477,0.438,0.086 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.124,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.363:0.087,0.463,0.45 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.084:0.918,0.079,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.268:0.167,0.398,0.435 0|0:0:1,0,0 0|0:0.125:0.88,0.115,0.005 0|0:0.506:0.559,0.377,0.064 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.406:0.652,0.291,0.057 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.363:0.105,0.427,0.468 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1.458:0.093,0.355,0.552 0|0:0:1,0,0 1|1:1.128:0.215,0.442,0.343 +3 18828845 SNP-3.18827604. C A . PASS AR2=0.939;DR2=0.954;AF=0.388 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.423:0.622,0.333,0.045 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.193:0.807,0.193,0 1|0:0.579:0.503,0.414,0.083 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.162:0.846,0.146,0.008 0|0:0.303:0.72,0.257,0.023 0|0:0:1,0,0 0|0:0.564:0.572,0.291,0.137 0|0:0.146:0.859,0.136,0.005 1|1:2:0,0,1 0|0:0.378:0.662,0.298,0.04 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.264:0.75,0.236,0.014 0|0:0:1,0,0 0|0:0.248:0.769,0.214,0.017 0|0:0.408:0.634,0.324,0.042 0|0:0:1,0,0 0|0:0.521:0.544,0.39,0.066 0|1:1:0,1,0 0|0:0.292:0.734,0.239,0.027 0|0:0.376:0.66,0.304,0.036 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0.123:0.882,0.112,0.005 0|0:0.244:0.77,0.217,0.014 0|0:0.134:0.869,0.128,0.003 0|0:0:1,0,0 0|0:0.181:0.822,0.176,0.002 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.002 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.639:0.033,0.296,0.672 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.569:0.047,0.336,0.617 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.76,0.229,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.161:0.848,0.143,0.009 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.195:0.816,0.173,0.011 0|0:0.111:0.892,0.104,0.003 0|0:0.268:0.75,0.232,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.818:0.316,0.549,0.135 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.938,0.061,0.001 1|1:2:0,0,1 0|0:0.603:0.488,0.421,0.091 0|0:0.387:0.651,0.311,0.038 1|1:2:0,0,1 0|1:0.375:0.661,0.304,0.035 0|0:0.089:0.914,0.084,0.003 0|0:0.422:0.623,0.332,0.045 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.101,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.57:0.508,0.414,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.85,0.144,0.006 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.427:0.621,0.331,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.697:0.43,0.442,0.128 1|1:2:0,0,1 0|0:0.311:0.713,0.262,0.024 0|0:0.154:0.855,0.137,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.915,0.085,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18829038 SNP-3.18827797. C A . PASS AR2=0.906;DR2=0.928;AF=0.212 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.779,0.207,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.648:0.46,0.433,0.107 0|0:0.166:0.843,0.149,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.351:0.687,0.275,0.038 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.361:0.679,0.281,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.659,0.32,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.327:0.703,0.266,0.031 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.802,0.182,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.166:0.201,0.432,0.367 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.638:0.467,0.428,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.297:0.046,0.612,0.343 0|0:0:1,0,0 0|0:0.564:0.497,0.441,0.062 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.304:0.725,0.245,0.03 0|0:0:1,0,0 0|0:0.339:0.693,0.274,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.838,0.15,0.012 1|1:2:0,0,1 0|0:0.357:0.674,0.295,0.031 0|0:0.171:0.832,0.165,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.617:0.476,0.43,0.094 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.689,0.277,0.033 0|0:0:1,0,0 0|0:0.298:0.726,0.251,0.023 0|0:0.279:0.74,0.24,0.02 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.122:0.194,0.49,0.316 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.294:0.727,0.252,0.021 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.17:0.841,0.147,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.86:0.321,0.497,0.182 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.001 0|0:0.457:0.599,0.345,0.056 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.937,0.063,0.001 0|0:0.148:0.859,0.135,0.006 0|0:0:1,0,0 1|0:0.895:0.267,0.571,0.162 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.931,0.068,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.707:0.422,0.449,0.129 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.726:0.398,0.478,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.727,0.25,0.023 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.846,0.146,0.009 0|0:0.224:0.792,0.192,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.361:0.679,0.281,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.861,0.132,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.727,0.25,0.023 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0.046:0.955,0.043,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.384:0.659,0.297,0.044 +3 18834871 SNP-3.18833630. C A . PASS AR2=0.993;DR2=0.994;AF=0.323 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.33:0.702,0.265,0.033 1|1:2:0,0,1 0|0:0.724:0.412,0.451,0.137 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0.008:0.992,0.008,0 0|0:0.022:0.978,0.021,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.808:0.381,0.43,0.189 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18834928 SNP-3.18833687. A G . PASS AR2=0.947;DR2=0.959;AF=0.278 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.686:0.432,0.45,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.543:0.531,0.395,0.074 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.547:0.537,0.379,0.084 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.792,0.2,0.007 0|0:0.405:0.642,0.311,0.047 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.75:0.393,0.464,0.143 0|1:0.876:0.314,0.496,0.19 0|0:0.125:0.879,0.117,0.004 0|0:0.064:0.938,0.061,0.001 0|0:0.155:0.854,0.137,0.009 0|0:0.406:0.627,0.341,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.334:0.035,0.596,0.369 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.429:0.001,0.57,0.43 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.69:0.014,0.283,0.703 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.046,0.002 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.737,0.22,0.043 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.29:0.744,0.223,0.033 0|0:0:1,0,0 0|0:0.466:0.588,0.358,0.054 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.763:0.383,0.47,0.146 0|0:0.026:0.974,0.026,0 0|0:0.744:0.396,0.463,0.141 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0.089:0.915,0.081,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.796:0.369,0.466,0.165 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.599:0.491,0.419,0.09 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 1|0:0.911:0.301,0.487,0.212 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18835579 SNP-3.18834338. A G . PASS AR2=0.868;DR2=0.883;AF=0.448 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.939:0.278,0.506,0.216 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.013:0.987,0.013,0 0|1:0.901:0.301,0.497,0.202 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.962:0.264,0.509,0.227 0|0:0:1,0,0 1|0:0.872:0.319,0.489,0.191 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.012:0.247,0.493,0.259 1|1:2:0,0,1 0|0:0.914:0.297,0.493,0.21 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.86:0.326,0.488,0.186 0|0:0.701:0.442,0.416,0.143 0|0:0.861:0.326,0.488,0.187 0|1:0.885:0.312,0.492,0.196 1|0:1:0,1,0 0|0:0.699:0.455,0.392,0.153 0|0:0.963:0.274,0.488,0.237 1|0:0.945:0.278,0.5,0.222 1|0:1.114:0.186,0.514,0.3 0|1:1.154:0.182,0.482,0.336 0|1:1.535:0.009,0.446,0.544 0|0:0.1:0.9,0.099,0 0|0:0.488:0.529,0.454,0.017 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0.445:0.563,0.429,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.003,0.099,0.898 1|1:2:0,0,1 1|1:1.915:0.002,0.08,0.918 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 1|1:1.813:0.005,0.178,0.818 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.859:0.327,0.488,0.185 1|1:1.857:0.003,0.136,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.336:0.1,0.465,0.436 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.769:0.018,0.195,0.787 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.002,0.08,0.918 0|1:1.191:0.151,0.507,0.342 1|1:2:0,0,1 1|0:1.273:0.137,0.453,0.41 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.991:0.25,0.508,0.242 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.875:0.318,0.49,0.193 0|0:0.874:0.319,0.489,0.193 1|0:0.84:0.338,0.484,0.178 0|1:0.86:0.326,0.488,0.186 0|1:1.115:0.19,0.505,0.305 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.862:0.325,0.488,0.187 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.864:0.324,0.488,0.188 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.636:0.49,0.385,0.125 0|1:1:0,1,0 0|0:0.863:0.325,0.488,0.187 1|0:0.863:0.325,0.488,0.187 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.95:0.001,0.047,0.952 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.27:0.138,0.454,0.408 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.915:0.002,0.08,0.918 1|1:2:0,0,1 1|0:0.915:0.292,0.5,0.208 1|0:1.013:0.252,0.484,0.265 0|0:0.995:0.26,0.485,0.255 1|0:1.293:0.131,0.445,0.424 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.773:0.018,0.191,0.791 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.863:0.325,0.488,0.187 0|0:0:1,0,0 1|0:0.86:0.326,0.488,0.186 0|1:0.738:0.412,0.438,0.15 0|0:0.863:0.324,0.488,0.187 1|1:2:0,0,1 1|0:0.858:0.327,0.488,0.185 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.859:0.327,0.488,0.186 0|0:0.863:0.324,0.488,0.187 0|1:0.855:0.329,0.487,0.184 1|0:0.864:0.324,0.488,0.188 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.875,0.106,0.018 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0.261:0.743,0.254,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.859:0.327,0.488,0.185 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.841,0.126,0.033 1|1:1.915:0.002,0.081,0.917 0|0:0.006:0.994,0.006,0 0|0:0.046:0.955,0.045,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18852669 SNP-3.18851428. A G . PASS AR2=0.899;DR2=0.915;AF=0.317 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.052:0.224,0.499,0.276 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.26:0.157,0.426,0.417 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.044:0.23,0.497,0.274 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.347:0.682,0.289,0.029 1|0:1.064:0.244,0.447,0.309 0|1:0.957:0.285,0.472,0.242 0|0:0.197:0.821,0.16,0.019 1|1:2:0,0,1 0|1:1.07:0.217,0.496,0.287 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.958:0.293,0.457,0.251 1|0:1.019:0.233,0.515,0.252 1|1:2:0,0,1 0|1:0.697:0.368,0.568,0.064 0|0:0:1,0,0 0|1:1.011:0.225,0.538,0.236 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.051:0.951,0.048,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.482:0.084,0.35,0.566 1|0:1.157:0.175,0.493,0.332 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.396:0.096,0.412,0.492 1|1:2:0,0,1 0|0:0.073:0.93,0.068,0.003 1|1:2:0,0,1 0|0:0.05:0.951,0.047,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.082:0.922,0.075,0.003 1|1:2:0,0,1 1|1:1.89:0.003,0.105,0.893 1|1:2:0,0,1 1|1:1.458:0.063,0.416,0.521 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.872,0.126,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.015,0.13,0.854 1|1:1.537:0.034,0.396,0.571 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.536:0.056,0.352,0.592 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.032,0.265,0.703 0|0:0:1,0,0 0|1:1.268:0.14,0.453,0.407 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.436:0.092,0.381,0.528 1|1:2:0,0,1 0|0:0.05:0.951,0.047,0.002 0|0:0.569:0.502,0.428,0.07 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|1:1.171:0.191,0.446,0.362 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.969:0.275,0.48,0.245 0|0:1.018:0.241,0.499,0.259 0|0:1.06:0.222,0.497,0.282 1|1:2:0,0,1 1|0:0.701:0.436,0.427,0.137 0|0:0.05:0.951,0.047,0.002 0|0:0.035:0.965,0.035,0 1|1:1.863:0.007,0.123,0.87 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.092:0.207,0.494,0.299 0|0:0.006:0.994,0.006,0 1|0:1.052:0.226,0.497,0.278 0|0:0:1,0,0 1|0:0.682:0.319,0.681,0.001 1|0:1.079:0.213,0.496,0.291 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.19:0.81,0.19,0 0|0:0.074:0.927,0.073,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.951,0.047,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.214:0.159,0.469,0.373 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.053:0.225,0.496,0.278 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.051:0.226,0.496,0.277 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.959:0.285,0.472,0.243 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.004:0.996,0.004,0 0|0:0.016:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.089:0.911,0.089,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.051:0.226,0.496,0.277 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18855626 SNP-3.18854385. C A . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.998:0.002,0.998,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18863952 SNP-3.18862711. A G . PASS AR2=0.999;DR2=0.999;AF=0.202 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.818:0.01,0.162,0.828 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18865056 SNP-3.18863815. C A . 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A G . 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A G . PASS AR2=0.98;DR2=0.984;AF=0.443 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.672:0.027,0.273,0.699 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.317:0.083,0.517,0.4 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.014,0.199,0.787 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.872:0.009,0.109,0.881 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.743:0.016,0.224,0.759 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.354:0.647,0.353,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.705:0.022,0.252,0.726 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.648:0.032,0.289,0.679 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.688:0.025,0.263,0.712 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.99:0.13,0.75,0.12 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.771:0.011,0.206,0.783 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.69:0.024,0.261,0.714 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.756:0.019,0.207,0.774 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.023,0.257,0.72 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18865748 SNP-3.18864507. C A . PASS AR2=0.988;DR2=0.991;AF=0.307 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.965 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.285:0.741,0.233,0.026 1|1:1.983:0,0.017,0.983 0|0:0.669:0.452,0.426,0.122 0|0:0:1,0,0 1|1:1.867:0,0.133,0.867 0|0:0.007:0.993,0.007,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.993:0,0.007,0.993 1|1:1.867:0.009,0.115,0.876 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.942:0.002,0.054,0.944 0|0:0:1,0,0 1|1:1.957:0,0.043,0.957 0|0:0.004:0.996,0.004,0 1|1:1.614:0.032,0.323,0.646 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.001,0.148,0.851 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.935:0.002,0.061,0.937 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.005,0.149,0.846 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0.001,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18866029 SNP-3.18864788. C A . PASS AR2=0.997;DR2=0.997;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.712,0.288,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:1.982:0,0.017,0.982 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.963:0,0.036,0.963 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.946:0.001,0.053,0.947 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.887,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18866047 SNP-3.18864806. C A . PASS AR2=0.968;DR2=0.972;AF=0.434 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.908:0.109,0.875,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.373:0.096,0.435,0.469 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.268:0.134,0.463,0.402 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.179:0.154,0.513,0.333 0|1:0.653:0.35,0.648,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.176:0.174,0.475,0.35 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.179:0.173,0.474,0.352 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.179:0.173,0.474,0.352 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:0.963:0.059,0.919,0.022 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.176:0.174,0.475,0.35 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.176:0.174,0.475,0.35 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.179:0.173,0.474,0.352 1|0:1.214:0.181,0.424,0.395 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.964:0.057,0.921,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.982:0.056,0.905,0.038 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.298:0.124,0.454,0.422 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.176:0.174,0.475,0.35 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18866067 SNP-3.18864826. C A . PASS AR2=0.995;DR2=0.996;AF=0.383 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0.054,0.891,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.765:0.241,0.753,0.006 0|0:0:1,0,0 0|0:0.269:0.734,0.262,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.053:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.607:0.393,0.607,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18866089 SNP-3.18864848. C A . PASS AR2=0.998;DR2=0.998;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.045,0.955 1|1:1.994:0,0.006,0.994 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:1.952:0.001,0.047,0.952 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.002,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18866323 SNP-3.18865082. C A . PASS AR2=0.992;DR2=0.994;AF=0.4 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.444:0.566,0.424,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.142:0.859,0.14,0.001 0|0:0:1,0,0 0|0:0.224:0.778,0.22,0.002 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.13:0.882,0.107,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.059:0.942,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.194:0.81,0.187,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.089:0.913,0.084,0.002 1|1:2:0,0,1 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.195:0.807,0.191,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18868242 SNP-3.18867001. C A . PASS AR2=0.988;DR2=0.992;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.441:0.08,0.4,0.521 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.426:0.084,0.405,0.511 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.685:0.037,0.241,0.722 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.717:0.019,0.245,0.736 1|1:1.862:0.004,0.13,0.866 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.009,0.196,0.795 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.152:0.848,0.152,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 18868282 SNP-3.18867041. A G . PASS AR2=1;DR2=1;AF=0.241 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.076:0.001,0.923,0.077 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18868406 SNP-3.18867165. C A . PASS AR2=0.978;DR2=0.981;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.004,0.078,0.918 1|1:1.849:0.007,0.136,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.166:0.839,0.156,0.005 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.001 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.742,0.238,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.033:0.967,0.032,0 0|0:0.076:0.925,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.002,0.154,0.844 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0.003,0.068,0.929 1|1:1.995:0,0.005,0.995 1|1:1.891:0.001,0.107,0.892 1|1:1.972:0,0.028,0.972 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.003,0.064,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 1|1:1.913:0.004,0.08,0.916 1|1:1.807:0.013,0.168,0.819 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:1.822:0.009,0.161,0.831 1|1:1.919:0.001,0.078,0.921 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.911:0.004,0.08,0.915 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.003,0.066,0.93 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.046,0.953 1|1:1.878:0.005,0.113,0.882 1|1:1.95:0.002,0.046,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.728:0.032,0.207,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.742,0.238,0.02 0|0:0.224:0.776,0.223,0.001 0|0:0:1,0,0 0|0:0.172:0.834,0.159,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 1|1:2:0,0,1 0|0:0.076:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.003,0.087,0.909 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0.064:0.938,0.059,0.002 0|0:0.074:0.927,0.071,0.002 0|0:0.076:0.925,0.074,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.001,0.155,0.845 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:1.934:0.003,0.06,0.937 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:1.936:0.003,0.058,0.939 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.279:0.741,0.239,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18869491 SNP-3.18868250. C A . PASS AR2=0.953;DR2=0.964;AF=0.404 GT:DS:GP 0|0:0.163:0.844,0.148,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.884:0.003,0.109,0.887 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.146:0.856,0.141,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|1:0.977:0.059,0.905,0.036 0|0:0.451:0.567,0.415,0.018 0|0:0.173:0.835,0.158,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0.341:0.73,0.199,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.44:0.61,0.34,0.05 1|1:2:0,0,1 1|0:0.706:0.426,0.442,0.132 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.835,0.158,0.008 0|0:0:1,0,0 0|0:0.173:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.187:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0.179:0.831,0.159,0.01 0|0:0:1,0,0 0|0:0.255:0.746,0.254,0.001 0|0:0.176:0.833,0.159,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.665:0.022,0.29,0.687 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.451:0.048,0.452,0.499 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.788:0.012,0.187,0.8 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.911:0.002,0.086,0.913 1|1:1.598:0.049,0.304,0.647 1|1:2:0,0,1 1|1:1.854:0.005,0.136,0.859 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.793:0.012,0.184,0.804 1|1:2:0,0,1 0|0:0.47:0.591,0.349,0.06 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.183:0.825,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.831,0.161,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 1|0:0.991:0.049,0.911,0.04 0|0:0:1,0,0 0|0:0.143:0.863,0.131,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.147:0.86,0.133,0.007 0|1:1:0,1,0 0|0:0.066:0.935,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.876,0.118,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.831,0.161,0.008 1|1:2:0,0,1 1|1:1.962:0,0.037,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.493:0.529,0.449,0.022 1|1:1.912:0.002,0.084,0.914 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.84,0.153,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.611:0.491,0.407,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.835,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.875,0.124,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.136:0.87,0.125,0.006 +3 18869854 SNP-3.18868613. C A . PASS AR2=0.925;DR2=0.95;AF=0.415 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.152:0.853,0.143,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.02:0.05,0.879,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.875,0.124,0.002 0|0:0:1,0,0 0|0:0.548:0.458,0.536,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.923:0.084,0.909,0.007 0|1:0.515:0.55,0.385,0.065 0|0:0.29:0.726,0.259,0.015 1|1:2:0,0,1 0|0:0.075:0.926,0.074,0.001 0|0:0.498:0.562,0.378,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.824,0.176,0 0|0:0.361:0.64,0.359,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.705:0.404,0.487,0.109 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.202:0.798,0.202,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.855,0.133,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.008,0.227,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.516:0.021,0.442,0.537 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.692:0,0.308,0.692 1|0:1.171:0.162,0.506,0.332 1|1:1.911:0.003,0.083,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.805:0.317,0.56,0.122 1|1:2:0,0,1 0|0:0.086:0.917,0.081,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.681:0.03,0.258,0.711 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.003,0.09,0.908 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.168:0.246,0.34,0.414 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.301:0.709,0.281,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.943:0.057,0.943,0 0|0:0.042:0.96,0.039,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.093:0.02,0.867,0.113 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.548:0.106,0.24,0.654 0|0:0:1,0,0 1|0:1.099:0.002,0.897,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.002:0.048,0.902,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.524:0.519,0.438,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.691:0.309,0.691,0 0|1:1:0,1,0 1|0:0.632:0.368,0.632,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.96,0.039,0.001 0|0:0:1,0,0 1|0:0.504:0.56,0.375,0.065 1|0:0.584:0.507,0.401,0.092 0|0:0.588:0.505,0.402,0.093 0|0:0:1,0,0 1|0:0.56:0.522,0.396,0.082 0|0:0:1,0,0 1|0:0.586:0.506,0.402,0.092 0|1:0.587:0.506,0.402,0.092 0|0:0.485:0.581,0.352,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.585:0.507,0.401,0.092 0|0:0:1,0,0 0|0:0.588:0.49,0.432,0.078 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18869855 SNP-3.18868614. C A . PASS AR2=0.98;DR2=0.985;AF=0.456 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.486:0.521,0.472,0.007 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.067:0.031,0.871,0.098 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.837,0.154,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.369:0.646,0.339,0.015 1|0:1:0,1,0 0|0:0.43:0.651,0.267,0.081 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.946,0.053,0.001 0|0:0.188:0.822,0.169,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.231:0.774,0.22,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:0.711:0.416,0.457,0.127 0|0:0.715:0.413,0.459,0.128 0|0:0:1,0,0 0|0:0.711:0.416,0.458,0.127 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.17:0.843,0.144,0.013 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18870770 SNP-3.18869529. C A . PASS AR2=0.997;DR2=0.997;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0,0.144,0.855 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.005,0.118,0.877 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.007,0.147,0.846 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.913:0.002,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.839:0.008,0.145,0.847 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18870916 SNP-3.18869675. C A . PASS AR2=0.992;DR2=0.994;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.821:0.002,0.176,0.823 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.731:0.019,0.231,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.635:0.038,0.29,0.672 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.368:0.632,0.368,0 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.795:0.011,0.182,0.807 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.79:0.013,0.183,0.804 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18870952 SNP-3.18869711. C A . PASS AR2=0.97;DR2=0.977;AF=0.404 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.391:0.617,0.375,0.008 1|0:1.46:0.022,0.497,0.482 0|0:0:1,0,0 0|0:0.625:0.421,0.533,0.046 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.298:0.725,0.252,0.023 0|0:0:1,0,0 0|0:0.479:0.579,0.362,0.059 0|0:0.112:0.888,0.111,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.608,0.384,0.009 0|0:0.1:0.906,0.088,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.867,0.127,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.812,0.18,0.008 0|0:0:1,0,0 0|0:0.139:0.864,0.132,0.004 0|0:0.128:0.878,0.117,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.771,0.217,0.011 0|0:0.277:0.753,0.218,0.03 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.632:0.038,0.292,0.67 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.002,0.084,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.081:0.921,0.077,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.128:0.878,0.117,0.005 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:0.707:0.393,0.506,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.09,0.004 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.098:0.905,0.092,0.003 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.404:0.637,0.321,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0.096:0.907,0.091,0.003 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.067,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.966,0.033,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.935,0.063,0.002 +3 18871142 SNP-3.18869901. C A . PASS AR2=0.997;DR2=0.998;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.066:0.935,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.728:0,0.272,0.728 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.104:0.898,0.1,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18872231 SNP-3.18870990at. A G . PASS AR2=0.992;DR2=0.992;AF=0.519 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.893:0.003,0.102,0.896 1|1:1.957:0,0.042,0.958 1|1:1.896:0.004,0.097,0.899 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.003,0.096,0.901 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:1.813:0.003,0.18,0.817 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.876,0.124,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.859,0.139,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.13:0.87,0.129,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.933:0.002,0.063,0.935 1|1:1.927:0.003,0.067,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.002,0.063,0.936 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.005,0.105,0.89 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.904:0.002,0.092,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.914:0.002,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18872231 SNP-3.18870990ac. C A . PASS AR2=0.998;DR2=0.999;AF=0.464 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.425:0.576,0.423,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18875926 SNP-3.18874685. C A . PASS AR2=0.992;DR2=0.994;AF=0.309 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.572:0.048,0.332,0.62 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.943:0.155,0.747,0.098 1|1:1.899:0.001,0.099,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.545:0.064,0.328,0.609 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.957:0.001,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18875999 SNP-3.18874758. A G . PASS AR2=1;DR2=1;AF=0.243 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18880737 SNP-3.18879496. A G . PASS AR2=1;DR2=1;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18882188 SNP-3.18880947. C A . PASS AR2=0.928;DR2=0.947;AF=0.376 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.291:0.736,0.237,0.027 1|1:2:0,0,1 0|0:0.23:0.776,0.218,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.77:0.013,0.203,0.783 1|1:1.949:0.001,0.049,0.95 1|1:1.611:0.038,0.313,0.649 0|0:0.318:0.709,0.264,0.027 0|0:0.23:0.785,0.2,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.323:0.699,0.278,0.023 1|1:2:0,0,1 0|0:0.383:0.658,0.301,0.041 0|0:0.047:0.954,0.046,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.412:0.635,0.319,0.046 1|1:2:0,0,1 0|0:0.16:0.847,0.145,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.693,0.274,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.86,0.139,0.001 0|0:0.332:0.696,0.275,0.029 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.422:0.629,0.319,0.052 0|0:0.215:0.789,0.206,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.002,0.09,0.908 1|1:2:0,0,1 1|1:1.521:0.06,0.359,0.581 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.526:0.057,0.36,0.583 1|1:2:0,0,1 1|1:1.619:0.033,0.315,0.652 1|0:1.546:0.051,0.353,0.596 1|1:2:0,0,1 1|1:1.58:0.042,0.336,0.622 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0.001,0.029,0.97 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.78:0.012,0.196,0.792 0|0:0:1,0,0 1|1:1.911:0.002,0.086,0.913 1|1:1.609:0.035,0.321,0.644 1|1:1.637:0.03,0.304,0.667 1|1:2:0,0,1 1|1:1.895:0.002,0.1,0.897 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.979:0.001,0.02,0.979 1|1:1.603:0.042,0.314,0.645 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.338:0.687,0.288,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.079,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.653,0.311,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.053,0.945 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.632,0.323,0.046 0|0:0.446:0.614,0.327,0.059 1|1:1.5:0.067,0.366,0.567 0|0:0.342:0.688,0.283,0.029 0|0:0.227:0.773,0.227,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.289:0.731,0.249,0.02 0|0:0:1,0,0 0|0:0.346:0.692,0.271,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.36:0.664,0.312,0.024 1|1:2:0,0,1 0|0:0.384:0.656,0.304,0.04 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.657,0.304,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.298:0.731,0.24,0.029 1|1:2:0,0,1 0|0:0.336:0.693,0.278,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.399:0.643,0.314,0.042 1|1:1.522:0.062,0.353,0.584 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18883386 SNP-3.18882145. C A . PASS AR2=0.996;DR2=0.997;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.704,0.29,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.003,0.101,0.896 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.925:0.001,0.072,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.39:0.61,0.39,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18884077 SNP-3.18882836. C A . PASS AR2=0.995;DR2=0.997;AF=0.445 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.002,0.052,0.946 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.358:0.035,0.572,0.393 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.635:0.013,0.34,0.647 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.952:0,0.047,0.952 1|1:2:0,0,1 1|1:1.846:0.013,0.128,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18884772 SNP-3.18883531. C A . PASS AR2=0.996;DR2=0.997;AF=0.375 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.139:0.867,0.127,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.425:0.586,0.404,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18887307 SNP-3.18886066. A G . 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C A . PASS AR2=0.999;DR2=0.999;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.897:0.173,0.758,0.069 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18891889 SNP-3.18890648. C A . PASS AR2=0.992;DR2=0.993;AF=0.427 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.846:0.006,0.142,0.852 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.906:0.101,0.892,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.823:0.007,0.162,0.831 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.904:0.103,0.89,0.007 1|1:1.664:0.044,0.247,0.709 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.897:0.004,0.096,0.9 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.011,0.156,0.832 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.798:0.01,0.181,0.808 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.004,0.13,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.746:0.017,0.22,0.763 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18893246 SNP-3.18892005. C A . PASS AR2=1;DR2=1;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18901067 SNP-3.18899826. C A . PASS AR2=0.998;DR2=0.999;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.41:0.591,0.408,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18901541 SNP-3.18900300. C A . PASS AR2=0.969;DR2=0.978;AF=0.293 GT:DS:GP 0|0:0.033:0.967,0.032,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.88:0.204,0.713,0.084 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.716:0.016,0.252,0.732 1|1:1.927:0.001,0.07,0.929 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.207:0.803,0.188,0.01 0|0:0:1,0,0 0|1:0.506:0.534,0.427,0.04 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|0:0.53:0.491,0.487,0.021 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0.069:0.931,0.069,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.079:0.002,0.917,0.081 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.939,0.06,0.001 1|1:1.932:0.001,0.067,0.932 0|0:0.151:0.856,0.137,0.007 0|0:0.259:0.752,0.237,0.011 0|1:0.762:0.32,0.598,0.082 1|1:1.92:0.001,0.077,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.762,0.229,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0,0.064,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.168:0.246,0.34,0.414 0|0:0.043:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.213:0.797,0.192,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.769,0.217,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.843:0.242,0.674,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.003,0.044,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0.001,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18901857 SNP-3.18900616. C A . PASS AR2=0.966;DR2=0.97;AF=0.308 GT:DS:GP 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.963:0.001,0.036,0.964 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.073:0.215,0.496,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.106:0.201,0.492,0.307 1|0:1.08:0.213,0.495,0.293 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.068:0.218,0.496,0.286 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.247:0.133,0.486,0.381 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.217:0.783,0.217,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.096:0.205,0.494,0.301 0|1:1.323:0.099,0.48,0.422 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 1|0:1.119:0.192,0.496,0.311 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|0:1.388:0.023,0.565,0.411 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.395:0.069,0.467,0.464 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 0|0:0.289:0.775,0.161,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.099:0.204,0.493,0.303 1|1:1.192:0.181,0.445,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18902596 SNP-3.18901355. A G . 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C A . 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C A . PASS AR2=0.966;DR2=0.972;AF=0.291 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.007,0.146,0.848 0|0:0.868:0.322,0.489,0.189 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.803:0.362,0.473,0.165 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0,0.051,0.949 1|1:2:0,0,1 1|1:1.749:0.015,0.22,0.764 1|1:2:0,0,1 0|0:0.971:0.267,0.495,0.238 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.892:0.003,0.102,0.895 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:0.969:0.27,0.49,0.239 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.139:0.177,0.507,0.316 0|0:0:1,0,0 1|1:1.868:0.004,0.123,0.873 0|0:0.134:0.866,0.134,0 1|1:2:0,0,1 1|1:1.739:0.02,0.222,0.758 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.999:0.253,0.495,0.252 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.947:0.273,0.508,0.22 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.005,0.126,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.888:0.003,0.105,0.891 1|1:2:0,0,1 1|1:1.961:0.002,0.035,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.034:0.349,0.267,0.383 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18922800 SNP-3.18921559. C A . PASS AR2=0.986;DR2=0.988;AF=0.383 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.889,0.105,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.003,0.063,0.934 1|1:2:0,0,1 1|1:1.912:0.004,0.081,0.916 1|1:1.92:0.004,0.073,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.004,0.091,0.906 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.871:0.004,0.12,0.875 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0.146:0.856,0.143,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.842,0.146,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.699:0.317,0.667,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.861,0.132,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.297:0.726,0.252,0.022 0|0:0:1,0,0 0|0:0.266:0.744,0.246,0.01 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.885,0.109,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.859,0.133,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.726,0.252,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.881:0.005,0.109,0.886 0|0:0:1,0,0 +3 18923292 SNP-3.18922051. C A . PASS AR2=0.995;DR2=0.995;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.23:0.101,0.569,0.33 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.167:0.168,0.498,0.335 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.881:0.007,0.105,0.888 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18923377 SNP-3.18922136. A G . PASS AR2=0.992;DR2=0.994;AF=0.299 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.129:0.877,0.117,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.83,0.16,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.678:0.417,0.488,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.38:0.642,0.335,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.092:0.908,0.092,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.797,0.187,0.016 1|1:2:0,0,1 +3 18923502 SNP-3.18922261. C A . PASS AR2=0.999;DR2=0.999;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.926,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18924201 SNP-3.18922960. C A . PASS AR2=0.996;DR2=0.996;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:1.919:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.064:0.936,0.064,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.907:0.001,0.09,0.909 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.017,0.115,0.868 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18925620 SNP-3.18924379. A G . PASS AR2=0.926;DR2=0.943;AF=0.426 GT:DS:GP 1|0:1.341:0.096,0.467,0.437 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.422:0.09,0.398,0.512 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.061:0.244,0.45,0.305 0|0:0.544:0.527,0.402,0.071 1|0:0.837:0.338,0.487,0.175 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.933:0.262,0.544,0.195 0|0:0:1,0,0 1|1:1.774:0,0.226,0.774 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 0|0:0.697:0.428,0.446,0.126 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.622:0.439,0.501,0.06 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.888:0.328,0.457,0.216 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.19:0.158,0.494,0.348 1|1:1.661:0.058,0.223,0.719 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.062:0.196,0.547,0.258 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.619:0.018,0.344,0.638 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.296:0.121,0.462,0.417 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.263:0.739,0.259,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.476:0.599,0.325,0.075 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.611:0.481,0.428,0.091 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.857:0.328,0.487,0.185 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.17:0,0.83,0.17 0|0:0:1,0,0 0|1:1.315:0.112,0.461,0.427 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.935 0|0:0.534:0.525,0.415,0.06 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.463:0.596,0.345,0.059 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.288:0.148,0.417,0.435 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.315:0.123,0.44,0.438 1|1:2:0,0,1 1|0:1.146:0.154,0.545,0.3 0|1:1.143:0.031,0.794,0.175 1|1:1.824:0,0.176,0.824 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.62:0.029,0.323,0.649 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.307:0.102,0.488,0.409 0|1:1.448:0.076,0.4,0.524 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.825:0.361,0.453,0.186 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.042:0.239,0.48,0.281 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.475:0.071,0.384,0.546 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 18926620 SNP-3.18925379. C A . PASS AR2=0.994;DR2=0.995;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.002,0.104,0.895 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.007,0.145,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.826:0.008,0.158,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.006,0.142,0.852 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.83:0.008,0.154,0.838 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.001,0.093,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.005,0.078,0.917 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.011,0.116,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18929154 SNP-3.18927913. A G . PASS AR2=0.998;DR2=0.998;AF=0.245 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.736:0.001,0.262,0.737 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18929968 SNP-3.18928727. C A . PASS AR2=0.963;DR2=0.972;AF=0.454 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.004:0.246,0.503,0.25 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.495:0.045,0.415,0.54 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.486:0.574,0.366,0.06 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.047:0.227,0.5,0.274 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.372:0.095,0.438,0.467 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.919:0,0.08,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.78:0.012,0.196,0.792 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.002,0.055,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.704,0.217,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.198:0.173,0.456,0.371 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.764:0.383,0.47,0.147 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.57:0.512,0.406,0.082 1|0:0.95:0.277,0.497,0.227 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.951:0.276,0.497,0.227 0|0:0.568:0.514,0.405,0.082 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.009,0.17,0.821 0|0:0:1,0,0 +3 18930411 SNP-3.18929170. C A . PASS AR2=1;DR2=1;AF=0.471 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18930486 SNP-3.18929245. C A . PASS AR2=0.968;DR2=0.977;AF=0.48 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.397:0.668,0.266,0.065 0|0:0.195:0.82,0.165,0.015 0|0:0.334:0.7,0.266,0.034 1|1:2:0,0,1 0|0:0.35:0.691,0.267,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.394:0.65,0.305,0.044 0|0:0:1,0,0 1|1:1.934:0,0.066,0.934 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.655,0.3,0.045 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.431:0.623,0.324,0.054 0|0:0.433:0.621,0.325,0.054 0|0:0.41:0.642,0.307,0.051 0|0:0:1,0,0 0|0:0.433:0.621,0.325,0.054 0|0:0:1,0,0 0|0:0.369:0.673,0.286,0.041 0|0:0.433:0.621,0.325,0.054 0|0:0.317:0.718,0.246,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.433:0.621,0.325,0.054 0|0:0:1,0,0 0|0:0.426:0.626,0.321,0.052 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.433:0.621,0.325,0.054 1|1:2:0,0,1 0|0:0.402:0.65,0.299,0.051 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18930903 SNP-3.18929662. A G . PASS AR2=0.996;DR2=0.997;AF=0.27 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.862,0.135,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.786:0.362,0.489,0.149 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18932532 SNP-3.18931291. A G . PASS AR2=0.996;DR2=0.996;AF=0.229 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.004,0.077,0.919 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.015,0.226,0.759 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.003,0.081,0.917 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.003,0.067,0.93 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18934236 SNP-3.18932995. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18937085 SNP-3.18935844. A G . PASS AR2=0.921;DR2=0.936;AF=0.219 GT:DS:GP 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.159:0.176,0.488,0.336 0|0:0:1,0,0 1|1:1.278:0.116,0.491,0.394 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:1.993:0,0.006,0.994 1|1:1.729:0.024,0.223,0.753 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.573:0.041,0.344,0.614 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.841,0.157,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.997:0.236,0.53,0.233 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.711:0.01,0.269,0.721 0|1:1.16:0.177,0.487,0.336 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.027:0.229,0.514,0.256 1|1:1.456:0.068,0.409,0.523 0|0:0:1,0,0 1|0:0.426:0.636,0.302,0.062 0|0:0.53:0.563,0.344,0.093 0|0:0.137:0.885,0.094,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.872,0.124,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.905,0.094,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.374:0.673,0.28,0.047 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.061:0.939,0.061,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.368:0.661,0.31,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.256:0.747,0.25,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.493:0.015,0.476,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.634,0.317,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.321:0.039,0.601,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.02:0.201,0.578,0.221 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0.153:0.853,0.141,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.921:0.284,0.51,0.205 0|0:0.864:0.344,0.447,0.209 0|0:0:1,0,0 0|1:0.964:0.248,0.539,0.213 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.068,0 0|0:0.414:0.635,0.317,0.048 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.097,0.001 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.357:0.029,0.585,0.386 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.765,0.2,0.035 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.862,0.131,0.007 +3 18937985 SNP-3.18936744. A G . PASS AR2=0.958;DR2=0.968;AF=0.253 GT:DS:GP 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.124:0.877,0.122,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 0|0:0:1,0,0 1|0:0.97:0.314,0.402,0.284 1|1:1.91:0.005,0.081,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0.027:0.973,0.027,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.38:0.659,0.301,0.039 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.467:0.078,0.377,0.545 0|0:0.125:0.876,0.122,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.469:0.073,0.385,0.542 0|1:1.425:0.086,0.404,0.51 1|1:1.472:0.076,0.376,0.548 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.839,0.16,0.001 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.459:0.08,0.381,0.539 1|1:1.323:0.093,0.491,0.416 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.276:0.139,0.447,0.414 0|0:0.098:0.902,0.098,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.078:0.922,0.077,0 0|0:0.078:0.922,0.078,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0,0.057,0.942 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.975:0.283,0.458,0.259 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.006,0.088,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.824,0.168,0.008 0|0:0:1,0,0 +3 18939087 SNP-3.18937846. C A . PASS AR2=0.951;DR2=0.964;AF=0.295 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.776:0.013,0.199,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.579:0.025,0.371,0.604 1|1:1.836:0.009,0.147,0.844 1|1:1.963:0.001,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.813:0.009,0.17,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.685:0.023,0.268,0.709 0|0:0.281:0.744,0.231,0.025 1|1:1.738:0.011,0.241,0.748 1|0:0.626:0.452,0.471,0.077 0|0:0.249:0.772,0.207,0.021 0|0:0.595:0.485,0.435,0.08 0|0:0.313:0.715,0.257,0.028 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.01,0.166,0.824 1|1:1.613:0.016,0.355,0.629 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.998,0.002,0 1|1:2:0,0,1 1|1:1.711:0.014,0.261,0.725 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.789:0.011,0.189,0.8 0|0:0.257:0.765,0.214,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.494:0.572,0.362,0.066 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.634:0.031,0.305,0.665 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.683:0.025,0.267,0.708 1|1:1.62:0.037,0.306,0.657 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.003,0.083,0.913 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.012,0.193,0.794 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.68:0.457,0.405,0.138 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.724:0.008,0.261,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.897:0.002,0.098,0.9 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.78:0.012,0.195,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.775:0.013,0.199,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.654:0.036,0.275,0.69 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.048,0.282,0.67 0|0:0:1,0,0 +3 18939114 SNP-3.18937873. C A . PASS AR2=0.973;DR2=0.978;AF=0.277 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.457:0.12,0.303,0.577 1|1:2:0,0,1 1|1:1.118:0.19,0.503,0.308 1|1:2:0,0,1 0|1:1.394:0.057,0.492,0.451 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.853:0.006,0.135,0.859 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.608:0.013,0.365,0.621 0|0:0.266:0.738,0.258,0.004 0|0:0:1,0,0 0|0:0.19:0.814,0.182,0.004 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.791:0.272,0.665,0.063 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.687:0.348,0.617,0.035 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.022,0.178,0.801 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.007,0.165,0.829 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.006,0.072,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.108:0.219,0.455,0.327 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.556:0.066,0.313,0.621 0|0:0:1,0,0 +3 18948677 SNP-3.18947436. C A . PASS AR2=0.987;DR2=0.989;AF=0.371 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0.123:0.879,0.118,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:1.962:0.001,0.037,0.963 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0.333:0.677,0.313,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.195:0.811,0.184,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.162:0.845,0.148,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.001,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.068,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.827,0.164,0.009 0|0:0.144:0.86,0.136,0.004 1|1:1.941:0.001,0.058,0.942 0|0:0.138:0.865,0.132,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.801,0.191,0.008 1|1:1.945:0.001,0.054,0.946 0|0:0.161:0.845,0.148,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.004,0.106,0.89 0|0:0:1,0,0 +3 18948838 SNP-3.18947597. C A . PASS AR2=0.922;DR2=0.945;AF=0.499 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.374:0.652,0.321,0.026 1|1:2:0,0,1 0|1:0.575:0.506,0.413,0.081 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.782,0.207,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.446:0.594,0.366,0.04 0|0:0:1,0,0 0|1:0.635:0.448,0.469,0.083 0|0:0.031:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0.618:0.478,0.426,0.096 0|0:0.087:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.194:0.25,0.306,0.444 0|0:0.434:0.636,0.293,0.071 0|0:0.328:0.707,0.258,0.035 0|0:0:1,0,0 0|0:0.293:0.728,0.252,0.02 0|0:0.328:0.701,0.27,0.029 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.391:0.649,0.312,0.04 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.205:0.135,0.524,0.341 0|0:0:1,0,0 0|0:0.357:0.655,0.333,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.331:0.697,0.275,0.028 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|1:0.694:0.394,0.517,0.089 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.405:0.635,0.325,0.04 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.193:0.82,0.167,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.236:0.782,0.201,0.018 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.998:0,0.002,0.998 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.36:0.672,0.296,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.82,0.174,0.006 0|0:0.568:0.51,0.411,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.763,0.218,0.019 1|1:2:0,0,1 0|0:0.309:0.713,0.265,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.877,0.122,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.719:0.5,0.28,0.22 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.239:0.779,0.203,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.34:0.687,0.287,0.027 0|0:0.313:0.712,0.262,0.025 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.612:0.464,0.461,0.075 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.792,0.195,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.426:0.099,0.375,0.526 1|1:2:0,0,1 0|1:0.677:0.418,0.487,0.095 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.415:0.633,0.32,0.047 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.354:0.106,0.434,0.46 1|1:1.264:0.141,0.454,0.405 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.491:0.11,0.289,0.601 0|0:0:1,0,0 1|1:1.612:0.068,0.252,0.68 0|0:0.734:0.406,0.454,0.14 1|1:2:0,0,1 0|0:0:1,0,0 +3 18950066 SNP-3.18948825. C A . PASS AR2=0.971;DR2=0.975;AF=0.494 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 0|0:0.174:0.834,0.159,0.008 1|1:2:0,0,1 0|0:0.243:0.768,0.221,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.141:0.864,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.218:0.79,0.202,0.008 0|0:0:1,0,0 0|0:0.334:0.692,0.283,0.026 0|0:0.2:0.81,0.18,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.873,0.125,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.03:0.234,0.502,0.264 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.969 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.297:0.125,0.453,0.422 1|0:1.255:0.141,0.464,0.396 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.245:0.143,0.469,0.388 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.242:0.147,0.465,0.388 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.191:0.816,0.177,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.079,0.002 0|0:0.529:0.548,0.374,0.078 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.082:0.921,0.076,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.255:0.141,0.464,0.396 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.813,0.182,0.005 0|0:0:1,0,0 1|0:1.248:0.142,0.468,0.39 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.018,0.229,0.753 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.916:0,0.084,0.916 0|0:0:1,0,0 +3 18950548 SNP-3.18949307. A G . PASS AR2=0.95;DR2=0.959;AF=0.515 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.008,0.172,0.82 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.844:0.009,0.138,0.853 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.01,0.175,0.815 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.701:0.022,0.255,0.723 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.804:0.009,0.178,0.813 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.339:0.11,0.441,0.449 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.996:0.262,0.479,0.259 1|1:1.902:0.002,0.095,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.089,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.974:0.276,0.474,0.25 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.09:0.21,0.489,0.3 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.637:0.014,0.335,0.651 0|0:0:1,0,0 1|1:1.548:0.038,0.377,0.585 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.09:0.21,0.489,0.3 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.042,0.338,0.62 0|0:0:1,0,0 1|1:1.903:0.004,0.09,0.907 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.923:0.284,0.508,0.208 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.735:0.018,0.229,0.753 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.002,0.048,0.95 0|0:0.595:0.495,0.415,0.09 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.002,0.073,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.791:0.017,0.174,0.808 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.091:0.21,0.489,0.301 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.881:0.005,0.109,0.886 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.817:0.008,0.166,0.825 0|0:0:1,0,0 1|1:1.595:0.037,0.33,0.632 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.709:0.024,0.242,0.733 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.233:0.795,0.177,0.028 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.91:0.003,0.085,0.913 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.096:0.208,0.488,0.304 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.005,0.104,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.83:0.01,0.15,0.84 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.09:0.21,0.489,0.3 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.002,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18950913 SNP-3.18949672. C A . PASS AR2=0.97;DR2=0.979;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:1.919:0.002,0.076,0.921 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.901:0.003,0.093,0.904 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.945,0.055,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.737,0.255,0.008 0|0:0:1,0,0 0|0:0.101:0.905,0.089,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.088:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.25:0.187,0.375,0.438 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.805:0.006,0.183,0.811 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.701:0.029,0.241,0.73 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.912:0.002,0.084,0.914 0|0:0.132:0.87,0.129,0.002 1|1:1.923:0.002,0.073,0.925 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.002,0.06,0.939 0|0:0.308:0.716,0.26,0.024 0|0:0.309:0.715,0.261,0.024 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.002,0.127,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.898:0.004,0.095,0.902 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.318:0.707,0.267,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.157:0.846,0.152,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.517:0.515,0.452,0.033 1|1:1.942:0.002,0.054,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.447:0.599,0.356,0.046 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.186:0.254,0.307,0.44 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 18964247 SNP-3.18963006. C A . 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A G . PASS AR2=0.94;DR2=0.953;AF=0.375 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.003,0.121,0.875 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|1:1.103:0.192,0.514,0.295 0|0:0:1,0,0 1|1:1.398:0.181,0.24,0.579 1|1:1.585:0.044,0.326,0.629 0|0:0:1,0,0 0|1:1.163:0.163,0.51,0.327 0|0:0.469:0.553,0.425,0.022 1|1:1.779:0.018,0.186,0.796 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.804,0.185,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.361:0.656,0.327,0.017 0|0:0.019:0.982,0.018,0 0|1:0.566:0.467,0.5,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.798,0.191,0.011 0|0:0:1,0,0 0|0:0.45:0.611,0.329,0.06 0|0:0.146:0.86,0.134,0.006 0|0:0:1,0,0 1|0:0.487:0.553,0.407,0.04 1|1:2:0,0,1 1|1:1.845:0.004,0.146,0.849 0|1:0.72:0.35,0.581,0.069 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.979:0.277,0.467,0.256 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.469:0.553,0.426,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|1:0.744:0.377,0.502,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.1:0.246,0.408,0.346 0|0:0:1,0,0 0|0:0.336:0.693,0.278,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.191:0.1,0.61,0.29 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.157:0.847,0.15,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.885:0.262,0.591,0.147 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.446:0.599,0.356,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.842:0.006,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.007,0.151,0.842 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 0|0:0.436:0.617,0.329,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.532:0.52,0.427,0.053 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.118:0.886,0.109,0.005 1|1:2:0,0,1 0|0:0.808:0.389,0.414,0.197 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.827:0.008,0.158,0.835 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.898,0.097,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.819,0.168,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.753,0.191,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.996,0.004,0 0|0:0:1,0,0 1|1:1.829:0.012,0.147,0.841 +3 18967396 SNP-3.18966155. A G . PASS AR2=0.994;DR2=0.994;AF=0.258 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.772:0.396,0.435,0.169 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.87,0.13,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.839:0.302,0.557,0.141 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 18967417 SNP-3.18966176. A G . PASS AR2=0.977;DR2=0.983;AF=0.499 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.666:0.009,0.315,0.676 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.608:0.005,0.383,0.613 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.615:0.008,0.369,0.623 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:1.826:0.005,0.164,0.831 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.038,0.962 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.836:0.335,0.495,0.17 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.753,0.228,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.91,0.079,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.067:0.063,0.807,0.13 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.256:0.761,0.221,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.757,0.224,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.006,0.181,0.813 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.487:0.047,0.42,0.533 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.172:0.835,0.157,0.008 1|0:1.592:0.008,0.392,0.6 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.533:0.057,0.352,0.591 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.002,0.126,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 1|1:1.949:0.001,0.048,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 18968191 SNP-3.18966950. C A . PASS AR2=0.994;DR2=0.995;AF=0.342 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.798,0.202,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.884,0.111,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.508:0.062,0.368,0.57 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.088:0.913,0.087,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.111,0.005 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 18986724 SNP-3.18985483. C A . PASS AR2=0.899;DR2=0.93;AF=0.265 GT:DS:GP 0|0:0:1,0,0 1|1:1.802:0.012,0.174,0.814 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.31:0.131,0.428,0.441 1|1:1.806:0.011,0.171,0.817 1|1:1.816:0.011,0.161,0.828 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.758:0.015,0.211,0.774 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.531:0.554,0.361,0.085 1|1:2:0,0,1 0|1:1.173:0.216,0.396,0.388 1|1:1.399:0.083,0.435,0.482 0|0:0.627:0.487,0.398,0.115 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.462:0.076,0.386,0.538 1|1:1.514:0.06,0.365,0.575 1|1:1.543:0.054,0.349,0.597 1|1:1.616:0.038,0.308,0.654 1|1:1.537:0.055,0.352,0.592 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.957:0.317,0.409,0.274 1|1:2:0,0,1 1|0:0.944:0.228,0.599,0.172 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.668:0.028,0.276,0.696 0|0:0:1,0,0 1|1:1.791:0.013,0.182,0.805 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.246:0.063,0.627,0.309 0|0:0:1,0,0 0|1:0.897:0.374,0.356,0.271 1|1:1.542:0.054,0.349,0.596 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.565:0.048,0.338,0.614 1|1:1.711:0.023,0.242,0.735 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.527:0.036,0.402,0.562 1|1:1.737:0.025,0.212,0.763 1|0:1.138:0.227,0.409,0.365 0|0:0.889:0.418,0.275,0.307 1|1:2:0,0,1 1|1:1.535:0.056,0.352,0.592 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.65:0.04,0.27,0.69 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.64:0.042,0.275,0.683 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.538:0.042,0.377,0.58 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.624:0.482,0.413,0.106 0|0:0:1,0,0 1|0:0.765:0.376,0.483,0.141 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.424:0.673,0.23,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.504:0.574,0.348,0.078 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18987135 SNP-3.18985894. C A . PASS AR2=0.976;DR2=0.982;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:1.87:0,0.13,0.87 1|0:0.663:0.44,0.458,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.044,0 1|1:1.861:0.001,0.137,0.862 0|0:0.523:0.569,0.339,0.092 0|0:0:1,0,0 0|0:0.46:0.569,0.401,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.444:0.041,0.473,0.486 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.935:0.248,0.569,0.183 1|1:1.912:0.002,0.084,0.914 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0,0.076,0.924 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.479:0.015,0.492,0.494 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.147:0.171,0.51,0.319 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.957,0.043,0 1|1:1.622:0.055,0.268,0.677 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.695:0.027,0.252,0.721 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.009,0.12,0.871 0|0:0:1,0,0 1|1:1.889:0.009,0.092,0.898 1|1:2:0,0,1 1|1:1.869:0.003,0.125,0.872 0|0:0:1,0,0 +3 18988598 SNP-3.18987357. C A . PASS AR2=0.997;DR2=0.997;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.714:0.021,0.244,0.735 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.691:0.019,0.272,0.709 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18988892 SNP-3.18987651. C A . PASS AR2=0.958;DR2=0.966;AF=0.309 GT:DS:GP 0|0:0:1,0,0 1|1:1.814:0.009,0.168,0.823 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.007,0.155,0.838 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.714:0.019,0.249,0.732 1|1:1.842:0.006,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.614:0.04,0.306,0.654 1|1:2:0,0,1 1|1:1.677:0.034,0.255,0.711 1|1:1.675:0.034,0.256,0.71 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.007,0.109,0.885 1|1:1.493:0.074,0.359,0.567 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.834:0.007,0.151,0.842 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.882:0.005,0.108,0.887 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.75:0.021,0.208,0.771 0|0:0:1,0,0 1|1:1.753:0.021,0.206,0.773 1|1:1.562:0.045,0.348,0.607 1|1:2:0,0,1 1|1:1.837:0.007,0.15,0.843 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.633:0.038,0.291,0.671 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.004,0.095,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.495:0.063,0.38,0.558 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|1:1.171:0.149,0.532,0.319 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0.008,0.126,0.867 1|1:1.849:0.007,0.136,0.856 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.542:0.059,0.34,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.004,0.09,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.675:0.028,0.27,0.703 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.691:0.026,0.258,0.716 0|0:0:1,0,0 1|1:1.789:0.012,0.186,0.801 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.873:0.006,0.116,0.879 0|0:0:1,0,0 1|1:1.005:0.279,0.438,0.283 1|1:1.939:0.003,0.056,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.591:0.075,0.26,0.665 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18988967 SNP-3.18987726. C A . PASS AR2=0.982;DR2=0.985;AF=0.406 GT:DS:GP 0|0:0.108:0.894,0.103,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0.111:0.895,0.098,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.057:0.945,0.053,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.862,0.133,0.005 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 1|1:1.571:0.024,0.382,0.595 0|0:0:1,0,0 0|0:0.12:0.883,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.896,0.102,0.002 0|0:0:1,0,0 0|0:0.137:0.864,0.135,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.174:0.833,0.161,0.007 0|0:0.098:0.903,0.097,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.193:0.819,0.169,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.819,0.169,0.012 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.721:0.035,0.209,0.756 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.818,0.17,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.819,0.169,0.012 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0.193:0.819,0.169,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.703,0.284,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.961,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.207:0.803,0.187,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.877,0.117,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0.031:0.969,0.03,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.09:0.914,0.081,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 1|1:2:0,0,1 0|0:0:1,0,0 +3 18988984 SNP-3.18987743. C A . PASS AR2=0.972;DR2=0.979;AF=0.417 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.136:0.871,0.122,0.007 0|0:0.045:0.956,0.043,0.001 1|0:1:0,1,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0.096:0.906,0.092,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.679:0.447,0.426,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.883:0.216,0.685,0.099 0|0:0.101:0.904,0.092,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.876,0.121,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.63:0.475,0.421,0.104 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.052:0.226,0.496,0.278 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.844:0.321,0.513,0.165 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.051:0.95,0.049,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.052:0.226,0.496,0.278 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.663:0.479,0.379,0.142 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.644:0.447,0.461,0.091 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.048,0.001 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.045:0.956,0.043,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18989003 SNP-3.18987762. C A . PASS AR2=0.974;DR2=0.982;AF=0.427 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.261:0.74,0.258,0.001 0|0:0.057:0.945,0.054,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.049:0.952,0.048,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.649:0.382,0.586,0.031 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.522:0.483,0.512,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.03:0.971,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.18:0.832,0.156,0.012 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.878:0,0.121,0.879 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.063:0.938,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.296:0.724,0.255,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.003,0.094,0.904 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 1|1:1.928:0.001,0.07,0.929 1|1:1.891:0.003,0.102,0.894 1|1:1.891:0.003,0.103,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.224:0.778,0.221,0.002 0|0:0.022:0.979,0.021,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0,0.088,0.912 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0.001 1|1:2:0,0,1 0|0:0.471:0.532,0.465,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 1|0:1.276:0.108,0.508,0.384 0|0:0.078:0.923,0.076,0.001 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.173:0.226,0.375,0.399 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.852,0.132,0.015 0|0:0.046:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.143:0.87,0.116,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.093,0.003 1|1:2:0,0,1 0|0:0:1,0,0 +3 18989771 SNP-3.18988530. C A . PASS AR2=0.978;DR2=0.984;AF=0.402 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.195:0.814,0.176,0.01 0|0:0:1,0,0 0|0:0.202:0.808,0.182,0.01 0|0:0.18:0.829,0.162,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.455:0.082,0.382,0.537 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.007:0.045,0.904,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.053,0.001 1|1:2:0,0,1 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.775,0.208,0.017 0|0:0:1,0,0 0|0:0.269:0.737,0.257,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.189:0.821,0.168,0.011 1|1:2:0,0,1 0|0:0.648:0.367,0.619,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.433:0.665,0.237,0.098 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.562:0.442,0.553,0.005 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.069:0.934,0.064,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.77,0.216,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.766,0.218,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.172:0.836,0.156,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.778,0.207,0.015 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18990208 SNP-3.18988967. C A . PASS AR2=0.984;DR2=0.989;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.001,0.073,0.926 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.715:0.488,0.31,0.202 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.013,0.135,0.852 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.861:0.005,0.13,0.866 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.778:0.016,0.191,0.794 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.876:0.004,0.116,0.88 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.002,0.048,0.951 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.693:0.027,0.252,0.72 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.087,0.911 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.916:0.003,0.079,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.492:0.052,0.405,0.543 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.72:0.005,0.271,0.724 0|0:0:1,0,0 +3 18990589 SNP-3.18989348. C A . PASS AR2=0.979;DR2=0.984;AF=0.424 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.329:0.671,0.329,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.868:0.134,0.864,0.002 1|1:1.948:0,0.051,0.949 1|0:1.032:0.26,0.448,0.292 0|0:0.288:0.713,0.286,0.001 0|0:0.671:0.378,0.573,0.049 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.982:0,0.017,0.982 0|0:0.459:0.674,0.193,0.133 1|1:1.633:0.017,0.333,0.65 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.019:0.195,0.591,0.214 1|1:1.947:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.375:0.68,0.266,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.503:0.085,0.327,0.588 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.734:0.002,0.261,0.737 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.937:0,0.063,0.937 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.863,0.137,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18991158 SNP-3.18989917. C A . PASS AR2=0.994;DR2=0.995;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.931,0.062,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.879,0.118,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.86,0.137,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.84,0.152,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.526:0.003,0.467,0.53 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.906,0.093,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.072,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18993950 SNP-3.18992709. C A . PASS AR2=0.994;DR2=0.995;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.07:0.931,0.067,0.002 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.917,0.083,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.672:0.002,0.324,0.674 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 18994468 SNP-3.18993227. C A . 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C A . PASS AR2=0.941;DR2=0.954;AF=0.288 GT:DS:GP 0|0:0:1,0,0 1|1:1.156:0.186,0.472,0.342 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.24:0.773,0.215,0.013 0|0:0:1,0,0 0|0:0.219:0.806,0.169,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.266:0.142,0.451,0.407 0|0:0:1,0,0 0|0:0.225:0.788,0.2,0.013 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.365:0.103,0.429,0.468 0|0:0.243:0.773,0.211,0.016 0|0:0:1,0,0 0|1:1.247:0.146,0.461,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.799,0.191,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.16,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.958,0.04,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.867,0.123,0.01 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.181:0.826,0.168,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.213:0.167,0.452,0.381 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.314:0.065,0.556,0.379 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.354:0.109,0.427,0.464 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.225:0.149,0.477,0.374 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.397:0.09,0.423,0.487 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.572:0.018,0.392,0.59 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.692,0.284,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.361:0.68,0.279,0.041 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.953:0.198,0.651,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.184:0.174,0.469,0.357 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.584:0.057,0.302,0.641 1|1:1.739:0.029,0.202,0.769 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.676:0.033,0.258,0.709 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.229:0.785,0.202,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.006,0.081,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.004,0.078,0.918 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.14:0.199,0.462,0.339 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 +3 19011011 SNP-3.19009770. C A . PASS AR2=0.962;DR2=0.97;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:1.818:0.009,0.165,0.827 0|1:1:0,1,0 1|1:1.826:0.006,0.161,0.833 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.006,0.136,0.858 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.751:0.381,0.487,0.132 0|0:0.142:0.863,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.881:0.004,0.11,0.886 1|1:2:0,0,1 0|0:0.329:0.716,0.24,0.044 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.366:0.643,0.347,0.009 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.225:0.784,0.207,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.85:0.008,0.134,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.608:0.449,0.493,0.058 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.786:0.013,0.188,0.799 1|1:1.722:0.021,0.235,0.743 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.264:0.747,0.242,0.011 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.592:0.045,0.318,0.637 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.812:0.355,0.478,0.167 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.885,0.111,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.825:0.346,0.483,0.171 1|1:1.864:0.005,0.127,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.003,0.046,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.835:0.346,0.473,0.181 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.026,0.2,0.774 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.006,0.134,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.61:0.508,0.373,0.118 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 +3 19015538 SNP-3.19014297. A G . PASS AR2=0.993;DR2=0.994;AF=0.199 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.102:0.146,0.605,0.249 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.365:0.637,0.361,0.002 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.722:0.003,0.271,0.726 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19016872 SNP-3.19015631. C A . PASS AR2=0.943;DR2=0.956;AF=0.299 GT:DS:GP 0|0:0:1,0,0 1|1:1.426:0.083,0.408,0.509 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.004,0.217,0.78 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.495:0.066,0.373,0.561 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.847,0.153,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.593:0.043,0.321,0.636 1|1:2:0,0,1 1|1:1.945:0.002,0.052,0.947 0|0:0:1,0,0 0|1:0.962:0.272,0.494,0.234 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 1|1:1.753:0.015,0.216,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.003,0.064,0.933 1|1:1.534:0.048,0.37,0.582 0|0:0:1,0,0 1|1:1.773:0.013,0.201,0.786 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.006,0.09,0.904 0|0:0:1,0,0 0|1:1.236:0.168,0.427,0.404 0|0:0:1,0,0 1|1:1.294:0.111,0.484,0.405 1|1:1.53:0.063,0.345,0.593 0|0:0:1,0,0 1|1:1.696:0.016,0.272,0.712 1|1:1.786:0.011,0.192,0.797 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.017,0.111,0.872 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.798:0.01,0.181,0.808 1|1:1.401:0.065,0.47,0.465 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.79:0.013,0.184,0.803 1|1:1.7:0.012,0.277,0.712 1|1:2:0,0,1 1|1:1.799:0.009,0.183,0.808 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.014,0.192,0.794 1|1:2:0,0,1 1|0:0.929:0.292,0.487,0.221 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.005,0.067,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.557:0.024,0.396,0.58 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.423:0.085,0.407,0.508 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0.001,0.022,0.977 1|1:1.746:0.016,0.222,0.762 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.826:0.01,0.154,0.836 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.799:0.018,0.165,0.817 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.484:0.107,0.302,0.591 1|1:2:0,0,1 1|0:1.403:0.092,0.413,0.495 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19017621 SNP-3.19016380. C A . PASS AR2=0.987;DR2=0.991;AF=0.365 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.447:0.602,0.348,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.448:0.602,0.349,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.786:0.01,0.195,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.671:0.028,0.273,0.699 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.231:0.772,0.226,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.334:0.683,0.3,0.017 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.462:0.593,0.353,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19018686 SNP-3.19017445. A G . PASS AR2=0.964;DR2=0.969;AF=0.327 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.743:0.373,0.511,0.116 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.971:0.263,0.502,0.234 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.031,0.968 0|0:0.384:0.654,0.309,0.037 0|0:0:1,0,0 0|0:0.298:0.725,0.252,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.88,0.116,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.928:0.276,0.519,0.205 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.334:0.088,0.49,0.422 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.941,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.361:0.668,0.303,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.169:0.837,0.157,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.867,0.132,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.902:0.292,0.513,0.194 0|1:1:0,1,0 1|1:1.903:0,0.096,0.903 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.185:0.823,0.169,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.051:0.233,0.484,0.284 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.421:0.61,0.359,0.031 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.982:0.258,0.502,0.24 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.256:0.762,0.22,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.948:0.278,0.496,0.226 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19018989 SNP-3.19017748. C A . PASS AR2=0.978;DR2=0.983;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.89:0.005,0.1,0.895 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.002,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.932 1|1:2:0,0,1 0|1:0.882:0.303,0.513,0.185 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.787:0.004,0.206,0.79 1|1:1.91:0.005,0.081,0.915 0|0:0.471:0.577,0.376,0.047 1|1:2:0,0,1 0|0:0.618:0.43,0.523,0.048 1|0:0.689:0.403,0.505,0.092 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.904:0.185,0.727,0.088 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 1|1:1.933:0.001,0.064,0.935 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.153:0.032,0.784,0.184 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|0:1.046:0.06,0.835,0.105 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.359:0.114,0.413,0.473 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.044,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:1.816:0.002,0.18,0.818 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19019053 SNP-3.19017812. C A . PASS AR2=0.99;DR2=0.993;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.804:0.204,0.788,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.957,0.041,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.46:0.067,0.407,0.526 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|0:1.171:0.005,0.819,0.176 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.877:0.142,0.839,0.019 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|1:1.339:0,0.661,0.339 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.824:0,0.176,0.824 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.98:0.026,0.968,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|0:1.349:0.012,0.627,0.361 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19019327 SNP-3.19018086. C A . PASS AR2=0.987;DR2=0.99;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.416:0.628,0.327,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.348:0.681,0.29,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.35:0.68,0.29,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.378:0.659,0.305,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.261:0.749,0.24,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:1.99:0,0.01,0.99 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.315:0.707,0.271,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.331:0.695,0.279,0.026 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.005,0.085,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19019901 SNP-3.19018660. C A . PASS AR2=0.995;DR2=0.995;AF=0.393 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.001,0.084,0.916 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.148:0.179,0.494,0.327 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.896:0.324,0.456,0.22 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19020214 SNP-3.19018973. C A . PASS AR2=0.973;DR2=0.979;AF=0.459 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.825,0.17,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.25:0.124,0.503,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.067,0.001 0|0:0.033:0.968,0.032,0 0|0:0.111:0.891,0.107,0.002 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0.27:0.735,0.26,0.005 0|1:1.096:0.21,0.484,0.306 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.004,0.092,0.904 1|1:2:0,0,1 0|1:0.711:0.347,0.596,0.057 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.27:0.128,0.474,0.398 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.072,0.277,0.651 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.066:0.934,0.065,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.33:0.083,0.503,0.414 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:1.385:0.087,0.442,0.471 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.389:0.085,0.442,0.474 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.891:0.013,0.084,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.235:0.141,0.482,0.377 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19021018 SNP-3.19019777. C A . PASS AR2=0.89;DR2=0.922;AF=0.257 GT:DS:GP 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0.001 0|1:0.983:0.252,0.513,0.235 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 0|1:0.992:0.262,0.483,0.254 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.439:0.073,0.415,0.512 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.378:0.096,0.43,0.474 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.747:0.418,0.416,0.166 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.623:0.041,0.295,0.664 1|1:1.514:0.048,0.39,0.562 1|1:1.268:0.127,0.478,0.395 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.343:0.102,0.453,0.445 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 1|1:2:0,0,1 1|0:0.894:0.297,0.512,0.191 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.477:0.583,0.358,0.059 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.558:0.523,0.395,0.081 0|0:0:1,0,0 0|0:0.553:0.521,0.405,0.074 0|0:0:1,0,0 1|0:0.716:0.408,0.469,0.124 1|0:0.967:0.289,0.456,0.256 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.818:0.329,0.523,0.148 0|0:0:1,0,0 0|1:0.459:0.543,0.455,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0.031:0.97,0.03,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.521:0.106,0.266,0.628 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.547:0.476,0.5,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.614:0.045,0.296,0.659 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.548:0.073,0.305,0.622 1|0:1.255:0.114,0.517,0.369 0|0:0:1,0,0 0|1:1.197:0.155,0.493,0.352 0|0:0.56:0.522,0.396,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.328:0.686,0.299,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.188:0.209,0.394,0.397 0|0:0.388:0.703,0.207,0.091 0|1:1.21:0.176,0.438,0.386 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.517,0.399,0.084 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.633:0.041,0.285,0.674 1|1:1.622:0.044,0.29,0.666 0|1:1.366:0.113,0.408,0.479 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.596:0.499,0.406,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 1|1:2:0,0,1 +3 19021276 SNP-3.19020035. A G . PASS AR2=0.909;DR2=0.928;AF=0.484 GT:DS:GP 1|0:1.07:0.227,0.477,0.297 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.488:0.065,0.382,0.553 1|1:1.638:0.04,0.283,0.677 1|1:1.573:0.046,0.334,0.619 1|1:2:0,0,1 0|1:1.254:0.098,0.549,0.352 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|1:0.954:0.267,0.512,0.221 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.31:0.12,0.45,0.43 1|1:1.663:0.034,0.269,0.697 1|1:1.365:0.091,0.454,0.456 1|1:2:0,0,1 1|1:1.696:0.03,0.244,0.726 1|1:2:0,0,1 1|1:1.563:0.052,0.333,0.615 1|1:2:0,0,1 1|1:1.592:0.049,0.311,0.64 0|1:1.322:0.089,0.499,0.411 0|0:0:1,0,0 1|1:1.845:0.007,0.141,0.852 1|1:1.878:0,0.121,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.384:0.093,0.429,0.478 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.14:0.194,0.473,0.333 1|1:1.8:0.022,0.157,0.821 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.791:0.361,0.487,0.152 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.704:0.03,0.237,0.734 1|1:2:0,0,1 0|0:0.701:0.419,0.46,0.121 1|1:2:0,0,1 1|1:1.647:0.038,0.276,0.686 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.737,0.255,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.379:0.639,0.343,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|0:0.937:0.278,0.507,0.215 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.002:0.219,0.561,0.22 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.541:0.07,0.32,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.257:0.094,0.555,0.351 0|0:0.706:0.421,0.451,0.128 0|0:0.803:0.356,0.485,0.159 1|1:2:0,0,1 1|1:1.728:0.019,0.234,0.747 1|1:1.924:0.002,0.072,0.926 1|1:0.971:0.336,0.356,0.307 1|1:0.776:0.375,0.474,0.151 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.658:0.028,0.285,0.686 1|1:1.321:0.126,0.427,0.447 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0.003,0.078,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.254:0.158,0.431,0.412 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.27:0.134,0.462,0.404 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.218:0.122,0.539,0.339 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.39:0.098,0.414,0.488 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.631:0.036,0.296,0.668 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.002,0.056,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.646:0.039,0.276,0.685 1|0:0.752:0.386,0.475,0.138 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19022831 SNP-3.19021590. C A . PASS AR2=0.99;DR2=0.992;AF=0.348 GT:DS:GP 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.145:0.862,0.131,0.007 0|0:0.076:0.926,0.073,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.106:0.903,0.087,0.01 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.091,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.007,0.126,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.514:0.066,0.355,0.579 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:1.978:0,0.021,0.978 1|1:1.86:0.007,0.127,0.867 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.007,0.131,0.862 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.002,0.093,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.002,0.072,0.926 1|1:2:0,0,1 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.012,0.153,0.835 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19029066 SNP-3.19027825. A G . PASS AR2=0.888;DR2=0.91;AF=0.369 GT:DS:GP 0|1:1.333:0.12,0.426,0.453 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.115:0.198,0.49,0.312 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.252:0.138,0.471,0.391 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.169:0.188,0.454,0.357 0|1:1.054:0.228,0.489,0.283 1|0:1.118:0.196,0.491,0.313 1|1:1.38:0.104,0.412,0.484 1|0:1.114:0.2,0.486,0.314 0|1:1.109:0.199,0.493,0.308 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.588:0.044,0.324,0.632 1|1:1.685:0.024,0.266,0.709 1|0:1.371:0.116,0.397,0.487 1|1:1.294:0.117,0.471,0.412 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|0:1.433:0.071,0.426,0.504 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:1.694:0.026,0.255,0.72 1|1:1.694:0.023,0.26,0.717 1|1:1.645:0.005,0.345,0.65 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.5:0.056,0.388,0.556 1|1:1.05:0.232,0.486,0.282 0|0:0:1,0,0 1|1:1.702:0.023,0.252,0.725 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.708:0.021,0.25,0.729 1|1:2:0,0,1 0|1:1.328:0.119,0.434,0.447 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.753:0.015,0.216,0.768 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.396:0.076,0.452,0.472 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.488:0.08,0.353,0.568 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.708:0.022,0.247,0.73 0|0:0:1,0,0 1|1:1.757:0.016,0.211,0.773 0|1:1.034:0.237,0.492,0.271 1|0:1.022:0.245,0.488,0.267 1|0:1.064:0.231,0.473,0.295 1|1:2:0,0,1 1|0:0.728:0.354,0.564,0.082 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.172:0.143,0.542,0.315 0|0:0:1,0,0 1|0:1.083:0.214,0.489,0.297 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.145:0.183,0.489,0.328 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.615:0.046,0.294,0.661 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.687:0.025,0.263,0.712 1|1:1.753:0.017,0.213,0.77 1|1:1.98:0,0.019,0.98 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.29:0.12,0.47,0.41 1|0:0.832:0.311,0.547,0.142 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.338:0.103,0.457,0.441 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.424:0.086,0.404,0.51 1|1:1.717:0.021,0.242,0.738 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.087:0.213,0.488,0.299 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.045:0.234,0.487,0.279 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.045:0.234,0.487,0.279 0|1:1.044:0.234,0.488,0.278 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:1.993:0,0.007,0.993 1|1:1.666:0.028,0.279,0.694 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.192:0.169,0.469,0.362 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.392:0.1,0.408,0.492 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.925:0.002,0.072,0.926 0|0:0:1,0,0 1|1:2:0,0,1 +3 19033441 SNP-3.19032200. C A . PASS AR2=0.972;DR2=0.98;AF=0.44 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0.045:0.955,0.044,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.06:0.941,0.058,0.001 1|1:1.197:0.176,0.451,0.373 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.273:0.132,0.462,0.405 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.255:0.147,0.45,0.403 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.907,0.092,0.001 0|0:0:1,0,0 1|0:0.773:0.321,0.586,0.094 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:0.693:0.336,0.635,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.399:0.135,0.331,0.534 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.289:0.131,0.449,0.42 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.343:0.112,0.432,0.455 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|0:1.331:0.116,0.437,0.447 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.521:0.063,0.354,0.583 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19033520 SNP-3.19032279. A G . PASS AR2=0.924;DR2=0.947;AF=0.489 GT:DS:GP 1|1:1.668:0.03,0.272,0.698 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.003,0.078,0.92 1|1:1.982:0,0.017,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|1:0.636:0.466,0.433,0.101 1|1:1.992:0,0.008,0.992 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.223:0,0.777,0.223 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.873:0.005,0.117,0.878 1|1:1.59:0.045,0.32,0.635 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.599:0.491,0.42,0.09 1|1:2:0,0,1 1|1:1.711:0.02,0.249,0.731 0|1:1.397:0.095,0.414,0.492 0|0:0:1,0,0 1|1:1.833:0.006,0.156,0.839 0|1:0.715:0.414,0.456,0.129 1|1:1.888:0.003,0.106,0.891 1|1:2:0,0,1 0|1:1.214:0.091,0.603,0.306 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.713:0.416,0.456,0.129 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.124,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.745:0.395,0.466,0.139 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.005,0.124,0.872 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.171:0.118,0.592,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.676:0.438,0.448,0.114 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.412:0.646,0.297,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.652:0.454,0.439,0.107 1|1:2:0,0,1 0|0:0.636:0.47,0.423,0.107 1|1:2:0,0,1 1|1:1.533:0.047,0.373,0.58 1|0:0.715:0.415,0.456,0.129 0|0:0:1,0,0 1|1:1.763:0.009,0.219,0.772 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.823:0.008,0.16,0.832 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|0:1.444:0.005,0.546,0.449 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.152:0,0.848,0.152 1|1:1.911:0.002,0.084,0.914 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.005,0.131,0.864 0|0:0.634:0.472,0.421,0.106 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.007,0.154,0.839 1|1:2:0,0,1 0|1:1.301:0.048,0.604,0.349 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.661:0.449,0.441,0.11 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.885:0.004,0.107,0.889 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.428:0.628,0.316,0.056 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.35:0.108,0.434,0.458 1|1:1.849:0.006,0.138,0.855 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.297:0.737,0.229,0.034 0|1:0.43:0.608,0.354,0.038 1|1:1.831:0.007,0.154,0.839 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.007,0.134,0.859 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.003,0.052,0.944 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.709:0.055,0.181,0.764 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.442:0.621,0.316,0.063 1|1:2:0,0,1 1|1:1.866:0.006,0.121,0.873 +3 19034694 SNP-3.19033453. A G . PASS AR2=0.957;DR2=0.968;AF=0.318 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.447:0.604,0.346,0.051 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.009,0.118,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.509:0.105,0.282,0.614 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.482:0.573,0.373,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.003,0.077,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.147:0.012,0.829,0.159 0|0:0:1,0,0 0|0:0.135:0.872,0.12,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.323:0.71,0.257,0.033 0|1:0.883:0.279,0.559,0.162 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.81,0.173,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.82:0.373,0.435,0.193 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.633:0.498,0.372,0.13 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.561:0.538,0.362,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.631:0.031,0.307,0.662 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.947,0.049,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.002,0.073,0.925 1|1:1.917:0.002,0.079,0.919 1|1:1.955:0.001,0.042,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.452:0.604,0.34,0.056 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.003,0.136,0.861 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0.392:0.647,0.313,0.039 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.493:0.571,0.365,0.064 0|0:0:1,0,0 1|1:1.307:0.124,0.445,0.431 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.454:0.627,0.292,0.081 0|0:0:1,0,0 +3 19034859 SNP-3.19033618. C A . 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A G . PASS AR2=0.982;DR2=0.986;AF=0.488 GT:DS:GP 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 1|1:1.768:0.012,0.209,0.779 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.445:0.062,0.431,0.507 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.908,0.091,0.001 1|1:1.804:0.01,0.176,0.814 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.016,0.23,0.755 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.778:0.012,0.197,0.79 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.034:0.966,0.034,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|1:0.7:0.322,0.655,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.963:0.038,0.961,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.01,0.145,0.845 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.872:0.006,0.116,0.878 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.746:0.014,0.225,0.76 0|0:0:1,0,0 1|1:1.851:0.006,0.136,0.857 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0.012,0.173,0.815 1|1:1.62:0.034,0.312,0.654 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0.001,0.04,0.959 1|1:1.694:0.014,0.279,0.708 1|1:1.712:0.021,0.247,0.732 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.928:0.001,0.069,0.93 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.006,0.994 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.006,0.994 1|1:1.941:0.002,0.055,0.943 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 +3 19038303 SNP-3.19037062. C A . PASS AR2=0.937;DR2=0.947;AF=0.315 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.006,0.122,0.872 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.679:0.436,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.68:0.436,0.449,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.695:0.427,0.452,0.121 0|0:0.674:0.439,0.447,0.114 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.679:0.436,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.733:0.027,0.212,0.761 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.959,0.039,0.002 1|1:1.848:0.005,0.141,0.854 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.01,0.181,0.81 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.666:0.036,0.261,0.702 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.681:0.435,0.449,0.116 1|0:0.681:0.435,0.449,0.116 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.787:0.376,0.461,0.163 1|1:1.838:0.009,0.143,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.679:0.436,0.448,0.115 0|0:0.695:0.427,0.452,0.121 0|0:0.024:0.976,0.023,0 1|0:0.679:0.436,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.679:0.436,0.448,0.115 0|0:0.679:0.436,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.008,0.124,0.868 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.796,0.204,0 0|0:0:1,0,0 1|0:0.679:0.436,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.679:0.436,0.448,0.115 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.679:0.436,0.448,0.115 1|0:0.679:0.436,0.448,0.115 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.672:0.441,0.446,0.113 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.684:0.433,0.45,0.117 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.001,0.132,0.867 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.68:0.436,0.449,0.116 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.299:0.746,0.208,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19039014 SNP-3.19037773. C A . PASS AR2=0.927;DR2=0.946;AF=0.314 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.535:0.056,0.354,0.591 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.254:0.762,0.221,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.323:0.714,0.248,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.792,0.2,0.009 0|0:0:1,0,0 0|0:0.234:0.78,0.205,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.602:0.05,0.298,0.652 1|1:2:0,0,1 1|1:1.825:0.009,0.158,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.249:0.222,0.307,0.471 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.765:0.031,0.173,0.796 0|0:0:1,0,0 1|1:1.624:0.023,0.33,0.647 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:1.715:0.019,0.248,0.734 0|0:0.001:0.999,0.001,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.615:0.047,0.292,0.662 0|1:1:0,1,0 1|1:1.909:0.006,0.079,0.915 1|1:1.36:0.101,0.437,0.461 0|0:0.24:0.775,0.21,0.015 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.709:0.023,0.245,0.732 0|0:0.237:0.778,0.207,0.015 1|1:1.621:0.033,0.313,0.654 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.528:0.059,0.353,0.588 0|0:0:1,0,0 1|1:1.678:0.016,0.289,0.694 1|1:2:0,0,1 0|0:0.239:0.776,0.209,0.015 0|0:0.239:0.776,0.209,0.015 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.618:0.527,0.329,0.145 1|1:2:0,0,1 1|1:1.762:0.015,0.207,0.777 1|1:2:0,0,1 1|1:1.802:0.015,0.169,0.816 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.009,0.173,0.818 1|1:1.681:0.033,0.254,0.714 1|1:2:0,0,1 1|1:1.658:0.038,0.265,0.697 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.761:0.015,0.208,0.777 1|1:1.767:0.015,0.204,0.782 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.01,0.073,0.917 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.666:0.026,0.282,0.692 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.727:0.017,0.24,0.743 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.555:0.06,0.326,0.615 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.002,0.035,0.963 0|0:0:1,0,0 0|0:0.34:0.696,0.268,0.036 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.294:0.23,0.246,0.524 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.012,0.14,0.848 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.8:0.008,0.184,0.808 1|1:2:0,0,1 1|1:1.583:0.052,0.313,0.635 1|1:1.757:0.016,0.212,0.773 0|0:0.234:0.78,0.205,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19041315 SNP-3.19040074. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19043574 SNP-3.19042333. C A . PASS AR2=0.996;DR2=0.997;AF=0.353 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.653:0.075,0.198,0.728 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.755:0.039,0.168,0.793 0|0:0:1,0,0 +3 19044516 SNP-3.19043275. A G . PASS AR2=0.996;DR2=0.996;AF=0.514 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.923:0.002,0.074,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.097,0.9 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.934 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.922:0.002,0.075,0.924 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.03,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.002,0.089,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.002,0.074,0.924 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.906:0.003,0.088,0.909 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.902:0.004,0.091,0.906 1|1:1.904:0.003,0.091,0.907 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19045129 SNP-3.19043888. C A . PASS AR2=0.998;DR2=0.999;AF=0.361 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.067,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.117:0.886,0.11,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.086,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19046131 SNP-3.19044890. A G . PASS AR2=0.999;DR2=0.999;AF=0.203 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.136:0.869,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19046856 SNP-3.19045615. C A . PASS AR2=0.978;DR2=0.978;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.947:0.278,0.496,0.226 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.99:0.253,0.504,0.243 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.99:0.253,0.504,0.243 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.99:0.253,0.504,0.243 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.995:0.251,0.504,0.246 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.99:0.253,0.504,0.243 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.977:0.262,0.499,0.239 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.99:0.253,0.504,0.243 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.99:0.253,0.504,0.243 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.99:0.253,0.504,0.243 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19046904 SNP-3.19045663. A G . PASS AR2=0.987;DR2=0.989;AF=0.235 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.675:0.438,0.449,0.113 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.744:0.393,0.47,0.137 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.744:0.393,0.47,0.137 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.742:0.396,0.466,0.138 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19046950 SNP-3.19045709. C A . PASS AR2=0.982;DR2=0.983;AF=0.415 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.939,0.056,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.959:0.271,0.499,0.23 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.959:0.271,0.499,0.23 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.959:0.271,0.499,0.23 1|1:2:0,0,1 0|0:0.485:0.518,0.479,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.959:0.271,0.499,0.23 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.959:0.271,0.499,0.23 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.959:0.271,0.499,0.23 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.959:0.271,0.499,0.23 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19049058 SNP-3.19047817. C A . PASS AR2=1;DR2=1;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19049571 SNP-3.19048330. C A . PASS AR2=0.961;DR2=0.966;AF=0.434 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.221:0.79,0.2,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.221:0.794,0.191,0.015 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.075:0.926,0.074,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.865,0.128,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.448:0.628,0.295,0.077 0|0:0:1,0,0 0|0:0.108:0.898,0.097,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 1|0:0.901:0.3,0.499,0.201 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.082:0.921,0.076,0.003 0|1:0.863:0.323,0.49,0.186 0|0:0.017:0.983,0.017,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 1|1:2:0,0,1 0|0:0.859:0.329,0.484,0.188 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.457:0.563,0.416,0.02 0|0:0.386:0.632,0.349,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.476:0.535,0.455,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.897:0.305,0.494,0.201 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.901:0.3,0.499,0.201 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.105:0.898,0.098,0.003 0|0:0.239:0.786,0.188,0.026 0|0:0:1,0,0 0|0:0.115:0.891,0.103,0.006 0|0:0.35:0.691,0.267,0.042 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.144:0.86,0.137,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.901:0.3,0.499,0.201 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.901:0.3,0.499,0.201 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.897:0.305,0.494,0.201 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.901:0.3,0.499,0.201 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19050988 SNP-3.19049747. C A . PASS AR2=0.973;DR2=0.974;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.041:0.96,0.039,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.896:0.303,0.499,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:0.896:0.303,0.499,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.939:0.284,0.492,0.224 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.896:0.303,0.499,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.477:0.528,0.466,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.888:0.309,0.493,0.198 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.101:0.224,0.451,0.325 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.853:0.331,0.486,0.183 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.896:0.303,0.499,0.199 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.939:0.284,0.492,0.224 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.853:0.331,0.486,0.183 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.888:0.309,0.493,0.198 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19052901 SNP-3.19051660. C A . PASS AR2=0.96;DR2=0.972;AF=0.457 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 0|0:0.029:0.972,0.028,0 0|0:0.064:0.937,0.062,0.001 0|0:0.046:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.244:0.13,0.497,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 0|0:0.039:0.962,0.038,0 1|0:1:0,1,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.908,0.09,0.002 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 1|0:1.307:0.105,0.483,0.412 0|0:0:1,0,0 1|1:1.523:0.057,0.362,0.581 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0.001 0|0:0:1,0,0 1|1:1.523:0.057,0.362,0.581 0|0:0.006:0.995,0.005,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.988,0.012,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.781:0.257,0.706,0.038 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.523:0.057,0.362,0.581 1|1:2:0,0,1 0|0:0.027:0.974,0.026,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.523:0.057,0.362,0.581 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.523:0.057,0.362,0.581 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.523:0.057,0.362,0.581 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.972,0.028,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.523:0.057,0.362,0.581 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.523:0.057,0.362,0.581 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.523:0.057,0.362,0.581 0|0:0:1,0,0 0|0:0.051:0.949,0.05,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.523:0.057,0.362,0.581 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.523:0.057,0.362,0.581 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.523:0.057,0.362,0.581 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.523:0.057,0.362,0.581 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19053056 SNP-3.19051815. A G . 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C A . 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C A . PASS AR2=0.999;DR2=0.999;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.912,0.077,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19065690 SNP-3.19064449. C A . PASS AR2=0.961;DR2=0.968;AF=0.308 GT:DS:GP 0|0:0:1,0,0 1|1:1.771:0.005,0.219,0.776 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.676:0.025,0.275,0.7 1|1:2:0,0,1 1|1:1.521:0.08,0.319,0.601 1|1:1.649:0.034,0.283,0.683 1|1:1.658:0.028,0.285,0.687 1|1:1.869:0.005,0.12,0.875 0|0:0:1,0,0 1|1:1.934:0.002,0.062,0.936 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.848:0.01,0.132,0.858 1|1:1.805:0.012,0.171,0.817 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.5:0.043,0.415,0.542 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.654:0.032,0.281,0.686 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.739:0.015,0.231,0.754 0|0:0:1,0,0 1|1:1.847:0.006,0.14,0.854 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.725:0.016,0.243,0.741 1|1:1.627:0.036,0.3,0.664 1|1:1.643:0.034,0.289,0.677 1|1:1.652:0.035,0.279,0.687 1|1:1.852:0.007,0.135,0.859 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.944:0.002,0.053,0.945 1|1:1.927:0.002,0.068,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.007,0.131,0.862 1|1:2:0,0,1 1|1:1.797:0.011,0.181,0.808 1|1:1.842:0.008,0.142,0.85 1|1:1.843:0.006,0.145,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.694:0.03,0.246,0.724 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.653:0.039,0.27,0.692 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0.007,0.176,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.886:0.008,0.097,0.894 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.006,0.13,0.864 0|0:0:1,0,0 1|1:1.82:0.009,0.162,0.829 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.002,0.056,0.942 1|1:2:0,0,1 1|1:1.811:0.016,0.157,0.827 1|1:2:0,0,1 1|1:1.89:0.005,0.101,0.895 1|1:2:0,0,1 1|1:1.875:0.005,0.116,0.879 1|1:1.875:0.005,0.116,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.86:0.006,0.128,0.866 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19076909 SNP-3.19075668. C A . PASS AR2=0.991;DR2=0.992;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.866:0.006,0.123,0.871 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.877:0.005,0.113,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.757:0.038,0.167,0.795 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:1.883:0.003,0.111,0.886 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.003,0.116,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.003,0.089,0.908 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.973,0.026,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0,0.046,0.953 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.003,0.066,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.916:0.002,0.08,0.918 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.166:0.841,0.152,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:1.899:0.005,0.092,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.968 1|1:1.975:0,0.024,0.975 0|1:1:0,1,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.902:0.004,0.089,0.907 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19077956 SNP-3.19076715. A G . PASS AR2=0.948;DR2=0.953;AF=0.32 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.023:0.295,0.387,0.318 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.926:0.278,0.518,0.204 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.596:0.473,0.458,0.069 1|1:2:0,0,1 1|0:1.092:0.208,0.492,0.3 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.296:0.728,0.248,0.024 0|1:1.129:0.191,0.488,0.321 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.048:0.229,0.495,0.277 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.936,0.062,0.002 0|0:0.966:0.281,0.472,0.247 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.546:0.49,0.474,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.092:0.207,0.494,0.299 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.094:0.206,0.494,0.3 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.13:0.191,0.488,0.321 1|0:1.1:0.204,0.493,0.303 1|1:2:0,0,1 1|1:1.126:0.193,0.489,0.319 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.069:0.216,0.498,0.285 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.894,0.088,0.018 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.069:0.216,0.498,0.285 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.874,0.126,0 1|1:2:0,0,1 0|1:1.094:0.206,0.494,0.3 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.073:0.215,0.498,0.288 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.13:0.191,0.488,0.321 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.891,0.1,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.093:0.208,0.492,0.3 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19079194 SNP-3.19077953. A G . PASS AR2=0.981;DR2=0.984;AF=0.509 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:1.926:0.006,0.062,0.932 1|1:1.803:0.009,0.179,0.812 1|1:2:0,0,1 1|1:1.915:0.002,0.082,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.009,0.153,0.838 1|1:2:0,0,1 1|1:1.862:0.008,0.121,0.871 0|0:0:1,0,0 1|1:1.716:0.021,0.241,0.738 1|1:1.853:0.004,0.14,0.856 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.01,0.157,0.834 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.935:0.001,0.062,0.936 1|1:1.796:0.011,0.181,0.808 1|1:2:0,0,1 1|1:1.939:0.002,0.058,0.94 1|1:2:0,0,1 1|1:1.822:0.006,0.166,0.828 1|1:2:0,0,1 0|1:0.934:0.114,0.838,0.048 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.537:0.038,0.386,0.576 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.932:0.002,0.065,0.933 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.92:0.112,0.855,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.01,0.14,0.85 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.834:0.006,0.153,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.004,0.113,0.883 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.052,0.946 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:1.967:0,0.032,0.967 1|1:1.95:0.001,0.047,0.952 1|1:1.772:0.001,0.226,0.773 1|1:1.925:0.002,0.072,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.916:0.002,0.08,0.918 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.003,0.119,0.878 1|1:1.818:0.011,0.161,0.829 1|1:1.828:0.007,0.159,0.834 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.008,0.118,0.874 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19085363 SNP-3.19084122. A G . PASS AR2=0.991;DR2=0.992;AF=0.264 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0,0.05,0.95 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.128:0.876,0.12,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.874,0.12,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0.088:0.916,0.08,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 1|1:1.938:0.002,0.059,0.939 0|0:0.081:0.921,0.078,0.002 0|0:0.125:0.88,0.114,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.934,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.003,0.106,0.891 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19086741 SNP-3.19085500. A G . PASS AR2=0.952;DR2=0.959;AF=0.468 GT:DS:GP 0|1:1.359:0.069,0.503,0.428 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.877:0.005,0.114,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.873:0.008,0.111,0.881 1|1:2:0,0,1 1|1:1.871:0.006,0.117,0.877 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.865:0.006,0.123,0.871 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|1:1.875:0.007,0.112,0.882 1|1:2:0,0,1 1|1:1.83:0.011,0.148,0.841 1|1:1.918:0.004,0.075,0.921 1|1:1.889:0.005,0.101,0.894 1|1:1.964:0,0.036,0.964 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.003,0.086,0.911 1|1:2:0,0,1 1|1:1.75:0.015,0.221,0.765 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.74:0.014,0.232,0.754 1|1:1.716:0.024,0.236,0.74 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.358:0.078,0.486,0.436 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.264:0.101,0.533,0.365 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.711:0.019,0.251,0.73 1|1:1.305:0.083,0.53,0.387 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.685:0.028,0.258,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0.013,0.198,0.789 1|0:1.66:0.028,0.284,0.688 0|1:1.036:0.251,0.462,0.287 0|1:0.861:0.15,0.838,0.011 1|0:0.851:0.156,0.838,0.007 1|1:1.802:0.009,0.179,0.812 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.911:0.127,0.836,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.011,0.191,0.798 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|1:1.83:0.009,0.152,0.839 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:1.933:0.001,0.064,0.935 1|1:1.854:0.01,0.125,0.865 1|1:2:0,0,1 1|1:1.784:0.014,0.187,0.798 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.811:0.01,0.168,0.821 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 1|1:1.898:0.004,0.094,0.902 1|1:1.885:0.003,0.109,0.888 1|1:1.886:0.004,0.105,0.89 1|0:1.27:0.029,0.673,0.299 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.017,0.194,0.789 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.727:0.018,0.237,0.745 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0,0.051,0.948 1|1:1.79:0.008,0.195,0.797 1|1:2:0,0,1 1|0:1.692:0.018,0.273,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.708:0.027,0.237,0.735 1|1:1.747:0.032,0.189,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:1.932:0.002,0.064,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.011,0.171,0.818 1|1:1.807:0.013,0.168,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.003,0.085,0.912 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.688:0.027,0.257,0.716 1|1:1.668:0.03,0.272,0.698 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.003,0.171,0.826 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19087267 SNP-3.19086026. A G . PASS AR2=0.999;DR2=0.999;AF=0.249 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19087338 SNP-3.19086097. C A . PASS AR2=0.979;DR2=0.983;AF=0.448 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.302:0.121,0.456,0.423 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.239:0.145,0.471,0.384 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.927,0.069,0.003 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.379:0.106,0.408,0.486 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.408:0.598,0.395,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.078:0.923,0.076,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.283:0.131,0.455,0.414 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.295:0.128,0.45,0.423 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.284:0.131,0.455,0.414 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.043:0.215,0.526,0.258 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 19087621 SNP-3.19086380. C A . PASS AR2=0.986;DR2=0.988;AF=0.343 GT:DS:GP 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.847,0.153,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.045,0.193,0.763 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.543:0.612,0.234,0.154 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.071:0.931,0.067,0.002 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.071:0.931,0.067,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.071:0.931,0.067,0.002 0|0:0.071:0.931,0.067,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.071:0.931,0.067,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0.074:0.928,0.07,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.067:0.935,0.063,0.002 0|0:0.004:0.996,0.004,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0.07:0.932,0.066,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.067:0.935,0.063,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.935,0.063,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19089509 SNP-3.19088268. A G . PASS AR2=0.869;DR2=0.902;AF=0.241 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.577:0.133,0.157,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.807,0.178,0.015 0|0:0:1,0,0 0|0:0.508:0.568,0.357,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 0|0:0.541:0.538,0.383,0.079 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.32:0.707,0.265,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.258:0.761,0.221,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|0:0.886:0.115,0.884,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.513:0.557,0.372,0.07 0|0:0.542:0.532,0.393,0.075 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.599:0.493,0.415,0.092 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.152:0.181,0.486,0.333 0|0:0.519:0.552,0.377,0.071 0|0:0:1,0,0 0|1:1.104:0.099,0.697,0.204 0|0:0:1,0,0 1|1:1.196:0.159,0.485,0.356 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.136:0.87,0.125,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.668:0.439,0.454,0.107 0|0:0:1,0,0 0|0:0.61:0.486,0.418,0.096 0|0:0.425:0.623,0.329,0.048 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.83:0.318,0.535,0.147 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.183:0.827,0.164,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.299:0.749,0.203,0.048 0|0:0:1,0,0 1|1:1.103:0.201,0.495,0.304 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.155:0.18,0.485,0.335 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.183:0.166,0.484,0.349 0|0:0:1,0,0 0|0:0.433:0.621,0.324,0.054 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.155:0.18,0.485,0.335 1|1:1.18:0.167,0.485,0.348 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.147:0.184,0.485,0.331 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.109,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.64:0.46,0.439,0.1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.515:0.553,0.379,0.068 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.188:0.163,0.487,0.351 0|0:0.003:0.997,0.003,0 1|0:0.767:0.408,0.418,0.174 0|0:0.05:0.952,0.046,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.791,0.195,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.566:0.516,0.403,0.081 1|1:1.18:0.168,0.485,0.348 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.619:0.477,0.428,0.096 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.778:0.342,0.539,0.12 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.519:0.55,0.381,0.069 0|0:0.568:0.515,0.402,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.53:0.542,0.386,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.419:0.635,0.312,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.574:0.51,0.406,0.084 +3 19092918 SNP-3.19091677. C A . PASS AR2=0.983;DR2=0.988;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:1.876:0.004,0.116,0.88 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.888:0.004,0.105,0.892 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.406:0.637,0.319,0.044 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.284:0.736,0.243,0.02 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.004,0.085,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.728,0.25,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.005,0.121,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:1.834:0.008,0.15,0.842 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.003,0.079,0.918 1|1:1.885:0.005,0.106,0.89 0|0:0:1,0,0 0|0:0.284:0.737,0.243,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.278:0.327,0.067,0.605 0|0:0:1,0,0 +3 19095009 SNP-3.19093768. A G . PASS AR2=0.949;DR2=0.963;AF=0.295 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.893,0.106,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.678:0.437,0.448,0.115 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.665:0.446,0.443,0.111 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.598:0.494,0.414,0.092 1|1:2:0,0,1 1|0:0.666:0.445,0.443,0.111 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.678:0.437,0.448,0.115 0|0:0.671:0.442,0.445,0.113 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.266:0.003,0.727,0.269 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.623:0.475,0.428,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.678:0.437,0.448,0.115 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.677:0.438,0.448,0.115 0|1:0.678:0.437,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.678:0.437,0.448,0.115 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.679:0.437,0.448,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.676:0.438,0.447,0.115 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.678:0.437,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.678:0.437,0.448,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19096319 SNP-3.19095078. C A . PASS AR2=0.987;DR2=0.992;AF=0.427 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.604:0.044,0.307,0.648 1|1:1.407:0.089,0.416,0.495 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.402:0.09,0.418,0.492 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.539:0.054,0.354,0.592 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.011,0.128,0.861 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.627:0.044,0.286,0.671 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19097885 SNP-3.19096644. A G . PASS AR2=0.912;DR2=0.932;AF=0.259 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.813,0.174,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.354:0.678,0.29,0.032 0|0:0.021:0.979,0.021,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.767:0.019,0.195,0.786 0|0:0.502:0.556,0.386,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.74:0.393,0.473,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.612:0.48,0.428,0.092 0|0:0.318:0.707,0.267,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.053,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|1:1.354:0.08,0.486,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.021,0.234,0.745 1|1:2:0,0,1 1|1:1.784:0.012,0.191,0.796 1|1:1.748:0.017,0.217,0.765 1|1:2:0,0,1 0|0:0.365:0.648,0.339,0.013 1|1:2:0,0,1 0|1:1.511:0.059,0.372,0.569 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.363:0.65,0.337,0.013 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.222:0.79,0.198,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.25:0.766,0.218,0.016 1|1:1.796:0.011,0.182,0.807 0|0:0.064:0.937,0.062,0.001 0|0:0.256:0.76,0.223,0.016 1|1:1.605:0.043,0.31,0.647 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.173:0.18,0.468,0.353 1|1:1.777:0.015,0.194,0.792 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.123:0.103,0.672,0.226 1|1:2:0,0,1 1|1:1.815:0.009,0.167,0.824 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.49:0.067,0.376,0.557 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.017,0.204,0.779 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 1|1:1.687:0.027,0.259,0.714 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.78:0.013,0.194,0.793 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.922,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.636:0.448,0.469,0.084 0|0:0:1,0,0 0|0:0.332:0.698,0.272,0.03 1|0:1.765:0.016,0.202,0.781 1|1:1.733:0.037,0.193,0.77 1|1:1.612:0.044,0.299,0.656 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.363:0.126,0.385,0.489 1|1:1.606:0.036,0.321,0.643 0|1:1.221:0.159,0.46,0.38 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.424:0.634,0.308,0.058 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.373:0.64,0.346,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.708:0.023,0.245,0.731 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.508:0.068,0.355,0.577 +3 19097980 SNP-3.19096739. A G . PASS AR2=0.981;DR2=0.983;AF=0.518 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0.001,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.161:0.846,0.148,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.15:0.179,0.493,0.328 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0.001,0.058,0.94 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.104:0.899,0.098,0.003 1|1:2:0,0,1 1|1:1.918:0.001,0.079,0.92 1|1:2:0,0,1 1|1:1.839:0.01,0.14,0.85 1|1:2:0,0,1 0|0:0.118:0.886,0.11,0.004 1|1:1.895:0.004,0.098,0.899 1|1:2:0,0,1 0|0:0.13:0.874,0.121,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.922 1|1:2:0,0,1 1|1:1.784:0.006,0.204,0.79 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.932:0.107,0.853,0.039 1|1:2:0,0,1 1|1:1.904:0.003,0.091,0.906 0|1:0.989:0.225,0.562,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.883,0.114,0.003 0|0:0:1,0,0 1|0:1.048:0.221,0.51,0.269 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.16:0.849,0.143,0.009 0|0:0.1:0.903,0.095,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.916:0.002,0.081,0.917 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.882,0.114,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.951:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.104:0.899,0.098,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.808:0.012,0.168,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.854,0.139,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.891:0.015,0.079,0.906 0|0:0.145:0.866,0.123,0.011 1|1:2:0,0,1 +3 19103719 SNP-3.19102478. C A . PASS AR2=0.96;DR2=0.97;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.885,0.111,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.901:0,0.098,0.901 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:1.619:0.029,0.323,0.648 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.836,0.155,0.009 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.812,0.177,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 1|0:0.198:0.813,0.176,0.011 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.196:0.814,0.175,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.682:0.014,0.29,0.696 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.653:0.026,0.295,0.679 0|0:0:1,0,0 1|1:1.671:0.018,0.292,0.69 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 1|1:1.423:0.087,0.403,0.51 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.892:0.001,0.105,0.893 1|1:1.724:0.014,0.247,0.739 1|1:2:0,0,1 0|0:0.208:0.803,0.185,0.012 1|1:1.888:0.001,0.109,0.89 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.377:0.103,0.417,0.48 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0.001,0.028,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.202:0.809,0.18,0.011 0|0:0.195:0.815,0.174,0.011 0|0:0.002:0.998,0.002,0 0|0:0.203:0.808,0.181,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.802,0.186,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.734,0.243,0.023 0|0:0:1,0,0 0|0:0.191:0.819,0.171,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.695:0.028,0.248,0.723 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.206:0.805,0.183,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.084:0.92,0.075,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.007,0.099,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.722:0.019,0.24,0.741 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.395:0.22,0.165,0.615 0|0:0:1,0,0 +3 19104084 SNP-3.19102843. A G . PASS AR2=0.887;DR2=0.919;AF=0.343 GT:DS:GP 1|0:1.389:0.096,0.418,0.485 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.415:0.158,0.269,0.573 1|1:1.458:0.069,0.403,0.528 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.007,0.131,0.862 1|1:2:0,0,1 1|1:1.441:0.072,0.414,0.513 1|0:1.204:0.152,0.492,0.356 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.132:0.208,0.453,0.339 1|1:1.699:0.005,0.292,0.704 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.551:0.053,0.343,0.604 1|1:2:0,0,1 1|1:1.714:0.032,0.222,0.746 0|0:0:1,0,0 1|0:1.306:0.032,0.629,0.338 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.575:0.042,0.341,0.617 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.419:0.086,0.41,0.504 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.345:0.115,0.426,0.46 1|1:1.507:0.061,0.371,0.568 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.497:0.065,0.372,0.562 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.123:0.2,0.476,0.323 0|0:0:1,0,0 1|1:1.48:0.069,0.382,0.549 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.544:0.054,0.349,0.597 0|1:1.3:0.133,0.435,0.433 1|0:1.483:0.068,0.381,0.551 1|1:2:0,0,1 0|1:1.35:0.103,0.445,0.453 0|0:0:1,0,0 0|0:0.588:0.502,0.408,0.09 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.405:0.082,0.431,0.487 0|1:0.698:0.383,0.536,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.549:0.054,0.344,0.602 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.374:0.099,0.427,0.474 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0.56:0.578,0.284,0.138 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.803,0.18,0.016 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.857:0.005,0.133,0.862 1|1:2:0,0,1 1|1:1.862:0.006,0.125,0.869 0|0:0.562:0.521,0.396,0.083 0|0:0.138:0.869,0.125,0.007 0|0:0:1,0,0 0|0:0.157:0.852,0.139,0.009 1|1:1.512:0.062,0.365,0.573 0|0:0:1,0,0 1|0:1.434:0.067,0.432,0.501 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.807:0.019,0.154,0.827 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.477:0.069,0.386,0.545 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.707:0.028,0.236,0.736 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.003,0.087,0.91 1|0:1.422:0.082,0.414,0.504 1|1:1.89:0.003,0.103,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.597:0.046,0.312,0.643 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.23:0.196,0.377,0.427 1|1:1.884:0.005,0.106,0.889 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.057:0.283,0.377,0.34 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.88,0.111,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.53:0.059,0.351,0.589 0|0:0:1,0,0 1|1:1.43:0.082,0.406,0.512 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.003,0.089,0.908 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.505:0.064,0.367,0.569 +3 19104548 SNP-3.19103307. C A . PASS AR2=0.963;DR2=0.971;AF=0.379 GT:DS:GP 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.2:0.814,0.173,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.908,0.089,0.003 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.886,0.11,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.125:0.88,0.115,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.736,0.243,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.002 0|0:0.031:0.97,0.028,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.69,0.281,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0.007:0.993,0.007,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.034,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.312:0.712,0.263,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.712,0.263,0.025 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.864,0.135,0.001 0|0:0.174:0.828,0.171,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.323:0.702,0.272,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.872,0.127,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.313:0.712,0.263,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.311:0.714,0.262,0.025 0|0:0.313:0.712,0.263,0.025 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.308:0.716,0.26,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.712,0.263,0.025 0|0:0.313:0.712,0.263,0.025 0|0:0.045:0.956,0.044,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.062:0.94,0.058,0.002 0|0:0.013:0.987,0.013,0 0|0:0.313:0.712,0.263,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.314:0.711,0.264,0.025 0|0:0.312:0.713,0.262,0.025 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.307:0.717,0.259,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0.001 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.312:0.712,0.263,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.303:0.72,0.256,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.32:0.706,0.268,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.615:0.135,0.114,0.75 0|0:0:1,0,0 +3 19105632 SNP-3.19104391. C A . PASS AR2=0.99;DR2=0.991;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.758:0.01,0.221,0.768 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.006,0.136,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.967:0.001,0.032,0.967 0|0:0:1,0,0 1|1:1.911:0.002,0.085,0.913 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.006,0.139,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 1|1:1.931:0.002,0.064,0.933 1|1:1.863:0.006,0.124,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 1|1:1.977:0,0.022,0.977 1|1:1.944:0,0.056,0.944 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.001,0.086,0.913 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.003,0.122,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.005,0.111,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.011,0.181,0.808 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.881:0.004,0.111,0.885 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.93:0.002,0.067,0.931 0|0:0:1,0,0 +3 19107776 SNP-3.19106535. A G . PASS AR2=0.996;DR2=0.998;AF=0.285 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.002,0.078,0.919 1|1:1.933:0.001,0.065,0.934 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.535:0.01,0.446,0.545 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19107792 SNP-3.19106551. C A . PASS AR2=0.98;DR2=0.98;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.152:0.181,0.486,0.333 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.827:0.373,0.428,0.199 0|1:1.128:0.191,0.49,0.319 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.132:0.189,0.49,0.321 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.996:0,0.004,0.996 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.139:0.187,0.488,0.326 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.134:0.188,0.489,0.323 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.14:0.186,0.488,0.326 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:1.143:0.185,0.487,0.328 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|0:1.143:0.185,0.487,0.328 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19110031 SNP-3.19108790. A G . PASS AR2=0.954;DR2=0.964;AF=0.474 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.788:0.014,0.184,0.802 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.746:0.017,0.22,0.763 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.784:0.013,0.19,0.797 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.557:0.5,0.442,0.057 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.676:0.032,0.26,0.708 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.344:0.681,0.293,0.026 1|1:2:0,0,1 1|1:1.773:0.013,0.201,0.786 1|0:1.093:0.205,0.497,0.298 1|0:1.722:0.02,0.237,0.742 1|1:2:0,0,1 1|1:1.75:0.016,0.218,0.766 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.745:0.016,0.222,0.762 1|1:2:0,0,1 1|1:1.749:0.016,0.219,0.765 0|0:0.405:0.628,0.339,0.033 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.772:0.013,0.202,0.785 0|0:0:1,0,0 0|0:0.317:0.711,0.262,0.028 1|1:1.771:0.011,0.206,0.782 1|1:2:0,0,1 0|0:0.357:0.677,0.289,0.034 1|1:2:0,0,1 1|1:1.737:0.018,0.228,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.648:0.026,0.301,0.673 1|1:2:0,0,1 1|1:1.706:0.032,0.23,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.791:0.012,0.185,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.542:0.535,0.389,0.077 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.004,0.139,0.857 1|1:2:0,0,1 1|1:1.664:0.032,0.272,0.696 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.778:0.014,0.195,0.792 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.921:0.002,0.076,0.922 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 0|0:0:1,0,0 1|1:1.786:0.011,0.191,0.797 1|1:1.862:0.01,0.119,0.872 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.002,0.051,0.947 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.013,0.191,0.797 1|1:2:0,0,1 1|1:1.758:0.015,0.212,0.773 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.014,0.206,0.781 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.982 0|0:0.038:0.964,0.034,0.002 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.317:0.711,0.262,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.02,0.234,0.746 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.767:0.01,0.214,0.777 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.015,0.191,0.794 1|1:1.953:0.001,0.044,0.954 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.74,0.242,0.018 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19111719 SNP-3.19110478. C A . PASS AR2=0.976;DR2=0.986;AF=0.384 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.567:0.514,0.404,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.581:0.503,0.413,0.084 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.568:0.514,0.404,0.082 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.568:0.514,0.404,0.082 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.673:0.44,0.447,0.113 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.568:0.514,0.404,0.082 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.568:0.514,0.404,0.082 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.464:0.597,0.343,0.061 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19112213 SNP-3.19110972. A G . PASS AR2=0.857;DR2=0.889;AF=0.278 GT:DS:GP 0|0:0.253:0.772,0.203,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.029:0.243,0.485,0.272 0|0:0.052:0.95,0.048,0.002 0|0:0:1,0,0 0|1:0.957:0.271,0.501,0.228 0|1:1.198:0.175,0.452,0.373 1|1:2:0,0,1 1|1:1.267:0.126,0.481,0.393 0|0:0:1,0,0 0|0:0.751:0.397,0.455,0.148 1|1:1.547:0.053,0.347,0.6 0|0:0:1,0,0 1|0:0.715:0.417,0.452,0.131 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.922:0.179,0.719,0.102 1|1:2:0,0,1 1|0:0.728:0.416,0.439,0.145 0|0:0:1,0,0 0|0:0.098:0.904,0.093,0.002 0|0:0.22:0.784,0.212,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.897:0.001,0.102,0.898 1|1:2:0,0,1 0|0:0.44:0.616,0.328,0.056 1|1:1.501:0.066,0.367,0.567 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.163:0.182,0.473,0.345 1|1:0.888:0.315,0.482,0.203 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.956:0.26,0.524,0.216 1|1:2:0,0,1 1|1:1.454:0.087,0.372,0.541 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0.512:0.508,0.472,0.02 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.104:0.214,0.467,0.318 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.271:0.735,0.259,0.006 0|0:0.431:0.641,0.287,0.072 0|0:0.274:0.745,0.237,0.019 0|0:0.236:0.79,0.184,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.147:0.185,0.483,0.332 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.856,0.14,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.314:0.717,0.251,0.031 0|0:0.067:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0.202:0.806,0.186,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.762,0.234,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.834,0.147,0.019 0|0:0:1,0,0 0|1:1.363:0.129,0.378,0.492 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.744:0.422,0.413,0.166 0|0:0.258:0.763,0.216,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.974:0.225,0.576,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.443:0.074,0.41,0.517 0|0:0:1,0,0 1|0:1.476:0.073,0.378,0.549 1|1:2:0,0,1 0|0:0.122:0.883,0.113,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.937:0.263,0.536,0.201 0|0:0:1,0,0 1|1:1.585:0.052,0.312,0.637 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.569:0.081,0.268,0.651 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 1|1:1.722:0.037,0.203,0.759 1|1:1.182:0.181,0.456,0.363 0|0:0:1,0,0 0|1:0.892:0.313,0.481,0.205 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.319:0.113,0.456,0.431 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.343:0.099,0.459,0.442 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.472:0.073,0.382,0.545 0|0:0:1,0,0 1|1:1.344:0.118,0.419,0.463 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.606:0.498,0.398,0.104 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.291:0.142,0.425,0.433 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.149:0.187,0.478,0.336 1|1:2:0,0,1 0|0:0.04:0.962,0.036,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.02:0.01,0.96,0.03 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0.539:0.552,0.356,0.092 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.673,0.296,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.843:0.338,0.482,0.181 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19113142 SNP-3.19111901. C A . PASS AR2=0.986;DR2=0.987;AF=0.411 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.21:0.145,0.501,0.355 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.986:0.255,0.504,0.241 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.99:0.255,0.5,0.245 0|1:0.967:0.267,0.498,0.234 0|0:0:1,0,0 0|1:0.965:0.268,0.498,0.233 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.967:0.267,0.498,0.234 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19113904 SNP-3.19112663. C A . PASS AR2=0.981;DR2=0.986;AF=0.406 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.033:0.249,0.468,0.283 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.534:0.087,0.292,0.621 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.711:0.292,0.706,0.002 0|0:0.34:0.661,0.338,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.604:0.015,0.365,0.619 1|1:1.853:0.01,0.127,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0,0.054,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.77:0.266,0.699,0.036 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.209:0.06,0.672,0.268 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.65:0.507,0.336,0.157 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.234:0.787,0.192,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.861:0.008,0.123,0.869 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19114865 SNP-3.19113624. C A . PASS AR2=0.886;DR2=0.91;AF=0.351 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.94:0.001,0.057,0.942 0|0:0.382:0.642,0.335,0.023 0|0:0:1,0,0 0|0:0.667:0.428,0.477,0.095 1|1:1.905:0.001,0.094,0.906 1|1:2:0,0,1 1|1:1.778:0.019,0.184,0.797 0|0:0.782:0.435,0.349,0.217 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.803:0.347,0.504,0.15 1|1:1.869:0.008,0.116,0.876 0|1:0.667:0.455,0.423,0.122 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.609:0.481,0.428,0.091 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.133:0.192,0.483,0.325 0|0:0:1,0,0 0|0:0.588:0.504,0.405,0.091 0|1:1.092:0.208,0.492,0.3 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.092:0.214,0.48,0.306 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.174:0.087,0.652,0.261 1|1:2:0,0,1 1|0:1.068:0.228,0.475,0.297 1|0:1.433:0.1,0.366,0.534 0|0:0.198:0.812,0.178,0.01 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 0|0:0.234:0.799,0.169,0.032 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|0:0.87:0.256,0.617,0.127 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0,0.09,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.613:0.479,0.428,0.093 0|0:0:1,0,0 0|1:1.401:0.082,0.435,0.483 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 1|1:1.72:0.008,0.264,0.728 0|0:0:1,0,0 1|1:1.746:0.018,0.219,0.763 0|0:0.194:0.816,0.174,0.01 0|0:0.158:0.851,0.14,0.009 0|0:0:1,0,0 1|1:1.897:0.004,0.095,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.889:0.294,0.524,0.182 1|1:1.764:0.006,0.223,0.77 0|0:0:1,0,0 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0.709:0.447,0.397,0.156 1|1:2:0,0,1 1|1:1.599:0.063,0.276,0.661 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.004,0.186,0.809 1|1:1.986:0,0.014,0.986 1|1:1.945:0.001,0.054,0.946 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.698:0.02,0.262,0.718 0|0:0:1,0,0 1|0:1.061:0.221,0.497,0.282 0|0:0.441:0.576,0.408,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.063:0.939,0.06,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 1|0:0.998:0.25,0.501,0.248 1|1:2:0,0,1 1|0:1.071:0.217,0.495,0.288 0|1:1.062:0.221,0.497,0.282 1|1:1.714:0.042,0.202,0.756 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.845:0.339,0.478,0.184 0|0:0.313:0.714,0.259,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.004,0.108,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.263:0.072,0.594,0.334 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.724:0.36,0.555,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.179:0.846,0.129,0.025 1|1:2:0,0,1 0|1:1.067:0.218,0.497,0.285 0|0:0.839:0.351,0.459,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.86:0.336,0.467,0.197 0|1:1.078:0.213,0.497,0.291 1|1:1.219:0.175,0.431,0.394 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.004:0.246,0.503,0.25 0|1:0.716:0.437,0.411,0.153 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.001,0.107,0.892 0|0:0:1,0,0 +3 19116045 SNP-3.19114804. C A . PASS AR2=0.997;DR2=0.997;AF=0.363 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.956:0.002,0.041,0.958 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0.069:0.932,0.066,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.036:0.965,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.978:0.001,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.048:0.952,0.047,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0.001,0.027,0.972 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.094:0.908,0.089,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19119983 SNP-3.19118742. A G . PASS AR2=0.917;DR2=0.936;AF=0.271 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.183:0.193,0.431,0.376 0|0:0:1,0,0 1|1:1.904:0.003,0.09,0.907 1|0:0.959:0.261,0.519,0.22 1|1:1.606:0.052,0.29,0.658 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.047:0.14,0.674,0.186 0|0:0:1,0,0 0|1:1.049:0.18,0.591,0.229 0|1:1.377:0.099,0.425,0.476 0|0:0:1,0,0 1|1:1.861:0.008,0.124,0.869 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 1|1:1.654:0.037,0.272,0.691 1|1:1.935:0,0.064,0.936 1|0:1.136:0.144,0.576,0.28 1|1:1.724:0.018,0.241,0.742 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.928:0.001,0.069,0.93 1|1:1.572:0.046,0.336,0.618 1|1:1.384:0.029,0.558,0.413 1|1:1.377:0.099,0.426,0.475 1|1:2:0,0,1 1|1:1.906:0.004,0.087,0.909 1|1:2:0,0,1 1|1:1.853:0.015,0.116,0.868 1|0:0.742:0.402,0.454,0.144 0|1:1.143:0.126,0.605,0.269 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.114:0.887,0.112,0.001 0|0:0.475:0.538,0.45,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.067:0.204,0.524,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.777,0.203,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.51:0.526,0.438,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.028:0.243,0.487,0.271 1|1:1.309:0.13,0.43,0.44 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.778,0.218,0.004 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.821,0.177,0.002 0|0:0.478:0.539,0.444,0.017 0|0:0.481:0.577,0.365,0.058 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:1.729:0.021,0.229,0.75 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.855:0.331,0.483,0.186 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.331:0.043,0.583,0.374 0|1:1.328:0.112,0.447,0.441 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.383:0.038,0.541,0.421 1|1:2:0,0,1 0|1:1.273:0.087,0.554,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.003,0.093,0.904 1|1:2:0,0,1 1|1:1.941:0.002,0.056,0.943 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.784:0.012,0.192,0.796 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19120835 SNP-3.19119594. C A . PASS AR2=0.965;DR2=0.976;AF=0.307 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.79:0.012,0.186,0.802 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.827:0.011,0.152,0.838 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1.153:0.174,0.498,0.328 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.928:0.001,0.071,0.928 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:1.354:0.093,0.46,0.447 1|0:1:0,1,0 0|1:1.401:0.095,0.409,0.496 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.523:0.545,0.388,0.067 1|0:0.681:0.443,0.433,0.124 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.499:0.043,0.415,0.542 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.693:0.047,0.213,0.74 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.851:0.007,0.134,0.858 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.812:0.016,0.156,0.828 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.876:0.013,0.097,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.006,0.109,0.885 1|1:1.961:0.001,0.037,0.962 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.274:0.164,0.397,0.439 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 19120968 SNP-3.19119727. A G . PASS AR2=0.917;DR2=0.936;AF=0.526 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.373:0.11,0.408,0.482 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:0.941:0.203,0.653,0.144 1|1:1.304:0.126,0.444,0.43 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.493:0.065,0.377,0.558 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.726:0.018,0.238,0.744 1|0:0.972:0.219,0.591,0.191 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.503:0.064,0.369,0.567 1|0:1:0,1,0 1|1:1.297:0.128,0.447,0.425 1|1:2:0,0,1 1|1:1.893:0.004,0.099,0.897 1|1:2:0,0,1 1|1:1.824:0.019,0.139,0.842 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0.001,0.025,0.974 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.966:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.003,0.104,0.893 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.722:0.338,0.601,0.06 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.997:0.233,0.536,0.23 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 0|0:0:1,0,0 1|1:1.242:0.148,0.462,0.39 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.101:0.216,0.468,0.317 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.616:0.042,0.301,0.657 1|1:1.725:0.019,0.237,0.744 1|1:1.441:0.06,0.44,0.501 1|0:1.327:0.13,0.414,0.457 1|1:1.55:0.063,0.324,0.613 1|1:1.31:0.111,0.469,0.421 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.033:0.221,0.526,0.253 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 1|1:1.914:0.003,0.08,0.917 0|0:0:1,0,0 0|1:1.135:0.216,0.434,0.35 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.476:0.074,0.376,0.55 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 1|1:1.904:0.003,0.09,0.907 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.548:0.525,0.402,0.073 1|1:1.899:0.005,0.091,0.904 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.543:0.054,0.35,0.596 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.614:0.063,0.259,0.677 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.73:0.02,0.23,0.75 0|1:1:0,1,0 1|1:1.294:0.121,0.463,0.416 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0.001,0.022,0.978 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:1.272:0.193,0.342,0.465 1|1:1.915:0.003,0.079,0.918 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.829:0.008,0.154,0.838 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.005,0.111,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.598:0.042,0.318,0.64 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.73:0.019,0.232,0.749 0|1:1.277:0.13,0.462,0.408 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:1.978:0.001,0.02,0.979 1|1:1.912:0.003,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.935 1|1:1.904:0.003,0.089,0.907 1|0:1.304:0.13,0.436,0.434 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.921:0.002,0.075,0.923 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.681:0.028,0.262,0.71 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.004,0.134,0.862 0|0:0:1,0,0 1|1:2:0,0,1 +3 19123027 SNP-3.19121786. A G . PASS AR2=0.876;DR2=0.91;AF=0.246 GT:DS:GP 0|0:0.176:0.83,0.164,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.364:0.66,0.315,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.719:0.393,0.494,0.113 0|0:0:1,0,0 1|1:1.6:0.074,0.251,0.675 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.346:0.683,0.289,0.028 0|0:0:1,0,0 1|0:1.022:0.245,0.488,0.267 0|0:0:1,0,0 0|0:0.615:0.482,0.42,0.097 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.691:0.426,0.457,0.117 0|0:0.602:0.558,0.281,0.161 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.805:0.197,0.8,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.998:0.252,0.498,0.25 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.897:0.253,0.598,0.149 0|0:0:1,0,0 0|0:0.234:0.781,0.204,0.015 0|0:0:1,0,0 0|0:0.487:0.58,0.354,0.067 1|1:1.784:0.017,0.182,0.801 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.956:0.288,0.468,0.244 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.315:0.161,0.363,0.476 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.033,0.187,0.781 1|0:0.882:0.313,0.492,0.195 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.351:0.135,0.379,0.486 1|0:0.821:0.315,0.549,0.136 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.875,0.125,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.492:0.062,0.385,0.553 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.223:0.785,0.208,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.612:0.037,0.313,0.65 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.526:0.544,0.386,0.07 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.804,0.184,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.831,0.157,0.012 0|0:0.542:0.535,0.387,0.078 1|0:0.599:0.474,0.453,0.073 0|0:0.648:0.459,0.433,0.107 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.831:0.33,0.509,0.161 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.743:0.359,0.538,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.629:0.454,0.462,0.083 1|0:0.477:0.58,0.363,0.057 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.798,0.19,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.428:0.075,0.422,0.503 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.09:0.913,0.085,0.003 0|0:0.531:0.54,0.389,0.071 0|0:0.586:0.505,0.404,0.091 1|1:1.59:0.035,0.339,0.626 0|0:0.126:0.879,0.116,0.005 1|0:0.936:0.074,0.916,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.252:0.776,0.195,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.447:0.091,0.37,0.538 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.734:0.024,0.219,0.758 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19123074 SNP-3.19121833. A G . PASS AR2=0.983;DR2=0.985;AF=0.348 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.068:0.933,0.066,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0.204:0.809,0.179,0.012 0|0:0.18:0.834,0.151,0.014 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.054:0.947,0.053,0.001 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.42:0.586,0.407,0.007 0|1:1:0,1,0 0|0:0.328:0.679,0.315,0.006 0|0:0.186:0.823,0.167,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.76:0.365,0.509,0.126 1|1:2:0,0,1 0|0:0.325:0.696,0.283,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.008,0.063,0.929 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.136:0.865,0.134,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.92:0.092,0.897,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.97,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.085:0.239,0.437,0.324 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19124647 SNP-3.19123406. A G . PASS AR2=0.95;DR2=0.962;AF=0.399 GT:DS:GP 1|1:1.362:0.091,0.457,0.452 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.856:0.01,0.125,0.866 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.349:0.677,0.297,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.958:0.063,0.917,0.02 0|0:0.234:0.782,0.201,0.017 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.705,0.273,0.023 0|0:0:1,0,0 0|0:0.059:0.943,0.055,0.002 0|0:0.109:0.894,0.102,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.623:0.391,0.596,0.014 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0.29:0.731,0.248,0.021 1|1:1.612:0,0.388,0.612 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.377:0.663,0.298,0.039 1|1:1.179:0.18,0.461,0.359 1|1:1.199:0.175,0.451,0.374 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.127:0.888,0.096,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.64:0.041,0.278,0.681 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.005,0.156,0.84 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.761:0.021,0.196,0.782 1|1:2:0,0,1 1|1:1.55:0.053,0.343,0.603 1|1:2:0,0,1 1|1:1.664:0.031,0.274,0.695 0|0:0.667:0.479,0.376,0.146 0|0:0:1,0,0 1|1:1.636:0.036,0.292,0.672 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.033,0.966 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.678:0.034,0.254,0.712 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.578:0.005,0.411,0.583 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0.111:0.893,0.103,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.346:0.686,0.282,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.95,0.046,0.003 0|0:0.274:0.743,0.24,0.017 0|0:0:1,0,0 0|0:0.159:0.846,0.148,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.071,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0.088:0.915,0.082,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.91,0.087,0.002 1|1:1.539:0.064,0.334,0.603 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.777,0.202,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.497:0.049,0.404,0.547 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.007,0.106,0.887 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19125149 SNP-3.19123908. C A . PASS AR2=1;DR2=1;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19127054 SNP-3.19125813. A G . PASS AR2=0.857;DR2=0.897;AF=0.349 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.922,0.075,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.361:0.106,0.427,0.467 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.396:0,0.604,0.396 0|1:1:0,1,0 1|1:1.314:0.118,0.451,0.431 1|1:1.369:0.101,0.429,0.47 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.444:0.082,0.392,0.526 0|1:1.295:0.126,0.453,0.421 1|1:2:0,0,1 1|1:1.36:0.106,0.427,0.466 1|1:2:0,0,1 1|1:1.445:0.086,0.383,0.531 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.361:0.106,0.427,0.467 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.827:0.01,0.154,0.836 0|0:1.268:0.14,0.453,0.407 1|1:2:0,0,1 1|0:1.174:0.155,0.517,0.328 0|1:1.09:0.211,0.488,0.301 1|1:2:0,0,1 1|1:1.614:0.04,0.306,0.654 0|1:0.933:0.28,0.507,0.213 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.582:0.052,0.315,0.633 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.024:0.223,0.53,0.247 1|1:1.473:0.076,0.376,0.548 0|0:0:1,0,0 0|0:0.761:0.43,0.38,0.191 1|1:2:0,0,1 1|0:0.65:0.43,0.49,0.08 0|0:0:1,0,0 1|0:1.29:0.14,0.43,0.43 1|0:1.22:0.153,0.474,0.373 0|0:0.196:0.81,0.183,0.007 0|0:0.307:0.7,0.294,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.897,0.103,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.002,0.094,0.904 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.667:0.52,0.293,0.187 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.101:0.227,0.444,0.329 1|1:1.724:0.022,0.232,0.746 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.197:0.15,0.504,0.347 1|1:2:0,0,1 1|1:1.361:0.106,0.427,0.467 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|1:0.974:0.275,0.476,0.249 0|0:0:1,0,0 0|1:1.114:0.193,0.5,0.307 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.442:0.083,0.392,0.525 0|0:0:1,0,0 1|1:1.448:0.081,0.39,0.529 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.421:0.091,0.396,0.513 1|1:1.338:0.114,0.434,0.452 1|1:1.279:0.124,0.474,0.403 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.224:0.143,0.491,0.367 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.338:0.089,0.485,0.426 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.304:0.118,0.461,0.422 1|1:2:0,0,1 0|1:1.361:0.106,0.427,0.467 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.012,0.202,0.786 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.797:0.011,0.182,0.808 0|0:0.451:0.612,0.325,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.441:0.082,0.395,0.523 0|0:0:1,0,0 1|0:1.4:0.097,0.406,0.497 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.947:0.318,0.417,0.265 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.479:0.075,0.371,0.554 1|0:1.335:0.113,0.438,0.448 1|0:1.261:0.144,0.451,0.405 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.599:0.498,0.404,0.097 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.925:0.002,0.071,0.927 0|0:0:1,0,0 1|1:1.961:0.001,0.038,0.962 +3 19127791 SNP-3.19126550. A G . PASS AR2=0.97;DR2=0.983;AF=0.232 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.895:0.004,0.097,0.899 0|1:1.356:0.104,0.435,0.46 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.476:0.076,0.372,0.552 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.358:0.104,0.434,0.462 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.382:0.095,0.427,0.477 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.358:0.104,0.433,0.463 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.428:0.077,0.418,0.505 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0.001,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19127952 SNP-3.19126711. A G . PASS AR2=0.995;DR2=0.996;AF=0.208 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.385:0.629,0.358,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.713,0.271,0.016 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19128108 SNP-3.19126867. C A . PASS AR2=0.988;DR2=0.99;AF=0.425 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0.183:0.825,0.168,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.861,0.134,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.201:0.81,0.18,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.895,0.104,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.107,0.003 0|0:0.341:0.688,0.283,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.493:0.094,0.32,0.586 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.075:0.927,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.095:0.907,0.091,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.849,0.144,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.874,0.12,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.862,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.09:0.913,0.085,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19128197 SNP-3.19126956. C A . PASS AR2=0.96;DR2=0.971;AF=0.304 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.747:0.254,0.745,0.001 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0.001,0.025,0.974 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.272:0.142,0.444,0.414 1|1:2:0,0,1 0|0:0.126:0.89,0.095,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.361:0.093,0.453,0.454 0|0:0:1,0,0 1|0:0.723:0.281,0.716,0.003 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:1.916:0.002,0.079,0.918 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.42:0.031,0.518,0.451 1|1:2:0,0,1 0|1:1.181:0.116,0.586,0.297 1|1:2:0,0,1 1|1:1.827:0.011,0.15,0.839 1|0:0.763:0.237,0.763,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.443:0.056,0.444,0.499 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.72:0.442,0.396,0.162 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.008,0.173,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.088:0.216,0.481,0.304 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.358:0.644,0.354,0.002 0|0:0:1,0,0 1|1:1.697:0.025,0.254,0.722 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.871:0.157,0.815,0.028 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.881:0.005,0.11,0.885 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.775:0.041,0.143,0.816 0|1:1.376:0.13,0.363,0.507 1|1:2:0,0,1 1|1:1.928:0.002,0.068,0.93 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 +3 19128237 SNP-3.19126996. C A . PASS AR2=0.948;DR2=0.962;AF=0.415 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.733:0.297,0.673,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.533:0.581,0.305,0.114 0|0:0.418:0.615,0.351,0.033 0|0:0.032:0.969,0.029,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.136:0.868,0.128,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.882,0.112,0.006 0|0:0.422:0.611,0.356,0.033 0|0:0.042:0.958,0.041,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.15:0.857,0.137,0.007 0|0:0:1,0,0 0|0:0.099:0.902,0.096,0.002 0|1:1:0,1,0 0|0:0.431:0.632,0.305,0.063 0|0:0.085:0.918,0.08,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.004,0.104,0.892 0|0:0:1,0,0 1|0:1.064:0.037,0.862,0.101 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.01,0.156,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.901:0.345,0.41,0.246 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.137:0.87,0.123,0.007 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.743,0.235,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.813,0.181,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.157:0.847,0.148,0.004 0|0:0.031:0.97,0.029,0.001 0|0:0:1,0,0 1|0:0.999:0.01,0.981,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.067:0.934,0.065,0.001 0|0:0.096:0.908,0.088,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.003 0|0:0:1,0,0 0|0:0.369:0.677,0.276,0.046 0|1:0.524:0.545,0.386,0.069 0|0:0.521:0.547,0.385,0.068 0|0:0.521:0.547,0.384,0.068 0|0:0.021:0.979,0.02,0 0|1:0.521:0.547,0.384,0.068 0|0:0.176:0.826,0.172,0.002 0|0:0.525:0.544,0.387,0.069 0|0:0:1,0,0 0|0:0.521:0.547,0.385,0.068 0|0:0:1,0,0 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 0|1:0.521:0.547,0.385,0.068 0|0:0:1,0,0 0|0:0.518:0.549,0.383,0.068 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.105:0.898,0.099,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 +3 19128315 SNP-3.19127074. C A . PASS AR2=0.996;DR2=0.997;AF=0.201 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.522:0.067,0.344,0.589 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19129577 SNP-3.19128336. C A . PASS AR2=0.963;DR2=0.97;AF=0.416 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.82:0.339,0.502,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.506:0.597,0.299,0.103 0|1:0.72:0.352,0.576,0.072 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.042,0.159,0.8 0|0:0.091:0.912,0.086,0.002 0|0:0.062:0.939,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0.072:0.93,0.069,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.754:0.39,0.467,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.843:0.339,0.478,0.183 0|1:0.78:0.375,0.47,0.155 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0.753:0.394,0.459,0.147 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0.12:0.885,0.111,0.004 0|0:0.118:0.887,0.108,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.347:0.72,0.213,0.067 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.6:0,0.4,0.6 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.051:0.95,0.05,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.967,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.067:0.933,0.067,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.895,0.099,0.005 1|1:2:0,0,1 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.672:0.438,0.451,0.11 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.979:0.253,0.514,0.233 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.929,0.069,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.248:0.172,0.409,0.42 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.396:0.675,0.254,0.071 1|1:2:0,0,1 0|0:0:1,0,0 +3 19129604 SNP-3.19128363. C A . PASS AR2=0.984;DR2=0.989;AF=0.494 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:0.767:0.373,0.488,0.139 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.006:0,0.994,0.006 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.548:0.527,0.397,0.075 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.547:0.528,0.397,0.075 0|1:0.548:0.528,0.397,0.075 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.554:0.523,0.4,0.077 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.018:0.257,0.468,0.275 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19129676 SNP-3.19128435. A G . PASS AR2=0.991;DR2=0.992;AF=0.263 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.888,0.109,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.699:0,0.301,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.888,0.109,0.003 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.116:0.887,0.109,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19130100 SNP-3.19128859. A G . PASS AR2=0.993;DR2=0.994;AF=0.265 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.209:0.794,0.202,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.07:0.002,0.926,0.072 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.363:0.643,0.351,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.301:0.722,0.255,0.023 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.845,0.147,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19130299 SNP-3.19129058. A G . PASS AR2=0.999;DR2=0.999;AF=0.245 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.042,0.957 1|1:1.944:0.001,0.055,0.945 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.981:0.019,0.981,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.954 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19133639 SNP-3.19132398. A G . PASS AR2=0.993;DR2=0.993;AF=0.518 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.002,0.074,0.925 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:1.773:0.014,0.198,0.787 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.875:0.004,0.118,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.002,0.22,0.778 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0.005:0.995,0.005,0 1|1:1.957:0.001,0.042,0.957 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0,0.239,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 1|1:1.927:0.002,0.069,0.929 1|1:1.908:0.003,0.087,0.91 0|0:0:1,0,0 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:1.964:0.001,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.911:0.002,0.084,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19136653 SNP-3.19135412. C A . PASS AR2=0.986;DR2=0.989;AF=0.371 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.773,0.203,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.234:0.789,0.187,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.301:0.727,0.245,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.38:0,0.62,0.38 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.058:0.942,0.058,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.137:0.875,0.114,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.234:0.789,0.188,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.404:0.653,0.29,0.057 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.301:0.729,0.24,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.789,0.187,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.269:0.755,0.222,0.023 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19136855 SNP-3.19135614. A G . PASS AR2=0.998;DR2=0.998;AF=0.266 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.658:0,0.342,0.658 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19137832 SNP-3.19136591. A G . PASS AR2=0.994;DR2=0.995;AF=0.223 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.427:0.586,0.4,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.818:0.211,0.76,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.682,0.31,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19138983 SNP-3.19137742. A G . PASS AR2=0.987;DR2=0.99;AF=0.322 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.063:0.938,0.06,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.485:0.588,0.339,0.073 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.85,0.144,0.006 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.143:0.863,0.132,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.113:0.891,0.106,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.102:0.901,0.097,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.101,0.003 0|0:0.163:0.844,0.149,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.872,0.128,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.915,0.083,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.173:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.397:0.619,0.365,0.016 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.115:0.889,0.108,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19139036 SNP-3.19137795. A G . PASS AR2=0.825;DR2=0.865;AF=0.282 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.87,0.125,0.005 0|1:1.115:0.198,0.489,0.313 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.099:0.205,0.49,0.304 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.463:0.6,0.338,0.063 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.251:0.144,0.461,0.395 0|1:1.33:0.116,0.437,0.447 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.091:0.209,0.491,0.3 0|1:1.085:0.212,0.492,0.297 0|1:1.1:0.205,0.49,0.305 1|1:2:0,0,1 1|0:0.642:0.402,0.554,0.044 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.78,0.204,0.017 0|0:0:1,0,0 0|0:0.164:0.845,0.145,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.62:0.479,0.423,0.099 1|1:2:0,0,1 1|0:1.193:0.165,0.478,0.357 0|0:0:1,0,0 1|0:1.245:0.153,0.449,0.398 1|0:1.111:0.179,0.53,0.291 0|1:0.608:0.479,0.433,0.087 1|0:1.148:0.154,0.544,0.302 0|0:0.463:0.59,0.356,0.053 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.666:0.459,0.416,0.125 1|0:0.816:0.356,0.472,0.172 1|1:2:0,0,1 1|1:1.576:0.046,0.332,0.622 0|0:0.11:0.894,0.101,0.004 1|1:1.539:0.054,0.353,0.593 0|1:0.621:0.477,0.424,0.098 0|0:0.786:0.372,0.471,0.157 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.44:0.085,0.391,0.524 0|0:0:1,0,0 1|0:1.113:0.2,0.486,0.314 0|0:0.557:0.525,0.393,0.082 1|0:0.991:0.246,0.517,0.237 1|0:1.055:0.217,0.512,0.271 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.664:0.043,0.25,0.707 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.234:0.164,0.438,0.398 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.492:0.533,0.443,0.024 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.308:0.124,0.444,0.432 1|0:1.282:0.15,0.418,0.432 0|0:0:1,0,0 0|0:0.463:0.603,0.332,0.065 1|1:2:0,0,1 0|1:1.115:0.198,0.489,0.313 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.636:0.468,0.428,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.095:0.207,0.491,0.302 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.095:0.207,0.491,0.302 0|0:0:1,0,0 1|1:1.094:0.208,0.491,0.302 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.343:0.111,0.436,0.454 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.936:0.227,0.61,0.163 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:1.216:0.142,0.501,0.358 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.38:0.101,0.418,0.481 1|1:1.526:0.067,0.34,0.593 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.301:0.124,0.45,0.426 0|1:1.095:0.207,0.491,0.302 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.396:0.094,0.416,0.49 1|1:2:0,0,1 1|1:1.263:0.145,0.448,0.408 0|0:0:1,0,0 1|1:1.095:0.207,0.491,0.302 0|1:0.758:0.386,0.471,0.143 1|0:0.906:0.301,0.493,0.207 0|0:0.107:0.896,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.208:0.093,0.606,0.301 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.351:0.691,0.267,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.884,0.115,0.001 1|0:0.673:0.443,0.442,0.116 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.161:0.062,0.714,0.224 +3 19139491 SNP-3.19138250. A G . PASS AR2=0.982;DR2=0.987;AF=0.323 GT:DS:GP 1|1:1.233:0.162,0.444,0.394 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.502:0.066,0.367,0.567 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.302:0.179,0.341,0.481 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.064:0.197,0.542,0.261 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.868:0.009,0.115,0.877 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.463:0.065,0.407,0.528 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.382:0.675,0.269,0.057 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19142199 SNP-3.19140958. C A . PASS AR2=0.998;DR2=0.998;AF=0.376 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.156:0.851,0.142,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.141:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19142346 SNP-3.19141105. C A . PASS AR2=0.996;DR2=0.997;AF=0.494 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.576:0.451,0.521,0.028 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.131:0.874,0.121,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19142467 SNP-3.19141226. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19142663 SNP-3.19141422. A G . PASS AR2=0.99;DR2=0.991;AF=0.502 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.002,0.074,0.924 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.912:0.002,0.085,0.914 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.007,0.148,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.004,0.107,0.889 1|0:0.919:0.081,0.918,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.213:0.788,0.21,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.007,0.145,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.861:0.005,0.13,0.866 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.897:0.004,0.096,0.9 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.085,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.004,0.107,0.889 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.008,0.155,0.837 1|1:1.86:0.005,0.13,0.865 1|1:1.888:0.004,0.104,0.892 0|0:0:1,0,0 1|1:1.83:0.008,0.155,0.837 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.076,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.863:0.004,0.128,0.868 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.076,0.922 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 +3 19144676 SNP-3.19143435. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19145269 SNP-3.19144028. C A . PASS AR2=0.99;DR2=0.995;AF=0.438 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.326:0.117,0.44,0.443 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.305:0.154,0.388,0.459 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.827,0.169,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.202:0,0.798,0.202 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19145523 SNP-3.19144282. A G . PASS AR2=0.993;DR2=0.994;AF=0.521 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.002,0.084,0.914 1|0:1:0,1,0 1|1:1.939:0.001,0.059,0.94 1|1:1.785:0.008,0.199,0.793 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.912:0.002,0.084,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.086,0.912 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.118:0.058,0.766,0.176 1|1:1.961:0,0.038,0.962 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.05,0.949 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.892:0.003,0.103,0.895 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.003,0.107,0.89 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.001,0.045,0.955 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0.001,0.077,0.921 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19146331 SNP-3.19145090. C A . PASS AR2=0.994;DR2=0.995;AF=0.399 GT:DS:GP 0|0:0.078:0.923,0.075,0.002 1|1:2:0,0,1 0|0:0.231:0.782,0.204,0.013 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.248:0.767,0.217,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.873,0.122,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.211:0.801,0.188,0.012 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.119:0.885,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19149086 SNP-3.19147845. A G . PASS AR2=0.993;DR2=0.994;AF=0.241 GT:DS:GP 1|1:1.956:0,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 0|1:1.381:0.012,0.595,0.393 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.824:0.009,0.157,0.834 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.937:0,0.063,0.937 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.002,0.069,0.93 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 +3 19149479 SNP-3.19148238. C A . PASS AR2=0.976;DR2=0.981;AF=0.305 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.705:0.019,0.257,0.724 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.103:0.145,0.607,0.248 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.721:0.016,0.247,0.737 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.622:0.036,0.307,0.658 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.732:0.014,0.239,0.746 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.032,0.285,0.683 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.983,0.017,0 0|0:0.402:0.652,0.295,0.054 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.576:0.042,0.339,0.619 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.721:0.027,0.226,0.747 0|1:1:0,1,0 1|1:1.556:0.071,0.303,0.627 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.004,0.073,0.923 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.683:0.039,0.239,0.722 0|1:1:0,1,0 0|0:0.015:0.985,0.015,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19149706 SNP-3.19148465. C A . PASS AR2=0.947;DR2=0.96;AF=0.432 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.41:0.633,0.323,0.043 1|1:2:0,0,1 0|0:0.417:0.628,0.327,0.045 0|1:1:0,1,0 0|0:0.344:0.685,0.286,0.029 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.395:0.644,0.317,0.039 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.262:0.755,0.228,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.41:0.634,0.322,0.044 0|0:0.314:0.708,0.27,0.022 0|0:0.395:0.644,0.317,0.039 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.412:0.632,0.323,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.807,0.182,0.01 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.328:0.701,0.27,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0.001,0.998,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.356:0.677,0.291,0.033 0|0:0:1,0,0 0|0:0.354:0.679,0.289,0.032 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.388:0.649,0.314,0.037 1|1:1.987:0,0.013,0.987 0|0:0.353:0.679,0.289,0.032 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.417:0.628,0.327,0.045 0|0:0.369:0.666,0.3,0.034 0|0:0:1,0,0 0|0:0.293:0.73,0.247,0.023 0|0:0.412:0.632,0.324,0.044 0|0:0:1,0,0 1|0:0.731:0.403,0.463,0.134 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.38:0.658,0.304,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.367:0.671,0.292,0.037 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.829,0.157,0.014 0|0:0.364:0.67,0.297,0.034 0|0:0.335:0.693,0.28,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.82,0.171,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.68:0.436,0.447,0.116 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.341:0.689,0.282,0.03 0|1:0.458:0.594,0.354,0.052 0|0:0.219:0.793,0.195,0.012 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19151296 SNP-3.19150055. C A . PASS AR2=0.99;DR2=0.992;AF=0.322 GT:DS:GP 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.863:0.005,0.128,0.868 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.745:0.016,0.222,0.761 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.738:0.013,0.236,0.751 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.737:0.018,0.227,0.755 1|1:2:0,0,1 1|1:1.749:0.014,0.223,0.763 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.007,0.162,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.009,0.159,0.832 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.013,0.203,0.784 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19156140 SNP-3.19154899. A G . PASS AR2=0.995;DR2=0.995;AF=0.514 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.238:0.059,0.645,0.296 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.906:0.003,0.089,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.002,0.091,0.907 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.006,0.136,0.857 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.002,0.072,0.926 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.865:0.006,0.124,0.87 1|1:1.867:0.005,0.122,0.873 1|1:2:0,0,1 1|1:1.867:0.005,0.123,0.872 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19158048 SNP-3.19156807. C A . PASS AR2=0.911;DR2=0.935;AF=0.263 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.852:0.316,0.516,0.168 1|0:1.27:0.135,0.46,0.405 1|1:1.573:0.047,0.333,0.62 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.681:0.027,0.266,0.707 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1.363:0.106,0.425,0.469 1|1:1.991:0,0.009,0.991 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.924:0.207,0.662,0.131 1|1:1.991:0,0.008,0.991 0|0:0:1,0,0 1|1:1.652:0.034,0.279,0.687 0|0:0:1,0,0 1|0:1.169:0.166,0.499,0.335 0|1:1.175:0.079,0.667,0.254 0|0:1.211:0.155,0.478,0.366 0|0:0.326:0.709,0.257,0.035 1|1:2:0,0,1 1|0:1.084:0.228,0.459,0.312 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.519:0.057,0.366,0.577 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.423:0.084,0.408,0.507 0|1:0.878:0.255,0.612,0.133 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.458:0.073,0.396,0.531 1|0:1.522:0.057,0.365,0.578 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.549:0.05,0.35,0.599 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.489:0.067,0.378,0.555 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.366:0.1,0.433,0.466 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0.016,0.216,0.768 1|1:2:0,0,1 1|1:1.912:0.004,0.081,0.916 1|1:2:0,0,1 1|1:1.446:0.075,0.404,0.521 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.481:0.069,0.381,0.55 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.488:0.067,0.377,0.556 0|0:0:1,0,0 1|1:1.41:0.091,0.408,0.501 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.84:0.015,0.13,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.429:0.084,0.402,0.514 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.39:0.093,0.424,0.483 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.382:0.655,0.308,0.037 1|1:1.555:0.045,0.356,0.599 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.344:0.081,0.494,0.425 0|0:0:1,0,0 +3 19158432 SNP-3.19157191. C A . PASS AR2=0.974;DR2=0.981;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.749:0.017,0.218,0.765 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.577:0.032,0.359,0.609 0|1:1:0,1,0 1|1:1.69:0.023,0.264,0.713 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.334:0.151,0.365,0.484 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.768:0.014,0.205,0.781 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.367:0.643,0.347,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.769:0.014,0.203,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.592:0.014,0.38,0.606 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.005,0.126,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.219:0.162,0.458,0.38 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.296:0.127,0.449,0.423 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.012,0.174,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.616:0.028,0.328,0.644 0|0:0:1,0,0 +3 19165258 SNP-3.19164017. A G . PASS AR2=0.985;DR2=0.99;AF=0.498 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0.001,0.036,0.963 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.544:0.029,0.397,0.574 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.834:0.003,0.159,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1.45:0.077,0.396,0.527 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.616:0.038,0.307,0.655 1|1:1.849:0.003,0.145,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.589:0.045,0.321,0.634 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.494:0.058,0.39,0.552 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.539:0.048,0.365,0.587 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19165316 SNP-3.19164075. C A . PASS AR2=0.966;DR2=0.973;AF=0.416 GT:DS:GP 0|0:0.114:0.889,0.108,0.003 1|1:2:0,0,1 0|0:0.308:0.715,0.261,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.012,0.109,0.879 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.326:0.71,0.253,0.037 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.687,0.278,0.035 0|0:0:1,0,0 0|0:0.429:0.613,0.346,0.042 0|0:0.301:0.722,0.255,0.023 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.303:0.72,0.257,0.023 0|0:0.302:0.721,0.256,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.754:0.372,0.502,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.38:0.659,0.303,0.039 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0.114:0.889,0.107,0.003 0|0:0.144:0.862,0.132,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.001,0.068,0.931 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 1|1:1.758:0.011,0.221,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.871,0.127,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 0|0:0.281:0.731,0.258,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.809,0.177,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.463:0.607,0.322,0.07 0|0:0.3:0.722,0.255,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.115:0.888,0.109,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.924:0.001,0.075,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.884,0.113,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.297:0.725,0.253,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 19169014 SNP-3.19167773. A G . PASS AR2=0.918;DR2=0.937;AF=0.447 GT:DS:GP 1|1:1.676:0.028,0.269,0.704 0|0:0:1,0,0 0|1:1.724:0.021,0.233,0.745 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.001,0.102,0.897 1|1:1.735:0.017,0.231,0.752 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.639:0.027,0.307,0.666 0|0:0:1,0,0 1|1:1.59:0.043,0.325,0.633 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.384:0.077,0.462,0.461 1|1:1.608:0.038,0.316,0.646 0|0:0:1,0,0 1|1:1.706:0.026,0.242,0.732 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.793:0.011,0.185,0.804 1|1:2:0,0,1 1|0:1.335:0.118,0.429,0.453 1|1:2:0,0,1 1|1:1.732:0.017,0.233,0.749 0|0:0:1,0,0 1|1:1.742:0.016,0.225,0.759 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.594:0.042,0.323,0.635 1|1:1.936:0,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.665:0.028,0.278,0.693 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.591:0.042,0.325,0.633 1|1:2:0,0,1 1|1:1.59:0.042,0.325,0.633 0|0:0:1,0,0 1|1:1.589:0.043,0.326,0.631 0|1:1.58:0.044,0.332,0.624 1|1:1.665:0.028,0.279,0.693 0|0:0.032:0.969,0.03,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.669:0.031,0.269,0.7 1|0:1:0,1,0 1|1:1.954:0,0.045,0.955 1|1:1.587:0.043,0.327,0.63 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.639:0.032,0.298,0.671 1|1:2:0,0,1 1|1:1.668:0.031,0.27,0.699 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.587:0.043,0.327,0.63 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.678:0.023,0.276,0.701 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.665:0.031,0.274,0.695 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.796:0.204,0.796,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.486:0.098,0.318,0.584 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.029,0.272,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.315:0.121,0.444,0.435 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.594:0.045,0.317,0.639 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.617:0.036,0.311,0.653 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.628:0.034,0.304,0.662 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.658:0.031,0.28,0.689 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.021,0.251,0.727 1|1:2:0,0,1 0|1:1.56:0.048,0.344,0.608 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.589:0.043,0.326,0.631 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.59:0.042,0.325,0.632 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.427:0.078,0.417,0.505 1|1:1.728:0.022,0.229,0.749 1|1:1.713:0.022,0.242,0.735 0|0:0:1,0,0 1|1:1.627:0.037,0.299,0.664 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.673:0.031,0.265,0.704 1|1:1.946:0.001,0.052,0.947 1|1:1.937:0.002,0.06,0.939 1|1:2:0,0,1 1|1:1.614:0.037,0.313,0.651 1|1:1.711:0.023,0.244,0.734 1|1:1.659:0.03,0.28,0.689 1|1:2:0,0,1 1|1:1.591:0.042,0.324,0.633 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.667:0.031,0.271,0.698 +3 19172308 SNP-3.19171067. A G . PASS AR2=0.982;DR2=0.984;AF=0.259 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0.172:0.836,0.157,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.861:0.005,0.129,0.866 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.872:0.004,0.119,0.877 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.856:0.006,0.132,0.862 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.004,0.12,0.876 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.847:0.005,0.142,0.852 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.902:0.003,0.091,0.905 1|1:1.687:0.012,0.288,0.699 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.885,0.112,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.881:0.004,0.112,0.885 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.901:0.003,0.093,0.904 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.916:0.002,0.08,0.918 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.896,0.101,0.003 0|0:0.131:0.873,0.123,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.934:0.002,0.062,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.004,0.118,0.877 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.084,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.873,0.122,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.842:0.007,0.144,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.9:0.003,0.094,0.903 +3 19177904 SNP-3.19176663. A G . PASS AR2=0.891;DR2=0.922;AF=0.392 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.505:0.061,0.373,0.566 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0 1|1:2:0,0,1 0|1:1.19:0.143,0.523,0.334 1|1:1.315:0.122,0.441,0.437 1|1:2:0,0,1 0|1:0.904:0.312,0.472,0.216 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.648:0.033,0.287,0.68 0|0:0:1,0,0 1|1:1.443:0.069,0.419,0.512 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.602:0.04,0.318,0.642 0|1:1.082:0.213,0.491,0.296 1|1:1.554:0.045,0.355,0.599 1|1:1.41:0.083,0.424,0.493 1|1:2:0,0,1 1|1:1.234:0.15,0.466,0.384 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.353:0.108,0.431,0.461 1|1:1.562:0.048,0.343,0.609 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.574:0.048,0.329,0.623 1|1:2:0,0,1 1|1:1.598:0.044,0.314,0.642 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.25:0.15,0.45,0.4 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.575:0.044,0.337,0.619 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.022,0.23,0.747 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0.023,0.252,0.725 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.835,0.16,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.706:0.302,0.689,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0.115:0.889,0.106,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.595:0.045,0.316,0.639 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.55:0.052,0.345,0.603 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.59:0.043,0.325,0.632 1|1:1.583:0.041,0.335,0.624 1|0:1.39:0.094,0.422,0.484 0|0:0:1,0,0 0|1:1.341:0.114,0.432,0.454 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.648:0.033,0.287,0.68 1|1:1.614:0.037,0.311,0.652 1|0:1.374:0.088,0.45,0.462 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.333:0.122,0.422,0.456 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.531:0.055,0.358,0.586 1|1:1.628:0.042,0.288,0.67 1|1:2:0,0,1 1|1:1.72:0.025,0.23,0.745 0|0:0:1,0,0 0|0:0.051:0.952,0.045,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.539:0.055,0.352,0.594 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.524:0.061,0.353,0.585 1|1:1.639:0.034,0.293,0.673 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.338:0.114,0.433,0.452 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.338:0.114,0.433,0.453 1|1:2:0,0,1 1|1:1.332:0.116,0.436,0.448 0|0:0:1,0,0 1|1:1.338:0.114,0.433,0.453 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.216:0.176,0.433,0.391 0|1:1.336:0.115,0.435,0.451 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.648:0.033,0.287,0.681 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.357:0.114,0.414,0.471 0|0:0:1,0,0 1|1:1.339:0.113,0.434,0.453 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19178113 SNP-3.19176872. C A . PASS AR2=0.985;DR2=0.989;AF=0.263 GT:DS:GP 1|1:1.405:0.136,0.323,0.541 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.707:0.294,0.706,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.598:0.046,0.31,0.644 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.148:0.852,0.148,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.125:0.88,0.115,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.749:0.039,0.173,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.735:0.343,0.579,0.078 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19178400 SNP-3.19177159. C A . PASS AR2=0.986;DR2=0.988;AF=0.428 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.009,0.114,0.877 1|1:1.835:0.006,0.153,0.841 1|1:1.772:0.004,0.219,0.777 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.858:0.003,0.136,0.861 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.082,0.001 0|0:0.006:0.994,0.006,0 1|1:1.908:0.006,0.081,0.914 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.009,0.156,0.836 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 1|1:1.799:0.011,0.179,0.81 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.007,0.175,0.818 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 1|0:0.834:0.178,0.81,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.006,0.162,0.831 1|1:1.715:0.005,0.274,0.72 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.952:0.002,0.044,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.009,0.173,0.819 1|1:1.84:0.006,0.149,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.957,0.043,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0.001,0.036,0.963 1|1:1.856:0.006,0.132,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.006,0.142,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.005,0.117,0.878 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.006,0.131,0.864 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19178485 SNP-3.19177244. C A . PASS AR2=0.991;DR2=0.993;AF=0.286 GT:DS:GP 1|1:1.538:0.077,0.309,0.614 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.001:0,0.999,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.076:0.926,0.073,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.063:0.007,0.922,0.071 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.921:0.094,0.892,0.014 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.872,0.123,0.005 1|0:1.112:0,0.888,0.112 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.912:0.102,0.884,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.885,0.108,0.007 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19178506 SNP-3.19177265. C A . PASS AR2=0.996;DR2=0.996;AF=0.278 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.731:0.012,0.244,0.744 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.069:0.007,0.917,0.076 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.901:0.114,0.872,0.014 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.131:0.874,0.121,0.005 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.884:0.129,0.858,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.966:0.034,0.966,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19181841 SNP-3.19180600. C A . PASS AR2=0.967;DR2=0.975;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.004,0.064,0.932 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:0.984:0.256,0.503,0.24 1|1:2:0,0,1 0|0:0.614:0.425,0.536,0.039 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.002,0.043,0.954 1|1:2:0,0,1 1|1:1.803:0.005,0.188,0.807 1|1:2:0,0,1 1|1:1.442:0.039,0.479,0.482 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.009,0.175,0.815 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.914:0.002,0.082,0.916 1|0:1.005:0.071,0.853,0.076 1|1:1.964:0.001,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.582:0.012,0.395,0.594 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.892:0.386,0.336,0.278 1|0:1.156:0.144,0.557,0.3 1|1:1.544:0.033,0.391,0.577 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.008,0.14,0.851 1|1:2:0,0,1 1|1:1.744:0.015,0.225,0.76 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0.001,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.004,0.062,0.934 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.043:0.244,0.47,0.287 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.001,0.128,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.897:0.002,0.099,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0,0.041,0.958 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.003,0.073,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.017,0.343,0.639 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19181864 SNP-3.19180623. A G . PASS AR2=0.954;DR2=0.967;AF=0.471 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.77:0.001,0.227,0.771 1|1:1.605:0.04,0.315,0.645 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.574:0.044,0.338,0.618 1|0:1.376:0.089,0.446,0.465 1|1:1.752:0.018,0.213,0.77 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.486:0.067,0.379,0.553 1|1:1.528:0.049,0.375,0.576 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.537:0.055,0.353,0.592 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.593:0.042,0.323,0.635 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0,0.07,0.93 1|1:1.722:0.01,0.257,0.732 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.859:0.002,0.137,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.945 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 1|1:1.955:0.001,0.044,0.956 1|1:1.815:0.009,0.167,0.824 1|0:1.302:0.017,0.664,0.319 1|1:2:0,0,1 1|1:1.777:0.006,0.211,0.783 1|1:1.917:0.001,0.081,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.953 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.593:0.041,0.325,0.634 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.557:0.052,0.339,0.609 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.043,0.3,0.657 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.431:0.078,0.414,0.508 1|1:2:0,0,1 1|1:1.568:0.046,0.341,0.614 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.614:0.041,0.303,0.656 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.948 0|1:1.623:0.037,0.304,0.66 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.603:0.04,0.317,0.643 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.476:0.071,0.382,0.547 0|0:0:1,0,0 1|1:1.939:0,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19193977 SNP-3.19192736. C A . PASS AR2=0.977;DR2=0.983;AF=0.381 GT:DS:GP 0|0:0.13:0.874,0.121,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.847,0.143,0.01 0|0:0.133:0.871,0.125,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.106:0.897,0.101,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.001,0.28,0.719 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|0:1.093:0.004,0.9,0.097 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.818:0.415,0.353,0.233 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.106:0.898,0.099,0.003 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.56:0.018,0.404,0.578 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.347:0.665,0.323,0.012 0|0:0.002:0.998,0.002,0 0|0:0.122:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.104:0.899,0.098,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.893,0.105,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.877,0.117,0.006 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.106:0.897,0.101,0.003 0|0:0.11:0.894,0.102,0.004 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.121:0.883,0.114,0.003 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.25:0.765,0.22,0.015 1|1:2:0,0,1 0|0:0.121:0.883,0.113,0.004 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.052:0.952,0.045,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.12:0.883,0.114,0.003 0|0:0:1,0,0 0|0:0.105:0.898,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19194196 SNP-3.19192955. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19194737 SNP-3.19193496. C A . PASS AR2=1;DR2=1;AF=0.465 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19198829 SNP-3.19197588. A G . PASS AR2=0.999;DR2=0.999;AF=0.209 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.941,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19204549 SNP-3.19203308. C A . PASS AR2=0.997;DR2=0.998;AF=0.345 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.6:0.034,0.332,0.634 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.042,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19207080 SNP-3.19205839. C A . PASS AR2=0.992;DR2=0.994;AF=0.427 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0,0.04,0.96 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.9:0.004,0.093,0.903 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.002,0.096,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.002,0.132,0.866 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.831:0.005,0.159,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0,0.038,0.962 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.958:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.008,0.145,0.847 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 1|1:1.854:0.009,0.128,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.45:0.073,0.404,0.523 1|1:2:0,0,1 0|0:0:1,0,0 +3 19207198 SNP-3.19205957. A G . PASS AR2=0.964;DR2=0.972;AF=0.498 GT:DS:GP 1|1:1.822:0.008,0.162,0.83 0|0:0:1,0,0 1|1:1.826:0.009,0.155,0.836 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.859:0.005,0.131,0.864 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.004,0.094,0.902 0|0:0:1,0,0 1|1:1.839:0.007,0.147,0.846 1|1:1.864:0.006,0.125,0.87 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.843:0.006,0.146,0.848 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.012,0.25,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.011,0.168,0.821 1|1:1.857:0.006,0.132,0.863 1|1:1.819:0.009,0.163,0.828 1|1:2:0,0,1 1|1:1.823:0.008,0.161,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.01,0.248,0.742 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.865:0.004,0.126,0.869 1|1:1.821:0.008,0.162,0.829 1|1:2:0,0,1 1|1:1.804:0.01,0.176,0.814 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.565:0.016,0.404,0.58 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.008,0.178,0.814 1|0:1.219:0.059,0.662,0.279 1|1:1.783:0.012,0.194,0.794 1|1:1.674:0.02,0.285,0.694 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.006,0.137,0.857 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.337:0.045,0.573,0.382 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.005,0.137,0.857 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.008,0.16,0.832 1|1:2:0,0,1 1|1:1.855:0.008,0.13,0.863 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.868:0.005,0.122,0.873 1|1:1.837:0.006,0.151,0.843 1|1:1.822:0.008,0.162,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.736:0.545,0.173,0.282 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.851:0.006,0.137,0.857 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.428:0.616,0.341,0.044 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.005,0.137,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.005,0.12,0.875 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.006,0.152,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19207283 SNP-3.19206042. C A . PASS AR2=1;DR2=1;AF=0.463 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19207843 SNP-3.19206602. C A . PASS AR2=0.965;DR2=0.973;AF=0.318 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.794:0.013,0.181,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.671:0.035,0.258,0.706 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.592:0.416,0.577,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.416:0.093,0.399,0.509 1|1:1.736:0.017,0.229,0.754 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.75:0.016,0.218,0.766 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.014,0.261,0.725 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.641:0.034,0.291,0.675 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.604:0.034,0.328,0.638 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.673:0.029,0.268,0.702 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.629:0.028,0.315,0.657 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.803:0.014,0.168,0.817 1|1:2:0,0,1 1|1:1.908:0.004,0.084,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.008,0.153,0.839 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.017,0.217,0.766 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.798:0.01,0.181,0.809 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.508:0.073,0.347,0.58 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.808:0.01,0.173,0.817 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.014,0.257,0.728 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.509:0.062,0.367,0.571 1|1:1.822:0.018,0.143,0.84 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.007,0.132,0.861 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.716:0.023,0.239,0.738 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19210587 SNP-3.19209346. A G . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19213861 SNP-3.19212620. A G . PASS AR2=0.99;DR2=0.992;AF=0.488 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.852:0.003,0.142,0.855 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.559:0.063,0.314,0.622 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.003,0.122,0.875 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.062,0.938 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.917:0.002,0.08,0.919 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.798:0.008,0.185,0.807 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.016,0.206,0.777 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.817:0.005,0.172,0.823 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.008,0.159,0.833 1|1:1.933:0.001,0.064,0.935 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.097,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.003,0.149,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19214991 SNP-3.19213750. A G . PASS AR2=0.97;DR2=0.977;AF=0.224 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0.075:0.925,0.074,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.763:0.014,0.208,0.778 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.691:0.026,0.258,0.716 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.39:0.065,0.48,0.455 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.733:0.017,0.233,0.75 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.658:0.027,0.288,0.685 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.884:0.14,0.837,0.024 0|1:1:0,1,0 1|1:1.748:0.013,0.226,0.761 1|0:1.356:0.079,0.486,0.435 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 1|1:1.817:0.01,0.163,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.564:0.443,0.551,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.847,0.147,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.718:0.02,0.241,0.739 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.008,0.135,0.858 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.582:0.053,0.312,0.635 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19217756 SNP-3.19216515. C A . PASS AR2=0.987;DR2=0.989;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0.001 0|0:0.111:0.892,0.104,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.101:0.902,0.096,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.705,0.289,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.745,0.242,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.06,0.001 0|1:1:0,1,0 0|0:0.185:0.82,0.175,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.763:0.243,0.751,0.006 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.754:0.251,0.744,0.005 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.874,0.118,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.099:0.903,0.095,0.002 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0.182:0.821,0.177,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.079,0.001 0|0:0:1,0,0 0|0:0.339:0.662,0.338,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.055:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19217918 SNP-3.19216677. C A . PASS AR2=0.971;DR2=0.977;AF=0.346 GT:DS:GP 0|0:0.107:0.897,0.098,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.884:0.003,0.109,0.887 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.015,0.17,0.816 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.092:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.852,0.142,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.094,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 1|1:1.687:0.027,0.26,0.713 1|1:2:0,0,1 1|1:1.517:0.057,0.369,0.574 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.92:0.001,0.077,0.922 1|1:2:0,0,1 1|1:1.702:0.014,0.271,0.715 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.55:0.046,0.359,0.595 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.485:0.058,0.398,0.544 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.696:0.024,0.255,0.721 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.897:0.002,0.099,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.747:0.01,0.234,0.757 1|1:1.925:0.002,0.072,0.926 0|0:0:1,0,0 1|1:1.796:0.013,0.179,0.808 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.004,0.108,0.888 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.884:0.003,0.111,0.886 1|1:1.904:0.002,0.092,0.906 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.001,0.045,0.954 1|1:1.881:0.003,0.112,0.884 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.892:0.003,0.102,0.895 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.022,0.286,0.692 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.935,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.895:0.003,0.098,0.898 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.874,0.119,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.003,0.096,0.901 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.939:0.001,0.058,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.008,0.165,0.826 1|1:1.694:0.007,0.292,0.701 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19218405 SNP-3.19217164. C A . PASS AR2=0.977;DR2=0.982;AF=0.326 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.002,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.89:0.003,0.103,0.894 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.261:0.12,0.5,0.38 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.252:0.114,0.52,0.366 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.525:0.054,0.367,0.579 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.956:0.001,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.483:0.063,0.391,0.546 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.721:0.015,0.249,0.736 0|0:0.496:0.53,0.443,0.027 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.004,0.122,0.873 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.914:0.002,0.082,0.916 1|1:1.933:0.001,0.065,0.934 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.571:0.036,0.357,0.607 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.002,0.082,0.916 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.953 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.905:0.002,0.092,0.907 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.003,0.098,0.899 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.861:0.002,0.134,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 19218540 SNP-3.19217299. C A . PASS AR2=0.999;DR2=0.999;AF=0.359 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.036:0.964,0.036,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.735:0,0.265,0.735 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19222783 SNP-3.19221542. A G . PASS AR2=0.99;DR2=0.992;AF=0.498 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.706:0.028,0.238,0.734 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.872:0.004,0.12,0.876 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.865:0.009,0.117,0.874 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.01,0.154,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.856:0.004,0.136,0.86 1|1:2:0,0,1 1|1:1.658:0.048,0.246,0.706 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.946:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.003,0.123,0.874 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.008,0.259,0.733 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.004,0.114,0.882 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.821:0.01,0.159,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19223361 SNP-3.19222120. A G . PASS AR2=0.904;DR2=0.927;AF=0.527 GT:DS:GP 1|0:1.191:0.165,0.48,0.356 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 0|1:1.143:0.168,0.522,0.31 1|1:2:0,0,1 1|1:1.92:0.002,0.077,0.921 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.844:0.004,0.147,0.848 1|1:1.827:0.006,0.162,0.832 0|0:0.842:0.342,0.474,0.184 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.303:0.124,0.449,0.427 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.221:0.145,0.488,0.367 1|0:1.193:0.158,0.49,0.351 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.301:0.125,0.45,0.425 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.187:0.163,0.486,0.35 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.331:0.73,0.209,0.061 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.174:0.163,0.5,0.337 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:1.347:0.107,0.439,0.454 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.071:0.197,0.535,0.268 0|1:1:0,1,0 1|1:1.363:0.102,0.433,0.465 1|1:1.218:0.146,0.49,0.364 1|1:1.379:0.097,0.427,0.476 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.301:0.125,0.45,0.425 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.367:0.101,0.432,0.467 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:1.822:0.002,0.173,0.824 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.241:0.146,0.466,0.388 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.362:0.102,0.433,0.464 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.303:0.12,0.458,0.422 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.332:0.112,0.445,0.444 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.318:0.115,0.452,0.433 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.287:0.129,0.455,0.416 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.181:0.169,0.48,0.35 1|1:2:0,0,1 1|0:1.07:0.237,0.456,0.307 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.175:0.168,0.489,0.343 0|0:0:1,0,0 1|1:1.791:0.003,0.203,0.794 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.347:0.107,0.439,0.454 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.36:0.103,0.434,0.463 1|1:1.228:0.141,0.49,0.369 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.002,0.087,0.911 1|1:1.999:0,0.001,0.999 0|1:1.363:0.102,0.433,0.465 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.309:0.12,0.452,0.429 1|1:1.36:0.103,0.434,0.463 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.328:0.114,0.443,0.443 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.362:0.102,0.433,0.464 +3 19225307 SNP-3.19224066. C A . PASS AR2=0.996;DR2=0.997;AF=0.349 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.009,0.188,0.803 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.918:0,0.082,0.918 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.767:0.009,0.214,0.776 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.821:0.01,0.16,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19238836 SNP-3.19237595. C A . PASS AR2=0.988;DR2=0.991;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.271:0.741,0.247,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.838,0.153,0.009 0|1:1:0,1,0 0|0:0.127:0.878,0.117,0.005 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.624:0.037,0.303,0.66 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.627:0.035,0.303,0.662 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.771:0.004,0.221,0.775 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.961,0.037,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.862,0.133,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.132:0.874,0.121,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.752,0.235,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.952,0.048,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19238905 SNP-3.19237664. C A . PASS AR2=0.95;DR2=0.957;AF=0.333 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.17:0.166,0.498,0.336 1|1:2:0,0,1 0|0:0.317:0.694,0.296,0.011 0|0:0.299:0.709,0.282,0.009 0|0:0:1,0,0 0|0:0.076:0.926,0.073,0.001 0|0:0.057:0.944,0.055,0.001 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 0|0:0.064:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.872,0.123,0.005 0|0:0:1,0,0 0|0:0.121:0.883,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.829,0.101,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.788,0.199,0.013 0|0:0.096:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.102:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.237:0.116,0.531,0.353 1|1:2:0,0,1 1|1:1.167:0.174,0.486,0.341 1|0:1.129:0.189,0.492,0.319 1|0:1.118:0.182,0.518,0.3 1|0:1.192:0.164,0.481,0.355 0|1:1.109:0.198,0.495,0.307 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.373:0.092,0.443,0.465 0|0:0:1,0,0 1|1:1.947:0.001,0.051,0.948 0|0:0.143:0.863,0.132,0.005 1|1:1.846:0.004,0.147,0.849 1|1:1.741:0.01,0.24,0.75 1|1:2:0,0,1 0|0:0.074:0.926,0.074,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.394:0.027,0.552,0.421 0|1:1.142:0.184,0.49,0.326 0|1:1.488:0.026,0.46,0.514 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.15:0.209,0.432,0.359 0|0:0:1,0,0 1|1:1.966:0,0.033,0.967 1|1:1.935:0.001,0.062,0.937 1|1:2:0,0,1 1|1:1.939:0.003,0.056,0.941 1|1:1.772:0.008,0.212,0.78 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0,0.056,0.943 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.076:0.926,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.002,0.097,0.901 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.028,0.972 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.824:0.029,0.118,0.853 0|0:0.12:0.883,0.114,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.003,0.098,0.899 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.695:0.014,0.278,0.708 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19241250 SNP-3.19240009. A G . PASS AR2=0.995;DR2=0.996;AF=0.266 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.749:0.018,0.216,0.766 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.736:0.02,0.224,0.756 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.064:0.937,0.063,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.254:0.786,0.174,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19243170 SNP-3.19241929. A G . PASS AR2=0.973;DR2=0.977;AF=0.503 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.058,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.873:0.005,0.117,0.878 1|1:1.855:0.005,0.134,0.861 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.088,0.91 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.81:0.013,0.164,0.823 0|0:0:1,0,0 1|1:1.853:0.006,0.134,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.006,0.132,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.945 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.893:0,0.107,0.893 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.714:0.032,0.222,0.746 1|1:1.805:0.009,0.177,0.814 1|1:2:0,0,1 1|1:1.81:0.008,0.175,0.818 1|1:1.663:0.023,0.291,0.686 0|1:1.291:0.041,0.626,0.332 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.593:0.026,0.356,0.619 0|0:0:1,0,0 1|1:1.627:0.055,0.263,0.682 0|0:0:1,0,0 1|1:1.94:0.001,0.057,0.941 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.764:0.011,0.214,0.775 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.898:0.003,0.096,0.901 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.607:0.025,0.343,0.632 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.633:0.022,0.323,0.655 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.883,0.117,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.002,0.096,0.901 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.005,0.126,0.869 1|1:1.901:0.002,0.094,0.903 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.945 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:1.873:0.004,0.12,0.877 1|1:2:0,0,1 1|1:1.787:0.026,0.161,0.813 1|1:1.847:0.006,0.14,0.854 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 1|1:1.877:0.004,0.116,0.881 1|1:2:0,0,1 1|1:1.844:0.006,0.143,0.85 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.003,0.092,0.905 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.008,0.15,0.842 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.954 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 +3 19243554 SNP-3.19242313. C A . PASS AR2=1;DR2=1;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19246770 SNP-3.19245529. A G . PASS AR2=0.998;DR2=0.999;AF=0.259 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.94,0.055,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0,0.069,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.965,0.034,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.098:0.902,0.097,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19247694 SNP-3.19246453. C A . PASS AR2=1;DR2=1;AF=0.37 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19247862 SNP-3.19246621. C A . PASS AR2=0.997;DR2=0.997;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.985:0.304,0.408,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.05,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.068:0.935,0.063,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19248594 SNP-3.19247353. C A . PASS AR2=0.999;DR2=0.999;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.004,0.133,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19248842 SNP-3.19247601. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19248864 SNP-3.19247623. C A . PASS AR2=1;DR2=1;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19248886 SNP-3.19247645. C A . PASS AR2=1;DR2=1;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19251900 SNP-3.19250659. C A . PASS AR2=0.987;DR2=0.988;AF=0.392 GT:DS:GP 0|0:0.055:0.946,0.053,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.87,0.126,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|1:1:0,1,0 0|0:0.119:0.885,0.112,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.817,0.173,0.01 0|0:0.195:0.816,0.172,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.858,0.133,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.936,0.064,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.182:0.824,0.169,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.066:0.936,0.062,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.105:0.897,0.1,0.002 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.115:0.888,0.108,0.003 0|0:0:1,0,0 0|0:0.089:0.914,0.084,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.091:0.91,0.089,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 1|0:1.214:0.157,0.472,0.371 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.023:0.044,0.889,0.067 0|0:0.04:0.961,0.039,0.001 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 0|0:0.114:0.892,0.102,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.131:0.877,0.114,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19251932 SNP-3.19250691. A G . PASS AR2=0.989;DR2=0.991;AF=0.246 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.046,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.003,0.087,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.792,0.197,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.221:0.791,0.198,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.14:0.861,0.139,0 0|0:0:1,0,0 0|0:0.192:0.815,0.179,0.006 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.399:0.651,0.299,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.943,0.053,0.004 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.807,0.185,0.008 0|0:0:1,0,0 +3 19252276 SNP-3.19251035. A G . PASS AR2=0.982;DR2=0.986;AF=0.295 GT:DS:GP 0|0:0.234:0.781,0.205,0.015 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0,0.057,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.539:0,0.46,0.539 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.945:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.757,0.222,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.846,0.147,0.007 0|0:0:1,0,0 0|0:0.139:0.866,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.15,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.163:0.844,0.15,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.205:0.805,0.185,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.385:0.659,0.296,0.044 1|1:1.761:0.012,0.215,0.773 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.238:0.777,0.208,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.212:0.799,0.189,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.208:0.803,0.185,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 +3 19253417 SNP-3.19252176. A G . PASS AR2=0.988;DR2=0.991;AF=0.497 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.667:0.002,0.329,0.669 1|1:2:0,0,1 1|1:1.881:0.001,0.118,0.882 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.018,0.227,0.755 1|1:1.738:0.017,0.229,0.754 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.718:0.021,0.241,0.738 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.011,0.188,0.801 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.001,0.071,0.928 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.021,0.288,0.691 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.411:0.035,0.518,0.446 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.007,0.149,0.844 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19256045 SNP-3.19254804. C A . PASS AR2=0.999;DR2=0.999;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.009:0.003,0.985,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19257814 SNP-3.19256573. A G . PASS AR2=0.879;DR2=0.911;AF=0.244 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.474:0.584,0.359,0.058 0|0:0.36:0.692,0.256,0.052 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.733:0.374,0.519,0.107 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.403:0.639,0.318,0.043 1|1:2:0,0,1 0|0:0.629:0.475,0.421,0.104 0|0:0:1,0,0 0|1:0.735:0.398,0.469,0.133 1|1:2:0,0,1 0|0:0.769:0.38,0.47,0.149 0|0:0.382:0.659,0.301,0.04 0|0:0:1,0,0 0|1:0.612:0.459,0.471,0.071 0|0:0:1,0,0 1|0:0.656:0.353,0.637,0.01 1|1:2:0,0,1 0|1:0.972:0.05,0.929,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.598:0.485,0.433,0.083 0|0:0.593:0.494,0.42,0.086 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.547:0.526,0.4,0.073 0|0:0.542:0.53,0.398,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.002,0.049,0.949 0|0:0:1,0,0 1|1:1.918:0.004,0.075,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.916:0.004,0.076,0.92 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.266:0.754,0.226,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.282:0.745,0.228,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.715,0.264,0.021 0|0:0.697:0.422,0.458,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.644,0.322,0.034 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.641:0.463,0.433,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.91:0.004,0.081,0.915 0|0:0:1,0,0 0|0:0.669:0.433,0.464,0.102 0|0:0:1,0,0 0|1:0.748:0.387,0.477,0.136 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0.242:0.765,0.229,0.006 0|0:0.007:0.993,0.007,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.004,0.075,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.526:0.543,0.388,0.069 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.384:0.658,0.3,0.042 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.241:0.774,0.21,0.015 1|1:1.937:0.003,0.058,0.94 0|0:0:1,0,0 0|0:0.413:0.626,0.334,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.606:0.498,0.398,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.407:0.633,0.326,0.04 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.442:0.615,0.328,0.057 0|0:0.372:0.658,0.312,0.03 1|1:2:0,0,1 0|0:0.167:0.86,0.112,0.028 0|0:0.739:0.361,0.539,0.1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.825:0.336,0.503,0.161 0|0:0:1,0,0 0|0:0.887:0.284,0.545,0.171 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.811:0.38,0.429,0.191 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 1|0:0.774:0.391,0.445,0.164 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.496:0.575,0.354,0.071 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.878,0.112,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.462:0.595,0.349,0.056 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.004,0.083,0.913 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19258481 SNP-3.19257240. C A . PASS AR2=0.982;DR2=0.989;AF=0.419 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.495:0.003,0.499,0.498 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.48:0.586,0.348,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.001,0.192,0.807 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.958:0.042,0.957,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0.001,0.029,0.97 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.555:0,0.445,0.555 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.444:0.615,0.325,0.059 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.439:0.62,0.321,0.059 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.489:0.069,0.374,0.557 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.535:0.532,0.4,0.068 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19264529 SNP-3.19263288. A G . PASS AR2=0.967;DR2=0.972;AF=0.239 GT:DS:GP 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.914:0.001,0.083,0.916 0|0:0:1,0,0 1|1:1.893:0.003,0.102,0.896 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 1|1:1.918:0.003,0.076,0.921 0|0:0.11:0.89,0.11,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.005,0.132,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.291:0.724,0.261,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.717,0.257,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.729:0.404,0.462,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.847,0.146,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.688,0.279,0.033 0|0:0.161:0.844,0.151,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.161:0.84,0.16,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.199:0.807,0.188,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.685:0.436,0.443,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.681:0.439,0.441,0.12 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.077:0.924,0.074,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 1|0:0.765:0.379,0.476,0.145 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.214:0.799,0.188,0.013 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.305:0.721,0.254,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19265090 SNP-3.19263849. C A . PASS AR2=0.984;DR2=0.987;AF=0.446 GT:DS:GP 0|0:0.17:0.837,0.157,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.247:0.754,0.244,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.869,0.126,0.004 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.175:0.831,0.164,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.162:0.843,0.153,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.134,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.452:0.549,0.451,0 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.247:0.782,0.189,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.86,0.135,0.006 0|0:0:1,0,0 1|1:1.925:0.002,0.07,0.928 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.778,0.206,0.016 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 0|0:0:1,0,0 0|0:0.135:0.871,0.124,0.005 0|0:0:1,0,0 0|0:0.098:0.904,0.093,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.04,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.157:0.85,0.144,0.007 0|0:0.12:0.883,0.113,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.837,0.154,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.002,0.07,0.928 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19266201 SNP-3.19264960. A G . PASS AR2=0.952;DR2=0.955;AF=0.476 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1.211:0.156,0.478,0.367 0|0:1.082:0.213,0.492,0.295 1|1:1.113:0.194,0.5,0.307 1|0:1:0,1,0 0|1:1.098:0.205,0.492,0.303 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.121:0.186,0.507,0.307 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0,0.083,0.917 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.614:0.035,0.316,0.649 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.712:0.021,0.247,0.733 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.865:0.003,0.128,0.869 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.611:0.063,0.263,0.674 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.175:0.169,0.486,0.344 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.128:0.192,0.488,0.32 1|1:2:0,0,1 0|1:0.971:0.263,0.502,0.234 1|1:1.114:0.197,0.492,0.311 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.176:0.833,0.158,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.173:0.836,0.156,0.009 1|0:1:0,1,0 1|0:1.253:0.144,0.46,0.396 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.82:0.011,0.158,0.831 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.079:0.215,0.492,0.293 0|0:0:1,0,0 1|1:1.122:0.202,0.475,0.323 0|1:1.154:0.184,0.479,0.338 1|0:1:0,1,0 1|1:1.974:0,0.025,0.974 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.154:0.184,0.479,0.338 1|0:1:0,1,0 0|1:1.079:0.214,0.492,0.293 1|1:2:0,0,1 0|0:0.156:0.853,0.139,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.002,0.065,0.933 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.002,0.086,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19266413 SNP-3.19265172. C A . PASS AR2=0.98;DR2=0.985;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:1.897:0.002,0.099,0.899 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.425:0.621,0.332,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.84:0.007,0.147,0.846 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.845:0.007,0.14,0.852 1|1:1.804:0.009,0.177,0.813 1|1:1.913:0.003,0.081,0.916 0|0:0.41:0.633,0.324,0.043 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.332:0.06,0.549,0.391 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.87:0.007,0.115,0.877 1|1:1.779:0.012,0.198,0.791 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.425:0.621,0.332,0.046 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.007,0.127,0.866 0|0:0:1,0,0 0|0:0.422:0.624,0.331,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.878:0.004,0.114,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0,0.041,0.958 0|0:0:1,0,0 0|0:0.425:0.621,0.332,0.046 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19266618 SNP-3.19265377. C A . PASS AR2=0.976;DR2=0.982;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.731:0.404,0.461,0.135 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1.378:0.058,0.506,0.436 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.51:0.501,0.489,0.01 1|1:2:0,0,1 1|1:1.828:0.003,0.166,0.831 1|1:2:0,0,1 0|1:0.642:0.47,0.419,0.111 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.971:0,0.028,0.972 1|0:1.01:0.245,0.5,0.255 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.729:0.405,0.461,0.134 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.731:0.404,0.461,0.135 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.731:0.404,0.461,0.135 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19271202 SNP-3.19269961. C A . PASS AR2=0.987;DR2=0.991;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.497:0.565,0.373,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.002,0.111,0.887 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.856:0.008,0.129,0.864 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.497:0.565,0.373,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.84,0.151,0.009 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.497:0.565,0.373,0.062 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.71:0.039,0.211,0.749 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19273141 SNP-3.19271900. C A . PASS AR2=0.969;DR2=0.976;AF=0.336 GT:DS:GP 0|0:0.058:0.944,0.055,0.002 1|1:1.781:0.012,0.194,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.014,0.2,0.786 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.699:0.019,0.262,0.719 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.748:0.014,0.224,0.762 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.686:0.022,0.271,0.708 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.581:0.501,0.416,0.082 1|1:1.585:0.053,0.31,0.638 1|1:2:0,0,1 1|1:1.814:0.002,0.182,0.816 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.012,0.245,0.744 0|0:0.132:0.872,0.124,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.009,0.172,0.819 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.635:0.033,0.298,0.669 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.02:0.002,0.975,0.023 0|0:0.213:0.825,0.136,0.039 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.025,0.226,0.75 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.005,0.119,0.877 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 1|1:1.777:0.011,0.2,0.788 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.823,0.166,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.01,0.177,0.813 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.809:0.008,0.174,0.818 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.882,0.113,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.872,0.126,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.272:0.754,0.22,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.927:0.005,0.064,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:1.662:0.02,0.298,0.682 0|0:0:1,0,0 +3 19281719 SNP-3.19280478. C A . PASS AR2=0.974;DR2=0.977;AF=0.401 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.19:0.171,0.468,0.361 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.246:0.145,0.464,0.391 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.069:0.213,0.506,0.281 1|1:1.135:0.186,0.492,0.322 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.842:0.006,0.145,0.848 0|1:1.046:0.111,0.732,0.157 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.919:0.003,0.075,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.008,0.201,0.791 1|1:1.52:0.04,0.4,0.56 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.13:0.872,0.125,0.003 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.699:0.016,0.269,0.715 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.145:0.054,0.746,0.2 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.049:0.226,0.498,0.275 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 0|0:0:1,0,0 1|0:1.119:0.195,0.492,0.314 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.104:0.203,0.491,0.307 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 19282070 SNP-3.19280829. A G . PASS AR2=0.964;DR2=0.97;AF=0.324 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.474:0.534,0.459,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.833,0.159,0.008 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:0.866:0.317,0.5,0.183 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.793:0.372,0.464,0.165 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.231:0.776,0.217,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.106:0.898,0.098,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.713,0.27,0.017 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.426:0.03,0.514,0.456 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.213:0.79,0.208,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.634,0.331,0.035 1|1:2:0,0,1 0|1:0.87:0.315,0.5,0.185 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.82,0.171,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.202:0.808,0.182,0.01 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.977:0.258,0.506,0.236 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.923:0.284,0.51,0.206 1|1:2:0,0,1 0|0:0.222:0.788,0.202,0.01 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.946:0.28,0.493,0.226 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.97:0.273,0.483,0.243 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19283750 SNP-3.19282509. C A . PASS AR2=0.975;DR2=0.978;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.315:0.688,0.309,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.861:0.322,0.495,0.183 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.996:0.253,0.498,0.249 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.977:0,0.023,0.977 0|1:1.426:0.037,0.499,0.464 0|1:0.927:0.252,0.568,0.179 1|1:2:0,0,1 0|1:1.328:0.079,0.515,0.406 1|1:1.362:0.064,0.51,0.426 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.618:0.021,0.341,0.638 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.991:0.239,0.53,0.23 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.96:0.265,0.511,0.225 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.964:0.273,0.491,0.237 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 19284115 SNP-3.19282874. C A . PASS AR2=0.968;DR2=0.974;AF=0.441 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.887,0.113,0.001 0|0:0.088:0.915,0.082,0.003 0|0:0.083:0.92,0.076,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.975,0.024,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.139:0.862,0.137,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.3:0.732,0.236,0.032 0|0:0.161:0.845,0.148,0.007 0|0:0.057:0.944,0.056,0.001 0|0:0:1,0,0 0|0:0.152:0.856,0.136,0.008 0|0:0:1,0,0 0|0:0.148:0.86,0.133,0.007 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.911,0.085,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.746,0.225,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.531:0.005,0.459,0.536 0|0:0:1,0,0 1|1:1.962:0.001,0.037,0.963 0|1:1.298:0.034,0.634,0.332 1|1:1.64:0.006,0.348,0.646 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.531:0.004,0.462,0.535 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.423:0.615,0.346,0.039 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.934:0.293,0.479,0.228 1|1:2:0,0,1 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.466:0.008,0.518,0.474 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.886,0.107,0.007 1|0:0.852:0.328,0.493,0.18 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.899,0.093,0.008 0|0:0.128:0.876,0.121,0.004 0|0:0.03:0.97,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.973:0.261,0.506,0.234 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.14:0.865,0.131,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.834:0.338,0.49,0.172 0|0:0:1,0,0 0|0:0.069:0.933,0.065,0.002 0|0:0.187:0.82,0.173,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.021:0.979,0.021,0 0|0:0.024:0.976,0.023,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.864,0.135,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19284183 SNP-3.19282942. A G . PASS AR2=0.937;DR2=0.954;AF=0.517 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 0|1:1.374:0.107,0.411,0.481 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.716:0.021,0.241,0.738 1|1:1.66:0.032,0.276,0.692 1|1:2:0,0,1 1|1:1.784:0.016,0.185,0.8 1|1:1.665:0.026,0.284,0.691 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.013,0.166,0.821 1|1:1.826:0.01,0.154,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.647:0.03,0.292,0.678 1|1:1.852:0.01,0.128,0.862 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.465:0.072,0.39,0.538 1|1:2:0,0,1 1|1:1.378:0.022,0.577,0.4 1|1:2:0,0,1 0|1:1.071:0.158,0.612,0.229 1|1:1.797:0.017,0.168,0.815 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.535:0.046,0.374,0.58 1|1:2:0,0,1 1|1:1.754:0.015,0.216,0.769 1|1:1.736:0.018,0.228,0.754 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.668:0.026,0.281,0.693 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.867:0.004,0.124,0.872 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.592:0.034,0.34,0.626 0|1:1.478:0.048,0.425,0.526 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.914:0.001,0.083,0.916 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.358:0.097,0.449,0.455 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.01,0.184,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.669:0.027,0.278,0.695 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.388:0.06,0.492,0.448 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.002,0.099,0.899 0|0:0.002:0.998,0.002,0 1|1:1.94:0.001,0.059,0.94 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.411:0.074,0.441,0.485 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.651:0.031,0.288,0.682 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.766:0.014,0.205,0.78 1|1:1.836:0.009,0.146,0.845 1|1:1.587:0.047,0.32,0.633 1|1:1.822:0.013,0.151,0.835 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.509:0.066,0.359,0.575 1|1:2:0,0,1 1|1:1.641:0.024,0.31,0.666 0|0:0:1,0,0 1|1:1.814:0.009,0.167,0.823 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.699:0.024,0.254,0.723 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.543:0.027,0.402,0.571 1|1:1.848:0.007,0.139,0.855 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.836:0.01,0.144,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.001,0.08,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.826:0.01,0.154,0.836 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.756:0.018,0.209,0.773 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19284232 SNP-3.19282991. C A . PASS AR2=0.993;DR2=0.994;AF=0.421 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|0:0.704:0.325,0.647,0.028 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.956 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.665,0.322,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.002,0.066,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.001,0.063,0.936 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.906,0.093,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.175:0.833,0.159,0.008 0|0:0:1,0,0 0|0:0.085:0.918,0.08,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.128:0.872,0.128,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19287495 SNP-3.19286254. C A . PASS AR2=0.978;DR2=0.983;AF=0.419 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.894,0.103,0.003 0|0:0.196:0.813,0.177,0.009 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.22:0.79,0.2,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.79,0.202,0.007 0|0:0.089:0.914,0.084,0.002 0|0:0.069:0.932,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.313:0.134,0.418,0.447 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.758:0.015,0.211,0.774 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.916,0.083,0.001 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.086:0.206,0.502,0.292 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.035:0.194,0.577,0.229 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.096:0.907,0.091,0.003 0|0:0:1,0,0 0|0:0.103:0.9,0.097,0.003 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.074:0.928,0.07,0.002 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.111:0.893,0.104,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.104,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.347:0.113,0.427,0.46 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19287814 SNP-3.19286573. C A . PASS AR2=0.973;DR2=0.977;AF=0.477 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.226:0.787,0.2,0.013 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.223:0.79,0.198,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.828,0.162,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.335:0.682,0.3,0.018 0|0:0:1,0,0 1|0:0.607:0.445,0.503,0.052 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.815,0.175,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.872:0.319,0.49,0.191 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.82,0.172,0.008 0|0:0.218:0.793,0.196,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.772:0.015,0.198,0.787 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.342:0.681,0.296,0.023 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.893:0.307,0.493,0.2 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.761,0.221,0.018 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.815,0.174,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.777:0,0.223,0.777 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.177:0.171,0.481,0.348 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.158:0.85,0.142,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.202:0.135,0.527,0.338 0|0:0.346:0.673,0.308,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19288045 SNP-3.19286804. C A . PASS AR2=0.98;DR2=0.986;AF=0.437 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.003,0.086,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.912:0.002,0.083,0.915 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.676:0.357,0.611,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.519:0.061,0.358,0.58 0|0:0:1,0,0 0|1:1.527:0.06,0.352,0.588 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.493:0.064,0.379,0.557 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.566:0.024,0.386,0.59 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.004,0.114,0.883 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.008,0.157,0.835 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.071,0.927 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.005,0.124,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.306:0.037,0.621,0.342 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.854:0.006,0.134,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.52:0.062,0.356,0.582 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19288594 SNP-3.19287353. C A . PASS AR2=0.982;DR2=0.986;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.97:0.001,0.028,0.971 1|1:1.917:0.002,0.078,0.919 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.011,0.147,0.841 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.915:0.003,0.079,0.918 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:1.918:0.002,0.077,0.92 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.937:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.09,0.907 1|1:2:0,0,1 1|1:1.925:0.001,0.074,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.903:0.002,0.092,0.905 0|0:0.008:0.992,0.008,0 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.001,0.07,0.929 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0.002,0.077,0.921 1|1:2:0,0,1 1|1:1.933:0.002,0.064,0.934 1|1:2:0,0,1 0|1:1.322:0.02,0.639,0.342 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0,0.059,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.177:0.355,0.114,0.532 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.005,0.129,0.866 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.003,0.115,0.882 0|0:0:1,0,0 1|1:1.881:0.004,0.112,0.884 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0,0.053,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.003,0.099,0.898 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.9:0.003,0.094,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.006,0.131,0.863 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.96:0.001,0.038,0.961 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 +3 19289149 SNP-3.19287908. C A . PASS AR2=0.981;DR2=0.987;AF=0.47 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.055:0.945,0.055,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.443:0.611,0.335,0.054 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.361:0.671,0.296,0.032 0|0:0:1,0,0 0|0:0.377:0.659,0.305,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.886:0.002,0.11,0.888 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0.278:0.74,0.242,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.235:0.777,0.211,0.012 0|0:0:1,0,0 0|0:0.365:0.669,0.298,0.034 1|0:0.531:0.535,0.399,0.066 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.362:0.671,0.296,0.033 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:0.483:0.582,0.352,0.065 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19289418 SNP-3.19288177. C A . PASS AR2=0.964;DR2=0.968;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.931:0.142,0.785,0.073 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.275:0.736,0.253,0.011 0|0:0:1,0,0 0|0:0.151:0.85,0.148,0.002 0|0:0:1,0,0 0|0:0.146:0.861,0.133,0.007 0|0:0.189:0.821,0.169,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.15,0.008 0|0:0:1,0,0 0|0:0.18:0.828,0.163,0.008 0|0:0.235:0.779,0.207,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.809,0.18,0.01 1|0:0.912:0.298,0.493,0.21 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.796:0.356,0.492,0.152 0|0:0:1,0,0 0|0:0.186:0.822,0.17,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0.194:0.816,0.174,0.01 0|0:0.175:0.833,0.159,0.008 0|0:0.194:0.813,0.18,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.065:0.937,0.061,0.002 1|1:2:0,0,1 0|0:0.219:0.797,0.188,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.908:0.299,0.494,0.207 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0.441:0.563,0.432,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.322:0,0.678,0.322 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 0|0:0.183:0.826,0.165,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.686:0.027,0.26,0.713 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.217:0.795,0.192,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.908,0.088,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.141:0.864,0.13,0.006 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.9:0.304,0.492,0.204 0|0:0:1,0,0 0|0:0.064:0.937,0.063,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.161:0.845,0.148,0.007 0|0:0.165:0.842,0.152,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.798,0.19,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.168:0.839,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.91,0.089,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 19289684 SNP-3.19288443. A G . PASS AR2=0.899;DR2=0.928;AF=0.422 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.3:0.122,0.457,0.422 1|1:1.745:0.017,0.221,0.762 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.339:0.112,0.437,0.451 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.818:0.014,0.154,0.832 1|1:2:0,0,1 1|1:1.466:0.072,0.39,0.538 1|1:2:0,0,1 1|1:1.64:0.029,0.302,0.669 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.208:0.212,0.368,0.42 0|1:1.452:0.078,0.392,0.53 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.352:0.109,0.431,0.461 0|0:0:1,0,0 1|1:1.425:0.092,0.39,0.517 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.525:0.06,0.356,0.584 1|1:2:0,0,1 1|1:1.237:0.139,0.486,0.375 1|1:1.531:0.065,0.339,0.596 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.013,0.16,0.827 1|1:1.477:0.06,0.404,0.536 0|0:0:1,0,0 1|1:1.744:0.02,0.216,0.764 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|0:1.343:0.111,0.434,0.454 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.583:0.037,0.343,0.62 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.757:0.011,0.22,0.769 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.625:0.044,0.286,0.669 1|1:1.908:0.005,0.082,0.913 1|1:2:0,0,1 0|1:1.452:0.07,0.407,0.523 0|0:0:1,0,0 1|1:1.86:0.009,0.122,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.382:0.087,0.445,0.468 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.407:0.091,0.41,0.498 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.771:0.005,0.22,0.776 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.608:0.046,0.3,0.654 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.467:0.07,0.394,0.537 1|1:1.842:0.008,0.143,0.849 0|0:0:1,0,0 1|1:1.324:0.115,0.445,0.439 1|1:1.771:0.016,0.198,0.787 0|0:0:1,0,0 1|1:1.408:0.091,0.41,0.499 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.711:0.023,0.243,0.734 1|1:1.873:0.005,0.116,0.878 0|0:0:1,0,0 1|1:1.354:0.117,0.412,0.471 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.292:0.122,0.464,0.414 1|1:1.767:0.004,0.225,0.771 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.507:0.079,0.335,0.586 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.417:0.046,0.491,0.463 1|1:1.692:0.021,0.267,0.712 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.743:0.02,0.217,0.763 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.012,0.14,0.848 1|1:1.906:0.003,0.089,0.909 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.868:0.007,0.117,0.875 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.154:0.212,0.422,0.366 0|0:0:1,0,0 1|0:1.341:0.112,0.435,0.453 1|1:2:0,0,1 1|1:1.352:0.109,0.431,0.46 1|1:1.986:0,0.014,0.986 1|0:1.198:0.165,0.472,0.363 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|0:1.289:0.128,0.455,0.417 0|0:0:1,0,0 1|1:1.352:0.109,0.431,0.461 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 +3 19292046 SNP-3.19290805. C A . PASS AR2=0.973;DR2=0.976;AF=0.384 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.987:0,0.012,0.987 0|0:0:1,0,0 0|0:0.16:0.848,0.145,0.007 0|0:0.057:0.944,0.056,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|0:0.945:0.28,0.494,0.225 0|0:0:1,0,0 0|0:0.277:0.744,0.235,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.844,0.148,0.008 0|0:0:1,0,0 0|1:0.827:0.335,0.503,0.162 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.727:0.019,0.235,0.746 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.085,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.188:0.15,0.511,0.338 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.668:0.003,0.326,0.671 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|1:1:0,1,0 1|1:1.757:0.002,0.238,0.759 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.143:0.861,0.135,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:0.937:0.283,0.496,0.22 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.753:0.001,0.246,0.753 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.982 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.869:0,0.13,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.929:0.289,0.493,0.218 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.175:0.833,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.342:0.712,0.235,0.054 0|0:0.131:0.875,0.118,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.865,0.128,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.271:0.749,0.231,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19294696 SNP-3.19293206. C A . PASS AR2=0.967;DR2=0.968;AF=0.434 GT:DS:GP 0|0:0.02:0.98,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 1|0:1.008:0.263,0.465,0.271 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.9,0.096,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.097:0.903,0.097,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.954:0.272,0.502,0.226 0|0:0.001:0.999,0.001,0 1|0:0.963:0.267,0.504,0.23 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.918:0.292,0.499,0.209 1|0:0.934:0.283,0.5,0.217 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.916:0.294,0.495,0.21 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.935:0.283,0.499,0.218 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.002,0.144,0.854 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|1:0.869:0.323,0.486,0.191 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.927:0.289,0.495,0.216 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.979:0.255,0.51,0.235 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.862:0.326,0.485,0.189 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.925:0.289,0.498,0.214 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.009:0.991,0.009,0 0|0:0.078:0.925,0.073,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.92:0.291,0.497,0.212 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.955:0.271,0.503,0.226 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19295568 SNP-3.19294078. C A . PASS AR2=0.932;DR2=0.951;AF=0.345 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.293:0.729,0.25,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.939:0.003,0.056,0.941 1|1:2:0,0,1 0|1:0.97:0.275,0.481,0.244 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.726,0.259,0.015 1|0:1.011:0.301,0.387,0.312 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.247:0.766,0.221,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.313:0.711,0.264,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.404:0.637,0.322,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.079,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.382:0.664,0.29,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.222:0.787,0.203,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.925,0.07,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.466:0.571,0.393,0.037 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.019,0.21,0.77 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.507:0.06,0.372,0.567 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.793:0.011,0.185,0.804 1|1:1.251:0.137,0.474,0.389 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.178:0.83,0.162,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.748:0.385,0.483,0.133 1|1:2:0,0,1 0|0:0.254:0.767,0.212,0.021 0|0:1.046:0.367,0.22,0.413 1|1:1.434:0.079,0.408,0.513 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.795:0.01,0.185,0.805 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.007,0.175,0.818 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.247:0.787,0.179,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|1:1.375:0.105,0.415,0.48 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.55:0.49,0.469,0.04 0|0:0:1,0,0 0|0:0.223:0.792,0.192,0.016 0|0:0.213:0.804,0.179,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.72,0.257,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.699:0.436,0.428,0.136 0|0:0.118:0.885,0.113,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.718,0.26,0.022 0|0:0:1,0,0 0|0:0.085:0.92,0.075,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.236:0.782,0.199,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.711,0.271,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.714,0.262,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.004,0.143,0.853 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.02,0 +3 19296252 SNP-3.19294762. A G . PASS AR2=0.993;DR2=0.995;AF=0.258 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.69:0.31,0.69,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.69:0.31,0.69,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.69:0.31,0.69,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.69:0.31,0.69,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19296949 SNP-3.19295459. A G . PASS AR2=1;DR2=1;AF=0.284 GT:DS:GP 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19297394 SNP-3.19295904. A G . PASS AR2=0.999;DR2=0.999;AF=0.274 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.003:0.002,0.992,0.006 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.003,0.086,0.911 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.998:0.002,0.998,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.007:0.001,0.991,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19301555 SNP-3.19300065. C A . PASS AR2=0.94;DR2=0.956;AF=0.453 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.133:0.874,0.119,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.245:0.151,0.453,0.396 1|1:1.488:0.076,0.36,0.564 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.575:0.058,0.309,0.633 1|1:1.422:0.082,0.413,0.505 0|0:0.209:0.806,0.18,0.014 0|0:0:1,0,0 1|0:0.855:0.283,0.579,0.138 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.515,0.403,0.082 0|0:0:1,0,0 0|0:0.091:0.911,0.088,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.883,0.115,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.621:0.474,0.431,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.266:0.749,0.236,0.015 0|0:0.094:0.91,0.087,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.931 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 1|1:1.625:0.055,0.264,0.681 1|1:2:0,0,1 1|1:1.933:0.001,0.064,0.934 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.912:0.001,0.085,0.914 1|1:1.925:0.001,0.072,0.927 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.136:0.874,0.117,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0,0.045,0.955 1|1:1.839:0.004,0.152,0.844 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 1|0:0.653:0.452,0.442,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.637:0.461,0.44,0.098 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.682:0.033,0.253,0.715 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.485:0.075,0.365,0.56 1|1:2:0,0,1 1|1:1.106:0.216,0.461,0.323 1|1:1.674:0.034,0.258,0.708 0|0:0:1,0,0 0|0:0.776:0.4,0.424,0.176 0|0:0.452:0.603,0.343,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.734:0.392,0.483,0.125 1|1:2:0,0,1 0|0:0.107:0.896,0.1,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.881:0.002,0.114,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.002,0.051,0.946 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.705:0.029,0.237,0.734 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.414:0.092,0.401,0.507 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.46:0.078,0.383,0.538 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.115:0.892,0.101,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:1.94:0.002,0.055,0.942 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:1.676:0.032,0.259,0.709 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19302439 SNP-3.19300949. C A . PASS AR2=0.975;DR2=0.978;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.71:0.023,0.245,0.733 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.797,0.187,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.876,0.118,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.915,0.081,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.892:0.003,0.101,0.896 1|1:1.9:0.003,0.095,0.902 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:1.876:0.004,0.116,0.88 1|1:2:0,0,1 1|1:1.85:0.006,0.138,0.856 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.879:0.004,0.112,0.884 1|1:1.746:0.018,0.218,0.764 1|1:1.844:0.01,0.136,0.854 1|1:1.923:0.002,0.073,0.925 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.986:0.315,0.384,0.301 1|1:2:0,0,1 1|1:1.846:0.007,0.14,0.853 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.004,0.105,0.891 1|1:2:0,0,1 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 1|1:1.867:0.004,0.124,0.871 1|1:1.929:0.002,0.067,0.931 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.002,0.047,0.952 0|1:1.204:0.013,0.769,0.217 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.05:0.95,0.05,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.008,0.213,0.78 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.004,0.122,0.874 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.902,0.094,0.004 0|0:0.196:0.823,0.158,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.912,0.087,0 1|1:1.973:0.001,0.025,0.974 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.49:0.184,0.143,0.673 1|1:2:0,0,1 1|1:1.894:0.005,0.095,0.899 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.876:0.006,0.112,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.936,0.061,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.924:0.002,0.071,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19309647 SNP-3.19308157. C A . PASS AR2=0.965;DR2=0.971;AF=0.423 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.344:0.7,0.257,0.043 0|0:0.196:0.821,0.162,0.017 1|1:1.986:0,0.014,0.986 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.892,0.103,0.005 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.199:0.823,0.155,0.022 0|0:0:1,0,0 0|0:0.179:0.831,0.159,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.897,0.099,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.819:0.258,0.664,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.882,0.109,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.13:0.874,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.844,0.149,0.008 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.189:0.823,0.166,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 0|1:0.865:0.241,0.652,0.107 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.575:0.592,0.241,0.167 0|1:0.83:0.25,0.669,0.08 0|0:0.183:0.829,0.159,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.319:0.701,0.279,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0.075:0.926,0.072,0.001 1|0:1:0,1,0 0|0:0.358:0.669,0.305,0.026 0|0:0.425:0.646,0.282,0.072 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.115:0.89,0.106,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.863:0.244,0.648,0.108 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.102:0.904,0.089,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.734,0.239,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.892,0.105,0.004 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.826:0.248,0.678,0.074 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|0:0.109:0.892,0.107,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.847:0.254,0.645,0.101 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19315968 SNP-3.19314478. C A . PASS AR2=0.988;DR2=0.989;AF=0.308 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.834:0.329,0.509,0.163 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.011,0.159,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.005,0.132,0.863 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.877:0.005,0.114,0.882 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.634:0.034,0.299,0.667 1|1:1.96:0.001,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.923:0.001,0.075,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.837:0.019,0.125,0.856 0|1:1:0,1,0 0|0:0.06:0.945,0.051,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.86:0.006,0.128,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0.018,0.143,0.839 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.006,0.095,0.899 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19316683 SNP-3.19315193. C A . PASS AR2=0.969;DR2=0.978;AF=0.263 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.593:0.038,0.331,0.631 0|0:0.062:0.94,0.058,0.002 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.902,0.095,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.593:0.053,0.301,0.646 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.714:0.025,0.236,0.739 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.033:0.136,0.694,0.169 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.41:0.14,0.31,0.55 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.397:0.099,0.404,0.497 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.682:0.025,0.269,0.706 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|0:1.207:0.16,0.474,0.367 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.585:0.453,0.509,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.393:0.04,0.526,0.433 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.72:0.023,0.235,0.743 1|1:1.883:0.007,0.103,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.006,0.117,0.877 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19317266 SNP-3.19315776. A G . PASS AR2=0.999;DR2=0.999;AF=0.276 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.97:0.045,0.939,0.015 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.967:0.043,0.947,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.972:0.043,0.942,0.015 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19317544 SNP-3.19316054. C A . PASS AR2=0.989;DR2=0.993;AF=0.38 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.56:0.507,0.426,0.067 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.239:0.763,0.236,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.216:0.79,0.203,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.761:0.389,0.461,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.605:0.476,0.444,0.081 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19318627 SNP-3.19317137. C A . PASS AR2=0.913;DR2=0.933;AF=0.264 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.739:0.427,0.406,0.166 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.531:0.546,0.377,0.077 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.847:0.306,0.542,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.173:0.223,0.381,0.396 1|1:1.501:0.072,0.354,0.574 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.568:0.051,0.329,0.62 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.011:0.28,0.428,0.292 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.013,0.173,0.814 1|1:2:0,0,1 1|1:1.617:0.025,0.332,0.642 0|1:1.08:0.276,0.369,0.355 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.82:0.008,0.164,0.828 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.222:0.073,0.632,0.295 1|1:1.872:0.004,0.12,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.192:0.151,0.506,0.343 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.052:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.141:0.875,0.11,0.016 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.567:0.03,0.373,0.597 0|1:0.804:0.324,0.548,0.128 1|1:1.63:0.046,0.278,0.676 1|1:2:0,0,1 1|1:1.551:0.076,0.297,0.627 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:1.093:0.237,0.433,0.33 1|1:1.709:0.036,0.219,0.745 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.103:0.111,0.675,0.214 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.022,0.263,0.715 1|1:2:0,0,1 1|0:0.925:0.247,0.581,0.172 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.386:0.643,0.327,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.797:0.015,0.173,0.812 1|1:2:0,0,1 1|1:1.764:0.022,0.192,0.786 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.666:0.412,0.509,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.511:0.074,0.342,0.585 1|1:2:0,0,1 1|1:1.511:0.073,0.342,0.585 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.742:0.025,0.209,0.766 1|1:1.865:0.007,0.121,0.872 1|1:1.44:0.091,0.379,0.531 1|1:2:0,0,1 0|1:1.294:0.127,0.453,0.42 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.225:0.16,0.454,0.386 0|0:0:1,0,0 +3 19318755 SNP-3.19317265. A G . PASS AR2=0.928;DR2=0.944;AF=0.242 GT:DS:GP 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.895:0.313,0.479,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.765:0.468,0.299,0.233 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.714:0.022,0.242,0.736 1|1:1.598:0.034,0.333,0.632 1|0:1.195:0.054,0.698,0.248 1|1:2:0,0,1 0|0:0.481:0.613,0.294,0.094 1|1:0.95:0.282,0.486,0.232 1|1:2:0,0,1 0|0:0.052:0.949,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.167:0.263,0.308,0.43 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.873:0.318,0.491,0.191 0|0:0:1,0,0 1|0:0.857:0.328,0.488,0.185 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.927:0.289,0.495,0.216 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.564:0.503,0.431,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 0|0:0.173:0.834,0.158,0.007 0|0:0:1,0,0 0|1:0.886:0.311,0.493,0.197 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.295:0.726,0.254,0.02 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.867:0.322,0.49,0.189 0|0:0.093:0.908,0.092,0 0|0:0:1,0,0 0|0:0.191:0.818,0.172,0.009 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.526:0.059,0.356,0.585 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.872:0.319,0.49,0.191 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.125:0.881,0.114,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.27:0.749,0.232,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.863:0.324,0.489,0.187 0|0:0:1,0,0 0|0:0.209:0.797,0.198,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.474:0.157,0.213,0.63 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.04,0.001 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 0|0:0.17:0.84,0.15,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19321635 SNP-3.19320145. C A . PASS AR2=0.965;DR2=0.974;AF=0.317 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.43:0.079,0.412,0.509 1|1:2:0,0,1 1|1:1.473:0.07,0.387,0.543 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.004,0.139,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.763:0.02,0.198,0.782 1|1:1.757:0.029,0.186,0.785 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.186:0.814,0.185,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.577:0.045,0.333,0.622 1|1:1.871:0.004,0.121,0.875 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.008,0.161,0.831 1|1:1.951:0.002,0.044,0.954 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|1:1.928:0.002,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.613:0.04,0.308,0.652 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.464:0.073,0.39,0.537 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.489:0.058,0.396,0.546 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.683:0.02,0.277,0.703 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.001,0.062,0.937 0|0:0.139:0.875,0.111,0.014 1|1:1.847:0.006,0.142,0.852 0|0:0:1,0,0 1|1:1.565:0.046,0.343,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.499:0.065,0.371,0.564 1|1:1.942:0.001,0.055,0.943 1|1:2:0,0,1 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.788:0.008,0.196,0.796 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.617:0.048,0.287,0.665 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19321748 SNP-3.19320258. C A . PASS AR2=0.966;DR2=0.977;AF=0.359 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.529:0.542,0.387,0.071 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.54:0.534,0.392,0.074 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.511:0.555,0.379,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:1.944:0.002,0.053,0.945 0|1:1:0,1,0 1|1:1.878:0.004,0.114,0.882 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.883:0.004,0.11,0.886 1|1:1.542:0.002,0.454,0.544 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 1|1:1.912:0.002,0.083,0.914 1|1:2:0,0,1 1|1:1.902:0.002,0.093,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.081,0.918 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.451:0.557,0.435,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.923:0.002,0.074,0.924 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0.001,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.889:0.001,0.109,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.392:0.642,0.325,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.535:0.538,0.39,0.072 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.534:0.538,0.391,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.002,0.13,0.868 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.003,0.077,0.92 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.519:0.549,0.382,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.002,0.067,0.931 1|1:1.957:0.001,0.04,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.004,0.208,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.002,0.074,0.924 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0.001,0.033,0.966 0|0:0:1,0,0 0|0:0.536:0.536,0.391,0.073 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19321768 SNP-3.19320278. C A . PASS AR2=0.991;DR2=0.992;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.831:0.009,0.151,0.84 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.008,0.161,0.831 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0.001 0|0:0:1,0,0 0|0:0.063:0.94,0.056,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.94,0.057,0.003 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.002,0.114,0.885 1|1:1.891:0.002,0.105,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.007,0.166,0.827 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.907:0.001,0.09,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.004,0.141,0.854 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 1|1:1.952:0.001,0.047,0.952 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.008,0.139,0.853 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.864:0.004,0.129,0.867 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.01,0.132,0.858 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19321908 SNP-3.19320418. A G . PASS AR2=0.973;DR2=0.981;AF=0.284 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.105:0.897,0.101,0.002 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.153:0.857,0.132,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.54:0.534,0.392,0.074 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 0|1:1.195:0.042,0.72,0.238 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.073:0.928,0.071,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.846,0.144,0.009 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.921,0.075,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.907,0.089,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.516:0.55,0.383,0.067 0|0:0:1,0,0 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.505:0.558,0.378,0.063 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.23:0.787,0.196,0.017 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.201:0.036,0.726,0.238 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.501:0.562,0.375,0.063 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.501:0.561,0.376,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 +3 19322247 SNP-3.19320757. A G . PASS AR2=0.988;DR2=0.993;AF=0.268 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.547:0.528,0.397,0.075 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.2:0.002,0.796,0.202 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.608:0.485,0.423,0.092 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.568:0.514,0.405,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19323330 SNP-3.19321840. C A . PASS AR2=0.981;DR2=0.985;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.649:0.032,0.288,0.681 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.624:0.036,0.304,0.66 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.002,0.145,0.853 1|1:2:0,0,1 1|1:1.808:0.009,0.174,0.817 1|1:1.712:0.026,0.236,0.738 1|1:2:0,0,1 1|1:1.849:0.003,0.145,0.852 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:1.647:0.032,0.29,0.678 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.097:0.903,0.097,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.003,0.151,0.846 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.597:0.045,0.313,0.642 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.035,0.321,0.644 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.959:0,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.718:0.018,0.246,0.736 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.901:0.003,0.093,0.904 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.948:0.001,0.051,0.948 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.961 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.699:0.026,0.25,0.724 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19325067 SNP-3.19323577. A G . PASS AR2=0.975;DR2=0.979;AF=0.551 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.85:0.004,0.142,0.854 1|1:1.897:0.006,0.091,0.903 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.006,0.137,0.857 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.7:0.015,0.27,0.715 1|1:2:0,0,1 1|1:1.913:0.002,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.806:0.011,0.173,0.817 1|1:2:0,0,1 1|1:1.869:0.004,0.123,0.873 1|1:1.762:0.014,0.21,0.776 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.815:0.011,0.163,0.826 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.914:0.002,0.083,0.916 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.099:0.086,0.729,0.185 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.552:0.103,0.243,0.654 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.899:0.003,0.095,0.902 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.979:0,0.02,0.98 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.927:0.123,0.827,0.05 1|1:1.555:0.022,0.401,0.577 0|1:1:0,1,0 1|1:1.898:0.003,0.095,0.901 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.044,0.955 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.002,0.084,0.914 1|1:1.721:0.048,0.184,0.769 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.004,0.08,0.916 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.005,0.132,0.864 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.869:0.005,0.121,0.874 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.009,0.165,0.826 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0.003,0.041,0.957 1|1:1.832:0.008,0.152,0.84 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.915:0.002,0.082,0.917 0|1:1:0,1,0 1|1:1.863:0.002,0.132,0.865 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.853:0.005,0.136,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.003,0.087,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.907:0.002,0.089,0.909 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.898:0.004,0.095,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.863:0.009,0.118,0.872 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0.001,0.053,0.945 0|0:0:1,0,0 1|1:2:0,0,1 +3 19330460 SNP-3.19328970. A G . PASS AR2=0.904;DR2=0.928;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.856,0.14,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.368:0.665,0.302,0.033 0|0:0:1,0,0 0|0:0.374:0.661,0.304,0.035 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.39:0.651,0.307,0.041 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.931:0.291,0.488,0.222 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.927,0.07,0.003 0|0:0.217:0.792,0.198,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.55:0.499,0.453,0.049 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.856,0.135,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.997:0.219,0.564,0.217 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0.084:0.918,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.874,0.119,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.452:0.072,0.404,0.524 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.925:0.233,0.609,0.158 0|0:0.411:0.616,0.357,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.871,0.126,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.831,0.157,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.88,0.119,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.305:0.719,0.258,0.023 0|0:0:1,0,0 0|1:0.569:0.507,0.417,0.076 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.508:0.518,0.456,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.173:0.119,0.589,0.292 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.434:0.085,0.396,0.519 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.045,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.042:0.958,0.042,0 0|0:0.315:0.712,0.262,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 0|1:0.839:0.34,0.48,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.503:0.065,0.367,0.568 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.493:0.61,0.287,0.103 0|0:0.36:0.674,0.293,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.326:0.705,0.264,0.031 0|0:0:1,0,0 1|0:0.786:0.386,0.441,0.173 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.437:0.083,0.396,0.521 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.477:0.065,0.393,0.542 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.181:0.848,0.123,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.131:0.136,0.596,0.268 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.386:0.652,0.31,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.868,0.125,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.78,0.197,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.73,0.266,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19339191 SNP-3.19337701. A G . PASS AR2=0.985;DR2=0.989;AF=0.279 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.107,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.909,0.088,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.662:0.365,0.609,0.026 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.091,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.773,0.208,0.018 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.158:0.848,0.147,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.365:0.672,0.291,0.037 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0,0.082,0.917 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.871,0.117,0.011 1|0:0.631:0.495,0.38,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19340848 SNP-3.19339358. C A . PASS AR2=0.992;DR2=0.994;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.97:0,0.029,0.97 1|1:1.981:0,0.018,0.981 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.047:0.953,0.047,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.014,0.985 1|1:1.918:0,0.082,0.918 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.003,0.058,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.113:0.89,0.108,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.823:0.014,0.148,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.709:0.445,0.4,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.005,0.074,0.921 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 +3 19341601 SNP-3.19340111. A G . PASS AR2=0.952;DR2=0.963;AF=0.475 GT:DS:GP 1|1:1.799:0.013,0.175,0.812 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.799:0.008,0.185,0.807 1|1:1.921:0,0.079,0.921 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.291:0.11,0.49,0.401 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.925:0.001,0.072,0.926 0|0:0:1,0,0 1|1:1.929:0.002,0.067,0.931 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.048,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.906:0.008,0.079,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:1.949:0.001,0.048,0.95 1|1:1.774:0.01,0.206,0.784 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.005,0.138,0.857 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.101:0.908,0.084,0.008 1|1:1.358:0.1,0.443,0.457 1|1:1.357:0.114,0.414,0.472 1|1:1.69:0.019,0.272,0.709 1|1:1.903:0.002,0.092,0.905 0|0:0:1,0,0 1|1:1.601:0.016,0.368,0.617 1|0:0.731:0.431,0.407,0.162 1|0:1.237:0.144,0.476,0.381 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:1.626:0.032,0.31,0.658 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:1.726:0.021,0.232,0.747 1|1:1.814:0.005,0.176,0.819 1|1:1.966:0.001,0.033,0.966 0|1:0.965:0.27,0.495,0.235 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.919:0.099,0.884,0.018 0|0:0:1,0,0 1|1:1.885:0.002,0.11,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.011,0.182,0.806 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.813:0.24,0.707,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.839,0.156,0.006 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.898:0.006,0.09,0.904 0|0:0.031:0.97,0.029,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0.002:0.998,0.002,0 1|1:1.852:0.003,0.142,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.924:0.002,0.072,0.926 1|1:2:0,0,1 1|1:1.971:0.001,0.028,0.971 1|1:1.568:0.043,0.346,0.611 1|1:1.617:0.077,0.23,0.693 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.035,0.964 1|1:1.986:0,0.013,0.986 1|1:2:0,0,1 1|1:1.826:0.019,0.137,0.845 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.532:0.05,0.367,0.583 0|0:0.283:0.741,0.234,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.931:0.002,0.065,0.933 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.021,0.109,0.87 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.766:0.003,0.229,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19350828 SNP-3.19349338. A G . PASS AR2=0.934;DR2=0.948;AF=0.559 GT:DS:GP 1|1:1.689:0.02,0.272,0.708 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.832:0.006,0.156,0.838 1|1:2:0,0,1 1|1:1.902:0.004,0.09,0.906 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.001,0.081,0.918 1|1:1.928:0.002,0.067,0.931 1|1:1.914:0.003,0.081,0.916 1|1:1.197:0.208,0.387,0.405 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.012,0.167,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.946:0.307,0.44,0.253 0|0:0.874:0.325,0.475,0.2 1|1:1.84:0.007,0.146,0.847 1|1:1.652:0.044,0.261,0.695 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.631:0.037,0.295,0.668 1|1:1.714:0.026,0.235,0.739 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.749:0.021,0.21,0.769 1|1:1.54:0.035,0.391,0.575 1|1:2:0,0,1 0|1:0.94:0.253,0.553,0.194 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.01,0.176,0.814 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.459:0.079,0.382,0.539 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.87:0.008,0.114,0.878 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.894:0.008,0.09,0.902 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.773:0.013,0.202,0.785 1|1:1.857:0.005,0.133,0.862 1|1:2:0,0,1 1|0:0.914:0.291,0.504,0.205 1|1:1.688:0.034,0.243,0.722 1|1:1.807:0,0.193,0.807 1|1:2:0,0,1 1|1:1.604:0.061,0.274,0.665 1|1:1.983:0,0.017,0.983 0|1:1.234:0.159,0.448,0.393 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.934,0.066,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.629:0.028,0.315,0.657 0|0:0:1,0,0 0|0:0.528:0.556,0.359,0.085 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.496:0.126,0.252,0.622 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.799:0.387,0.427,0.186 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.484:0.572,0.372,0.056 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:1.9:0.005,0.09,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.021,0.131,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.569:0.535,0.362,0.103 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.712:0.016,0.257,0.728 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:1.062:0.216,0.507,0.277 0|0:0:1,0,0 1|1:1.915:0.004,0.076,0.919 1|1:1.836:0.006,0.151,0.843 1|1:2:0,0,1 1|1:1.942:0.001,0.057,0.943 0|0:0:1,0,0 1|1:1.532:0.103,0.262,0.635 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.297:0.129,0.446,0.426 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19351341 SNP-3.19349851. C A . PASS AR2=0.991;DR2=0.992;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.847,0.15,0.003 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.018,0.161,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.028:0.973,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:1.995:0,0.005,0.995 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|0:0.957:0.046,0.95,0.004 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:1.963:0.001,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.978:0,0.022,0.978 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0.013:0.987,0.013,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.006,0.072,0.922 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.069,0.002 0|0:0.095:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.066,0.001 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.787:0.393,0.428,0.18 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.086:0.92,0.074,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19352903 SNP-3.19351413. A G . PASS AR2=0.844;DR2=0.884;AF=0.221 GT:DS:GP 0|0:0.433:0.618,0.331,0.051 1|1:2:0,0,1 0|0:0.548:0.524,0.403,0.072 0|0:0.617:0.492,0.4,0.109 1|0:1.113:0.243,0.4,0.357 0|0:0.115:0.888,0.109,0.003 0|1:0.75:0.393,0.465,0.143 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:0.809:0.373,0.445,0.182 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.702:0.456,0.385,0.158 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.311:0.72,0.249,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.744:0.396,0.464,0.14 1|1:2:0,0,1 1|1:1.336:0.193,0.278,0.529 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.833:0.35,0.466,0.183 1|1:2:0,0,1 1|0:0.757:0.383,0.476,0.14 0|0:0:1,0,0 1|1:0.941:0.309,0.441,0.25 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.846:0.365,0.424,0.211 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 1|1:2:0,0,1 1|0:0.634:0.486,0.394,0.12 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.638:0.483,0.396,0.121 0|1:1.059:0.191,0.559,0.25 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.137:0.253,0.358,0.389 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.265:0.753,0.229,0.018 0|0:0.377:0.65,0.323,0.027 0|0:0.143:0.86,0.136,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.945,0.052,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.433:0.613,0.341,0.046 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.332:0.694,0.279,0.027 0|0:0.181:0.827,0.166,0.008 0|0:0.035:0.965,0.034,0.001 1|1:2:0,0,1 1|0:0.7:0.431,0.437,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.587:0.486,0.442,0.072 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.132:0.872,0.124,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 0|0:0.12:0.882,0.117,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.725:0.408,0.459,0.133 0|0:0.553:0.521,0.405,0.074 0|0:0.157:0.845,0.154,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.773,0.209,0.018 0|0:0:1,0,0 1|0:0.67:0.442,0.447,0.112 0|0:0.239:0.78,0.201,0.019 0|1:0.755:0.39,0.464,0.146 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.875,0.125,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.743:0.401,0.455,0.144 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.643:0.428,0.502,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.647:0.462,0.429,0.109 0|0:0.265:0.8,0.134,0.065 1|1:2:0,0,1 0|0:0.226:0.787,0.201,0.012 0|0:0.064:0.938,0.06,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.861,0.137,0.002 1|1:1.842:0.005,0.149,0.846 0|0:0.122:0.885,0.108,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.958,0.04,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.77,0.211,0.019 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.472:0.603,0.323,0.074 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.629:0.071,0.229,0.7 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0.048:0.955,0.042,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.953,0.044,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.834,0.104,0.062 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.294:0.735,0.236,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.597:0.537,0.328,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19353261 SNP-3.19351771. C A . PASS AR2=0.969;DR2=0.974;AF=0.43 GT:DS:GP 0|0:0.083:0.919,0.079,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.112:0.892,0.105,0.004 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 1|1:2:0,0,1 0|0:0.16:0.848,0.145,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.89,0.106,0.004 0|0:0.09:0.913,0.084,0.003 0|0:0.028:0.973,0.027,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.88,0.113,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.879,0.117,0.004 0|1:1.09:0.261,0.388,0.351 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.689:0.438,0.435,0.127 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.859,0.138,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.214:0.795,0.196,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.308:0.016,0.659,0.324 1|1:2:0,0,1 0|0:0.408:0.633,0.327,0.041 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.002,0.066,0.932 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.983,0.017,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.112:0.892,0.105,0.003 0|0:0.047:0.954,0.045,0.001 0|0:0.216:0.795,0.194,0.011 0|0:0.05:0.952,0.046,0.002 1|1:1.963:0.001,0.034,0.965 1|0:1:0,1,0 0|0:0.11:0.893,0.103,0.004 0|0:0:1,0,0 1|1:1.966:0.001,0.032,0.967 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.755:0.279,0.687,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.856,0.137,0.007 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0.124:0.88,0.115,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.103:0.902,0.093,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.849:0.017,0.117,0.866 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0.037:0.965,0.034,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.916:0,0.084,0.916 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.045,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.036,0.963 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.37:0.728,0.174,0.098 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.238:0.78,0.201,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.894:0.362,0.382,0.256 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.93,0.066,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0.115:0.89,0.106,0.004 0|0:0.058:0.943,0.055,0.002 1|1:2:0,0,1 0|0:0:1,0,0 +3 19354321 SNP-3.19352831. C A . PASS AR2=0.952;DR2=0.963;AF=0.297 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.249:0.162,0.427,0.411 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.558:0.062,0.317,0.621 1|1:2:0,0,1 1|1:1.573:0.061,0.305,0.634 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.081:0.921,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.877,0.121,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.929,0.066,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|0:1.384:0.103,0.411,0.486 1|1:1.76:0.011,0.219,0.771 0|0:0.623:0.395,0.587,0.018 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.004,0.17,0.826 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.734:0.332,0.602,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.262:0.153,0.433,0.415 0|1:0.763:0.403,0.431,0.166 0|0:0:1,0,0 1|1:1.897:0.003,0.097,0.9 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.312:0.122,0.444,0.434 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.668:0.019,0.294,0.687 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.001,0.048,0.951 1|1:1.909:0.001,0.09,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.001,0.052,0.947 1|1:1.943:0,0.056,0.944 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.157:0.179,0.485,0.336 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.905,0.09,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.653:0.02,0.306,0.674 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.29:0.144,0.422,0.434 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.929,0.065,0.006 1|1:1.938:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.02,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.285:0.135,0.445,0.42 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.959:0.002,0.037,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.591:0.06,0.289,0.651 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 +3 19354906 SNP-3.19353416. C A . PASS AR2=0.997;DR2=0.998;AF=0.457 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.873,0.126,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.118:0,0.882,0.118 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.594:0.039,0.327,0.633 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19356291 SNP-3.19354801. C A . PASS AR2=0.996;DR2=0.996;AF=0.347 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:1.826:0.007,0.159,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.011,0.236,0.753 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.811:0.01,0.17,0.82 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.272:0.729,0.27,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 19365137 SNP-3.19363647. C A . PASS AR2=0.97;DR2=0.975;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.018,0.203,0.778 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0,0.042,0.958 1|0:1.204:0.15,0.496,0.354 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1.226:0.146,0.481,0.373 1|1:2:0,0,1 1|0:1.324:0.117,0.442,0.441 0|1:1.286:0.129,0.456,0.415 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.222:0.148,0.483,0.37 1|1:1.24:0.15,0.46,0.39 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.012,0.196,0.792 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.181:0.174,0.471,0.355 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.782:0.013,0.192,0.795 1|1:1.964:0.001,0.034,0.965 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.424:0.094,0.387,0.519 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.861:0.006,0.128,0.866 1|1:1.792:0.012,0.185,0.803 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.315:0.113,0.46,0.428 0|0:0:1,0,0 +3 19365516 SNP-3.19364026. A G . PASS AR2=0.987;DR2=0.989;AF=0.516 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:1.855:0.003,0.139,0.858 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.001,0.053,0.946 1|1:1.921:0.001,0.076,0.923 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.838:0.007,0.148,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.882:0.118,0.882,0 0|1:1:0,0.999,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.833:0.008,0.152,0.84 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 0|1:0.931:0.069,0.931,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.883:0.117,0.883,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.836:0.007,0.15,0.843 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.778:0.012,0.197,0.79 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.844:0.006,0.145,0.849 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.001,0.092,0.906 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.993:0.007,0.993,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.003,0.144,0.853 0|0:0:1,0,0 1|1:1.795:0.01,0.184,0.805 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.006,0.183,0.811 1|1:1.86:0.005,0.131,0.864 1|1:1.858:0.005,0.132,0.863 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.835:0.007,0.151,0.842 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.856:0.005,0.135,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.003,0.077,0.92 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19365823 SNP-3.19364333. C A . PASS AR2=0.997;DR2=0.997;AF=0.359 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.843,0.145,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.943:0,0.057,0.943 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.932,0.065,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.98:0,0.019,0.981 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.875,0.099,0.025 0|0:0.034:0.966,0.034,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19366033 SNP-3.19364543. A G . 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C A . PASS AR2=0.967;DR2=0.976;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.119:0.883,0.116,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.051:0.189,0.57,0.241 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.494:0.05,0.406,0.544 0|1:1.324:0.115,0.446,0.439 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.339:0.11,0.441,0.449 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.005,0.123,0.872 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.394:0.094,0.418,0.488 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.285:0.738,0.238,0.023 0|0:0:1,0,0 1|1:1.786:0.011,0.192,0.797 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.338:0.11,0.442,0.448 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.323:0.115,0.446,0.439 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 0|0:0.291:0.733,0.243,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:1.795:0.012,0.181,0.807 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.87:0.306,0.518,0.176 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.108:0.903,0.085,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19368394 SNP-3.19366904. A G . PASS AR2=0.987;DR2=0.989;AF=0.496 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.56:0.049,0.343,0.609 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0.002,0.121,0.877 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.103:0.251,0.395,0.354 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.293:0.738,0.231,0.031 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.869:0.01,0.11,0.88 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.126:0.875,0.123,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.183:0.831,0.155,0.014 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.321:0.7,0.28,0.02 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.86:0.177,0.786,0.037 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:1.996:0,0.004,0.996 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.157:0.845,0.153,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0,0.045,0.955 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19368681 SNP-3.19367191. C A . PASS AR2=0.974;DR2=0.978;AF=0.366 GT:DS:GP 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.643:0.035,0.287,0.678 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.855:0.007,0.132,0.862 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.772,0.216,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.839,0.159,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.749,0.244,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.306:0.736,0.221,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.335:0.666,0.333,0.001 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.335:0.724,0.216,0.059 0|0:0:1,0,0 0|0:0.139:0.861,0.138,0.001 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.007,0.147,0.846 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0.001,0.039,0.96 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.88:0.004,0.112,0.884 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.829:0.008,0.156,0.836 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0.002,0.043,0.955 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.957 1|1:1.895:0.003,0.099,0.898 1|1:2:0,0,1 1|1:1.913:0.006,0.075,0.919 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.096:0.907,0.09,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:1.879:0.004,0.113,0.883 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.8,0.2,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:1.793:0.012,0.183,0.805 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.866:0.005,0.123,0.871 0|0:0:1,0,0 1|1:1.672:0.032,0.264,0.704 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.007,0.149,0.844 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:1.957:0.001,0.042,0.957 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.873:0.005,0.117,0.878 1|1:2:0,0,1 0|0:0.228:0.772,0.228,0 0|0:0.052:0.949,0.049,0.001 0|0:0.001:0.999,0.001,0 1|0:1.063:0.088,0.762,0.15 1|1:2:0,0,1 0|0:0:1,0,0 +3 19368705 SNP-3.19367215. C A . PASS AR2=0.97;DR2=0.976;AF=0.325 GT:DS:GP 0|0:0.002:0.998,0.002,0 1|1:1.854:0.009,0.127,0.864 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.696:0.025,0.253,0.721 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.037,0.274,0.689 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.746:0.018,0.219,0.763 1|1:1.896:0.002,0.099,0.899 1|1:1.878:0.002,0.119,0.88 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.937 1|1:2:0,0,1 1|1:1.744:0.019,0.218,0.763 1|1:1.802:0.009,0.181,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.004,0.071,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.022,0.259,0.719 1|1:1.814:0.003,0.18,0.817 0|0:0:1,0,0 1|1:1.941:0.001,0.057,0.942 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.005,0.159,0.836 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.716:0.019,0.245,0.735 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 1|1:1.966:0.001,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:1.875:0,0.124,0.876 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.015,0.222,0.762 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.906:0.003,0.088,0.909 1|1:1.693:0.01,0.287,0.703 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.575:0.049,0.327,0.624 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.615:0.519,0.348,0.133 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.033,0.967 0|0:0:1,0,0 1|1:1.746:0.014,0.226,0.76 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.033,0.966 1|1:1.765:0.015,0.204,0.78 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.816:0.011,0.161,0.828 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.566:0.06,0.314,0.626 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19369044 SNP-3.19367554. C A . PASS AR2=0.986;DR2=0.989;AF=0.394 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.892,0.108,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.862:0.377,0.383,0.24 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.365:0.642,0.35,0.008 0|0:0:1,0,0 0|0:0.055:0.947,0.051,0.002 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.009,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.24:0.773,0.214,0.013 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:1.985:0,0.014,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.402:0.599,0.399,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.758,0.24,0.002 0|0:0:1,0,0 0|0:0.243:0.773,0.211,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0.072:0.928,0.072,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.617:0.038,0.306,0.655 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.199:0.829,0.143,0.028 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19376452 SNP-3.19374962. C A . PASS AR2=0.982;DR2=0.985;AF=0.435 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.226:0.789,0.196,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.511:0.528,0.434,0.039 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.913,0.081,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.513:0.499,0.489,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.118:0.885,0.111,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.879,0.114,0.007 0|0:0.196:0.811,0.182,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.241:0.777,0.205,0.018 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.879,0.114,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.879:0.329,0.463,0.208 1|0:1:0,1,0 1|0:0.98:0.278,0.464,0.258 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.869:0.278,0.575,0.147 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19382095 SNP-3.19380605. C A . PASS AR2=0.984;DR2=0.988;AF=0.402 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.297:0.725,0.253,0.022 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.262:0.756,0.226,0.018 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.267:0.751,0.231,0.018 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.765,0.22,0.015 0|0:0.115:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.228:0.785,0.201,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.263:0.755,0.228,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.249:0.766,0.219,0.015 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.245:0.768,0.219,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.931,0.068,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.087,0.003 0|0:0.267:0.751,0.231,0.018 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.048,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.719,0.257,0.023 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.83:0,0.17,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19390968 SNP-3.19389478. A G . PASS AR2=0.898;DR2=0.921;AF=0.249 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.308:0.111,0.47,0.419 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.326:0.715,0.243,0.042 1|1:1.289:0.133,0.446,0.422 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.995:0.257,0.49,0.252 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.969:0.242,0.547,0.211 0|0:0:1,0,0 0|1:1.258:0.139,0.464,0.397 0|1:1.135:0.183,0.498,0.318 0|0:0:1,0,0 0|0:0.058:0.946,0.05,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.598:0.6,0.202,0.198 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.679:0.426,0.469,0.105 0|0:0.242:0.775,0.209,0.017 1|1:2:0,0,1 0|0:0.169:0.839,0.153,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.789,0.201,0.01 0|1:0.7:0.396,0.508,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.448:0.581,0.391,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.142:0.166,0.526,0.308 0|0:0.375:0.673,0.279,0.048 0|1:1.007:0.205,0.583,0.212 1|1:2:0,0,1 0|0:0.257:0.757,0.229,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.807,0.183,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.356:0.682,0.279,0.038 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.247:0.137,0.479,0.384 0|0:0.187:0.832,0.149,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.232:0.132,0.503,0.365 0|0:0.21:0.803,0.184,0.013 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.194:0.165,0.476,0.359 0|0:0.5:0.538,0.424,0.038 0|0:0.178:0.829,0.165,0.006 0|0:0.255:0.751,0.243,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.67:0.469,0.393,0.138 1|1:2:0,0,1 1|1:1.415:0.092,0.401,0.507 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.216:0.222,0.341,0.437 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.644:0.421,0.513,0.066 0|0:0:1,0,0 1|0:1.042:0.199,0.56,0.241 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.771,0.214,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.78,0.213,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.232:0.784,0.2,0.016 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.063:0.274,0.389,0.337 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.879,0.12,0.001 1|1:1.443:0.056,0.446,0.498 0|0:0:1,0,0 +3 19404735 SNP-3.19403245. A G . PASS AR2=0.975;DR2=0.979;AF=0.226 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.84:0.334,0.492,0.174 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.057:0.241,0.461,0.298 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.596:0.432,0.54,0.028 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.592:0.028,0.352,0.62 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.039,0.344,0.617 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.814:0.302,0.583,0.116 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 1|1:1.656:0.038,0.268,0.694 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.77:0.366,0.497,0.136 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19404760 SNP-3.19403270. C A . PASS AR2=0.991;DR2=0.994;AF=0.378 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.537:0.524,0.415,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.22:0.795,0.19,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.002 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.932,0.066,0.001 0|0:0.211:0.803,0.184,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.609,0.333,0.058 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.91:0,0.09,0.91 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19405421 SNP-3.19403931. A G . PASS AR2=0.991;DR2=0.992;AF=0.31 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.092:0.909,0.09,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.886,0.108,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.914,0.085,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.837:0.196,0.772,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.886,0.11,0.003 0|0:0:1,0,0 0|0:0.109:0.893,0.104,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.197:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.825,0.166,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.088,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.262:0.745,0.249,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19407854 SNP-3.19406364. C A . PASS AR2=0.996;DR2=0.997;AF=0.371 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.346:0.671,0.311,0.017 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.115:0.892,0.101,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.008,0.142,0.851 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19408391 SNP-3.19406901. A G . PASS AR2=0.912;DR2=0.934;AF=0.326 GT:DS:GP 1|0:0.996:0.227,0.549,0.223 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.63:0.371,0.629,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.584:0.483,0.449,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.998:0.278,0.447,0.276 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.799:0.031,0.138,0.831 1|1:2:0,0,1 1|1:1.92:0.006,0.068,0.926 1|1:1.542:0.039,0.379,0.582 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.71:0.403,0.484,0.113 1|1:1.243:0.174,0.409,0.417 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.7:0.425,0.45,0.125 1|0:1.313:0.127,0.432,0.441 1|1:2:0,0,1 0|1:1.086:0.219,0.476,0.305 0|0:0:1,0,0 1|1:1.146:0.196,0.462,0.342 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:1.844:0.007,0.143,0.851 1|1:2:0,0,1 1|1:1.371:0.09,0.448,0.462 0|0:0.081:0.919,0.08,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.342:0.111,0.435,0.454 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.077:0.196,0.531,0.273 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.237:0.158,0.446,0.395 1|0:0.662:0.433,0.473,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.456:0.069,0.407,0.524 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.666:0.026,0.283,0.692 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.828:0.009,0.154,0.837 0|0:0:1,0,0 0|1:1.221:0.148,0.483,0.369 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.509:0.077,0.337,0.586 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.77:0.02,0.19,0.79 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.005,0.11,0.885 1|1:1.474:0.088,0.351,0.562 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.019,0.172,0.808 1|1:1.662:0.042,0.253,0.704 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.201:0.212,0.376,0.413 1|0:1.049:0.216,0.519,0.265 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.792:0.011,0.186,0.803 1|1:2:0,0,1 1|1:1.391:0.053,0.503,0.444 0|1:1.362:0.046,0.545,0.408 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.029:0.252,0.466,0.281 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.01,0.077,0.913 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.735:0.027,0.212,0.762 1|1:1.635:0.05,0.264,0.685 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.003,0.068,0.929 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19409064 SNP-3.19407574. C A . PASS AR2=0.963;DR2=0.972;AF=0.316 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.845,0.146,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.761:0.017,0.205,0.778 1|1:1.881:0.004,0.11,0.885 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.613:0.007,0.372,0.621 0|1:1.429:0.086,0.398,0.515 1|0:1:0,1,0 1|0:1.434:0.078,0.409,0.513 0|0:0:1,0,0 1|1:1.646:0.029,0.296,0.675 0|1:1.112:0.203,0.481,0.315 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1.306:0.11,0.473,0.416 1|1:2:0,0,1 1|1:1.803:0.007,0.182,0.81 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.069,0.928 1|1:2:0,0,1 1|1:1.768:0.006,0.22,0.774 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.963:0.001,0.035,0.964 1|1:2:0,0,1 1|1:1.958:0,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.647:0.047,0.259,0.694 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.426:0.087,0.4,0.513 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 1|1:1.605:0.042,0.312,0.646 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.872,0.123,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.043,0.956 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.655:0.036,0.274,0.691 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.013,0.153,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.001,0.057,0.941 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.012,0.17,0.819 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.669:0.034,0.264,0.703 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19409221 SNP-3.19407731. C A . PASS AR2=0.995;DR2=0.995;AF=0.472 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.79,0.206,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.863,0.128,0.009 0|0:0:1,0,0 1|1:1.893:0.01,0.088,0.902 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.054,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.896,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.009,0.159,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.875,0.121,0.005 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.892,0.105,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19412162 SNP-3.19410672. C A . PASS AR2=0.997;DR2=0.997;AF=0.476 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.876,0.119,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.812:0,0.188,0.812 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.07:0,0.93,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.037,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.942:0.001,0.055,0.944 1|0:1:0,1,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:1.891:0.004,0.101,0.895 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0.002,0.062,0.936 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19414835 SNP-3.19413345. C A . PASS AR2=0.986;DR2=0.988;AF=0.403 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.251:0.768,0.213,0.019 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.278:0.758,0.205,0.037 0|0:0.34:0.682,0.297,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.854,0.138,0.008 0|0:0:1,0,0 0|0:0.126:0.879,0.115,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.868,0.116,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.916,0.082,0.002 0|0:0.156:0.85,0.143,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.941,0.057,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.047,0 1|1:2:0,0,1 0|0:0.049:0.952,0.046,0.001 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.841,0.152,0.007 1|0:1:0,1,0 0|0:0.253:0.767,0.213,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.058,0.001 0|0:0.054:0.946,0.054,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0.188:0.814,0.183,0.002 0|0:0.251:0.75,0.249,0.001 1|1:2:0,0,1 0|0:0:1,0,0 +3 19415864 SNP-3.19414374. A G . PASS AR2=0.993;DR2=0.994;AF=0.236 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.38:0.005,0.609,0.386 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.003,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|0:0.763:0.242,0.753,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|0:1.152:0.002,0.844,0.154 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.967:0,0.032,0.968 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.924:0.076,0.924,0 0|0:0.107:0.896,0.102,0.002 1|1:2:0,0,1 1|0:0.961:0.068,0.902,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.097:0.903,0.096,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19417157 SNP-3.19415667. C A . PASS AR2=0.975;DR2=0.981;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.72:0.021,0.239,0.74 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.01,0.182,0.808 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.511:0.075,0.338,0.586 1|0:1:0,1,0 1|1:1.621:0.036,0.307,0.657 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.455:0.545,0.455,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.049,0.324,0.627 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.884:0.008,0.1,0.892 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 1|1:1.813:0.008,0.171,0.821 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.059,0.94 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.022:0,0.978,0.022 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.219:0.104,0.573,0.323 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.588:0.046,0.319,0.634 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.717:0.021,0.241,0.738 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.049,0.949 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.743:0.018,0.221,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.746:0.027,0.201,0.773 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.763:0.018,0.201,0.781 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19417344 SNP-3.19415854. C A . PASS AR2=0.956;DR2=0.965;AF=0.399 GT:DS:GP 0|0:0.107:0.895,0.103,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.294:0.727,0.251,0.021 0|0:0.001:0.999,0.001,0 0|0:0.355:0.676,0.293,0.031 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.322:0.704,0.269,0.026 0|0:0.245:0.77,0.214,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.573:0.491,0.446,0.064 0|0:0.211:0.798,0.192,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.3:0.725,0.249,0.026 0|0:0.331:0.698,0.274,0.028 0|0:0.157:0.85,0.142,0.007 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.805,0.185,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.349:0.682,0.286,0.031 0|0:0:1,0,0 0|0:0.25:0.766,0.218,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.872,0.128,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.243:0.769,0.219,0.012 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.487:0.528,0.457,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.903,0.094,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.891,0.109,0 0|0:0:1,0,0 0|0:0.128:0.872,0.128,0 0|0:0.001:0.999,0.001,0 0|0:0.109:0.894,0.104,0.003 0|0:0.136:0.873,0.118,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.922,0.078,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.07:0.93,0.069,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.234:0.781,0.205,0.015 0|0:0.299:0.724,0.253,0.023 0|0:0.283:0.737,0.244,0.02 1|1:2:0,0,1 0|0:0.41:0.627,0.336,0.037 0|0:0.062:0.939,0.06,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.235:0.78,0.205,0.015 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0.27:0.749,0.232,0.019 0|0:0:1,0,0 0|0:0.322:0.704,0.27,0.026 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.949,0.051,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.887,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.336:0.693,0.279,0.029 0|0:0.061:0.94,0.059,0.001 1|1:2:0,0,1 0|0:0.111:0.892,0.104,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.764:0.001,0.234,0.765 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.28:0.739,0.241,0.02 0|0:0.232:0.784,0.201,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.869,0.122,0.009 0|0:0.3:0.729,0.243,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19420407 SNP-3.19418917. A G . PASS AR2=0.988;DR2=0.99;AF=0.258 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.383:0.005,0.607,0.388 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.852:0.246,0.656,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.111:0.889,0.111,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.959,0.041,0 0|1:0.966:0.037,0.961,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.329:0.697,0.277,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.891,0.109,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0.28:0.728,0.263,0.009 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.078:0.924,0.075,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19422085 SNP-3.19420595. A G . PASS AR2=0.984;DR2=0.988;AF=0.215 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.332:0.013,0.643,0.344 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.049,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.847:0.005,0.142,0.852 1|1:2:0,0,1 0|0:0.482:0.589,0.34,0.071 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.779:0.257,0.707,0.036 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.788,0.199,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.864,0.129,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.933:0.002,0.064,0.935 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.489:0.026,0.458,0.516 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19422174 SNP-3.19420684. C A . PASS AR2=0.982;DR2=0.985;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.886:0.004,0.106,0.89 1|1:2:0,0,1 1|1:1.729:0.014,0.243,0.743 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.852:0.007,0.133,0.86 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.063:0.938,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.22:0.782,0.215,0.002 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 1|1:1.913:0.003,0.081,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.778:0.011,0.2,0.789 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.01,0.169,0.821 1|1:2:0,0,1 1|1:1.825:0.009,0.158,0.834 1|1:1.85:0.008,0.135,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.087,0.911 1|1:2:0,0,1 1|1:1.829:0.008,0.155,0.837 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.805:0.009,0.178,0.813 0|0:0:1,0,0 1|1:1.845:0.006,0.143,0.851 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.001,0.075,0.924 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.959:0.001,0.039,0.96 1|1:2:0,0,1 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0.009,0.163,0.828 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.851:0.003,0.143,0.854 0|0:0:1,0,0 1|1:1.859:0.007,0.126,0.867 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.156:0.858,0.129,0.013 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.874:0.004,0.119,0.878 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.942:0.001,0.055,0.943 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.718:0.02,0.242,0.738 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.001,0.088,0.911 0|0:0:1,0,0 +3 19422218 SNP-3.19420728. C A . PASS AR2=0.995;DR2=0.995;AF=0.361 GT:DS:GP 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.069:0.931,0.069,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.921,0.077,0.003 0|0:0.049:0.952,0.048,0.001 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.967,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0.001 0|0:0.211:0.792,0.205,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.977 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.994:0.037,0.933,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.973,0.026,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.035,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.02,0.979 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19422797 SNP-3.19421307. C A . PASS AR2=0.996;DR2=0.996;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.126:0.879,0.117,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.939,0.059,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.913,0.086,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.086,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.811,0.183,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.036:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19425823 SNP-3.19424333. C A . PASS AR2=1;DR2=1;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19425921 SNP-3.19424431. C A . PASS AR2=0.947;DR2=0.963;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.302:0.044,0.61,0.346 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.446:0.076,0.402,0.522 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.178:0.827,0.169,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.582:0.512,0.393,0.095 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.389:0.655,0.302,0.043 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.833,0.156,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.156:0.853,0.139,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.692,0.283,0.026 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.666:0.027,0.279,0.694 1|1:2:0,0,1 0|0:0.091:0.911,0.087,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.234:0.148,0.471,0.381 0|1:1.311:0.122,0.445,0.433 1|1:2:0,0,1 1|0:1.285:0.131,0.454,0.416 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.019,0.239,0.742 1|1:1.466:0.07,0.394,0.536 1|1:1.355:0.096,0.454,0.451 0|0:0:1,0,0 1|1:1.945:0.001,0.053,0.946 0|0:0:1,0,0 1|1:1.886:0.008,0.098,0.894 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.596:0.043,0.317,0.64 0|0:0:1,0,0 0|1:1.385:0.096,0.423,0.481 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.706:0.008,0.277,0.715 1|1:1.868:0.007,0.117,0.876 0|0:0.066:0.936,0.062,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.133:0.872,0.122,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.19:0.819,0.173,0.009 0|0:0.147:0.856,0.142,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.762,0.219,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.118:0.887,0.107,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.28:0.736,0.247,0.017 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.666:0.013,0.309,0.678 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.014:0.327,0.333,0.34 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 +3 19426001 SNP-3.19424511. C A . PASS AR2=0.93;DR2=0.945;AF=0.449 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.286:0.735,0.245,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.526:0.055,0.364,0.581 0|0:0:1,0,0 0|0:0.39:0.649,0.311,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.754:0.018,0.21,0.772 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.484:0.579,0.358,0.063 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.681,0.285,0.034 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.301:0.722,0.256,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.819,0.174,0.006 0|0:0.079:0.923,0.074,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.338:0.695,0.271,0.034 0|0:0.201:0.805,0.189,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.455:0.044,0.457,0.499 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.599:0.041,0.318,0.64 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.851,0.142,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.969:0.162,0.708,0.131 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.848:0.007,0.139,0.855 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.655:0.029,0.286,0.684 1|1:2:0,0,1 1|1:1.72:0.021,0.239,0.741 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.675:0.028,0.269,0.703 1|1:1.774:0.013,0.2,0.787 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.969 1|0:0.937:0.146,0.771,0.083 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.607:0.04,0.313,0.647 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.577:0.041,0.341,0.618 0|1:1.428:0.069,0.433,0.497 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.79:0.018,0.173,0.808 1|1:2:0,0,1 1|1:1.829:0.012,0.147,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.608:0.45,0.492,0.058 1|0:0.853:0.243,0.66,0.097 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0.151:0.856,0.137,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.141:0.193,0.472,0.335 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.319:0.707,0.268,0.026 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.856,0.139,0.005 1|1:1.529:0.056,0.359,0.585 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.877:0.346,0.431,0.223 0|0:0.074:0.927,0.071,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.348:0.683,0.287,0.03 0|0:0:1,0,0 0|1:0.313:0.711,0.264,0.025 0|0:0.362:0.674,0.291,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.746,0.234,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.639:0.041,0.278,0.68 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.018:0.245,0.492,0.263 0|0:0:1,0,0 1|1:1.609:0.04,0.312,0.649 0|0:0.237:0.784,0.196,0.02 0|0:0:1,0,0 0|0:0.265:0.758,0.219,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.27:0.772,0.185,0.043 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.024:0.115,0.746,0.139 1|1:1.732:0.026,0.215,0.759 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.841,0.149,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19426360 SNP-3.19424870. C A . PASS AR2=0.957;DR2=0.966;AF=0.285 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.483:0.586,0.345,0.069 1|1:1.963:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.839:0.001,0.159,0.84 1|1:1.567:0.046,0.34,0.613 0|1:0.728:0.414,0.443,0.143 0|0:0:1,0,0 1|1:1.131:0.186,0.497,0.317 0|1:1.225:0.151,0.473,0.376 1|1:2:0,0,1 1|0:1.042:0.232,0.495,0.274 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.71:0.02,0.249,0.731 0|1:1.232:0.135,0.497,0.368 1|1:1.365:0.094,0.448,0.459 0|0:0.149:0.874,0.103,0.023 1|1:1.918:0.002,0.078,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.953,0.045,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.253:0.137,0.473,0.39 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.394:0.054,0.497,0.448 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.172:0.83,0.169,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0,0.047,0.953 1|1:2:0,0,1 0|1:1.107:0.013,0.868,0.119 1|1:2:0,0,1 1|1:1.841:0.005,0.149,0.846 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.751:0.013,0.223,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.405:0.595,0.405,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.268:0.733,0.267,0.001 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 1|1:1.707:0.038,0.217,0.745 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.376:0.624,0.376,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19426735 SNP-3.19425245. C A . PASS AR2=0.976;DR2=0.98;AF=0.299 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.014,0.157,0.829 0|0:0:1,0,0 0|1:1.525:0.075,0.326,0.599 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.263:0.124,0.489,0.387 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.06:0.233,0.474,0.293 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.549:0.047,0.356,0.597 0|0:0:1,0,0 1|0:1.193:0.161,0.486,0.353 0|0:0:1,0,0 1|1:1.873:0.004,0.118,0.877 0|0:0:1,0,0 1|1:1.089:0.214,0.483,0.303 1|1:2:0,0,1 1|1:1.851:0.002,0.145,0.853 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0,0.053,0.947 1|1:2:0,0,1 1|1:1.972:0.001,0.027,0.973 1|1:2:0,0,1 1|1:1.926:0.001,0.072,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.007,0.12,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.003,0.041,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.039,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.217:0.02,0.742,0.238 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.018,0.174,0.808 1|1:1.911:0.004,0.082,0.915 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19426905 SNP-3.19425415. C A . PASS AR2=0.99;DR2=0.992;AF=0.38 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.749,0.242,0.009 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.974:0,0.025,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.147:0.866,0.12,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.846,0.146,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.913,0.084,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.737,0.24,0.023 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.002,0.083,0.914 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.951:0.001,0.046,0.953 0|0:0.05:0.952,0.047,0.001 1|1:1.948:0.001,0.051,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.131:0.877,0.115,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.895,0.1,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.253:0.751,0.245,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19427164 SNP-3.19425674. A G . PASS AR2=0.941;DR2=0.955;AF=0.49 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.102:0.194,0.511,0.296 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.107:0.16,0.573,0.267 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.625:0.463,0.448,0.088 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.377:0.664,0.294,0.042 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.927,0.071,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.311:0.71,0.269,0.021 0|0:0.247:0.776,0.2,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.022,0.211,0.767 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.666:0.029,0.277,0.694 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.499:0.057,0.386,0.556 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.699:0.026,0.249,0.725 1|1:1.732:0.016,0.236,0.748 1|1:1.416:0.087,0.41,0.503 1|1:1.666:0.024,0.287,0.689 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.362:0.085,0.468,0.447 0|0:0:1,0,0 1|1:1.508:0.052,0.388,0.56 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.449:0.095,0.362,0.544 0|0:0.234:0.767,0.231,0.002 1|1:1.718:0.019,0.244,0.737 1|1:2:0,0,1 1|0:0.744:0.356,0.544,0.1 1|1:2:0,0,1 1|1:1.69:0.019,0.272,0.709 1|1:2:0,0,1 1|1:1.657:0.035,0.274,0.691 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.775:0.012,0.201,0.787 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.098:0.906,0.089,0.004 1|1:2:0,0,1 0|0:0.245:0.771,0.214,0.015 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0.003,0.083,0.914 1|0:0.63:0.478,0.414,0.108 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.73:0.033,0.204,0.763 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.924:0.004,0.069,0.927 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 1|0:1.092:0.21,0.488,0.302 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.132:0.872,0.125,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.893:0.297,0.513,0.19 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.347:0.005,0.642,0.353 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.009,0.146,0.845 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.135:0.872,0.12,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.15:0.856,0.137,0.007 1|1:2:0,0,1 0|0:0.3:0.724,0.251,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.926,0.071,0.003 0|0:0.189:0.822,0.167,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.011,0.167,0.823 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.82:0.01,0.16,0.83 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.211:0.802,0.184,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19427190 SNP-3.19425700. C A . PASS AR2=0.979;DR2=0.982;AF=0.383 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.423:0.594,0.389,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.916,0.082,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.174:0.833,0.16,0.007 0|0:0.106:0.897,0.099,0.004 0|0:0.277:0.747,0.229,0.024 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.07:0.931,0.067,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.195:0.812,0.18,0.008 0|0:0:1,0,0 0|0:0.147:0.857,0.14,0.003 0|0:0:1,0,0 0|0:0.176:0.832,0.159,0.008 0|0:0.117:0.887,0.109,0.004 0|0:0.131:0.874,0.122,0.004 0|0:0.137:0.867,0.13,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.874,0.122,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.882,0.118,0.001 0|0:0:1,0,0 0|0:0.096:0.905,0.093,0.001 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.105:0.037,0.82,0.143 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.713:0.015,0.256,0.729 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0,0.037,0.963 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:1.988:0,0.011,0.988 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.236:0.808,0.148,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.106:0.897,0.1,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.199:0.814,0.173,0.013 0|0:0:1,0,0 0|0:0.16:0.849,0.142,0.009 0|0:0:1,0,0 0|0:0.141:0.866,0.126,0.008 0|0:0.209:0.807,0.177,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.953:0.001,0.045,0.954 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|0:0.059:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.841,0.148,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.97:0,0.03,0.97 0|0:0:1,0,0 +3 19432253 SNP-3.19430763. A G . PASS AR2=0.942;DR2=0.954;AF=0.479 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.842,0.154,0.004 1|1:2:0,0,1 1|1:1.942:0.002,0.054,0.944 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.314:0.133,0.42,0.447 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.921:0.002,0.074,0.924 1|1:2:0,0,1 0|0:0.072:0.93,0.068,0.002 1|1:2:0,0,1 1|1:1.737:0.03,0.203,0.767 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.861:0.004,0.131,0.865 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.006,0.142,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.942:0,0.058,0.942 1|1:1.482:0.075,0.368,0.557 1|1:1.831:0.01,0.15,0.84 1|1:1.751:0.022,0.206,0.772 1|1:1.84:0.009,0.143,0.849 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.585:0.045,0.325,0.63 1|1:1.734:0.017,0.232,0.751 1|0:1.337:0.095,0.473,0.432 1|1:2:0,0,1 1|1:1.581:0.071,0.278,0.651 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.016,0.188,0.795 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:1.968:0,0.031,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.882:0.123,0.873,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.687:0.027,0.258,0.715 1|1:1.639:0.012,0.336,0.652 1|1:2:0,0,1 1|1:1.545:0.081,0.292,0.626 1|1:1.579:0.047,0.327,0.626 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.606:0.042,0.31,0.648 1|1:2:0,0,1 1|1:1.593:0.038,0.33,0.631 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.528:0.066,0.34,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.711:0.026,0.238,0.737 0|0:0.255:0.768,0.21,0.022 1|1:1.595:0.044,0.318,0.638 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.829:0.007,0.156,0.836 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.007,0.992 1|1:2:0,0,1 1|1:1.851:0.008,0.134,0.858 1|1:1.947:0.001,0.051,0.948 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.003,0.044,0.953 1|1:2:0,0,1 0|0:0.197:0.816,0.171,0.013 1|1:1.728:0.015,0.241,0.743 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.798:0.011,0.18,0.809 1|1:1.775:0.02,0.185,0.795 1|1:1.762:0.014,0.211,0.775 1|1:1.624:0.033,0.31,0.657 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.759:0.244,0.753,0.003 0|0:0:1,0,0 1|1:1.849:0.009,0.134,0.858 0|0:0:1,0,0 1|1:1.74:0.009,0.243,0.748 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0,0.066,0.934 1|1:1.954:0,0.046,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.01,0.15,0.841 1|1:1.844:0.008,0.14,0.852 1|1:1.83:0.01,0.15,0.84 1|1:1.847:0.013,0.126,0.861 1|1:1.831:0.01,0.149,0.841 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.016,0.082,0.902 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.832:0.01,0.148,0.842 0|0:0:1,0,0 1|1:1.549:0.046,0.358,0.595 1|1:2:0,0,1 0|0:0.023:0.978,0.022,0 1|1:1.997:0,0.003,0.997 +3 19434788 SNP-3.19433298. A G . PASS AR2=0.949;DR2=0.96;AF=0.296 GT:DS:GP 0|0:0:1,0,0 0|0:0.315:0.727,0.232,0.042 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.932,0.067,0 1|1:2:0,0,1 1|1:1.145:0.167,0.521,0.312 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.831:0.35,0.468,0.182 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.82,0.175,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.031:0.224,0.52,0.255 1|1:2:0,0,1 1|1:1.582:0.043,0.332,0.625 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.663:0.027,0.283,0.69 1|1:2:0,0,1 1|1:1.743:0.014,0.229,0.757 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.801:0.01,0.179,0.811 1|1:2:0,0,1 1|1:1.87:0.005,0.119,0.875 1|1:1.619:0.037,0.307,0.656 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.023,0.195,0.782 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.814:0.01,0.166,0.824 0|0:0:1,0,0 1|1:1.698:0.015,0.272,0.713 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0.015,0.199,0.786 1|1:1.65:0.05,0.249,0.701 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.36:0.671,0.298,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.731:0.016,0.238,0.746 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.104:0.896,0.104,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.004,0.083,0.913 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.561:0.067,0.306,0.628 1|1:1.368:0.12,0.393,0.488 1|1:2:0,0,1 1|1:1.449:0.096,0.358,0.545 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.785:0.015,0.186,0.799 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.812:0.011,0.166,0.823 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.66:0.033,0.273,0.693 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.806:0.011,0.172,0.817 1|1:2:0,0,1 0|0:0.345:0.711,0.233,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.529:0.036,0.398,0.566 0|0:0:1,0,0 +3 19435700 SNP-3.19434210. C A . PASS AR2=0.859;DR2=0.902;AF=0.231 GT:DS:GP 1|0:0.626:0.48,0.413,0.107 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.901:0.328,0.442,0.23 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.357:0.04,0.564,0.396 1|1:2:0,0,1 1|0:0.526:0.515,0.444,0.041 0|0:0.291:0.728,0.254,0.018 0|0:0.446:0.604,0.347,0.05 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.839,0.15,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.865,0.125,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.32:0.701,0.278,0.021 1|1:2:0,0,1 0|1:0.697:0.438,0.426,0.135 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.885:0.34,0.435,0.225 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.587:0.069,0.275,0.656 1|0:1.151:0.271,0.306,0.423 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.637:0.051,0.26,0.689 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.182:0.827,0.165,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.175:0.833,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.868,0.125,0.007 1|1:2:0,0,1 0|0:0.137:0.868,0.127,0.005 0|0:0.08:0.922,0.075,0.002 0|0:0.192:0.817,0.173,0.01 0|0:0:1,0,0 0|0:0.098:0.904,0.094,0.002 0|0:0.105:0.907,0.081,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 1|0:1.187:0.135,0.542,0.323 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.519:0.075,0.331,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.822:0.248,0.683,0.069 0|0:0:1,0,0 1|1:1.33:0.224,0.222,0.554 1|0:0.871:0.343,0.442,0.214 0|0:0.052:0.948,0.051,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.287:0.073,0.566,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.616:0.502,0.381,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.618:0.486,0.41,0.104 1|0:1.357:0.109,0.425,0.466 0|0:0:1,0,0 0|0:0.321:0.701,0.277,0.022 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.736,0.243,0.021 0|0:0:1,0,0 1|0:1.25:0.098,0.554,0.348 0|0:0.446:0.554,0.446,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.472:0.582,0.365,0.053 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.264:0.175,0.385,0.439 0|0:0.633:0.469,0.429,0.102 1|0:0.957:0.234,0.575,0.191 0|1:0.908:0.235,0.622,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.513:0.567,0.353,0.08 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.328:0.184,0.305,0.511 0|0:0.637:0.466,0.431,0.103 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.19:0.827,0.155,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.375:0.057,0.512,0.432 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.239:0.779,0.202,0.018 0|0:0:1,0,0 0|0:0.097:0.907,0.089,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.896,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19435878 SNP-3.19434388. C A . PASS AR2=0.978;DR2=0.983;AF=0.345 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.767:0.013,0.207,0.78 1|1:1.538:0.056,0.35,0.594 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.717:0.02,0.243,0.737 0|0:0.046:0.955,0.045,0.001 0|0:0.066:0.935,0.064,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.938,0.061,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.031,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 1|1:1.942:0.001,0.056,0.943 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:1.884:0.006,0.103,0.891 1|1:1.928:0.001,0.069,0.929 1|1:1.956:0,0.043,0.957 0|0:0:1,0,0 1|1:1.898:0.003,0.095,0.901 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.947:0.001,0.051,0.948 1|1:1.888:0.003,0.106,0.891 1|1:1.942:0.001,0.056,0.943 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.525:0.05,0.374,0.575 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.575:0.045,0.335,0.62 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.917,0.082,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.407:0.096,0.401,0.503 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.098,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19436097 SNP-3.19434607. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 +3 19437591 SNP-3.19436101. C A . PASS AR2=0.995;DR2=0.995;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.96:0.001,0.038,0.961 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0.001,0.032,0.967 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.001,0.09,0.909 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 1|1:2:0,0,1 1|1:1.917:0.001,0.081,0.918 1|1:1.877:0.005,0.112,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.964 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0,0.042,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.958:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.971,0.028,0.001 0|0:0:1,0,0 1|1:1.943:0.002,0.054,0.944 1|1:1.967:0.001,0.031,0.968 1|1:1.683:0.03,0.258,0.713 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.965:0.001,0.033,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.967:0,0.032,0.968 0|0:0:1,0,0 +3 19439640 SNP-3.19438150. C A . PASS AR2=0.965;DR2=0.976;AF=0.311 GT:DS:GP 0|0:0:1,0,0 1|1:1.808:0.014,0.165,0.822 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.299:0.123,0.454,0.422 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.007:0.993,0.007,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.247:0.138,0.478,0.384 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.755:0.019,0.207,0.774 1|0:1:0,1,0 1|1:1.337:0.116,0.431,0.453 0|1:1.524:0.05,0.377,0.573 1|0:1:0,1,0 1|1:1.661:0.022,0.295,0.683 1|1:2:0,0,1 1|1:1.952:0.001,0.047,0.952 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.36:0.105,0.429,0.466 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.869:0.005,0.121,0.874 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.01,0.255,0.735 1|1:2:0,0,1 1|1:1.392:0.096,0.417,0.488 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.946:0.001,0.053,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.002,0.115,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.977 1|1:1.745:0.021,0.214,0.766 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.606:0.552,0.289,0.158 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0.001,0.037,0.962 1|1:1.867:0.006,0.121,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19448247 SNP-3.19446757. C A . PASS AR2=0.931;DR2=0.945;AF=0.276 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.697:0.021,0.26,0.719 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0.112:0.893,0.102,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.03:0.159,0.652,0.189 1|1:1.588:0.035,0.341,0.624 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.898:0.001,0.1,0.899 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.746:0.364,0.525,0.111 0|0:0.738:0.401,0.459,0.139 0|1:1.043:0.205,0.546,0.248 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.008,0.115,0.877 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.69:0.03,0.249,0.721 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.855,0.14,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.109:0.13,0.631,0.239 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.494:0.062,0.381,0.556 0|1:0.691:0.412,0.486,0.103 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.799:0.33,0.541,0.129 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.851:0.005,0.138,0.856 1|1:2:0,0,1 1|1:1.444:0.064,0.429,0.508 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.194:0.126,0.555,0.319 1|1:1.411:0.082,0.424,0.493 1|1:2:0,0,1 0|1:1.498:0.033,0.437,0.531 1|1:1.824:0.014,0.148,0.838 0|0:0:1,0,0 1|1:1.778:0.007,0.208,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.342:0.16,0.339,0.501 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.133:0.205,0.456,0.338 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.584:0.047,0.322,0.631 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.219:0.185,0.411,0.404 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.425:0.089,0.397,0.514 0|0:0.893:0.317,0.474,0.21 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.922,0.075,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0.026,0.196,0.778 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.958:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.026,0.244,0.73 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.735:0.37,0.525,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19450614 SNP-3.19449124. A G . PASS AR2=0.991;DR2=0.993;AF=0.507 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.721:0.013,0.254,0.733 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.013,0.152,0.835 1|1:1.955:0.001,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.003,0.086,0.91 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.007,0.107,0.886 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.102:0.068,0.762,0.17 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 1|1:1.915:0.002,0.081,0.917 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.478:0.032,0.458,0.51 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.853:0.006,0.135,0.859 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0.003,0.054,0.943 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.088:0.913,0.086,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19452826 SNP-3.19451336. C A . PASS AR2=0.994;DR2=0.995;AF=0.373 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.85:0.028,0.094,0.878 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.357:0.657,0.33,0.013 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0.143:0.86,0.137,0.003 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.058,0.941 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.942:0.001,0.057,0.943 1|1:1.954:0,0.045,0.954 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.219:0.784,0.213,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.095,0.003 0|0:0.037:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19452836 SNP-3.19451346. C A . PASS AR2=0.975;DR2=0.979;AF=0.346 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:1.54:0.066,0.329,0.606 1|1:2:0,0,1 1|1:1.804:0.008,0.18,0.812 1|1:2:0,0,1 0|0:0.045:0.956,0.043,0.001 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0.007,0.167,0.826 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0.062:0.939,0.061,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.046:0.955,0.044,0.001 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.066,0.001 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.019,0.201,0.78 1|1:2:0,0,1 1|1:1.753:0.013,0.222,0.766 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.715:0.027,0.231,0.742 1|1:2:0,0,1 1|1:1.72:0.013,0.255,0.732 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.013,0.251,0.736 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:1.949:0,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0.01,0.214,0.776 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.803:0.009,0.179,0.812 1|1:2:0,0,1 1|1:1.855:0.006,0.132,0.862 1|1:2:0,0,1 1|1:1.807:0.009,0.174,0.816 0|0:0.011:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.006,0.139,0.855 1|1:2:0,0,1 1|1:1.96:0,0.04,0.96 1|0:1:0,1,0 1|1:1.726:0.014,0.247,0.74 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.912,0.087,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.103:0.9,0.097,0.003 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.909:0.001,0.089,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.843:0.01,0.138,0.853 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:1.752:0.019,0.209,0.772 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.003,0.076,0.922 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19453291 SNP-3.19451801. C A . PASS AR2=0.947;DR2=0.957;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.469:0.08,0.372,0.548 1|1:1.866:0.005,0.124,0.871 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.776:0.009,0.206,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.758:0.017,0.207,0.775 1|1:1.865:0.004,0.128,0.869 0|1:1.142:0.139,0.58,0.281 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.183:0.126,0.565,0.309 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.697:0.431,0.44,0.128 0|1:1.237:0.083,0.597,0.32 0|1:1.216:0.113,0.557,0.33 1|0:1.346:0.052,0.551,0.397 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.002,0.074,0.924 1|1:1.813:0.011,0.165,0.824 1|1:1.384:0.043,0.529,0.428 0|0:0:1,0,0 1|1:1.778:0.016,0.191,0.793 0|0:0:1,0,0 1|1:1.575:0.057,0.312,0.632 1|1:1.764:0.013,0.21,0.777 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.835:0.007,0.152,0.842 0|0:0:1,0,0 1|1:1.837:0.006,0.152,0.842 1|0:0.716:0.414,0.456,0.13 1|1:1.851:0.007,0.135,0.858 1|1:1.846:0.006,0.143,0.851 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.147:0.129,0.594,0.276 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.755:0.008,0.229,0.763 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.601:0.046,0.307,0.647 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.004,0.106,0.89 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.01,0.199,0.791 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.211:0.075,0.639,0.286 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.004,0.115,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.368:0.061,0.511,0.429 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.59:0.057,0.295,0.648 0|0:0:1,0,0 1|1:1.963:0.001,0.035,0.964 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.012,0.177,0.812 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.775:0.014,0.197,0.789 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.662:0.034,0.271,0.695 0|0:0:1,0,0 +3 19453506 SNP-3.19452016. C A . PASS AR2=0.999;DR2=0.999;AF=0.485 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.023:0.977,0.023,0 0|0:0.065:0.937,0.061,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.059,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19454317 SNP-3.19452827. C A . PASS AR2=0.989;DR2=0.991;AF=0.321 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.003,0.105,0.892 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.955,0.042,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.944:0.001,0.055,0.945 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.2:0.8,0.2,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.001,0.088,0.911 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.932 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.928:0.107,0.858,0.035 1|1:1.586:0.126,0.162,0.712 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.012,0.166,0.822 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.892:0.002,0.104,0.894 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.182:0.044,0.73,0.226 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.818:0.012,0.159,0.83 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19454570 SNP-3.19453080. A G . PASS AR2=0.984;DR2=0.988;AF=0.223 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.012,0.194,0.794 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.717:0.02,0.242,0.737 1|1:1.637:0.038,0.288,0.674 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.045,0.316,0.64 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.537:0.05,0.362,0.588 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.008,0.125,0.867 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.73:0.031,0.208,0.761 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.934:0.002,0.062,0.936 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19458144 SNP-3.19456654. C A . PASS AR2=1;DR2=1;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19458371 SNP-3.19456881. C A . PASS AR2=1;DR2=1;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.016,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19459022 SNP-3.19457532. A G . PASS AR2=0.955;DR2=0.963;AF=0.481 GT:DS:GP 1|1:1.794:0.012,0.183,0.805 0|0:0:1,0,0 1|1:1.858:0.007,0.128,0.865 0|0:0:1,0,0 1|1:1.879:0.003,0.115,0.882 1|1:2:0,0,1 1|1:1.819:0.009,0.164,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.816:0.009,0.165,0.826 1|1:1.775:0.012,0.2,0.788 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.754:0.026,0.194,0.78 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.371:0.088,0.453,0.459 1|1:2:0,0,1 1|1:1.824:0.008,0.16,0.832 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.756:0.019,0.206,0.775 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.01,0.184,0.806 1|1:1.784:0.008,0.2,0.792 1|1:1.873:0.005,0.118,0.877 1|1:1.771:0.012,0.206,0.782 1|1:2:0,0,1 1|1:1.833:0.007,0.153,0.84 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.013,0.16,0.827 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.773:0.014,0.199,0.787 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.172:0.837,0.153,0.01 1|1:2:0,0,1 1|1:1.858:0.006,0.13,0.864 1|1:2:0,0,1 0|0:0.425:0.604,0.368,0.028 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.008,0.134,0.859 1|1:1.914:0.002,0.082,0.916 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.811:0.008,0.173,0.819 1|1:1.778:0.019,0.184,0.797 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.871:0.148,0.832,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.423:0.057,0.463,0.48 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.965:0.06,0.914,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.98,0.019,0.001 0|0:0:1,0,0 1|1:1.786:0.013,0.188,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.159:0.843,0.155,0.002 1|1:1.795:0.012,0.18,0.808 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.014,0.161,0.825 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0,0.034,0.966 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.006,0.124,0.871 1|1:1.909:0.002,0.087,0.911 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:1.866:0.006,0.122,0.872 1|1:1.819:0.008,0.164,0.828 1|1:2:0,0,1 1|1:1.878:0.005,0.112,0.883 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.054:0.948,0.051,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.002,0.065,0.932 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.841:0.006,0.148,0.846 1|1:1.814:0.009,0.167,0.823 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.757:0.024,0.195,0.781 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.007,0.123,0.869 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.774:0.015,0.197,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.034,0.19,0.776 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.806:0.013,0.168,0.819 1|1:1.816:0.013,0.158,0.829 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.59:0.035,0.34,0.625 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.494:0.087,0.333,0.581 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.001,0.088,0.911 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.807:0.013,0.168,0.82 0|0:0:1,0,0 1|1:2:0,0,1 +3 19459428 SNP-3.19457938. C A . PASS AR2=0.999;DR2=0.999;AF=0.33 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.005,0.125,0.87 0|0:0:1,0,0 +3 19459557 SNP-3.19458067. A G . PASS AR2=0.989;DR2=0.991;AF=0.344 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.43:0.594,0.381,0.024 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 1|1:2:0,0,1 0|0:0.356:0.656,0.333,0.012 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.97:0.153,0.724,0.123 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.906,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0.006:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.265:0.735,0.265,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.995:0.005,0.995,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.011,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.011:0.989,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.435:0.627,0.312,0.061 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 +3 19459649 SNP-3.19458159. C A . PASS AR2=0.997;DR2=0.998;AF=0.335 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.019:0.012,0.956,0.032 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1.043:0.004,0.949,0.047 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.457:0.55,0.443,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0,0.062,0.938 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0,0.098,0.902 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19460831 SNP-3.19459341. C A . PASS AR2=0.999;DR2=0.999;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.041:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19461049 SNP-3.19459559. A G . PASS AR2=0.996;DR2=0.997;AF=0.279 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0.055:0.947,0.052,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.919,0.077,0.004 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.857,0.138,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.035:0.004,0.957,0.039 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.067:0.934,0.065,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.889,0.107,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19462836 SNP-3.19461346. C A . PASS AR2=1;DR2=1;AF=0.467 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19463025 SNP-3.19461535. C A . PASS AR2=1;DR2=1;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19463104 SNP-3.19461614. A G . PASS AR2=1;DR2=1;AF=0.284 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19476117 SNP-3.19474627. C A . PASS AR2=1;DR2=1;AF=0.465 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19477391 SNP-3.19475901. A G . PASS AR2=0.999;DR2=0.999;AF=0.263 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19478609 SNP-3.19477119. C A . PASS AR2=0.982;DR2=0.985;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:1.967:0,0.032,0.968 1|1:1.953:0,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.046,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.886,0.11,0.003 0|0:0:1,0,0 0|0:0.124:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.905,0.092,0.004 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.842,0.154,0.004 0|0:0:1,0,0 0|0:0.276:0.754,0.217,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.672:0.523,0.283,0.194 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.903,0.093,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.967:0,0.033,0.967 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.959 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.926:0.002,0.071,0.928 0|0:0.05:0.952,0.046,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0,0.046,0.953 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.917,0.08,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.036,0.964 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.881,0.114,0.004 0|0:0.078:0.924,0.074,0.002 0|0:0.172:0.837,0.155,0.008 0|0:0.13:0.877,0.116,0.007 0|0:0.117:0.887,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.149:0.858,0.135,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.114:0.89,0.105,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.96:0,0.039,0.96 0|0:0:1,0,0 0|0:0.094:0.909,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.963,0.035,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.93,0.064,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.934,0.064,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.932,0.065,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19480097 SNP-3.19478607. C A . PASS AR2=0.995;DR2=0.996;AF=0.393 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.361:0.669,0.301,0.03 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.926,0.073,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.815,0.177,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.127:0.876,0.121,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.928,0.07,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.892,0.102,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.9,0.1,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19482708 SNP-3.19481218. A G . PASS AR2=0.934;DR2=0.954;AF=0.447 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.472:0.039,0.45,0.511 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.457:0.075,0.392,0.532 1|1:1.511:0.045,0.399,0.556 1|1:1.505:0.063,0.37,0.568 1|1:1.559:0.05,0.342,0.609 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.507:0.061,0.371,0.568 1|1:2:0,0,1 1|1:1.44:0.079,0.401,0.52 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.671:0.043,0.243,0.714 1|1:1.504:0.063,0.371,0.566 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.755:0.017,0.212,0.771 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.869:0.005,0.121,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.015,0.208,0.777 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.011,0.19,0.799 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.813:0.008,0.171,0.821 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.5:0.064,0.373,0.563 1|1:2:0,0,1 1|1:1.859:0.006,0.129,0.865 0|0:0:1,0,0 1|1:1.66:0.044,0.253,0.703 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.517:0.06,0.362,0.578 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.543:0.057,0.344,0.599 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.868:0.002,0.128,0.87 1|1:2:0,0,1 1|1:1.502:0.067,0.365,0.569 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.873:0.006,0.115,0.879 1|1:1.845:0.005,0.144,0.851 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.551:0.051,0.347,0.602 0|0:0:1,0,0 1|1:1.732:0.025,0.219,0.757 1|1:2:0,0,1 1|0:1.287:0.112,0.488,0.4 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.807:0.023,0.146,0.83 1|1:1.723:0.039,0.2,0.762 0|0:0:1,0,0 1|1:1.933:0.001,0.064,0.935 1|1:1.424:0.083,0.409,0.508 1|1:1.417:0.086,0.412,0.503 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.502:0.06,0.377,0.562 1|1:2:0,0,1 1|1:1.426:0.083,0.408,0.509 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.196:0.221,0.362,0.417 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19483515 SNP-3.19482025. C A . PASS AR2=0.98;DR2=0.984;AF=0.308 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.004,0.126,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.925:0,0.075,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.91:0.001,0.088,0.911 1|1:2:0,0,1 1|1:1.822:0,0.178,0.822 1|1:1.804:0.001,0.194,0.805 1|0:1:0,1,0 1|1:1.792:0.007,0.195,0.798 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.609:0.045,0.301,0.654 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.277:0.124,0.474,0.401 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.776:0.013,0.199,0.788 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.828:0.008,0.156,0.836 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.039,0.343,0.618 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.004,0.088,0.908 1|1:1.898:0.004,0.094,0.902 1|1:2:0,0,1 1|1:1.814:0.015,0.156,0.829 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.003,0.045,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.004,0.063,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.452:0.087,0.373,0.539 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19483872 SNP-3.19482382. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19483955 SNP-3.19482465. A G . PASS AR2=0.996;DR2=0.997;AF=0.279 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.954:0.082,0.883,0.036 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.371:0.65,0.33,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.211:0.803,0.184,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 +3 19484593 SNP-3.19483103. C A . PASS AR2=0.993;DR2=0.994;AF=0.376 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.039:0.962,0.038,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0.083:0.917,0.083,0 0|0:0.018:0.982,0.018,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0.037:0.963,0.037,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.056:0.946,0.052,0.002 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.029:0.972,0.027,0.001 0|0:0.021:0.979,0.021,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0.001 0|0:0.034:0.967,0.033,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0.006:0.994,0.006,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.085:0.917,0.081,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.345:0.78,0.096,0.125 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.036:0.965,0.034,0.001 0|0:0.028:0.972,0.027,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 +3 19485735 SNP-3.19484245. C A . PASS AR2=0.999;DR2=0.999;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0,0.053,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.96,0.04,0.001 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19486781 SNP-3.19485291. C A . PASS AR2=0.991;DR2=0.994;AF=0.476 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.908,0.09,0.002 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.102:0.901,0.097,0.003 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.854,0.141,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.582:0.015,0.388,0.597 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.685:0,0.314,0.686 0|1:1.551:0.001,0.447,0.552 1|1:2:0,0,1 0|1:1.632:0,0.368,0.632 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0.003,0.135,0.862 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19488301 SNP-3.19486811. A G . PASS AR2=0.997;DR2=0.998;AF=0.533 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.905:0.009,0.077,0.914 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.247:0.034,0.685,0.281 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.822:0,0.178,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19488438 SNP-3.19486948. A G . PASS AR2=0.999;DR2=0.999;AF=0.205 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.115,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.045:0.955,0.044,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19488488 SNP-3.19486998. C A . PASS AR2=0.983;DR2=0.985;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.865:0.005,0.124,0.87 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.008,0.15,0.842 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.754:0.257,0.733,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.878:0.004,0.115,0.881 0|1:1:0,1,0 1|1:1.804:0.011,0.173,0.816 1|0:1.124:0.075,0.726,0.199 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.943:0.001,0.056,0.944 1|1:2:0,0,1 1|1:1.8:0.011,0.178,0.811 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.781:0.012,0.196,0.792 0|0:0:1,0,0 1|1:1.844:0.007,0.142,0.851 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.833:0.007,0.153,0.84 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.818:0.008,0.167,0.825 1|1:1.89:0.003,0.105,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.878:0.003,0.115,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.798:0.01,0.181,0.808 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.011,0.168,0.821 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.005,0.138,0.857 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.844:0.005,0.145,0.849 1|1:1.853:0.007,0.134,0.86 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.836:0.008,0.148,0.844 0|0:0:1,0,0 +3 19490479 SNP-3.19488989. C A . PASS AR2=0.954;DR2=0.962;AF=0.433 GT:DS:GP 0|0:0.104:0.899,0.098,0.003 1|1:2:0,0,1 0|0:0.299:0.745,0.211,0.044 1|1:2:0,0,1 0|0:0.19:0.816,0.178,0.006 0|0:0.088:0.922,0.068,0.01 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.227:0.79,0.194,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.734,0.248,0.017 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.198:0.811,0.179,0.01 0|0:0.189:0.82,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.762,0.216,0.023 0|0:0.409:0.634,0.322,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.606:0.48,0.433,0.087 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.885,0.112,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.959,0.04,0.002 0|0:0.152:0.855,0.137,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.715,0.267,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.844,0.15,0.005 0|0:0.162:0.851,0.135,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.803,0.185,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.995:0.072,0.862,0.066 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0.153:0.872,0.103,0.025 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.957 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.042,0.001 0|0:0:1,0,0 1|0:0.867:0.338,0.457,0.205 0|0:0:1,0,0 0|0:0.319:0.698,0.284,0.017 0|0:0.032:0.969,0.03,0.001 0|0:1.051:0.211,0.527,0.262 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.301:0.731,0.236,0.033 0|0:0.066:0.936,0.063,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.797,0.191,0.012 0|0:0:1,0,0 0|0:0.14:0.867,0.125,0.007 0|0:0.093:0.91,0.087,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.195:0.097,0.611,0.292 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.862,0.131,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.334:0.69,0.286,0.024 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.837,0.154,0.009 0|0:0:1,0,0 0|0:0.293:0.75,0.206,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.899,0.098,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.9,0.096,0.004 0|0:0:1,0,0 0|0:0.189:0.821,0.169,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.65,0.311,0.039 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.399:0.641,0.319,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.403:0.637,0.323,0.04 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.19:0.82,0.17,0.01 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.389:0.65,0.31,0.04 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19491182 SNP-3.19489692. A G . PASS AR2=0.962;DR2=0.972;AF=0.257 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.001 0|0:0:1,0,0 1|1:1.837:0.005,0.153,0.842 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.945,0.051,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0.014,0.271,0.715 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.885,0.115,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.604:0.031,0.333,0.636 1|1:2:0,0,1 1|0:1.181:0.144,0.532,0.325 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|1:1:0,1,0 1|1:1.936:0.001,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:1.678:0.034,0.254,0.712 1|1:1.97:0.001,0.028,0.971 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.575:0.446,0.533,0.021 0|0:0.117:0.888,0.107,0.005 0|0:0.371:0.641,0.347,0.012 0|0:0.526:0.502,0.469,0.028 0|0:0.48:0.529,0.461,0.009 1|0:0.524:0.483,0.509,0.008 0|0:0.417:0.585,0.414,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.223:0.11,0.558,0.332 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.823:0.008,0.162,0.83 0|0:0:1,0,0 0|0:0.105:0.9,0.095,0.005 0|0:0.064:0.937,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.933,0.062,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.989:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0.002,0.073,0.925 1|1:1.885:0.004,0.106,0.89 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.001,0.092,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0.069:0.932,0.068,0.001 1|1:1.982:0,0.018,0.982 0|0:0.025:0.975,0.024,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.002,0.039,0.959 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.885:0.003,0.109,0.888 1|1:2:0,0,1 1|1:1.71:0.019,0.252,0.729 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0.001 0|0:0:1,0,0 1|1:2:0,0,1 +3 19491464 SNP-3.19489974. C A . PASS AR2=1;DR2=1;AF=0.36 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19491625 SNP-3.19490135. C A . PASS AR2=0.913;DR2=0.942;AF=0.324 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.479:0.589,0.344,0.067 1|1:1.899:0.004,0.092,0.903 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.08:0.306,0.309,0.385 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.574:0.517,0.392,0.091 0|1:0.639:0.45,0.46,0.09 1|1:2:0,0,1 0|1:0.862:0.295,0.548,0.157 0|0:0:1,0,0 1|0:0.652:0.467,0.414,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.295:0.739,0.227,0.034 1|1:2:0,0,1 1|0:0.82:0.226,0.729,0.045 1|1:2:0,0,1 1|1:1.664:0.035,0.267,0.698 1|1:1.452:0.068,0.412,0.52 0|0:0:1,0,0 1|0:0.829:0.343,0.485,0.172 1|1:1.947:0,0.053,0.947 1|1:2:0,0,1 1|0:0.627:0.461,0.451,0.088 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.245:0.1,0.555,0.345 1|1:2:0,0,1 0|0:0.526:0.5,0.475,0.025 1|0:0.568:0.531,0.369,0.1 0|0:0:1,0,0 0|0:0.503:0.555,0.388,0.058 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.802:0.351,0.495,0.154 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.815,0.173,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.732:0.427,0.413,0.16 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.553:0.527,0.394,0.08 1|1:1.193:0.263,0.28,0.456 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.449:0.639,0.274,0.088 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.738:0.408,0.445,0.146 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.84,0.151,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.661:0.458,0.423,0.119 0|1:0.812:0.267,0.655,0.078 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.085:0.918,0.078,0.004 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.766:0.388,0.458,0.154 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.595:0.046,0.312,0.642 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.557:0.045,0.354,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.445:0.594,0.366,0.04 1|1:2:0,0,1 +3 19497929 SNP-3.19496439. C A . PASS AR2=0.973;DR2=0.979;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.268:0.751,0.231,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.483:0.546,0.425,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.225:0.788,0.199,0.013 0|0:0.219:0.793,0.195,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.518:0.589,0.304,0.107 0|0:0:1,0,0 0|0:0.114:0.891,0.105,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.124:0.204,0.467,0.329 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.859,0.135,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 0|0:0.142:0.861,0.136,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.091:0.006,0.896,0.098 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.146:0.862,0.13,0.008 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.233:0.779,0.21,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.197:0.809,0.186,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.919,0.071,0.01 0|0:0:1,0,0 1|1:1.289:0.152,0.406,0.441 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.169:0.841,0.149,0.01 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.752:0.305,0.639,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.193:0.819,0.17,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.16:0.846,0.148,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.853,0.142,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.033:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.919:0.233,0.615,0.152 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19508441 SNP-3.19506951. C A . PASS AR2=0.937;DR2=0.953;AF=0.293 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.918,0.075,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.419:0.039,0.503,0.458 1|1:2:0,0,1 1|0:1.296:0.092,0.519,0.389 1|1:1.693:0.002,0.303,0.695 1|0:0.796:0.359,0.487,0.154 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|0:0.803:0.366,0.466,0.168 0|0:0:1,0,0 0|0:0.48:0.582,0.355,0.062 0|0:0.566:0.509,0.415,0.076 0|1:1.158:0.122,0.597,0.28 0|1:1.015:0.186,0.614,0.2 1|0:0.993:0.18,0.646,0.174 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:1.843:0.012,0.134,0.855 0|0:0:1,0,0 0|1:1.414:0.093,0.4,0.507 0|0:0:1,0,0 1|1:1.773:0.015,0.196,0.789 0|0:0:1,0,0 1|1:1.755:0.017,0.211,0.772 1|1:2:0,0,1 0|1:1.499:0.04,0.422,0.539 0|0:0:1,0,0 0|1:1.612:0.025,0.339,0.637 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.32:0.024,0.631,0.344 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.485:0.053,0.409,0.538 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.85:0.002,0.147,0.851 1|1:1.965:0,0.035,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.754:0.004,0.238,0.758 1|1:1.819:0.008,0.165,0.827 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.779:0.013,0.194,0.793 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.917:0.001,0.082,0.917 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.206:0.18,0.433,0.387 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.78:0.015,0.19,0.795 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.289:0.078,0.555,0.367 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:1.333:0.151,0.364,0.485 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.002,0.062,0.937 1|1:1.973:0,0.026,0.974 1|1:1.77:0.063,0.104,0.833 1|1:1.939:0.002,0.058,0.94 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.353:0.117,0.414,0.47 0|0:0:1,0,0 +3 19511582 SNP-3.19510092. A G . PASS AR2=0.883;DR2=0.912;AF=0.207 GT:DS:GP 0|0:0.841:0.338,0.483,0.179 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.88:0.212,0.696,0.092 0|0:0:1,0,0 0|0:0.652:0.464,0.42,0.116 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.687:0.428,0.457,0.115 1|1:2:0,0,1 0|1:0.899:0.282,0.537,0.181 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.296:0.732,0.239,0.028 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.756,0.202,0.042 0|0:0.65:0.449,0.452,0.099 0|0:0.069:0.932,0.067,0.001 0|0:0.5:0.654,0.193,0.153 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.452:0.593,0.362,0.045 1|1:2:0,0,1 0|1:0.477:0.552,0.419,0.029 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.673:0.438,0.451,0.111 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.579:0.515,0.39,0.095 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.802:0.011,0.176,0.813 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.743:0.394,0.468,0.137 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.48:0.561,0.399,0.041 0|0:0.065:0.935,0.065,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.926,0.074,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.752:0.373,0.502,0.125 1|0:1.107:0.214,0.465,0.321 1|1:1.107:0.284,0.326,0.39 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0.001 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.429:0.638,0.296,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.631:0.485,0.399,0.116 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.445:0.584,0.387,0.029 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|1:0.971:0.269,0.49,0.241 1|0:0.497:0.538,0.428,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.634,0.318,0.048 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.096:0.22,0.464,0.316 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.222:0.794,0.191,0.015 0|0:0:1,0,0 0|0:0.285:0.752,0.212,0.037 0|0:0.768:0.388,0.455,0.157 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.697:0.411,0.48,0.109 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.836:0.356,0.451,0.193 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.025:0.247,0.481,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.833:0.003,0.161,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19516921 SNP-3.19515431. C A . PASS AR2=0.94;DR2=0.956;AF=0.376 GT:DS:GP 0|0:0.286:0.736,0.242,0.022 1|1:2:0,0,1 0|0:0.105:0.9,0.095,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.543:0.036,0.385,0.579 0|0:0:1,0,0 0|0:0.48:0.581,0.357,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.795,0.195,0.01 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.846,0.146,0.008 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.597:0.52,0.363,0.117 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.384:0.649,0.317,0.033 0|0:0.077:0.924,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.851,0.141,0.008 0|0:0:1,0,0 0|0:0.488:0.555,0.403,0.043 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.039,0.961 1|1:1.826:0.013,0.148,0.839 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.701:0.026,0.246,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.407:0.059,0.474,0.467 1|1:1.67:0.01,0.309,0.68 1|1:1.846:0.01,0.135,0.855 1|1:1.678:0.034,0.255,0.711 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.652:0.026,0.295,0.678 1|1:2:0,0,1 1|1:1.777:0.015,0.192,0.793 0|1:1.133:0.002,0.862,0.136 1|1:1.965:0.001,0.034,0.966 0|1:1.552:0.021,0.406,0.573 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.389:0.656,0.3,0.045 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0,0.072,0.927 1|1:1.896:0.005,0.095,0.901 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.072:0.932,0.064,0.004 1|1:1.529:0.039,0.392,0.569 1|1:2:0,0,1 1|1:1.635:0.022,0.321,0.657 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.821:0.022,0.135,0.843 1|1:2:0,0,1 1|1:1.884:0.001,0.113,0.885 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.584:0.027,0.362,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.422:0.101,0.376,0.523 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.832:0.008,0.152,0.84 0|0:0:1,0,0 0|0:0.208:0.806,0.179,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.814,0.175,0.011 1|1:1.662:0.045,0.247,0.708 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.809:0.004,0.184,0.812 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.496:0.049,0.407,0.544 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.17:0.842,0.145,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.882,0.11,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.578:0.063,0.295,0.641 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.547:0.076,0.302,0.622 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.808:0.007,0.177,0.816 0|0:0:1,0,0 +3 19517647 SNP-3.19516157. C A . PASS AR2=0.997;DR2=0.997;AF=0.371 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.024:0.977,0.022,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.243:0.758,0.242,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.148:0.857,0.138,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.895,0.102,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19517760 SNP-3.19516270. C A . PASS AR2=0.991;DR2=0.993;AF=0.331 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.538:0.045,0.371,0.583 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.823:0.007,0.163,0.83 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.868:0.003,0.125,0.872 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.795:0.013,0.178,0.808 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.898:0.003,0.097,0.901 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.008,0.164,0.829 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.004,0.118,0.878 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0.009,0.176,0.815 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.961:0.001,0.037,0.962 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.006,0.148,0.846 0|0:0:1,0,0 +3 19518179 SNP-3.19516689. C A . PASS AR2=0.98;DR2=0.986;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.153:0.855,0.137,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.053:0.314,0.318,0.367 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.829:0.009,0.153,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.075,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.119:0.881,0.119,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.703:0.019,0.26,0.722 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.713:0.02,0.247,0.733 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.876:0.002,0.119,0.879 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.668:0.028,0.277,0.696 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.749:0.013,0.224,0.763 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0:1,0,0 0|0:0.138:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.653:0.05,0.248,0.703 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.974,0.025,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19518782 SNP-3.19517292. A G . PASS AR2=0.991;DR2=0.993;AF=0.246 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.009,0.144,0.847 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.703:0.021,0.255,0.724 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.156:0.006,0.832,0.162 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.726:0.018,0.239,0.744 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.871,0.124,0.006 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.733:0.023,0.221,0.756 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19525732 SNP-3.19524242. C A . PASS AR2=0.993;DR2=0.994;AF=0.353 GT:DS:GP 0|0:0:1,0,0 1|1:1.932:0.001,0.065,0.934 0|0:0.009:0.991,0.009,0 1|1:1.836:0.011,0.141,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0.001,0.067,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0.042:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.05:0.95,0.049,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.914:0.002,0.083,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.953:0.001,0.045,0.954 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:1.956:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.899:0.002,0.098,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 1|1:1.927:0.001,0.07,0.929 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.001,0.081,0.918 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.942 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:1.926:0.002,0.07,0.928 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0.001,0.03,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19526547 SNP-3.19525057. A G . PASS AR2=0.973;DR2=0.98;AF=0.466 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.576:0.044,0.335,0.621 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.741:0.018,0.224,0.759 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.625:0.031,0.312,0.656 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.031:0.97,0.029,0.001 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.507:0.032,0.429,0.539 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.775:0.014,0.198,0.788 1|1:1.808:0.009,0.173,0.817 1|1:2:0,0,1 1|1:1.717:0.02,0.243,0.737 1|1:1.69:0.022,0.266,0.712 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.335:0.089,0.487,0.424 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.745:0.019,0.217,0.764 0|0:0:1,0,0 1|1:1.738:0.019,0.223,0.758 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.711:0.026,0.238,0.736 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.677:0.023,0.277,0.7 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.693:0.028,0.251,0.721 1|1:2:0,0,1 1|1:1.645:0.026,0.303,0.671 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.005,0.102,0.893 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.005,0.102,0.892 1|1:2:0,0,1 1|1:1.807:0.01,0.174,0.816 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.682:0.026,0.266,0.708 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19526749 SNP-3.19525259. C A . PASS AR2=0.985;DR2=0.987;AF=0.39 GT:DS:GP 0|0:0.08:0.922,0.076,0.002 1|1:1.941:0.002,0.055,0.943 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.364:0.669,0.297,0.033 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.91,0.088,0.003 0|0:0.047:0.954,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0 0|0:0:1,0,0 0|0:0.06:0.94,0.059,0 0|0:0.041:0.96,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.045,0.953 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.959:0,0.041,0.959 1|1:2:0,0,1 1|1:1.964:0,0.035,0.965 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.905,0.092,0.003 0|0:0:1,0,0 0|0:0.153:0.867,0.113,0.02 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.348:0.683,0.286,0.031 0|0:0.161:0.842,0.155,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.768,0.22,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.116:0.89,0.104,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.826,0.169,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 1|1:2:0,0,1 0|0:0.044:0.956,0.044,0 1|1:2:0,0,1 0|0:0.102:0.903,0.092,0.005 0|0:0.071:0.931,0.067,0.002 0|0:0.006:0.994,0.006,0 0|0:0.098:0.903,0.096,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.751,0.206,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19529334 SNP-3.19527844. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19530150 SNP-3.19528660. C A . PASS AR2=0.996;DR2=0.998;AF=0.471 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.276:0.169,0.387,0.444 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19530426 SNP-3.19528936. C A . PASS AR2=0.994;DR2=0.995;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.097:0.905,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.049,0.001 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.049:0.952,0.048,0.001 0|0:0.04:0.96,0.039,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.962,0.038,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.674:0.358,0.611,0.032 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0.108:0.895,0.102,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.954,0.045,0.002 0|0:0.043:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.104:0.896,0.104,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19531487 SNP-3.19529997. A G . PASS AR2=1;DR2=1;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.98:0.023,0.975,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19531818 SNP-3.19530328. C A . PASS AR2=1;DR2=1;AF=0.467 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.001:0,0.999,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19532303 SNP-3.19530813. A G . PASS AR2=0.999;DR2=1;AF=0.401 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.944:0,0.055,0.944 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19532340 SNP-3.19530850. A G . PASS AR2=0.999;DR2=0.999;AF=0.399 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.299:0,0.701,0.299 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.013:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19532597 SNP-3.19531107. A G . PASS AR2=0.911;DR2=0.938;AF=0.487 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.601:0.043,0.313,0.644 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.357:0.103,0.436,0.46 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.431:0.083,0.403,0.514 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.3:0.126,0.448,0.426 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.323:0.119,0.438,0.443 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.588:0.04,0.331,0.629 0|1:1.504:0.062,0.371,0.567 1|1:1.496:0.064,0.376,0.56 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.379:0.092,0.436,0.471 1|1:1.495:0.064,0.376,0.559 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.582:0.043,0.332,0.625 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.776:0.02,0.184,0.796 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.603:0.038,0.321,0.641 1|1:1.553:0.048,0.351,0.601 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.537:0.052,0.36,0.588 0|0:0:1,0,0 1|1:1.28:0.128,0.464,0.408 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.453:0.078,0.391,0.531 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.46:0.072,0.395,0.532 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.17:0.162,0.506,0.332 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.46:0.075,0.391,0.534 1|1:2:0,0,1 1|1:1.489:0.067,0.377,0.556 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.624:0.037,0.303,0.661 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.33:0.113,0.444,0.443 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.723:0.028,0.222,0.75 1|0:1:0,1,0 1|1:1.501:0.063,0.373,0.564 1|1:1.487:0.074,0.364,0.561 1|1:1.326:0.115,0.445,0.44 1|1:1.33:0.113,0.444,0.443 0|1:1.319:0.117,0.447,0.436 0|1:1:0,1,0 0|1:1.305:0.125,0.444,0.43 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.753:0.023,0.2,0.777 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.021,0.175,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.33:0.113,0.444,0.443 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.599:0.043,0.314,0.643 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19536512 SNP-3.19535022. C A . PASS AR2=0.955;DR2=0.965;AF=0.462 GT:DS:GP 0|0:0.126:0.878,0.118,0.004 1|1:2:0,0,1 0|1:0.814:0.374,0.439,0.188 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.171:0.841,0.146,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.107:0.897,0.098,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.888,0.108,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.904,0.092,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.278:0.741,0.241,0.018 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.061,0.002 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0.13:0.874,0.122,0.004 0|0:0.117:0.887,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.885,0.111,0.004 1|1:2:0,0,1 0|1:1.288:0.139,0.435,0.427 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.117:0.887,0.109,0.004 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.403:0.089,0.419,0.492 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 0|0:0.084:0.917,0.081,0.002 1|1:1.431:0.082,0.405,0.513 1|1:1.454:0.075,0.395,0.529 0|0:0.116:0.888,0.108,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.473:0.053,0.421,0.526 1|1:2:0,0,1 0|1:0.905:0.171,0.753,0.076 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.969:0,0.031,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.073:0.205,0.517,0.278 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.474:0.067,0.392,0.541 0|0:0:1,0,0 1|1:1.093:0.217,0.472,0.311 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.92,0.078,0.002 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.729,0.248,0.022 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.055,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.425:0.083,0.408,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.974,0.026,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.128:0.194,0.483,0.323 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.322:0.112,0.454,0.434 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19538465 SNP-3.19536975. C A . PASS AR2=0.967;DR2=0.975;AF=0.314 GT:DS:GP 0|0:0:1,0,0 1|1:1.825:0.008,0.158,0.834 0|0:0:1,0,0 1|1:1.785:0.012,0.191,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.385:0.091,0.434,0.476 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.691:0.026,0.257,0.717 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.009,0.172,0.819 1|1:2:0,0,1 1|1:1.75:0.016,0.218,0.766 1|1:1.785:0.012,0.191,0.797 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:1.965:0.001,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.828:0.009,0.155,0.836 1|1:1.83:0.009,0.152,0.839 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.799:0.01,0.181,0.809 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.826:0.007,0.16,0.833 1|0:1.467:0.045,0.442,0.513 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.826:0.009,0.156,0.835 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.804:0.009,0.177,0.813 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.003,0.169,0.828 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.828:0.007,0.159,0.834 1|1:1.844:0.005,0.147,0.848 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.006,0.123,0.871 1|1:2:0,0,1 1|1:1.861:0.008,0.123,0.869 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.341:0.127,0.405,0.468 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.822:0.021,0.136,0.843 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.808:0.009,0.175,0.816 0|0:0:1,0,0 1|1:1.554:0.033,0.38,0.587 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.009,0.139,0.852 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.872:0.007,0.114,0.879 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.842:0.008,0.142,0.85 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.83:0.008,0.153,0.838 0|0:0:1,0,0 +3 19543078 SNP-3.19541588. C A . PASS AR2=0.992;DR2=0.993;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.001,0.094,0.905 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:1.908:0.001,0.09,0.909 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.946:0.001,0.052,0.947 0|0:0:1,0,0 1|1:1.935:0.001,0.062,0.937 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0,0.049,0.951 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.003,0.082,0.915 1|1:2:0,0,1 1|1:1.971:0,0.028,0.972 1|1:1.913:0.004,0.078,0.918 1|1:2:0,0,1 1|1:1.871:0.002,0.126,0.872 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.028,0.972 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 1|1:1.637:0.039,0.285,0.676 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.881,0.119,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.953:0.001,0.046,0.953 1|1:1.938:0.001,0.059,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.917:0.001,0.081,0.918 0|0:0:1,0,0 +3 19570108 SNP-3.19568618. C A . PASS AR2=0.962;DR2=0.971;AF=0.366 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.734:0.446,0.375,0.179 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.073:0.93,0.067,0.003 0|0:0.216:0.792,0.201,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.874:0.004,0.117,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.937,0.061,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.107,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.917,0.08,0.003 0|0:0.149:0.857,0.137,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.725:0.015,0.245,0.74 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0.012,0.21,0.778 1|1:2:0,0,1 1|1:1.915:0.003,0.079,0.918 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.529:0.066,0.339,0.595 1|1:2:0,0,1 0|1:0.677:0.362,0.598,0.04 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.089:0.911,0.088,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.772:0.012,0.205,0.783 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.625:0.053,0.27,0.678 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.933:0.282,0.502,0.216 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.779:0.006,0.21,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.382:0.106,0.406,0.488 0|0:0.115:0.891,0.104,0.006 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|1:1.343:0.104,0.448,0.447 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.187:0.818,0.178,0.005 0|0:0:1,0,0 0|0:0.118:0.886,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.854,0.14,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.513:0.075,0.337,0.588 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.958,0.04,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.004,0.102,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.106:0.196,0.503,0.302 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19580263 SNP-3.19578773. A G . PASS AR2=0.945;DR2=0.961;AF=0.454 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.563:0.036,0.365,0.599 1|1:1.681:0.027,0.266,0.707 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.195:0.814,0.178,0.008 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.533:0.057,0.354,0.589 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.615:0.036,0.313,0.651 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.769:0.015,0.201,0.784 1|1:1.271:0.131,0.468,0.401 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.614:0.039,0.308,0.653 1|1:1.722:0.015,0.248,0.737 1|1:2:0,0,1 1|1:1.693:0.027,0.253,0.72 1|1:1.777:0.007,0.21,0.784 1|1:1.428:0.086,0.4,0.514 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.77:0.019,0.193,0.788 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.523:0.059,0.359,0.582 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0.305:0.733,0.23,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.484:0.069,0.378,0.553 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.397:0.094,0.415,0.491 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.574:0.04,0.347,0.613 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.357:0.096,0.451,0.453 1|1:1.954:0,0.046,0.954 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.671:0.015,0.3,0.686 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:1.801:0.003,0.193,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.001,0.068,0.931 1|1:1.964:0,0.036,0.964 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|1:1.798:0.013,0.177,0.81 1|1:1.791:0.013,0.184,0.803 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.654:0.026,0.293,0.681 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.012,0.17,0.817 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.003,0.062,0.936 1|1:1.572:0.044,0.341,0.615 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.557:0.055,0.333,0.612 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.306:0.142,0.411,0.448 0|0:0:1,0,0 1|1:2:0,0,1 +3 19580733 SNP-3.19579243. C A . PASS AR2=0.967;DR2=0.974;AF=0.422 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.275:0.743,0.238,0.018 0|0:0.186:0.824,0.166,0.01 0|0:0.265:0.756,0.223,0.021 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.186:0.822,0.171,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.938,0.062,0 0|0:0:1,0,0 0|0:0.318:0.709,0.265,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.36:0.657,0.327,0.017 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.327:0.706,0.262,0.032 0|0:0.203:0.809,0.179,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.807,0.182,0.011 0|0:0:1,0,0 0|0:0.178:0.831,0.16,0.009 0|0:0:1,0,0 0|0:0.199:0.807,0.186,0.006 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.489:0.572,0.367,0.061 0|0:0:1,0,0 0|0:0.197:0.82,0.163,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.818,0.171,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.813,0.177,0.011 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.855:0.213,0.719,0.068 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.281:0.733,0.253,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.914,0.085,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.399:0.637,0.327,0.036 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.864,0.128,0.008 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.405:0.643,0.308,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.742,0.247,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.113:0.893,0.102,0.005 0|0:0.192:0.819,0.17,0.011 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.05:0.95,0.049,0 0|0:0.021:0.979,0.021,0 0|0:0.323:0.705,0.268,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.16:0.856,0.128,0.016 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19581039 SNP-3.19579549. A G . PASS AR2=0.872;DR2=0.905;AF=0.266 GT:DS:GP 0|1:1.405:0.1,0.395,0.505 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.292:0.131,0.447,0.423 1|0:1.449:0.078,0.395,0.527 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.848:0.291,0.57,0.139 1|0:1.196:0.14,0.524,0.336 0|0:0:1,0,0 0|0:0.246:0.767,0.219,0.014 1|1:2:0,0,1 1|0:1.212:0.105,0.579,0.317 0|0:0.115:0.889,0.107,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.797,0.193,0.011 1|0:0.741:0.349,0.561,0.09 1|0:1.254:0.076,0.594,0.33 1|0:1.044:0.182,0.592,0.226 1|1:2:0,0,1 0|1:0.829:0.242,0.688,0.071 0|0:0.852:0.344,0.46,0.196 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.525:0.061,0.353,0.586 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.308:0.116,0.46,0.424 1|1:2:0,0,1 1|0:0.968:0.291,0.451,0.258 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.512:0.54,0.409,0.052 1|1:2:0,0,1 0|0:0.39:0.642,0.326,0.032 0|0:0:1,0,0 0|0:0.149:0.863,0.125,0.012 0|0:0.622:0.47,0.439,0.092 0|0:0:1,0,0 1|0:0.858:0.314,0.513,0.173 1|1:2:0,0,1 0|1:0.702:0.451,0.397,0.152 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.258:0.75,0.243,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.719:0.505,0.271,0.224 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.168:0.139,0.554,0.307 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.597:0.047,0.31,0.643 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.48:0.07,0.381,0.55 0|0:0:1,0,0 0|1:1.173:0.029,0.768,0.203 0|1:1.323:0.127,0.423,0.45 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.921,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0.08:0.923,0.074,0.003 0|0:0.096:0.907,0.09,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.995:0.141,0.723,0.136 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.727:0.364,0.545,0.091 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.582:0.465,0.488,0.047 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.43:0.607,0.355,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.453:0.072,0.403,0.525 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.565:0.028,0.379,0.593 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.481:0.075,0.369,0.556 0|0:0.256:0.764,0.217,0.019 1|0:0.791:0.281,0.647,0.072 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.226:0.784,0.206,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.215:0.181,0.422,0.397 0|0:0:1,0,0 1|1:1.469:0.052,0.427,0.521 0|0:0:1,0,0 0|0:0.079:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.353:0.107,0.432,0.461 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.066:0.937,0.06,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.47:0.6,0.331,0.07 1|1:2:0,0,1 1|0:1.586:0.048,0.317,0.634 0|0:0:1,0,0 0|0:0.193:0.816,0.175,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19587166 SNP-3.19585676. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19588936 SNP-3.19587446. C A . PASS AR2=0.996;DR2=0.997;AF=0.373 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.086:0.919,0.077,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.95,0.048,0.001 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.003 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.909,0.088,0.003 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19595062 SNP-3.19593572. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19596740 SNP-3.19595250. C A . PASS AR2=1;DR2=1;AF=0.346 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19596996 SNP-3.19595506. A G . PASS AR2=0.996;DR2=0.997;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.16:0.848,0.144,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.846,0.146,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 1|0:1:0,1,0 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.883,0.114,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.009,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19601864 SNP-3.19600374. C A . PASS AR2=0.999;DR2=0.999;AF=0.475 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19605197 SNP-3.19603707. C A . PASS AR2=1;DR2=1;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19605762 SNP-3.19604272. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.963:0,0.037,0.963 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19606910 SNP-3.19605420. C A . PASS AR2=1;DR2=1;AF=0.465 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19607249 SNP-3.19605759. A G . PASS AR2=0.999;DR2=0.999;AF=0.395 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.005,0.103,0.891 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19610709 SNP-3.19609219. C A . PASS AR2=0.996;DR2=0.997;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.109:0.021,0.849,0.13 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:1.825:0.008,0.159,0.833 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.808:0.006,0.179,0.814 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.947 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.974:0,0.026,0.974 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.002,0.059,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.912:0.002,0.083,0.915 0|0:0:1,0,0 +3 19611179 SNP-3.19609689. C A . PASS AR2=0.997;DR2=0.998;AF=0.359 GT:DS:GP 0|0:0.077:0.924,0.075,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.016,0.984 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.882,0.118,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.872,0.125,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.001,0.049,0.95 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.069:0.932,0.068,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 +3 19612474 SNP-3.19610984. C A . PASS AR2=0.979;DR2=0.984;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.701:0.032,0.235,0.733 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.564:0.037,0.361,0.602 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.028,0.971 1|1:2:0,0,1 1|1:1.902:0.003,0.093,0.904 1|1:1.597:0.025,0.352,0.623 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.87:0.012,0.106,0.882 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.648:0.033,0.286,0.681 0|0:0:1,0,0 1|1:1.497:0.062,0.38,0.558 0|0:0:1,0,0 1|1:1.784:0.007,0.201,0.792 1|1:1.836:0.002,0.16,0.838 1|1:1.981:0,0.019,0.981 1|1:1.694:0.024,0.258,0.718 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.603:0.038,0.322,0.64 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.946:0.001,0.053,0.946 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.754:0.025,0.196,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.001,0.11,0.888 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.606:0.041,0.313,0.646 0|0:0:1,0,0 +3 19614779 SNP-3.19613289. A G . PASS AR2=1;DR2=1;AF=0.286 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19615499 SNP-3.19614009. C A . PASS AR2=0.998;DR2=0.998;AF=0.462 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.006,0.178,0.816 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.041:0.96,0.039,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.006,0.188,0.806 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19616179 SNP-3.19614689. A G . PASS AR2=0.955;DR2=0.965;AF=0.318 GT:DS:GP 1|0:1:0,1,0 0|0:0.031:0.969,0.03,0 1|1:2:0,0,1 0|0:0.039:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0.233:0.779,0.208,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.247:0.785,0.182,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.127:0.877,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.096:0.906,0.093,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.329:0.697,0.276,0.027 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0.001,0.074,0.925 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0.245:0.761,0.233,0.006 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.922:0.001,0.075,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:1.919:0.003,0.076,0.921 1|1:2:0,0,1 0|1:0.886:0.362,0.389,0.249 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.964:0,0.035,0.964 0|0:0:1,0,0 0|1:0.521:0.5,0.479,0.021 1|1:1.909:0.003,0.085,0.912 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.407:0.011,0.571,0.418 1|1:1.506:0.018,0.458,0.524 1|1:2:0,0,1 1|1:1.895:0.003,0.098,0.899 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|0:0.853:0.278,0.591,0.131 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.49:0.529,0.452,0.019 0|0:0.075:0.926,0.073,0.001 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 1|0:0.979:0.09,0.841,0.069 0|0:0.287:0.738,0.236,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.356:0.677,0.29,0.033 0|0:0.027:0.973,0.026,0 0|0:0.096:0.905,0.094,0.001 0|0:0:1,0,0 1|0:1.274:0.031,0.664,0.305 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.085,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.304:0.72,0.256,0.024 0|0:0.263:0.752,0.233,0.015 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.499:0.527,0.446,0.026 0|0:0.211:0.83,0.13,0.04 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:0.862:0.29,0.558,0.152 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0,0.036,0.964 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0.158:0.849,0.144,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.029:0.972,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.932,0.061,0.007 0|0:0:1,0,0 1|1:2:0,0,1 +3 19616877 SNP-3.19615387. C A . PASS AR2=0.941;DR2=0.958;AF=0.27 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.489:0.069,0.373,0.558 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.852:0.286,0.576,0.138 0|0:0:1,0,0 0|0:0.725:0.405,0.464,0.131 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.394:0.091,0.424,0.485 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.008:0.165,0.661,0.174 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.007,0.151,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|1:1.294:0.124,0.457,0.418 1|0:1.131:0.193,0.484,0.324 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.285:0.072,0.571,0.357 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.016,0.179,0.804 0|0:0:1,0,0 1|1:1.622:0.008,0.363,0.629 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.458:0.064,0.415,0.522 1|1:1.528:0.056,0.36,0.584 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.96 1|1:2:0,0,1 1|1:1.919:0.001,0.079,0.92 1|1:1.447:0.074,0.404,0.521 1|1:1.84:0.003,0.153,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.509:0.064,0.364,0.572 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.529:0.02,0.431,0.549 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0,0.041,0.959 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.55:0.054,0.341,0.604 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.123:0.308,0.262,0.431 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0.001,0.073,0.926 1|1:2:0,0,1 1|1:1.508:0.065,0.361,0.574 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.685:0.37,0.574,0.056 0|0:0.324:0.706,0.264,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 +3 19616878 SNP-3.19615388. C A . PASS AR2=0.919;DR2=0.94;AF=0.284 GT:DS:GP 0|0:0:1,0,0 1|0:1.328:0.12,0.432,0.448 0|0:0:1,0,0 0|1:1.123:0.218,0.442,0.341 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.387:0.111,0.39,0.499 0|1:1.213:0.109,0.569,0.322 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.49:0.07,0.371,0.56 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.004,0.078,0.918 1|1:1.895:0.004,0.097,0.899 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.525:0.056,0.362,0.582 0|0:1.142:0.2,0.458,0.342 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.083:0.203,0.511,0.286 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.003,0.13,0.867 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.38:0.082,0.457,0.461 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.016:0.246,0.492,0.262 1|1:1.44:0.078,0.404,0.518 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1.217:0.147,0.489,0.364 1|1:1.244:0.145,0.467,0.388 1|1:2:0,0,1 1|1:1.594:0.052,0.302,0.646 1|1:2:0,0,1 1|1:1.93:0,0.069,0.93 1|1:1.924:0.006,0.065,0.93 1|0:1.203:0.163,0.471,0.366 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.039,0.96 1|1:1.603:0.048,0.302,0.65 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.398:0.094,0.413,0.493 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.258:0.144,0.455,0.402 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.007,0.992 1|1:1.236:0.146,0.471,0.383 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.469:0.076,0.379,0.545 0|0:0:1,0,0 1|1:1.512:0.076,0.335,0.589 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.548:0.062,0.328,0.61 0|0:0:1,0,0 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.296:0.145,0.415,0.441 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.399:0.1,0.4,0.5 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.12:0.219,0.442,0.339 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19618127 SNP-3.19616637. A G . PASS AR2=0.901;DR2=0.929;AF=0.53 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.739:0.035,0.192,0.774 0|0:0:1,0,0 1|1:1.656:0.028,0.288,0.684 1|1:1.482:0.066,0.386,0.548 1|1:1.314:0.117,0.453,0.431 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.034,0.296,0.67 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.859:0.004,0.133,0.863 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.923:0.001,0.075,0.924 1|1:1.45:0.088,0.373,0.538 0|1:0.849:0.345,0.461,0.194 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.492:0.067,0.375,0.559 1|0:1.077:0.023,0.877,0.1 0|0:0:1,0,0 0|1:1.091:0.004,0.901,0.095 1|1:1.95:0.001,0.048,0.951 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:1.621:0.029,0.321,0.65 1|1:1.94:0.002,0.057,0.942 1|1:1.611:0.01,0.368,0.621 0|0:0:1,0,0 1|0:1.46:0.071,0.398,0.531 1|1:1.634:0.025,0.316,0.659 1|1:1.687:0.033,0.247,0.72 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|1:2:0,0,1 1|1:1.367:0.105,0.423,0.472 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.41:0.086,0.418,0.496 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.436:0.08,0.404,0.516 1|1:2:0,0,1 1|1:1.875:0.002,0.121,0.877 1|0:1.394:0.092,0.422,0.486 1|1:2:0,0,1 1|1:1.5:0.074,0.352,0.574 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.54:0.047,0.365,0.587 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.412:0.066,0.455,0.479 1|1:1.661:0.036,0.267,0.697 0|0:1.384:0.095,0.426,0.479 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.386:0.095,0.425,0.48 1|1:1.812:0.012,0.165,0.824 1|1:1.963:0.001,0.035,0.964 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.524:0.059,0.358,0.583 1|1:1.387:0.093,0.427,0.48 1|1:1.863:0.007,0.123,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.472:0.069,0.389,0.542 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.941:0,0.059,0.941 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.945:0.001,0.052,0.946 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.422:0.084,0.41,0.506 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.497:0.064,0.374,0.562 1|1:2:0,0,1 1|1:1.902:0.003,0.092,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.513:0.06,0.368,0.572 0|1:1.138:0.163,0.535,0.302 0|1:0.982:0.177,0.664,0.159 0|0:0:1,0,0 1|0:1.727:0.017,0.239,0.744 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.423:0.083,0.411,0.506 0|0:0:1,0,0 1|1:1.702:0.022,0.254,0.724 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.002,0.048,0.95 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.699:0.024,0.252,0.723 1|1:1.95:0.001,0.048,0.951 0|0:0.863:0.317,0.504,0.18 0|0:0:1,0,0 1|1:1.404:0.09,0.417,0.494 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.636:0.012,0.339,0.649 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.908:0.002,0.088,0.91 1|1:2:0,0,1 1|1:1.962:0.001,0.035,0.964 1|1:1.471:0.074,0.381,0.545 1|1:2:0,0,1 0|1:1.461:0.073,0.394,0.534 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.408:0.102,0.387,0.511 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.034,0.965 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.003,0.044,0.953 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19618567 SNP-3.19617077. C A . PASS AR2=0.983;DR2=0.985;AF=0.367 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.127:0.876,0.121,0.003 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.49:0.13,0.25,0.62 0|0:0.179:0.829,0.162,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.221:0.795,0.188,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0.001 0|0:0.004:0.996,0.004,0 0|0:0.126:0.878,0.118,0.004 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.058:0.942,0.058,0 0|0:0.036:0.964,0.035,0.001 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.955,0.045,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.685:0.016,0.283,0.701 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0.067:0.934,0.065,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.801:0.012,0.174,0.814 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.844:0.003,0.149,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.088:0.915,0.082,0.003 1|1:2:0,0,1 1|1:1.956:0.001,0.042,0.957 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.947 1|1:1.925:0.002,0.071,0.927 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.84,0.154,0.007 0|0:0.154:0.851,0.143,0.006 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.194:0.806,0.194,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.929,0.07,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.986,0.014,0 0|0:0:1,0,0 0|0:0.118:0.887,0.108,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.948:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.138:0.885,0.092,0.023 1|1:2:0,0,1 0|0:0:1,0,0 +3 19623746 SNP-3.19622256. C A . PASS AR2=0.952;DR2=0.963;AF=0.315 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 1|1:1.57:0.048,0.334,0.618 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.935,0.063,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.078,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0.062:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.808:0.009,0.175,0.817 1|1:2:0,0,1 1|1:1.909:0.003,0.085,0.912 1|1:1.895:0.004,0.098,0.898 1|0:0.913:0.27,0.547,0.183 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.654:0.04,0.267,0.693 1|1:2:0,0,1 1|0:1.538:0.051,0.361,0.589 0|0:0:1,0,0 1|1:1.54:0.054,0.353,0.593 1|1:1.295:0.119,0.466,0.415 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.506:0.062,0.371,0.567 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.002,0.104,0.894 1|1:1.547:0.048,0.357,0.595 1|1:1.763:0.03,0.176,0.794 0|0:0:1,0,0 1|1:1.543:0.055,0.347,0.598 0|0:0.088:0.915,0.082,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.238:0.773,0.216,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.653:0.028,0.291,0.681 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.764:0.015,0.206,0.779 1|1:2:0,0,1 1|1:1.503:0.063,0.37,0.567 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.728:0.024,0.223,0.753 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.6:0.042,0.315,0.642 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.025,0.278,0.697 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.561:0.05,0.339,0.611 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.521:0.058,0.363,0.579 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.609:0.037,0.317,0.646 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19627672 SNP-3.19626182. A G . PASS AR2=0.886;DR2=0.921;AF=0.264 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.624:0.487,0.402,0.111 0|0:0:1,0,0 0|0:0.495:0.567,0.371,0.062 1|0:0.561:0.51,0.418,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.555:0.523,0.398,0.079 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.784:0.363,0.489,0.148 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.605:0.48,0.435,0.085 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.733,0.25,0.017 0|1:1.028:0.202,0.568,0.23 0|1:1:0.272,0.457,0.271 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.521:0.57,0.34,0.09 0|0:0.425:0.628,0.319,0.053 0|0:0.288:0.733,0.245,0.022 0|0:0:1,0,0 0|0:0.327:0.703,0.267,0.03 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.545:0.531,0.393,0.076 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.152:0.145,0.558,0.297 0|1:1.064:0.19,0.556,0.254 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.945:0.001,0.052,0.946 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0.261:0.753,0.233,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.174:0.85,0.126,0.024 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.407:0.641,0.312,0.048 0|0:0:1,0,0 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 0|0:0.659:0.452,0.437,0.111 0|0:0.438:0.594,0.374,0.032 1|1:1.854:0.003,0.14,0.857 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.782:0.359,0.5,0.141 1|0:0.537:0.532,0.399,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.408:0.062,0.469,0.469 0|1:0.661:0.451,0.438,0.111 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.491:0.029,0.452,0.519 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.661:0.431,0.477,0.092 0|0:0:1,0,0 0|1:0.949:0.283,0.485,0.232 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.869:0.132,0.868,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.44:0.054,0.452,0.494 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.867,0.124,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.194:0.21,0.386,0.404 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.029:0.08,0.81,0.109 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.892:0.005,0.098,0.897 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.921:0.299,0.48,0.22 0|0:0.421:0.623,0.332,0.045 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.821:0.012,0.155,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0,0.058,0.941 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.129:0.28,0.31,0.41 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.836,0.145,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.889,0.11,0.001 1|1:2:0,0,1 +3 19628617 SNP-3.19627127. A G . PASS AR2=0.961;DR2=0.968;AF=0.229 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.66:0.015,0.31,0.675 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.003,0.092,0.905 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.159:0.847,0.147,0.006 1|1:2:0,0,1 0|1:1.314:0.086,0.514,0.4 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.11:0.893,0.105,0.003 0|0:0:1,0,0 0|0:0.083:0.926,0.066,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.033:0.968,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.071,0.001 0|0:0.206:0.824,0.147,0.029 0|0:0:1,0,0 0|0:0.216:0.791,0.202,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.231:0.06,0.648,0.292 0|0:0:1,0,0 0|0:0.326:0.684,0.306,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.274:0.751,0.224,0.025 0|0:0:1,0,0 0|0:0.082:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.845,0.148,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.829,0.162,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.831,0.161,0.008 0|0:0:1,0,0 0|0:0.169:0.838,0.155,0.007 0|0:0.185:0.824,0.167,0.009 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0.18:0.829,0.163,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.096:0.907,0.089,0.003 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.819:0.007,0.168,0.826 1|1:1.711:0.024,0.24,0.736 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.166:0.841,0.152,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.092:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.307:0.704,0.286,0.011 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.874,0.121,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.895,0.103,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.386:0.665,0.283,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19629736 SNP-3.19628246. C A . PASS AR2=0.939;DR2=0.954;AF=0.434 GT:DS:GP 0|0:0.33:0.698,0.275,0.028 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.327:0.699,0.276,0.025 0|1:1:0,1,0 0|0:0.529:0.525,0.421,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.255:0.762,0.221,0.017 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.203:0.807,0.182,0.01 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.258:0.763,0.215,0.022 0|0:0.256:0.76,0.224,0.016 0|1:1:0,1,0 0|0:0.216:0.796,0.192,0.012 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.062:0.94,0.059,0.002 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.312:0.697,0.294,0.009 0|0:0:1,0,0 0|1:0.635:0.446,0.473,0.081 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.561:0.504,0.431,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.39:0.65,0.31,0.04 0|0:0.47:0.585,0.36,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.309:0.715,0.261,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.936:0.001,0.061,0.937 1|1:1.843:0.007,0.142,0.85 1|1:2:0,0,1 1|1:1.706:0.021,0.252,0.727 1|1:1.866:0.004,0.125,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.864:0.002,0.132,0.866 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.38:0.655,0.31,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.205:0.805,0.184,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.674:0.021,0.283,0.696 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.171:0.831,0.167,0.002 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.32:0.706,0.268,0.026 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.718,0.258,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.499:0.554,0.393,0.053 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.33:0.697,0.275,0.028 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.812:0.011,0.166,0.823 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.301:0.721,0.257,0.022 0|0:0:1,0,0 0|0:0.378:0.641,0.34,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.33:0.697,0.275,0.028 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.782,0.209,0.009 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.327:0.7,0.273,0.027 0|0:0:1,0,0 0|0:0.254:0.756,0.234,0.01 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.109:0.906,0.079,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.23:0.784,0.202,0.014 0|0:0:1,0,0 1|0:0.794:0.36,0.486,0.154 0|0:0.32:0.706,0.267,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.819,0.171,0.01 1|1:2:0,0,1 0|0:0.16:0.847,0.147,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.261:0.759,0.22,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 +3 19630493 SNP-3.19629003. A G . PASS AR2=1;DR2=1;AF=0.284 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19630519 SNP-3.19629029. C A . PASS AR2=0.988;DR2=0.991;AF=0.327 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.78:0.012,0.195,0.792 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.933:0.002,0.064,0.934 1|1:2:0,0,1 1|1:1.93:0.002,0.067,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.002,0.058,0.94 0|0:0:1,0,0 1|1:1.814:0.009,0.169,0.823 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.903:0.003,0.092,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.006,0.145,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.708:0.005,0.283,0.713 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.41:0.138,0.313,0.548 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.936:0,0.064,0.936 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.003,0.072,0.925 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.79:0.024,0.161,0.814 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19630572 SNP-3.19629082. C A . PASS AR2=0.993;DR2=0.994;AF=0.471 GT:DS:GP 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.991:0,0.008,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.042:0.958,0.042,0 0|0:0.188:0.814,0.184,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.845:0.167,0.82,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.88,0.119,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.349:0.001,0.649,0.35 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.957,0.043,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.013,0.987 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.179:0.825,0.17,0.005 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19631305 SNP-3.19629815. C A . PASS AR2=0.986;DR2=0.99;AF=0.413 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.011:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.902:0.002,0.095,0.903 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.862:0.003,0.131,0.865 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.49:0.565,0.379,0.056 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.492:0.57,0.369,0.061 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.398:0.641,0.319,0.04 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.075:0.925,0.075,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.043,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.476:0.59,0.343,0.067 1|1:2:0,0,1 1|1:1.936:0.002,0.061,0.937 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.518:0.52,0.442,0.038 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 19632687 SNP-3.19631197. C A . PASS AR2=0.997;DR2=0.997;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.962:0,0.037,0.963 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:1.98:0,0.02,0.98 0|0:0:1,0,0 0|0:0.107:0.893,0.107,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.039,0.961 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.18:0.82,0.18,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.02,0.98 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.954:0.001,0.045,0.955 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.963:0,0.036,0.963 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.028,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19632711 SNP-3.19631221. A G . PASS AR2=0.987;DR2=0.99;AF=0.229 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.066:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.925,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.93,0.068,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.014,0.204,0.781 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.008,0.161,0.83 0|0:0:1,0,0 1|1:1.752:0.016,0.217,0.768 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.602:0.048,0.303,0.649 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.65:0.041,0.269,0.69 1|1:1.757:0.016,0.21,0.773 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19636067 SNP-3.19634577. C A . PASS AR2=0.953;DR2=0.965;AF=0.309 GT:DS:GP 0|0:0:1,0,0 1|1:1.531:0.059,0.351,0.59 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.564:0.046,0.343,0.61 1|1:1.587:0.046,0.321,0.633 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.602:0.042,0.314,0.644 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.89:0.008,0.094,0.898 1|1:2:0,0,1 1|1:1.601:0.037,0.325,0.638 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.835:0.013,0.139,0.848 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.749:0.016,0.218,0.765 1|1:1.593:0.046,0.315,0.639 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.713:0.013,0.261,0.726 0|0:0:1,0,0 1|1:1.577:0.045,0.333,0.622 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.88:0.002,0.116,0.882 1|1:2:0,0,1 1|0:1.596:0.04,0.325,0.635 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.008,0.089,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.558:0.05,0.342,0.608 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.956:0.001,0.042,0.957 1|0:1.541:0.054,0.352,0.594 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.636:0.032,0.301,0.668 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.485:0.069,0.377,0.554 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.623:0.033,0.311,0.656 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.861:0.001,0.137,0.862 1|1:2:0,0,1 1|1:1.535:0.058,0.35,0.592 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.566:0.053,0.328,0.619 0|0:0:1,0,0 1|1:1.515:0.062,0.361,0.577 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.68:0.025,0.27,0.705 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.61:0.034,0.323,0.643 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.768:0.019,0.194,0.787 0|0:0:1,0,0 +3 19638983 SNP-3.19637493. C A . PASS AR2=0.994;DR2=0.995;AF=0.38 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.188:0.821,0.17,0.009 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0.148:0.857,0.137,0.005 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.065:0.937,0.062,0.002 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0.19:0.82,0.17,0.01 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.027:0.973,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.151:0.856,0.137,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.182:0.826,0.165,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19643016 SNP-3.19641526. C A . PASS AR2=0.921;DR2=0.94;AF=0.285 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.753:0.016,0.215,0.769 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.453:0.078,0.391,0.531 1|1:1.255:0.141,0.463,0.396 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.271:0.136,0.457,0.407 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.849,0.147,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.691,0.307,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1.284:0.06,0.595,0.344 1|1:2:0,0,1 1|1:1.409:0.08,0.43,0.49 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.679:0.028,0.266,0.707 0|1:1:0,1,0 0|1:1.161:0.171,0.496,0.332 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.74:0.016,0.227,0.757 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.034:0.967,0.032,0.001 0|1:1.027:0.24,0.493,0.267 1|1:1.311:0.101,0.486,0.413 1|1:1.375:0.086,0.453,0.461 1|0:1.172:0.153,0.521,0.325 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.105:0.193,0.508,0.299 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.849:0.001,0.149,0.85 1|1:1.603:0.063,0.271,0.666 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.14:0.187,0.486,0.327 1|0:1.221:0.146,0.488,0.367 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.236:0.172,0.421,0.408 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.584:0.061,0.294,0.645 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0.001,0.079,0.92 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.181:0.17,0.479,0.351 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.337:0.134,0.396,0.47 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.021,0.261,0.718 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.096:0.203,0.498,0.299 1|1:1.036:0.323,0.319,0.358 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19652068 SNP-3.19650578. A G . PASS AR2=0.908;DR2=0.929;AF=0.425 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.475:0.058,0.41,0.532 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.725:0.017,0.24,0.743 1|1:1.729:0.02,0.231,0.749 1|0:1.27:0.12,0.49,0.39 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.769:0.014,0.204,0.782 1|1:1.412:0.091,0.406,0.503 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.697:0.024,0.255,0.721 1|1:1.796:0.009,0.185,0.805 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.357:0.087,0.469,0.444 0|1:1.515:0.037,0.411,0.552 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.685:0.025,0.265,0.71 0|0:0:1,0,0 0|1:1.252:0.124,0.5,0.376 1|1:1.996:0,0.004,0.996 1|1:1.858:0.004,0.133,0.863 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.846:0.154,0.846,0 1|1:1.493:0.065,0.377,0.558 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.467:0.073,0.388,0.54 0|1:0.858:0.352,0.439,0.209 1|1:1.632:0.04,0.288,0.672 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.263:0.121,0.495,0.384 0|1:1.138:0.097,0.667,0.235 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.957:0.001,0.042,0.958 1|1:2:0,0,1 1|1:1.881:0.003,0.113,0.884 1|1:1.479:0.065,0.391,0.544 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.818:0.011,0.161,0.828 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.92:0.002,0.077,0.921 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.822:0.262,0.655,0.083 1|1:2:0,0,1 1|1:1.499:0.063,0.375,0.562 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.432:0.083,0.402,0.515 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.782:0.308,0.602,0.09 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.46:0.074,0.391,0.534 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.238:0.128,0.505,0.366 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.964:0.001,0.035,0.965 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.663:0.03,0.278,0.692 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.682:0.026,0.266,0.708 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.32:0.119,0.441,0.44 1|1:1.486:0.029,0.457,0.515 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|1:1.729:0.012,0.247,0.741 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.602:0.015,0.368,0.617 1|1:1.664:0.029,0.277,0.693 1|1:1.717:0.022,0.239,0.739 1|1:1.564:0.068,0.3,0.632 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.645:0.026,0.302,0.671 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.459:0.075,0.391,0.534 1|1:1.76:0.016,0.208,0.776 1|1:1.799:0.009,0.182,0.809 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.672:0.017,0.293,0.69 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.892:0.005,0.098,0.897 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.182:0.179,0.46,0.361 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.5:0.062,0.377,0.561 1|1:2:0,0,1 1|1:1.717:0.022,0.239,0.739 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.143:0.182,0.492,0.325 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.57:0.051,0.329,0.621 1|1:1.909:0.003,0.086,0.911 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19654407 SNP-3.19652917. C A . PASS AR2=0.978;DR2=0.982;AF=0.361 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.831:0.007,0.154,0.839 1|1:2:0,0,1 0|0:0.068:0.933,0.065,0.001 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 0|0:0.127:0.878,0.117,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.075:0.926,0.072,0.001 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.898,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.885,0.111,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.102:0.901,0.096,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.844,0.151,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.825,0.167,0.009 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.124:0.88,0.116,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.585:0.044,0.328,0.628 1|1:2:0,0,1 1|1:1.935:0.002,0.061,0.937 1|0:1:0,1,0 1|1:1.69:0.025,0.26,0.715 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0.003,0.06,0.938 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.71:0.02,0.25,0.73 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.637:0.019,0.325,0.656 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0.001,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.145:0.861,0.134,0.005 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.102:0.901,0.095,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.088:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.887,0.109,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.941,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.117:0.886,0.111,0.003 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.922:0.003,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.24:0.776,0.208,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19654713 SNP-3.19653223. C A . PASS AR2=1;DR2=1;AF=0.36 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19656074 SNP-3.19654584. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19656332 SNP-3.19654842. C A . PASS AR2=0.996;DR2=0.997;AF=0.377 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.036,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.939,0.059,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0.088:0.914,0.084,0.002 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.926,0.073,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.061,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.166:0.839,0.155,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.021:0.008,0.963,0.029 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.001 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19656379 SNP-3.19654889. C A . PASS AR2=1;DR2=1;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19657351 SNP-3.19655861. C A . PASS AR2=0.902;DR2=0.923;AF=0.345 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.603:0.037,0.322,0.64 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.802:0.37,0.458,0.172 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.536:0.533,0.399,0.069 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.641:0.031,0.297,0.672 1|1:2:0,0,1 1|0:1.51:0.052,0.387,0.561 1|1:1.63:0.035,0.299,0.666 1|0:1.23:0.161,0.449,0.39 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.837:0.273,0.617,0.11 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.758:0.38,0.482,0.138 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.858:0.299,0.545,0.156 1|1:1.703:0.024,0.248,0.728 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.082:0.222,0.475,0.303 0|0:0:1,0,0 0|0:0.234:0.782,0.203,0.015 0|0:0.146:0.863,0.128,0.009 0|0:0:1,0,0 1|0:0.838:0.289,0.584,0.127 0|0:0.515:0.58,0.325,0.095 1|0:1.013:0.227,0.533,0.24 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.245:0.77,0.215,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.774,0.215,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.826,0.164,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.906,0.09,0.004 0|0:0.079:0.924,0.073,0.003 0|0:0:1,0,0 1|0:0.408:0.599,0.393,0.008 0|0:0.232:0.782,0.203,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.706:0.408,0.478,0.114 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.756:0.395,0.455,0.151 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.182:0.825,0.168,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.871,0.121,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.969:0.266,0.498,0.236 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.441:0.584,0.39,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.156:0.852,0.14,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.549:0.046,0.36,0.594 0|0:0:1,0,0 0|1:0.799:0.306,0.588,0.106 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.114:0.891,0.104,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.573:0.038,0.351,0.611 1|1:2:0,0,1 1|1:1.641:0.033,0.294,0.674 1|1:1.521:0.068,0.344,0.588 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.921,0.077,0.002 0|0:0.57:0.509,0.412,0.079 0|0:0.147:0.86,0.132,0.008 1|1:2:0,0,1 0|0:0.311:0.712,0.264,0.023 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.873:0.318,0.49,0.192 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.651:0.031,0.287,0.682 0|0:0:1,0,0 1|1:1.418:0.094,0.394,0.512 1|1:1.423:0.13,0.317,0.553 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.791,0.191,0.018 1|1:1.641:0.033,0.294,0.674 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.131:0.877,0.116,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0.001,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.583:0.511,0.396,0.093 0|0:0:1,0,0 0|1:0.852:0.331,0.485,0.183 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.781,0.204,0.015 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.744:0.025,0.207,0.768 0|0:0:1,0,0 0|0:0.441:0.578,0.402,0.019 +3 19664349 SNP-3.19662859. A G . PASS AR2=0.989;DR2=0.991;AF=0.205 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.143:0.861,0.134,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.739:0.018,0.225,0.757 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.148,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.299:0.72,0.26,0.02 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.785,0.202,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.846:0.008,0.137,0.854 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.012,0.169,0.819 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19665188 SNP-3.19663698. C A . PASS AR2=0.96;DR2=0.968;AF=0.413 GT:DS:GP 0|0:0.398:0.647,0.308,0.045 1|1:2:0,0,1 0|0:0.424:0.596,0.384,0.02 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.269:0.746,0.239,0.015 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.293:0.728,0.25,0.022 0|0:0:1,0,0 0|0:0.254:0.76,0.227,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.903:0.003,0.092,0.905 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.806:0.006,0.181,0.812 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.344:0.69,0.275,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.286:0.735,0.245,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.734,0.246,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.999,0.001,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.219:0.793,0.196,0.012 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.843,0.148,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.225:0.787,0.201,0.012 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.26:0.757,0.226,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.891:0.003,0.103,0.894 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.005,0.139,0.856 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.899:0.002,0.096,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.003,0.078,0.919 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0.177:0.833,0.158,0.01 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0.261:0.755,0.23,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.29:0.731,0.248,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.279:0.741,0.24,0.019 0|0:0.269:0.749,0.233,0.018 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.878,0.119,0.002 1|1:2:0,0,1 0|0:0.192:0.814,0.18,0.006 0|0:0.006:0.994,0.006,0 0|0:0.107:0.896,0.101,0.003 1|1:1.872:0.004,0.12,0.876 0|0:0.214:0.796,0.193,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.262:0.755,0.228,0.017 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.004,0.114,0.882 0|0:0.091:0.913,0.084,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.004,0.107,0.89 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.95:0.002,0.045,0.953 0|0:0:1,0,0 1|1:1.842:0.007,0.143,0.849 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.251:0.766,0.217,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.765,0.218,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.913:0.001,0.085,0.914 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.539:0.55,0.361,0.089 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.954,0.045,0 +3 19665222 SNP-3.19663732. C A . PASS AR2=0.995;DR2=0.996;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.114:0.89,0.107,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.911,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.852,0.141,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.047,0.002 0|0:0.152:0.855,0.139,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.917,0.08,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.829,0.165,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.169:0.839,0.154,0.007 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.026:0.975,0.024,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19667063 SNP-3.19665573. C A . PASS AR2=0.931;DR2=0.942;AF=0.263 GT:DS:GP 0|0:0:1,0,0 1|0:0.618:0.484,0.415,0.102 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.814:0.338,0.509,0.152 0|0:1.014:0.243,0.499,0.258 1|0:0.758:0.361,0.52,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.031:0.246,0.476,0.277 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.751:0.358,0.532,0.109 0|0:0:1,0,0 0|0:0.013:0.987,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.881:0.124,0.872,0.004 0|0:0:1,0,0 0|1:0.602:0.399,0.601,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.123:0.879,0.118,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.977:0,0.022,0.977 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.404:0.634,0.328,0.038 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.723,0.251,0.026 1|1:2:0,0,1 1|1:1.981:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.511:0.012,0.464,0.523 1|0:0.712:0.399,0.491,0.11 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.968:0.243,0.547,0.21 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.769:0.326,0.58,0.094 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.785:0.004,0.207,0.789 1|1:1.342:0.132,0.394,0.474 0|1:1.066:0.199,0.535,0.265 1|0:1.086:0.254,0.405,0.34 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.091:0.915,0.08,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.924:0.263,0.55,0.187 1|1:1.621:0.031,0.317,0.652 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.779:0.002,0.217,0.781 1|1:1.981:0,0.019,0.981 1|0:1.187:0.171,0.472,0.358 1|1:1.124:0.241,0.394,0.365 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.906:0.302,0.489,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.231:0.058,0.652,0.289 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.001,0.103,0.896 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.92:0,0.079,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.801:0.025,0.149,0.826 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.303:0.761,0.175,0.064 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 19667335 SNP-3.19665845. A G . PASS AR2=0.986;DR2=0.989;AF=0.244 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.72:0.02,0.24,0.74 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.902,0.094,0.003 0|0:0.102:0.899,0.1,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.79,0.194,0.016 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|0:1.316:0.013,0.659,0.329 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.697:0.062,0.179,0.759 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.389:0.632,0.347,0.021 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.981:0,0.019,0.981 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.089:0.914,0.083,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.785:0.01,0.195,0.795 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19667669 SNP-3.19666179. C A . PASS AR2=0.997;DR2=0.997;AF=0.369 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.93,0.069,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.885,0.109,0.006 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.15:0.859,0.133,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.118:0.885,0.112,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19668515 SNP-3.19667025. A G . PASS AR2=0.966;DR2=0.973;AF=0.256 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.103:0.897,0.102,0 1|1:2:0,0,1 0|0:0.042:0.959,0.041,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.07:0.931,0.068,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.062,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.752:0.019,0.211,0.771 1|1:1.621:0.026,0.326,0.648 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.427:0.073,0.426,0.501 1|1:1.708:0.06,0.172,0.768 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:1.698:0.024,0.253,0.722 0|0:0.057:0.943,0.057,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.902:0.242,0.614,0.144 1|1:1.907:0.001,0.092,0.908 1|0:1.419:0.08,0.421,0.499 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.028,0.231,0.741 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.941,0.058,0.001 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.002 0|0:0:1,0,0 0|0:0.067:0.933,0.066,0.001 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.007,0.17,0.822 1|1:1.976:0,0.024,0.976 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.675:0.024,0.277,0.699 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.946,0.053,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.566:0.073,0.287,0.639 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.947,0.049,0.004 1|1:1.56:0.05,0.341,0.609 1|1:2:0,0,1 1|1:1.688:0.028,0.256,0.716 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19671820 SNP-3.19670330. A G . PASS AR2=0.937;DR2=0.952;AF=0.469 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.659:0.45,0.442,0.108 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.862:0.312,0.513,0.174 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.71:0.417,0.457,0.126 0|1:1:0,1,0 1|0:0.663:0.446,0.445,0.109 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:0.675:0.439,0.447,0.114 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.652:0.446,0.455,0.098 1|1:1.78:0.011,0.198,0.791 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.847:0.008,0.137,0.855 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.683:0.434,0.449,0.117 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.747:0.017,0.218,0.764 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.868:0.014,0.105,0.881 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.687:0.431,0.45,0.118 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.739:0.4,0.461,0.139 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.754:0.392,0.462,0.146 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.041:0.959,0.041,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.72:0.41,0.46,0.13 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.754:0.392,0.462,0.146 0|0:0.658:0.45,0.441,0.109 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.538:0.686,0.091,0.224 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.608:0.511,0.37,0.119 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.678:0.437,0.447,0.115 1|1:2:0,0,1 1|0:0.757:0.391,0.46,0.149 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.757:0.391,0.46,0.149 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.684:0.433,0.45,0.117 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.794:0.011,0.184,0.805 1|1:2:0,0,1 1|1:1.724:0.022,0.232,0.746 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 1|1:2:0,0,1 +3 19672105 SNP-3.19670615. C A . PASS AR2=0.933;DR2=0.948;AF=0.422 GT:DS:GP 0|0:0.353:0.666,0.315,0.019 1|1:1.935:0.001,0.062,0.936 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.107:0.899,0.094,0.007 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0.101:0.9,0.1,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.155:0.852,0.142,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0.466:0.582,0.371,0.048 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.181:0.827,0.165,0.008 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.849,0.144,0.006 0|0:0:1,0,0 0|0:0.167:0.841,0.151,0.008 0|0:0.168:0.84,0.153,0.008 0|0:0.147:0.858,0.137,0.005 1|0:0.477:0.558,0.407,0.035 0|0:0.143:0.862,0.134,0.005 0|0:0:1,0,0 0|0:0.683:0.373,0.572,0.056 0|0:0.171:0.837,0.156,0.008 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1.265:0.176,0.382,0.441 1|1:2:0,0,1 0|1:0.864:0.242,0.652,0.106 0|0:0:1,0,0 0|0:0.209:0.802,0.186,0.011 0|0:0:1,0,0 0|0:0.147:0.858,0.137,0.005 0|0:0.455:0.566,0.413,0.021 1|0:0.764:0.324,0.589,0.087 0|0:0.085:0.916,0.083,0.001 0|0:0:1,0,0 1|0:0.847:0.288,0.578,0.134 0|0:0.158:0.848,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.775,0.213,0.012 0|0:0.129:0.876,0.119,0.005 0|0:0:1,0,0 0|0:0.226:0.787,0.201,0.013 1|1:2:0,0,1 0|0:0.183:0.825,0.168,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.19:0.078,0.653,0.268 1|1:2:0,0,1 0|1:0.607:0.474,0.446,0.081 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.308:0.096,0.501,0.404 1|1:2:0,0,1 0|0:0.19:0.818,0.173,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.845:0.009,0.138,0.854 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.347:0.662,0.33,0.008 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 1|1:1.598:0.077,0.247,0.676 1|1:2:0,0,1 0|0:0.149:0.878,0.096,0.026 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.175:0.833,0.159,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.013:0.988,0.012,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.187:0.822,0.169,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.427:0.152,0.269,0.579 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.843,0.15,0.007 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.157:0.849,0.145,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.829,0.162,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.205:0.806,0.183,0.011 0|0:0:1,0,0 0|0:0.228:0.787,0.199,0.015 0|0:0:1,0,0 0|0:0.185:0.823,0.168,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.052,0.947 1|1:1.95:0.001,0.048,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.463:0.618,0.3,0.082 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.707:0.305,0.682,0.013 0|0:0.315:0.706,0.273,0.021 0|0:0.24:0.8,0.161,0.039 1|1:1.917:0,0.083,0.917 0|0:0:1,0,0 +3 19672425 SNP-3.19670935. A G . PASS AR2=0.902;DR2=0.928;AF=0.502 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.439:0.045,0.472,0.484 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.016,0.2,0.784 1|0:1.4:0.067,0.465,0.468 1|0:1.283:0.113,0.49,0.396 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.453:0.048,0.452,0.501 1|1:1.38:0.091,0.439,0.47 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.442:0.051,0.455,0.493 1|1:2:0,0,1 1|1:1.694:0.022,0.261,0.716 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.59:0.039,0.332,0.629 1|1:2:0,0,1 1|1:1.637:0.035,0.294,0.672 1|1:1.636:0.036,0.293,0.671 1|1:2:0,0,1 1|1:1.328:0.094,0.484,0.422 0|1:1.39:0.087,0.436,0.477 1|1:1.343:0.129,0.398,0.472 1|1:1.685:0.028,0.259,0.713 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.922:0.302,0.473,0.225 0|1:1.301:0.221,0.257,0.522 0|0:0.363:0.682,0.273,0.045 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0,0.105,0.895 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.387:0.659,0.294,0.046 1|1:1.704:0.019,0.258,0.723 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.632:0.034,0.3,0.666 1|0:1.078:0.206,0.51,0.284 0|1:1.356:0.119,0.406,0.475 0|0:0:1,0,0 1|1:1.888:0.007,0.097,0.895 1|0:1.442:0.075,0.408,0.517 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.592:0.033,0.342,0.625 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.322:0.135,0.408,0.457 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.52:0.547,0.386,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.704:0.026,0.243,0.73 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.987:0.265,0.482,0.252 0|0:0.366:0.681,0.273,0.046 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.021,0.232,0.747 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.931:0.002,0.064,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.815:0.01,0.166,0.825 1|1:1.805:0.011,0.173,0.816 1|1:1.551:0.055,0.339,0.606 1|1:1.826:0.006,0.162,0.832 0|0:0:1,0,0 1|1:1.815:0.004,0.177,0.819 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.74:0.013,0.235,0.752 1|1:1.753:0.021,0.205,0.774 0|0:0:1,0,0 1|1:1.815:0.01,0.164,0.826 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.774:0.016,0.194,0.79 1|1:2:0,0,1 1|1:1.729:0.02,0.23,0.75 0|0:0:1,0,0 1|1:1.697:0.024,0.255,0.721 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.037:0.234,0.495,0.271 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.006,0.125,0.868 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.561:0.031,0.377,0.592 1|1:1.644:0.034,0.288,0.678 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.002,0.065,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.667:0.023,0.286,0.69 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.41:0.097,0.395,0.507 1|1:1.868:0.003,0.127,0.87 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.505:0.066,0.362,0.572 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.699:0.027,0.246,0.726 1|1:2:0,0,1 1|1:1.668:0.029,0.275,0.696 0|0:0:1,0,0 1|1:2:0,0,1 +3 19672940 SNP-3.19671450. C A . PASS AR2=0.974;DR2=0.979;AF=0.292 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.695:0.021,0.263,0.716 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.761:0.04,0.159,0.801 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0,0.071,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.954:0.002,0.041,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.804:0.01,0.176,0.814 0|0:0.696:0.43,0.445,0.125 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.357:0.131,0.38,0.488 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.184:0.191,0.433,0.375 1|1:1.816:0.01,0.165,0.825 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.202:0.12,0.558,0.322 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.004,0.164,0.832 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.822:0.008,0.161,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.565:0.101,0.234,0.665 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.757:0.023,0.196,0.781 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.805:0.01,0.176,0.814 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.008,0.15,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19680398 SNP-3.19678908. A G . PASS AR2=0.883;DR2=0.901;AF=0.262 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.948:0.281,0.489,0.23 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.863,0.137,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.81:0.354,0.483,0.164 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.831:0.344,0.482,0.174 1|0:0.77:0.379,0.472,0.149 0|0:1.03:0.24,0.49,0.27 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.744:0.395,0.466,0.139 0|0:0:1,0,0 1|0:0.753:0.389,0.469,0.142 0|1:0.556:0.516,0.411,0.073 1|1:1.573:0.045,0.337,0.618 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.876:0.319,0.486,0.195 0|1:1.011:0.276,0.437,0.287 0|0:0:1,0,0 0|1:0.836:0.337,0.49,0.173 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.332:0.705,0.259,0.036 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.522:0.059,0.359,0.581 0|0:0.606:0.504,0.385,0.11 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.776:0.375,0.475,0.15 0|0:0.487:0.577,0.359,0.064 1|1:1.536:0.054,0.356,0.59 0|1:0.848:0.331,0.491,0.179 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.952:0.278,0.493,0.229 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.123:0.194,0.488,0.317 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.051:0.224,0.5,0.275 1|1:2:0,0,1 0|1:1.05:0.231,0.488,0.281 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.765:0.381,0.473,0.146 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.027:0.244,0.485,0.271 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.124:0.194,0.488,0.318 1|0:1.163:0.157,0.522,0.321 1|0:1.182:0.164,0.49,0.346 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.045:0.227,0.501,0.272 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.675:0.443,0.44,0.118 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.761:0.383,0.472,0.145 1|1:2:0,0,1 0|0:0.743:0.396,0.465,0.139 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.769:0.38,0.471,0.149 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.788:0.366,0.481,0.154 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.874,0.113,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.188:0.172,0.467,0.361 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.673:0.445,0.438,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.698:0.428,0.446,0.126 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.712:0.414,0.46,0.126 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19684618 SNP-3.19683128. C A . PASS AR2=0.97;DR2=0.975;AF=0.388 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.25:0.764,0.223,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.238:0.773,0.216,0.011 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.221:0.788,0.203,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.254:0.763,0.22,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.941,0.054,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.261:0.754,0.23,0.016 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.257:0.763,0.216,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.894,0.104,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.716:0.409,0.466,0.125 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.843:0.205,0.747,0.048 0|1:1.05:0.023,0.903,0.074 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.159:0.845,0.151,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.118:0.889,0.104,0.007 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.3:0.722,0.255,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.196:0.811,0.182,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.052:0.95,0.048,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.852,0.142,0.006 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.243:0.772,0.214,0.015 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.93,0.068,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.09:0.913,0.084,0.003 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.302:0.727,0.244,0.029 0|0:0.18:0.828,0.163,0.008 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.197:0.812,0.179,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.196:0.813,0.179,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.305:0.719,0.258,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.86,0.134,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.074:0.928,0.069,0.002 0|0:0.039:0.963,0.035,0.002 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.039:0.963,0.035,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.876,0.119,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.255:0.762,0.22,0.017 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.795,0.205,0.001 1|1:1.935:0,0.065,0.935 0|0:0:1,0,0 +3 19684739 SNP-3.19683249. C A . PASS AR2=0.987;DR2=0.989;AF=0.334 GT:DS:GP 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.048,0.001 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.792:0.042,0.124,0.834 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.873:0.307,0.513,0.18 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.822:0.011,0.157,0.832 1|1:2:0,0,1 0|0:0.054:0.946,0.054,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.933:0.002,0.063,0.935 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.93:0.003,0.065,0.933 0|1:1.098:0.079,0.744,0.177 1|1:2:0,0,1 1|1:1.846:0.008,0.137,0.854 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.934:0.001,0.065,0.934 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 1|1:1.663:0.003,0.332,0.666 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.003,0.078,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.967:0.001,0.031,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.017,0.209,0.774 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.096:0.908,0.089,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19686461 SNP-3.19684971. C A . PASS AR2=0.996;DR2=0.997;AF=0.363 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.927,0.073,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.186:0.823,0.168,0.009 0|0:0.189:0.82,0.171,0.009 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.865,0.13,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.155:0.851,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19686821 SNP-3.19685331. A G . PASS AR2=0.982;DR2=0.985;AF=0.492 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.698:0.011,0.28,0.709 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.039:0.086,0.789,0.125 1|1:1.877:0.001,0.122,0.877 1|0:1.052:0.194,0.56,0.246 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.959:0,0.04,0.96 1|1:2:0,0,1 1|1:1.821:0.015,0.148,0.836 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.943:0.219,0.618,0.163 1|1:1.856:0.003,0.139,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.875:0,0.125,0.875 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.879:0.005,0.111,0.884 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.853:0.006,0.135,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|0:1.415:0.036,0.514,0.451 0|0:0:1,0,0 1|0:1.518:0.028,0.425,0.547 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.945:0.085,0.885,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.944:0.001,0.055,0.944 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.64:0.012,0.336,0.652 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.899:0.003,0.096,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.004,0.081,0.916 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19686986 SNP-3.19685496. C A . PASS AR2=0.999;DR2=0.999;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.915:0.004,0.076,0.92 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.918:0.004,0.073,0.923 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19687520 SNP-3.19686030. C A . PASS AR2=0.995;DR2=0.996;AF=0.381 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.163:0.837,0.162,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.937,0.06,0.003 1|0:1:0,1,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0.055:0.945,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.038:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0.143:0.863,0.13,0.007 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.902,0.097,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.191:0.811,0.187,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19688121 SNP-3.19686631. C A . PASS AR2=0.982;DR2=0.987;AF=0.306 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.002,0.089,0.909 1|1:1.888:0.004,0.105,0.891 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.037,0.962 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.392:0.615,0.378,0.007 0|0:0:1,0,0 1|1:1.765:0.002,0.231,0.767 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.94:0,0.059,0.94 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.004,0.074,0.922 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.43:0.102,0.366,0.532 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.414:0.059,0.468,0.473 1|1:1.87:0.006,0.118,0.876 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.308:0.103,0.485,0.411 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.004,0.099,0.897 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.008,0.227,0.765 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.947 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0.002,0.076,0.922 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.907:0.002,0.088,0.909 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19688841 SNP-3.19687351. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19690754 SNP-3.19689264. C A . PASS AR2=0.998;DR2=0.998;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.861,0.132,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.889:0.004,0.103,0.893 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.053,0.946 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19690846 SNP-3.19689356. A G . PASS AR2=0.982;DR2=0.987;AF=0.241 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.516:0.021,0.441,0.537 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.002,0.101,0.897 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.601:0.018,0.363,0.619 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.804:0.019,0.158,0.823 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.003,0.154,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.935,0.062,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.133:0.882,0.102,0.015 0|0:0:1,0,0 1|1:1.875:0.004,0.117,0.879 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.75:0.05,0.149,0.801 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.355:0.209,0.226,0.564 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19698612 SNP-3.19697122. A G . PASS AR2=0.954;DR2=0.967;AF=0.225 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.891,0.095,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.104:0.899,0.099,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.554:0.044,0.358,0.598 1|1:1.607:0.038,0.317,0.645 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.529:0.059,0.352,0.589 1|1:1.65:0.041,0.268,0.691 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.514:0.063,0.359,0.577 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.599:0.04,0.32,0.64 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.708:0.02,0.252,0.728 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.134:0.87,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.078:0.928,0.066,0.006 0|0:0:1,0,0 1|1:1.592:0.041,0.326,0.633 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.606:0.038,0.319,0.643 1|1:1.79:0.019,0.172,0.809 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.115:0.89,0.105,0.005 0|0:0.091:0.91,0.089,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.854:0.009,0.127,0.864 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.519:0.061,0.36,0.58 1|1:2:0,0,1 1|1:1.208:0.24,0.313,0.447 0|0:0:1,0,0 1|1:1.86:0.009,0.123,0.868 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.871,0.096,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19702588 SNP-3.19701098. C A . PASS AR2=0.985;DR2=0.988;AF=0.484 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.651:0.449,0.45,0.101 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.123:0.883,0.111,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.177:0.833,0.158,0.009 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.079:0.921,0.078,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.814:0.003,0.18,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.132:0.869,0.131,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.742:0.3,0.658,0.042 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.14:0.16,0.54,0.3 1|1:2:0,0,1 0|0:0.067:0.934,0.066,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.212:0.014,0.76,0.226 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.028,0.001 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.128:0.878,0.116,0.006 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.407:0.107,0.378,0.515 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19703781 SNP-3.19702291. C A . PASS AR2=0.985;DR2=0.987;AF=0.387 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.192:0.817,0.173,0.009 0|0:0:1,0,0 0|0:0.288:0.733,0.246,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.223:0.79,0.198,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.215:0.796,0.193,0.011 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0.149:0.856,0.139,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.826,0.163,0.011 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.18:0.829,0.162,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.857,0.137,0.006 0|1:1:0,1,0 0|0:0.197:0.812,0.178,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.837,0.156,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.156:0.851,0.143,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.148:0.857,0.137,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.13:0.025,0.82,0.155 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0,0.034,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.119:0.886,0.11,0.004 +3 19704698 SNP-3.19703208. A G . PASS AR2=0.948;DR2=0.954;AF=0.188 GT:DS:GP 0|0:0.184:0.825,0.167,0.009 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.135:0.868,0.128,0.004 1|0:1:0,1,0 0|0:0.189:0.82,0.171,0.009 0|0:0:1,0,0 0|0:0.142:0.862,0.133,0.005 1|1:2:0,0,1 0|0:0.135:0.868,0.128,0.004 0|0:0.183:0.825,0.167,0.008 1|1:2:0,0,1 0|0:0.088:0.914,0.085,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.191:0.819,0.172,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.116:0.89,0.104,0.006 0|0:0.153:0.854,0.139,0.007 0|0:0.131:0.873,0.123,0.004 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.847,0.147,0.006 0|0:0.197:0.813,0.177,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.198:0.812,0.177,0.01 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.825,0.166,0.009 0|0:0.081:0.92,0.078,0.001 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.192:0.817,0.174,0.009 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.182:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.195:0.815,0.175,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.107:0.897,0.1,0.003 0|0:0.167:0.839,0.154,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.845,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.827,0.165,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.845,0.148,0.007 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.86,0.134,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.896,0.1,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.855,0.145,0 0|0:0.185:0.823,0.168,0.009 0|0:0:1,0,0 0|0:0.128:0.878,0.116,0.006 0|0:0.148:0.859,0.135,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.169:0.838,0.154,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.853,0.141,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.202:0.809,0.18,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.005:0.996,0.004,0 0|0:0:1,0,0 0|0:0.09:0.913,0.084,0.003 0|0:0.11:0.894,0.101,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.894,0.101,0.005 0|0:0.164:0.843,0.15,0.007 0|0:0:1,0,0 0|0:0.095:0.908,0.088,0.003 0|0:0.116:0.89,0.104,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.884,0.11,0.006 0|0:0:1,0,0 0|0:0.218:0.798,0.187,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.088:0.915,0.082,0.003 0|0:0.113:0.89,0.106,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19705578 SNP-3.19704088. A G . PASS AR2=0.938;DR2=0.95;AF=0.299 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.938:0.284,0.494,0.222 1|1:2:0,0,1 0|1:0.913:0.275,0.537,0.188 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.716:0,0.283,0.717 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.981:0.245,0.529,0.226 0|0:0:1,0,0 1|0:1.096:0.207,0.49,0.303 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.187:0.824,0.166,0.011 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.07:0.934,0.062,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.667:0.444,0.444,0.111 0|1:1:0,1,0 0|0:0.712:0.418,0.452,0.13 0|1:0.961:0.321,0.396,0.282 0|1:1.064:0.224,0.488,0.288 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.308:0.72,0.253,0.027 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.878:0,0.122,0.878 0|0:0.693:0.429,0.448,0.122 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.592:0.445,0.519,0.036 0|0:0.009:0.992,0.008,0 1|1:2:0,0,1 1|0:0.976:0.265,0.494,0.241 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.616:0.48,0.423,0.097 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.824:0.346,0.484,0.17 1|1:2:0,0,1 1|0:0.741:0.374,0.511,0.115 0|1:1.116:0.191,0.503,0.306 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.178:0.835,0.153,0.012 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.052,0.001 0|0:0:1,0,0 1|1:1.654:0.033,0.281,0.686 0|0:0.608:0.486,0.42,0.094 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.614:0.482,0.422,0.096 1|1:2:0,0,1 0|0:0.61:0.485,0.421,0.095 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19707481 SNP-3.19705991. C A . 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C A . PASS AR2=0.972;DR2=0.977;AF=0.394 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.298:0.724,0.253,0.022 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.348:0.677,0.298,0.025 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.292:0.73,0.248,0.022 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.309:0.715,0.261,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.78,0.206,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.269:0.749,0.233,0.018 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0.027:0.973,0.027,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.107:0.902,0.09,0.008 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.127:0.874,0.124,0.001 0|0:0.232:0.78,0.207,0.012 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.809,0.182,0.009 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0.185:0.824,0.167,0.009 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.198:0.817,0.169,0.015 0|0:0:1,0,0 0|0:0.277:0.737,0.248,0.014 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.885:0.001,0.114,0.886 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.255:0.761,0.223,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.189:0.819,0.172,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0.184:0.825,0.166,0.009 0|0:0.197:0.804,0.194,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.308:0.716,0.261,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.293:0.729,0.249,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.871,0.128,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.181:0.827,0.166,0.008 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.746,0.235,0.019 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.129:0.874,0.124,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 +3 19716093 SNP-3.19714603. C A . PASS AR2=0.993;DR2=0.994;AF=0.383 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.946:0.264,0.525,0.21 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.072:0.93,0.068,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.897,0.102,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.067:0.071,0.792,0.138 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.162:0.841,0.155,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.273:0.745,0.236,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19717564 SNP-3.19716074. C A . PASS AR2=0.99;DR2=0.991;AF=0.359 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.954,0.045,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.08:0.926,0.069,0.005 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.027:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.966,0.034,0.001 0|0:0.25:0.756,0.237,0.006 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.85,0.145,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.943,0.056,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.058:0.942,0.057,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.108:0.893,0.106,0.001 1|1:1.748:0,0.252,0.748 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.034,0.965 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.914:0,0.085,0.915 1|1:1.948:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.137:0.865,0.133,0.002 0|0:0:1,0,0 0|0:0.172:0.829,0.17,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.016,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0,0.129,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.01,0.126,0.865 0|0:0:1,0,0 +3 19717948 SNP-3.19716458. C A . PASS AR2=0.995;DR2=0.996;AF=0.345 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.941:0.279,0.501,0.22 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.267:0.745,0.243,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.026:0.975,0.025,0 0|0:0.011:0.989,0.011,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.061:0.94,0.06,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19718204 SNP-3.19716714. C A . PASS AR2=0.987;DR2=0.989;AF=0.38 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.843,0.152,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.082:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.116:0.892,0.1,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.868,0.126,0.006 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.06:0.942,0.057,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.855,0.139,0.007 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.107:0.895,0.103,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.002 0|0:0.009:0.992,0.008,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.242:0.773,0.213,0.015 1|1:2:0,0,1 0|0:0.121:0.883,0.113,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.24:0.774,0.211,0.014 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.836,0.157,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.973:0.105,0.817,0.078 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.283:0.725,0.268,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.815,0.173,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.902,0.095,0.003 0|0:0.092:0.909,0.09,0.001 0|0:0.078:0.925,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19718527 SNP-3.19717037. C A . PASS AR2=1;DR2=1;AF=0.35 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19718720 SNP-3.19717230. C A . PASS AR2=0.971;DR2=0.98;AF=0.279 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.372:0.103,0.423,0.475 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.004,0.134,0.862 1|1:1.655:0.03,0.285,0.685 1|0:1:0,1,0 0|1:1.179:0.115,0.592,0.294 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.573:0.027,0.373,0.6 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.909:0.003,0.086,0.912 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.76:0.017,0.207,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0.001,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.498:0.056,0.39,0.554 0|0:0.052:0.949,0.051,0.001 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.109:0.894,0.103,0.003 1|0:1:0,1,0 0|0:0.041:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.379:0.101,0.418,0.481 1|1:2:0,0,1 1|1:1.933:0.002,0.062,0.936 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.594:0.053,0.299,0.648 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0.2:0.817,0.167,0.017 0|0:0:1,0,0 +3 19719018 SNP-3.19717528. C A . PASS AR2=0.985;DR2=0.988;AF=0.368 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0,0.063,0.937 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 1|1:1.916:0.006,0.073,0.921 1|1:1.912:0,0.088,0.912 1|1:1.545:0.057,0.341,0.602 1|1:1.969:0,0.031,0.969 1|1:1.959:0,0.04,0.96 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.676:0.024,0.276,0.7 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0.191:0.824,0.161,0.015 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.937:0.003,0.058,0.939 1|1:1.923:0.003,0.07,0.927 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.181:0.833,0.153,0.014 1|1:1.944:0.001,0.054,0.945 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.002,0.156,0.842 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.826,0.159,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.607:0.404,0.586,0.011 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.834,0.152,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.917,0.083,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.172:0.842,0.143,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.003,0.044,0.953 0|0:0:1,0,0 +3 19719052 SNP-3.19717562. C A . PASS AR2=0.982;DR2=0.987;AF=0.447 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.08:0.921,0.079,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.666:0.03,0.275,0.696 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.7:0.029,0.242,0.729 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.626:0.036,0.302,0.662 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.159:0.841,0.159,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.276:0.727,0.269,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.634:0.035,0.296,0.669 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.643:0.033,0.29,0.677 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.647:0.03,0.293,0.677 0|0:0.005:0.995,0.005,0 0|0:0.087:0.913,0.087,0 0|0:0:1,0,0 0|0:0.039:0.962,0.037,0.001 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.632:0.036,0.296,0.668 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.668:0.035,0.262,0.703 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.728:0.022,0.228,0.75 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19720745 SNP-3.19719255. A G . PASS AR2=0.914;DR2=0.934;AF=0.444 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.146:0.185,0.485,0.33 1|1:1.316:0.14,0.404,0.456 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.229:0.148,0.475,0.377 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.268:0.136,0.46,0.404 1|0:1.14:0.187,0.486,0.327 1|1:2:0,0,1 1|1:2:0,0,1 0|0:1.078:0.213,0.497,0.291 1|1:2:0,0,1 0|1:1.17:0.174,0.482,0.344 0|1:1.463:0.031,0.475,0.494 1|1:1.954:0.001,0.044,0.955 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.431:0.611,0.347,0.042 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.591:0.028,0.352,0.62 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.28:0.111,0.498,0.391 1|0:1.306:0.094,0.506,0.4 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.005,0.18,0.815 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.86:0.008,0.125,0.867 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 1|1:1.655:0.027,0.29,0.682 0|0:0.357:0.676,0.29,0.033 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.544:0.047,0.362,0.591 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.981 1|1:1.462:0.035,0.467,0.498 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0.002,0.074,0.924 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.317:0.708,0.266,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.717,0.259,0.024 0|0:0.316:0.71,0.265,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.004,0.097,0.899 1|0:0.779:0.324,0.573,0.103 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.711:0.002,0.286,0.712 0|0:0.986:0.341,0.332,0.327 0|0:0:1,0,0 0|0:0.302:0.721,0.255,0.023 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.135:0.19,0.486,0.325 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.369:0.109,0.414,0.478 1|1:1.786:0.031,0.152,0.817 1|1:2:0,0,1 1|1:1.811:0.01,0.17,0.821 1|1:1.095:0.207,0.491,0.302 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.93:0.003,0.065,0.932 0|0:0:1,0,0 1|1:1.917:0.001,0.081,0.918 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.954:0.001,0.045,0.955 0|0:0:1,0,0 1|1:1.742:0.004,0.25,0.746 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.14:0.187,0.486,0.327 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.771:0.008,0.213,0.779 1|1:2:0,0,1 1|1:1.653:0.027,0.293,0.68 0|0:0:1,0,0 1|1:1.86:0.007,0.126,0.867 0|0:0:1,0,0 1|1:1.867:0.006,0.121,0.873 1|0:1.288:0.118,0.476,0.406 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.003,0.122,0.874 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.006,0.1,0.894 1|1:1.871:0.005,0.12,0.875 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.899:0.004,0.093,0.903 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.025,0.975 0|0:0.342:0.689,0.28,0.031 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.578:0.015,0.393,0.593 1|1:1.496:0.092,0.319,0.588 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.006,0.069,0.925 0|0:0.339:0.699,0.263,0.038 0|1:1.261:0.138,0.463,0.399 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19720838 SNP-3.19719348. C A . PASS AR2=0.96;DR2=0.974;AF=0.455 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.062:0.938,0.061,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.935,0.064,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.099:0.904,0.093,0.003 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.235:0.126,0.514,0.36 0|0:0:1,0,0 0|0:0.128:0.876,0.119,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.913,0.086,0.001 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.477:0.067,0.389,0.544 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.089:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.048,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.174:0.833,0.16,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.357:0.099,0.445,0.456 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.444:0.078,0.4,0.522 0|1:1.435:0.08,0.404,0.516 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.297:0.721,0.26,0.019 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.436:0.08,0.403,0.516 0|1:1.441:0.079,0.402,0.519 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.432:0.081,0.405,0.513 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.867:0,0.133,0.867 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.202:0.807,0.183,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.495:0.062,0.38,0.558 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.362:0.683,0.272,0.045 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.27:0.135,0.461,0.405 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.375:0.099,0.426,0.475 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19721419 SNP-3.19719929. C A . PASS AR2=0.951;DR2=0.967;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.363:0.667,0.304,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.435:0.611,0.343,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.342:0.688,0.281,0.031 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.426:0.619,0.337,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.537:0.468,0.527,0.005 0|1:1.087:0.219,0.475,0.306 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.487:0.514,0.485,0.001 0|0:0.37:0.636,0.358,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0,0.097,0.903 1|1:2:0,0,1 0|0:0.424:0.62,0.337,0.044 1|1:2:0,0,1 0|0:0.064:0.936,0.064,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.358:0.678,0.286,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.754:0.418,0.411,0.172 0|1:1.207:0.131,0.532,0.338 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.415:0.629,0.327,0.044 0|0:0.55:0.472,0.506,0.022 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.428:0.617,0.339,0.044 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0.4:0.642,0.316,0.042 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.44:0.607,0.347,0.046 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.479:0.58,0.361,0.059 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.442:0.605,0.348,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.146:0.865,0.125,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.408:0.635,0.322,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19721460 SNP-3.19719970. C A . PASS AR2=0.987;DR2=0.99;AF=0.488 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.281:0.736,0.248,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.931,0.067,0.001 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.919:0.003,0.076,0.921 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.516:0.013,0.459,0.529 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.853:0.009,0.129,0.862 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.96,0.039,0.001 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.004,0.195,0.801 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.474:0.537,0.452,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.003,0.067,0.93 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.026:0.974,0.026,0 1|1:1.921:0.003,0.073,0.924 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.892:0,0.108,0.892 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.064:0.94,0.057,0.004 0|0:0.285:0.742,0.231,0.027 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.151:0.856,0.137,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.804,0.186,0.011 0|0:0.185:0.818,0.18,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19721861 SNP-3.19720371. A G . PASS AR2=0.997;DR2=0.997;AF=0.279 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.769:0.005,0.22,0.775 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.987:0,0.013,0.987 1|1:1.946:0,0.054,0.946 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.952:0,0.048,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.789:0.045,0.12,0.834 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19721975 SNP-3.19720485. C A . PASS AR2=0.992;DR2=0.993;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.747,0.244,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.138:0.866,0.129,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.17:0.839,0.153,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.922,0.078,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.02:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.284:0.727,0.262,0.011 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.13:0.875,0.12,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.093:0.909,0.089,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.065:0.937,0.061,0.002 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.886,0.109,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.069,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.072:0.017,0.895,0.089 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.136:0.867,0.129,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19722889 SNP-3.19721399. C A . PASS AR2=0.999;DR2=0.999;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.96,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.808:0.001,0.19,0.809 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19723107 SNP-3.19721617. A G . PASS AR2=0.994;DR2=0.995;AF=0.257 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.238:0,0.761,0.238 1|0:0.998:0.006,0.989,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.701:0,0.299,0.701 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.936,0.064,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.691:0,0.309,0.691 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.043:0.957,0.043,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.962,0.036,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 19723127 SNP-3.19721637. C A . PASS AR2=0.844;DR2=0.887;AF=0.223 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.233:0.781,0.206,0.014 0|0:0:1,0,0 1|0:1.068:0.212,0.507,0.28 0|0:0.864:0.396,0.344,0.26 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.686:0.431,0.452,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.765:0.383,0.469,0.148 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.2:0.815,0.17,0.015 0|1:0.725:0.409,0.457,0.134 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.098:0.163,0.577,0.261 1|1:2:0,0,1 1|0:1.053:0.23,0.488,0.283 0|0:0.789:0.37,0.472,0.158 1|0:1.334:0.125,0.417,0.459 1|1:2:0,0,1 0|0:0.259:0.768,0.206,0.026 0|0:0:1,0,0 0|1:0.598:0.506,0.39,0.104 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.8:0.353,0.495,0.153 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.57:0.512,0.405,0.082 0|0:0.493:0.568,0.371,0.061 0|0:0.479:0.577,0.368,0.055 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.203:0.82,0.157,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.571:0.512,0.406,0.083 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.516:0.551,0.382,0.067 0|0:0:1,0,0 0|0:0.475:0.581,0.363,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.53:0.54,0.39,0.07 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.499:0.564,0.374,0.063 0|0:0:1,0,0 0|0:0.509:0.557,0.378,0.065 1|1:2:0,0,1 0|0:0.423:0.626,0.325,0.049 0|0:0.51:0.555,0.379,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.323:0.714,0.249,0.037 0|0:0.094:0.911,0.083,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.228:0.785,0.201,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.514:0.553,0.38,0.067 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.221:0.791,0.197,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.876,0.118,0.006 0|0:0.195:0.815,0.175,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.579:0.506,0.41,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.264:0.027,0.681,0.291 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.493:0.568,0.371,0.061 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.451:0.598,0.353,0.049 0|0:0:1,0,0 0|0:0.491:0.57,0.37,0.061 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.705:0.008,0.279,0.713 0|0:0:1,0,0 1|0:0.775:0.377,0.471,0.152 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.787:0.37,0.472,0.158 0|0:0.491:0.57,0.37,0.061 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.234:0.78,0.207,0.014 0|0:0:1,0,0 1|1:1.579:0.042,0.338,0.62 1|0:0.789:0.369,0.472,0.158 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.781:0.385,0.449,0.166 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.572:0.515,0.397,0.088 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.91:0.343,0.404,0.253 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.506:0.559,0.377,0.065 +3 19723998 SNP-3.19722508. A G . PASS AR2=0.978;DR2=0.981;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.812:0.012,0.163,0.825 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.848:0.009,0.134,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.94,0.058,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.857,0.136,0.008 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.939,0.059,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.904,0.095,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.86:0.336,0.468,0.196 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.861,0.137,0.002 0|0:0.257:0.76,0.223,0.017 0|0:0.212:0.791,0.205,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.038:0.963,0.036,0.001 0|0:0.258:0.742,0.258,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.172:0.828,0.172,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.935,0.062,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.788,0.2,0.012 0|0:0:1,0,0 0|0:0.281:0.74,0.239,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.007,0.121,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.829,0.167,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.264:0.754,0.228,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.935,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.768,0.215,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19724422 SNP-3.19722932. A G . PASS AR2=0.924;DR2=0.944;AF=0.251 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.364:0.093,0.449,0.457 0|0:0:1,0,0 1|0:0.913:0.231,0.625,0.144 0|0:0:1,0,0 1|0:1.041:0.282,0.395,0.323 0|0:0.318:0.707,0.269,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.386:0.635,0.343,0.022 0|0:0:1,0,0 1|1:1.432:0.079,0.41,0.511 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.15:0.403,0.043,0.553 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.162:0.182,0.474,0.344 1|1:2:0,0,1 0|1:0.895:0.337,0.432,0.231 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.472:0.582,0.364,0.054 0|0:0.436:0.597,0.369,0.034 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.743:0.345,0.567,0.088 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.019:0.064,0.852,0.084 1|0:0.999:0.063,0.876,0.062 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.867:0.212,0.71,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.333:0.043,0.581,0.376 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.89:0.003,0.103,0.893 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.943,0.053,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.803:0.369,0.458,0.173 0|0:0:1,0,0 0|0:0.2:0.813,0.174,0.013 0|1:0.346:0.685,0.285,0.031 1|1:2:0,0,1 0|0:0.172:0.841,0.147,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.347:0.062,0.53,0.408 0|0:0:1,0,0 0|1:1.021:0.044,0.892,0.064 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.315:0.715,0.255,0.03 1|1:1.879:0.004,0.113,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.48:0.572,0.377,0.051 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.64,0.307,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.622:0.495,0.388,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.804,0.183,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.431:0.629,0.31,0.06 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19724860 SNP-3.19723370. A G . PASS AR2=0.975;DR2=0.979;AF=0.393 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.186:0.061,0.691,0.248 0|0:0:1,0,0 1|1:1.778:0.013,0.195,0.791 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.877:0.006,0.111,0.883 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.779:0.015,0.192,0.793 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.928:0.002,0.068,0.93 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 1|1:1.802:0.009,0.18,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.011,0.186,0.803 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.029:0.971,0.029,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.785:0.01,0.195,0.795 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.795:0.009,0.187,0.804 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.88:0.004,0.111,0.884 1|1:1.849:0.007,0.138,0.856 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:1.852:0.006,0.135,0.859 1|1:1.706:0.018,0.258,0.724 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.169:0.111,0.61,0.279 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.078:0.092,0.737,0.171 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.83:0.009,0.152,0.839 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.289:0.741,0.229,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.831:0.009,0.152,0.84 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.843:0.007,0.143,0.85 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.692:0.03,0.249,0.721 1|1:1.786:0.009,0.195,0.796 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.019:0.129,0.723,0.148 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.435:0.651,0.263,0.086 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19725751 SNP-3.19724261. A G . PASS AR2=0.999;DR2=0.999;AF=0.209 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.104:0.9,0.096,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19727065 SNP-3.19725575. C A . PASS AR2=0.961;DR2=0.972;AF=0.349 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.049:0.951,0.049,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.793:0.212,0.782,0.005 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.861,0.137,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.071:0.93,0.069,0.001 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.404:0.097,0.402,0.501 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|0:1:0,1,0 1|1:1.862:0.008,0.123,0.87 1|1:1.886:0.006,0.102,0.892 0|1:1.404:0.097,0.402,0.501 1|0:1.284:0.132,0.452,0.416 1|1:2:0,0,1 1|1:1.862:0.01,0.119,0.871 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.649:0,0.35,0.65 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.066:0.936,0.061,0.003 1|1:2:0,0,1 0|0:0.081:0.919,0.081,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.935:0,0.065,0.935 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.607:0.013,0.366,0.621 1|1:1.772:0,0.228,0.772 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.382:0.661,0.297,0.043 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.081:0.92,0.08,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.162:0.271,0.297,0.433 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.234:0.8,0.165,0.034 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.684:0.411,0.493,0.096 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.877:0.005,0.113,0.882 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.329:0.671,0.329,0 1|0:1.262:0.142,0.455,0.403 0|0:0:1,0,0 +3 19727730 SNP-3.19726240. C A . PASS AR2=0.978;DR2=0.984;AF=0.359 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.841,0.154,0.005 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.009:0.337,0.317,0.346 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.072:0.929,0.071,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.769:0.012,0.208,0.781 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.793:0.339,0.53,0.132 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.294:0.104,0.498,0.398 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.912,0.087,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.532:0.561,0.347,0.092 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.982:0.238,0.542,0.22 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.875:0.321,0.482,0.196 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19731749 SNP-3.19730259. A G . PASS AR2=0.952;DR2=0.96;AF=0.305 GT:DS:GP 1|1:1.695:0.016,0.274,0.711 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.962:0.117,0.804,0.079 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.014,0.207,0.779 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.811:0.011,0.167,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.751:0.015,0.218,0.767 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.833:0.008,0.151,0.841 1|1:1.561:0.024,0.391,0.585 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.509:0.03,0.431,0.539 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.795:0.011,0.183,0.806 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.47:0.052,0.426,0.522 1|1:1.724:0.024,0.228,0.748 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.152:0.027,0.793,0.18 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|0:1.292:0.123,0.463,0.415 1|0:0.911:0.302,0.486,0.213 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.251:0.757,0.235,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.733:0.392,0.484,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.593:0.415,0.577,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.967:0.099,0.836,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.1:0.906,0.088,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.826:0.007,0.16,0.833 1|1:1.734:0.031,0.204,0.765 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.183:0.844,0.13,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.794:0.011,0.185,0.805 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.011,0.184,0.804 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.8:0.011,0.179,0.811 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.801:0.01,0.18,0.81 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.627:0.065,0.242,0.693 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.969,0.03,0 1|1:1.785:0.012,0.19,0.797 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.008,0.145,0.846 1|1:1.823:0.01,0.157,0.833 1|1:1.854:0.008,0.131,0.862 1|1:1.772:0.014,0.2,0.786 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.84:0.008,0.144,0.848 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.786:0.013,0.189,0.798 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.781:0.012,0.194,0.794 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.837:0.008,0.147,0.845 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 +3 19731783 SNP-3.19730293. C A . PASS AR2=0.988;DR2=0.991;AF=0.317 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.448:0.572,0.408,0.02 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.944,0.054,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.758:0.013,0.216,0.771 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.134:0.055,0.757,0.189 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.62:0.482,0.415,0.103 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.811:0.36,0.469,0.171 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.094,0.003 0|0:0:1,0,0 +3 19732132 SNP-3.19730642. C A . PASS AR2=0.982;DR2=0.986;AF=0.272 GT:DS:GP 0|0:0:1,0,0 1|1:1.774:0.014,0.198,0.788 0|0:0:1,0,0 1|1:1.684:0.023,0.269,0.708 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.81:0.008,0.174,0.818 1|1:1.857:0.007,0.129,0.864 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.019:0.981,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0.001,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.041,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.884:0.007,0.102,0.891 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.76:0.016,0.208,0.776 1|1:1.72:0.017,0.246,0.737 1|1:2:0,0,1 1|1:1.646:0.033,0.288,0.679 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.884:0.169,0.779,0.052 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.652:0.034,0.28,0.686 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.728:0.018,0.235,0.746 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.722:0.017,0.243,0.74 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.939:0.004,0.054,0.942 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19734634 SNP-3.19733144. C A . PASS AR2=0.985;DR2=0.987;AF=0.437 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.772:0.017,0.195,0.789 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.124:0.876,0.123,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.954:0.002,0.043,0.956 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.004,0.185,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.095:0.176,0.552,0.271 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.051:0.205,0.538,0.257 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.424:0.045,0.486,0.469 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.226:0.147,0.48,0.373 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.135:0.16,0.546,0.294 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.026:0.246,0.482,0.272 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19735124 SNP-3.19733634. C A . PASS AR2=0.977;DR2=0.982;AF=0.222 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0.166:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0.251:0.766,0.218,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.858,0.136,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.732:0.27,0.728,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.935,0.062,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.684:0.029,0.257,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.386:0.638,0.337,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.77:0.01,0.209,0.78 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.909:0.241,0.609,0.15 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.325:0.112,0.451,0.437 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.309:0.727,0.237,0.036 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.951:0,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.874:0.003,0.12,0.877 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.822,0.171,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19735146 SNP-3.19733656. A G . PASS AR2=0.993;DR2=0.995;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.908:0.001,0.09,0.909 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.857,0.134,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.418:0.583,0.417,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.861,0.131,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.847,0.145,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.86,0.132,0.008 1|1:2:0,0,1 +3 19741750 SNP-3.19740260. C A . PASS AR2=0.966;DR2=0.976;AF=0.431 GT:DS:GP 0|0:0.065:0.936,0.064,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.055:0.947,0.051,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.236:0.781,0.201,0.017 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.852,0.14,0.007 0|0:0:1,0,0 0|0:0.198:0.821,0.161,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.18:0.83,0.16,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.928:0.004,0.064,0.932 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.631:0.474,0.42,0.105 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.042:0.138,0.683,0.179 0|0:0.376:0.66,0.304,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.522:0.54,0.397,0.062 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.445:0.602,0.352,0.047 0|0:0.324:0.702,0.272,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.453:0.592,0.363,0.045 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.274:0.009,0.707,0.283 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.36:0.675,0.289,0.035 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.766:0.015,0.204,0.781 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.585:0.48,0.456,0.064 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.812:0.011,0.165,0.824 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.363:0.675,0.287,0.038 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.012,0.988 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.392:0.653,0.302,0.045 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0.361:0.678,0.284,0.038 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19744116 SNP-3.19742626. C A . PASS AR2=0.974;DR2=0.98;AF=0.362 GT:DS:GP 0|0:0.071:0.93,0.07,0.001 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.153:0.856,0.135,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.302:0.701,0.296,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.007,0.144,0.849 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.726:0.003,0.269,0.729 1|0:1.039:0.088,0.785,0.127 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.827:0.006,0.162,0.832 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.77:0.008,0.214,0.778 1|1:1.822:0.005,0.168,0.827 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.524:0.493,0.49,0.017 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.154:0.001,0.845,0.155 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.105:0.002,0.892,0.106 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.75:0.007,0.236,0.757 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.139:0.046,0.769,0.185 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.58:0.004,0.413,0.584 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.881,0.119,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.281:0.03,0.66,0.31 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.943,0.056,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.643:0.017,0.324,0.66 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.602:0.029,0.34,0.631 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.584:0.026,0.364,0.61 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.835:0.008,0.148,0.844 0|0:0:1,0,0 +3 19744886 SNP-3.19743396. A G . PASS AR2=0.811;DR2=0.841;AF=0.265 GT:DS:GP 0|1:0.705:0.416,0.463,0.121 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.685:0.418,0.479,0.103 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.329:0.696,0.278,0.025 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.944:0.266,0.524,0.21 1|1:1.847:0.028,0.096,0.875 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.447:0.618,0.317,0.065 0|1:1.305:0.122,0.45,0.427 0|0:0.449:0.593,0.366,0.041 0|1:1.25:0.139,0.472,0.389 1|1:1.333:0.112,0.443,0.445 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.585:0.031,0.354,0.615 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.435:0.605,0.356,0.04 0|0:0.318:0.686,0.311,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.631:0.446,0.477,0.077 0|0:0.796:0.364,0.477,0.16 0|0:0.835:0.343,0.48,0.177 0|0:0:1,0,0 0|0:0.817:0.351,0.481,0.168 1|0:0.829:0.346,0.48,0.175 0|0:0:1,0,0 0|1:0.82:0.351,0.478,0.171 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.811:0.352,0.485,0.163 0|0:0:1,0,0 1|0:0.748:0.393,0.466,0.141 1|1:0.827:0.343,0.487,0.17 0|0:0.239:0.761,0.239,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.712:0.411,0.466,0.123 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.808:0.352,0.489,0.16 0|1:0.748:0.393,0.466,0.141 0|1:0.773:0.378,0.471,0.151 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.404:0.599,0.399,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.746:0.393,0.469,0.139 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.718:0.407,0.468,0.125 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.719:0.409,0.462,0.129 0|0:0:1,0,0 0|1:0.948:0.266,0.519,0.214 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.959:0.267,0.507,0.226 0|0:0:1,0,0 0|0:0.747:0.394,0.465,0.141 1|0:1.287:0.127,0.459,0.414 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.019,0.202,0.778 1|0:0.748:0.393,0.465,0.141 0|0:0:1,0,0 1|0:0.861:0.325,0.49,0.186 0|1:0.959:0.263,0.514,0.222 0|0:0:1,0,0 0|1:0.782:0.372,0.474,0.154 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.512:0.051,0.386,0.563 0|0:0:1,0,0 1|1:1.667:0.028,0.278,0.694 1|1:1.499:0.057,0.387,0.556 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.206:0.816,0.161,0.023 0|1:1.356:0.105,0.434,0.461 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.755:0.389,0.468,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.808:0.357,0.479,0.164 0|0:0.747:0.394,0.465,0.141 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0.656:0.471,0.402,0.127 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.77:0.307,0.616,0.077 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.755:0.389,0.468,0.144 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.686:0.421,0.472,0.107 0|0:0:1,0,0 1|0:0.825:0.346,0.484,0.17 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.024,0.252,0.724 0|0:0:1,0,0 1|1:1.772:0.018,0.192,0.79 0|1:0.857:0.332,0.478,0.19 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.771:0.379,0.47,0.151 1|1:1.513:0.066,0.354,0.579 1|1:2:0,0,1 1|0:0.898:0.324,0.455,0.222 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.308:0.722,0.249,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:0.772:0.379,0.471,0.151 0|0:0.849:0.333,0.484,0.182 1|1:2:0,0,1 0|1:0.756:0.389,0.467,0.144 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.027,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.523:0.576,0.324,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.652:0.419,0.509,0.072 0|0:0:1,0,0 1|0:0.796:0.361,0.482,0.157 +3 19747751 SNP-3.19746261. C A . PASS AR2=0.989;DR2=0.99;AF=0.319 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.182:0.17,0.478,0.352 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.128:0.19,0.492,0.318 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.889:0.21,0.691,0.099 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.817:0.274,0.635,0.091 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.156:0.179,0.485,0.336 0|0:0:1,0,0 +3 19747918 SNP-3.19746428. C A . PASS AR2=0.981;DR2=0.987;AF=0.384 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.921,0.075,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.911,0.086,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.729:0.023,0.225,0.752 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.822:0.203,0.772,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.364:0.109,0.417,0.473 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.349:0.105,0.44,0.455 1|0:1.108:0.036,0.821,0.144 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.246:0.084,0.586,0.33 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.146:0.027,0.799,0.173 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.989:0.081,0.848,0.071 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.335:0.122,0.421,0.457 0|0:0:1,0,0 +3 19751038 SNP-3.19749548. C A . PASS AR2=0.979;DR2=0.985;AF=0.33 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.317:0.126,0.431,0.443 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.035:0.032,0.901,0.067 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.017:0.157,0.669,0.174 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.354:0.107,0.432,0.461 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.222:0.103,0.571,0.326 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.204:0.009,0.778,0.213 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.887:0.164,0.786,0.051 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.626:0.405,0.564,0.031 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.811:0.235,0.719,0.046 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.285:0.143,0.43,0.428 0|0:0:1,0,0 +3 19762971 SNP-3.19761481. A G . PASS AR2=0.969;DR2=0.978;AF=0.252 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.914:0.002,0.082,0.916 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.899:0.104,0.894,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.055:0.947,0.052,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.758,0.239,0.004 0|1:0.794:0.213,0.779,0.007 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.661:0.342,0.655,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.077:0.924,0.074,0.001 0|0:0.086:0.916,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.001 0|0:0.076:0.926,0.073,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.129:0.133,0.605,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.828,0.169,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.893:0.003,0.102,0.895 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.703:0.451,0.395,0.154 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.918,0.082,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.364:0.638,0.36,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.004,0.083,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.37:0.662,0.306,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.546:0.556,0.343,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.624:0.493,0.39,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.943,0.055,0.001 1|1:2:0,0,1 +3 19763222 SNP-3.19761732. A G . PASS AR2=0.964;DR2=0.969;AF=0.227 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.971:0,0.029,0.971 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0.002,0.064,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.329:0.045,0.581,0.374 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.003,0.094,0.903 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0.031:0.97,0.029,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.137:0.868,0.127,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.155:0.852,0.142,0.006 0|0:0:1,0,0 0|0:0.156:0.85,0.143,0.006 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.24:0.76,0.24,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0.187:0.821,0.171,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.138:0.867,0.128,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.133:0.873,0.121,0.006 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.246:0.761,0.231,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.078,0.002 0|0:0.037:0.963,0.037,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.146,0.006 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.279:0.743,0.235,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.859,0.135,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.161:0.846,0.148,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.693,0.276,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.957:0.001,0.041,0.958 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.925:0.001,0.073,0.926 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.849:0.007,0.137,0.856 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.32:0.684,0.313,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.182:0.826,0.165,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.058,0.94 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.126,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.912:0.003,0.082,0.915 0|0:0.137:0.868,0.127,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.851:0.008,0.133,0.859 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.975,0.024,0.001 0|0:0.135:0.87,0.126,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.953:0.249,0.549,0.202 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19764705 SNP-3.19763215. C A . PASS AR2=0.992;DR2=0.994;AF=0.348 GT:DS:GP 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.23:0.772,0.226,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.951:0.001,0.047,0.952 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.75:0.015,0.22,0.765 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.521:0.583,0.313,0.104 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.671:0.007,0.316,0.678 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.934:0.001,0.064,0.935 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19765552 SNP-3.19764062. A G . PASS AR2=0.978;DR2=0.982;AF=0.263 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.92,0.076,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.874:0.004,0.117,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.003,0.111,0.886 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.93:0.084,0.901,0.014 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.527:0.051,0.371,0.578 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.864,0.135,0.001 0|0:0:1,0,0 0|0:0.458:0.551,0.439,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.972,0.028,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0.001,0.999,0.001 0|1:0.729:0.29,0.69,0.019 0|0:0:1,0,0 1|0:1.137:0.142,0.58,0.279 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.363:0.637,0.363,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.131:0.193,0.483,0.324 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.018,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.787:0.001,0.212,0.788 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.215:0.013,0.76,0.228 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.863:0.005,0.126,0.868 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.003,0.108,0.889 0|0:0:1,0,0 0|0:0.045:0.958,0.04,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19766171 SNP-3.19764681. C A . PASS AR2=0.958;DR2=0.968;AF=0.283 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.964:0.247,0.543,0.21 0|0:0:1,0,0 1|1:1.777:0.008,0.206,0.785 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.596:0.044,0.317,0.639 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.922:0.101,0.877,0.023 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0.356:0.651,0.343,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.109:0.137,0.617,0.246 1|1:2:0,0,1 1|1:1.416:0.034,0.516,0.45 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.601:0.04,0.319,0.641 1|1:1.556:0.047,0.351,0.602 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.137:0.863,0.137,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.912:0.004,0.081,0.916 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.802:0.199,0.801,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.622:0.025,0.328,0.647 1|1:1.212:0.17,0.447,0.382 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.412:0.073,0.442,0.485 1|1:2:0,0,1 1|0:1.202:0.087,0.625,0.289 1|1:1.494:0.034,0.438,0.528 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.986:0,0.013,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.894,0.101,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.841:0.002,0.154,0.843 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.004,0.162,0.834 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.328:0.699,0.274,0.027 0|0:0:1,0,0 1|1:1.065:0.214,0.507,0.279 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.4:0.053,0.493,0.454 0|0:0:1,0,0 +3 19767442 SNP-3.19765952. C A . PASS AR2=0.96;DR2=0.968;AF=0.269 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.922,0.076,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.43:0.018,0.533,0.448 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.913:0.01,0.068,0.922 1|0:0.673:0.335,0.658,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.352:0.109,0.43,0.461 1|1:2:0,0,1 1|0:1.172:0.165,0.497,0.338 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.25:0.147,0.456,0.397 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.229:0.771,0.229,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.302:0.127,0.443,0.43 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.703:0.019,0.26,0.721 1|1:1.95:0.001,0.047,0.951 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|0:1.42:0.06,0.46,0.48 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.002,0.107,0.891 0|0:0:1,0,0 1|0:1.098:0.215,0.472,0.313 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.119:0.238,0.406,0.356 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.935:0.003,0.059,0.938 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.462:0.074,0.391,0.536 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.156:0.184,0.476,0.34 1|1:1.057:0.253,0.437,0.31 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19770398 SNP-3.19768908. C A . PASS AR2=0.99;DR2=0.993;AF=0.337 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.074:0.005,0.917,0.079 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.409:0.618,0.355,0.027 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.662:0.003,0.332,0.665 1|1:2:0,0,1 1|1:1.547:0.009,0.434,0.556 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.905:0.001,0.093,0.906 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.426:0.574,0.425,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.274:0.018,0.689,0.293 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19777683 SNP-3.19776193. A G . PASS AR2=0.984;DR2=0.986;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.928,0.064,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.882:0.004,0.111,0.886 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.003,0.09,0.907 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.019:0.072,0.837,0.091 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.859:0.001,0.139,0.86 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.651:0.354,0.642,0.004 0|1:0.913:0.152,0.783,0.065 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.108:0.171,0.551,0.278 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.192:0.159,0.49,0.351 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.004,0.126,0.87 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.003,0.111,0.886 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.002,0.089,0.909 1|1:1.875:0.004,0.117,0.879 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19777886 SNP-3.19776396. A G . PASS AR2=0.898;DR2=0.928;AF=0.234 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.571:0.522,0.386,0.093 1|1:1.235:0.189,0.386,0.424 0|0:0:1,0,0 0|0:0.198:0.813,0.176,0.011 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.053,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.6:0.496,0.409,0.096 1|1:2:0,0,1 0|0:0.45:0.598,0.355,0.048 0|0:0.5:0.564,0.373,0.063 1|1:1.377:0.127,0.37,0.503 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.224:0.789,0.198,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.268:0.75,0.232,0.018 0|0:0.246:0.769,0.215,0.015 1|1:2:0,0,1 0|0:0.235:0.779,0.207,0.014 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.238:0.776,0.209,0.015 1|1:2:0,0,1 0|0:0.249:0.767,0.218,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.757,0.225,0.017 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.789,0.198,0.013 0|0:0:1,0,0 0|0:0.189:0.821,0.168,0.01 0|0:0.223:0.789,0.198,0.013 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 0|0:0.487:0.579,0.355,0.066 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.363:0.653,0.331,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.325:0.699,0.277,0.024 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.489:0.583,0.344,0.073 0|0:0.258:0.745,0.251,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.241:0.779,0.201,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.552:0.52,0.407,0.073 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.599:0.006,0.388,0.606 1|1:1.832:0.009,0.15,0.841 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.544:0.532,0.392,0.076 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0.241:0.771,0.217,0.012 0|0:0:1,0,0 0|0:0.226:0.787,0.2,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.227:0.786,0.201,0.013 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.608:0.488,0.415,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.765:0.383,0.468,0.149 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.485:0.574,0.366,0.06 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.249:0.766,0.219,0.015 0|0:0:1,0,0 0|0:0.119:0.896,0.089,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.942,0.057,0.001 0|0:0.618:0.476,0.43,0.094 1|0:0.96:0.302,0.437,0.261 0|0:0.255:0.762,0.222,0.016 1|1:2:0,0,1 0|0:0.221:0.791,0.196,0.013 0|0:0.219:0.788,0.206,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.199:0.825,0.151,0.024 0|0:0.137:0.866,0.132,0.002 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19777977 SNP-3.19776487. C A . PASS AR2=0.966;DR2=0.973;AF=0.39 GT:DS:GP 0|0:0.157:0.85,0.143,0.007 1|1:2:0,0,1 0|0:0.094:0.908,0.089,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.085:0.917,0.081,0.002 0|0:0.105:0.9,0.094,0.006 0|1:0.597:0.431,0.541,0.028 1|0:1:0,1,0 0|0:0.199:0.817,0.167,0.016 1|1:2:0,0,1 0|0:0.061:0.94,0.059,0.001 0|0:0.231:0.804,0.16,0.035 1|1:2:0,0,1 0|0:0.015:0.986,0.014,0 0|0:0.051:0.95,0.048,0.001 0|0:0.033:0.968,0.031,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.041,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.104:0.9,0.097,0.004 0|0:0.128:0.877,0.118,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.127:0.877,0.118,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.13:0.874,0.121,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.114,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.13:0.875,0.121,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.124,0.005 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.542:0.573,0.311,0.115 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 1|1:2:0,0,1 0|0:0.146:0.859,0.136,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.522:0.019,0.44,0.541 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.358:0.66,0.321,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.651:0.003,0.344,0.654 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.882,0.113,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.159:0.08,0.68,0.239 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.079:0.922,0.077,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.783,0.201,0.015 0|1:0.781:0.391,0.437,0.172 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.883,0.113,0.005 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0.349:0.663,0.325,0.012 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.753,0.234,0.013 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.39:0.008,0.595,0.397 0|0:0:1,0,0 0|0:0.093:0.907,0.093,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19778078 SNP-3.19776588. C A . PASS AR2=0.955;DR2=0.964;AF=0.419 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.136:0.866,0.131,0.003 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.252:0.774,0.2,0.026 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.198:0.812,0.178,0.01 0|0:0:1,0,0 0|0:0.199:0.81,0.18,0.01 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0.258:0.76,0.222,0.018 0|0:0.319:0.699,0.282,0.019 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.26:0.757,0.226,0.017 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.304:0.719,0.258,0.023 0|0:0.309:0.715,0.261,0.024 0|0:0.3:0.722,0.255,0.022 0|0:0:1,0,0 0|0:0.303:0.72,0.257,0.023 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.018:0.983,0.017,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.179:0.826,0.169,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:1.556:0.012,0.421,0.568 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.308:0.716,0.26,0.024 0|0:0.006:0.994,0.006,0 0|0:0.001:0.999,0.001,0 1|0:0.354:0.677,0.292,0.031 0|0:0:1,0,0 0|0:0.246:0.768,0.218,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.308:0.716,0.26,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.308:0.716,0.26,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.753,0.23,0.017 1|1:1.603:0.007,0.383,0.61 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.716,0.26,0.024 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.304:0.719,0.258,0.023 0|0:0.18:0.833,0.155,0.013 1|0:0.942:0.249,0.559,0.192 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.29:0.731,0.248,0.021 0|0:0.309:0.715,0.261,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.923,0.074,0.003 0|0:0:1,0,0 0|0:0.045:0.957,0.042,0.002 0|1:0.308:0.716,0.26,0.024 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.93,0.066,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.716,0.261,0.024 0|0:0.308:0.716,0.26,0.024 0|0:0.308:0.716,0.26,0.024 0|0:0:1,0,0 0|0:0.336:0.692,0.28,0.028 0|0:0.017:0.983,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 +3 19785679 SNP-3.19784189. A G . PASS AR2=0.941;DR2=0.956;AF=0.462 GT:DS:GP 1|1:1.793:0.01,0.187,0.803 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.78:0.289,0.642,0.069 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.422:0.627,0.324,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.511:0.559,0.371,0.07 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.211:0.168,0.453,0.379 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.375:0.099,0.426,0.475 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.021,0.24,0.739 1|1:2:0,0,1 1|1:1.752:0.016,0.215,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.723:0.02,0.237,0.743 1|1:1.849:0.006,0.139,0.855 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.002,0.05,0.947 1|1:2:0,0,1 1|1:1.8:0.01,0.179,0.811 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.003,0.075,0.922 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.8:0.01,0.179,0.811 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.764:0.014,0.209,0.778 1|1:1.796:0.012,0.179,0.808 1|1:2:0,0,1 1|1:1.802:0.01,0.178,0.812 1|0:0.91:0.29,0.509,0.2 1|1:2:0,0,1 1|1:1.854:0.005,0.136,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.674:0.326,0.674,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.709:0.021,0.249,0.73 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.818:0.197,0.789,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.002,0.051,0.947 1|1:1.761:0.017,0.206,0.778 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.391:0.673,0.263,0.064 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.273:0.728,0.27,0.002 1|1:1.843:0.006,0.145,0.849 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.035,0.002 0|0:0:1,0,0 0|0:0.686:0.384,0.545,0.07 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.287:0.724,0.264,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.002,0.05,0.947 0|0:0:1,0,0 1|1:1.761:0.016,0.207,0.777 1|1:1.727:0.019,0.234,0.747 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.966:0.001,0.033,0.966 0|1:1:0,1,0 0|1:1.418:0.074,0.433,0.493 0|0:0.413:0.636,0.315,0.049 0|0:0:1,0,0 1|1:1.839:0.007,0.147,0.846 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.749:0.016,0.219,0.765 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.508:0.061,0.369,0.57 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.37:0.112,0.407,0.481 0|0:0:1,0,0 1|1:1.853:0.006,0.135,0.859 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.006,0.134,0.86 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.862:0.006,0.127,0.867 1|1:2:0,0,1 0|1:1.443:0.087,0.383,0.53 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.625:0.04,0.294,0.665 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19786568 SNP-3.19785078. C A . PASS AR2=0.998;DR2=0.999;AF=0.349 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:1.972:0.001,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.285:0.716,0.284,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 +3 19787590 SNP-3.19786100. C A . 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A G . PASS AR2=0.878;DR2=0.913;AF=0.221 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.069:0.207,0.517,0.276 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.148:0.856,0.139,0.005 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.596:0.437,0.531,0.032 0|0:0.559:0.515,0.411,0.074 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.608:0.506,0.381,0.114 1|1:1.746:0.042,0.169,0.789 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.635:0.471,0.424,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.557:0.523,0.397,0.08 1|1:2:0,0,1 0|1:0.777:0.383,0.456,0.161 1|0:0.625:0.47,0.434,0.095 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.276:0.745,0.233,0.021 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.333:0.697,0.274,0.03 0|0:0.409:0.634,0.323,0.043 0|0:0:1,0,0 0|0:0.357:0.676,0.291,0.033 0|0:0.366:0.667,0.3,0.033 0|0:0:1,0,0 0|0:0.407:0.635,0.323,0.042 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.337:0.691,0.281,0.028 0|0:0:1,0,0 0|0:0.362:0.672,0.294,0.034 0|0:0:1,0,0 0|0:0.059:0.942,0.056,0.002 0|0:0.322:0.703,0.272,0.025 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.108:0.898,0.096,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.718,0.256,0.026 0|0:0.34:0.69,0.281,0.03 0|0:0:1,0,0 0|0:0.308:0.715,0.262,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.395:0.644,0.316,0.04 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.578:0.002,0.417,0.58 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.278:0.743,0.236,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.184:0.181,0.453,0.366 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0.635:0.469,0.428,0.103 0|0:0.175:0.829,0.167,0.004 0|0:0:1,0,0 1|0:0.603:0.49,0.416,0.094 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.547:0.524,0.405,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.877:0.268,0.587,0.145 0|0:0.477:0.542,0.438,0.02 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.404:0.637,0.321,0.042 1|1:2:0,0,1 0|1:1.361:0.105,0.428,0.466 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.723:0.41,0.457,0.133 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.232:0.774,0.221,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.36:0.674,0.293,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.419:0.627,0.326,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.69,0.281,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.973 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.055:0.947,0.051,0.002 1|1:2:0,0,1 0|0:0.846:0.345,0.464,0.191 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.744,0.235,0.021 +3 19788877 SNP-3.19787387. C A . PASS AR2=0.988;DR2=0.99;AF=0.328 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.629:0.001,0.369,0.63 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0.099:0.905,0.091,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0.065:0.936,0.064,0.001 0|0:0:1,0,0 0|0:0.04:0.96,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.931,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.915,0.083,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.772:0.236,0.757,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.97:0,0.03,0.97 0|0:0.301:0.715,0.268,0.016 1|0:0.944:0.094,0.869,0.038 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.002,0.099,0.899 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|0:0.95:0.084,0.881,0.034 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.952,0.047,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.349:0.018,0.615,0.367 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 0|0:0.094:0.907,0.092,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.047,0.001 0|0:0.052:0.949,0.05,0.001 0|0:0.071:0.929,0.071,0 0|0:0:1,0,0 0|0:0.105:0.899,0.097,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 +3 19789181 SNP-3.19787691. C A . PASS AR2=0.996;DR2=0.997;AF=0.467 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.42:0.641,0.299,0.06 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.3:0.007,0.685,0.307 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19790313 SNP-3.19788823. C A . PASS AR2=0.992;DR2=0.993;AF=0.356 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.323:0.027,0.622,0.35 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:0.95:0.316,0.418,0.266 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.357:0.006,0.632,0.362 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.176:0.036,0.753,0.211 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.944,0.056,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.849,0.151,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19793580 SNP-3.19792090. C A . PASS AR2=0.964;DR2=0.973;AF=0.294 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|0:0.889:0.181,0.748,0.07 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0,0.051,0.949 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.607:0.047,0.299,0.654 1|0:1:0,1,0 1|1:1.197:0.185,0.434,0.382 0|1:1:0,1,0 1|1:1.32:0.109,0.463,0.429 1|1:2:0,0,1 1|1:1.963:0.002,0.033,0.965 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.85:0.002,0.146,0.852 1|1:1.747:0.022,0.209,0.769 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.618:0.036,0.31,0.654 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.397:0.093,0.417,0.49 1|0:1:0,1,0 1|1:1.583:0.043,0.331,0.626 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.756:0.014,0.217,0.769 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.766:0.013,0.208,0.779 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.239:0.156,0.449,0.395 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.493:0.062,0.383,0.555 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.376:0.642,0.34,0.018 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.645:0.035,0.284,0.68 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.652:0.035,0.277,0.688 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19794579 SNP-3.19793089. C A . PASS AR2=0.983;DR2=0.988;AF=0.311 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.814:0.011,0.163,0.825 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.522:0.055,0.368,0.577 1|1:1.701:0.023,0.252,0.724 1|1:1.616:0.039,0.307,0.655 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.62:0.035,0.311,0.655 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.375:0.641,0.343,0.016 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.639:0.034,0.293,0.673 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.171:0.829,0.171,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.788:0.005,0.202,0.793 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.747:0.018,0.217,0.765 0|0:0:1,0,0 +3 19795654 SNP-3.19794164. C A . PASS AR2=0.993;DR2=0.994;AF=0.33 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.911:0.003,0.083,0.914 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.839:0.005,0.15,0.845 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.005,0.121,0.874 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.39:0.624,0.362,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.798:0.007,0.189,0.805 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.857:0.001,0.141,0.858 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.002,0.048,0.95 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19796643 SNP-3.19795153. C A . PASS AR2=0.968;DR2=0.978;AF=0.301 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:0.951:0.158,0.733,0.109 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.552:0.048,0.352,0.6 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.722:0.019,0.241,0.74 1|1:1.669:0.029,0.272,0.698 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.599:0.042,0.318,0.641 0|0:0:1,0,0 1|1:1.648:0.03,0.292,0.678 0|1:1:0,1,0 1|1:1.652:0.032,0.283,0.685 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.63:0.035,0.3,0.665 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.479:0.066,0.39,0.544 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.785:0.248,0.719,0.033 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0,0.044,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.711:0.307,0.674,0.019 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.846:0.006,0.142,0.852 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.599:0,0.401,0.599 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.469:0.072,0.387,0.541 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.423:0.086,0.404,0.509 0|0:0:1,0,0 +3 19796959 SNP-3.19795469. A G . PASS AR2=0.994;DR2=0.995;AF=0.21 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.122:0.885,0.109,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 1|0:1:0,1,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0.046:0.955,0.045,0.001 0|0:0.05:0.951,0.049,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.927,0.073,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.888,0.11,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.907,0.088,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.017:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.072:0.929,0.07,0.001 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0.094:0.906,0.094,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19798380 SNP-3.19796890. C A . PASS AR2=0.996;DR2=0.997;AF=0.368 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.925,0.072,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.241:0.038,0.683,0.279 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.655:0.345,0.655,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.041:0.959,0.041,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19799905 SNP-3.19798415. A G . PASS AR2=0.969;DR2=0.976;AF=0.469 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.838:0.007,0.148,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.057:0.012,0.918,0.07 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.926:0.002,0.07,0.928 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 1|1:1.397:0.088,0.427,0.485 1|1:2:0,0,1 1|1:1.891:0.003,0.102,0.895 1|1:1.966:0,0.033,0.966 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.913:0.003,0.081,0.916 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.687:0.026,0.261,0.713 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.631:0.035,0.299,0.666 1|1:1.664:0.028,0.281,0.692 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.691:0.025,0.258,0.716 1|1:1.697:0.024,0.254,0.721 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.689:0.026,0.26,0.714 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:0.845:0.199,0.757,0.044 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.664:0.029,0.277,0.694 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.839:0.006,0.149,0.845 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.022,0.149,0.829 0|0:0.082:0.918,0.082,0 1|1:1.6:0.041,0.319,0.641 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.668:0.029,0.274,0.697 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.707:0.023,0.247,0.73 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:1.669:0.028,0.275,0.697 1|1:1.931:0.003,0.063,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.806:0.011,0.171,0.817 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.69:0.026,0.259,0.716 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.686:0,0.313,0.687 0|0:0:1,0,0 1|1:2:0,0,1 +3 19801185 SNP-3.19799695. C A . PASS AR2=0.997;DR2=0.997;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.052:0.949,0.05,0.001 0|0:0:1,0,0 0|0:0.142:0.867,0.124,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.076:0.031,0.862,0.107 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.963:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.024:0.068,0.84,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.892,0.108,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19805029 SNP-3.19803539. C A . PASS AR2=0.966;DR2=0.973;AF=0.279 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.556:0.047,0.35,0.603 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.483:0.026,0.465,0.509 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:1.416:0.105,0.374,0.521 1|1:2:0,0,1 1|1:1.655:0.022,0.301,0.677 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:1.537:0.051,0.362,0.588 1|1:1.927:0.002,0.069,0.929 1|1:1.929:0.002,0.068,0.931 1|1:2:0,0,1 1|1:1.927:0.002,0.07,0.928 1|1:1.907:0.004,0.085,0.911 1|1:1.853:0,0.147,0.853 1|1:1.949:0.003,0.045,0.952 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 0|0:0:1,0,0 1|1:1.911:0.002,0.086,0.913 0|0:0.015:0.985,0.015,0 1|1:1.344:0.05,0.555,0.394 1|1:1.711:0.027,0.234,0.738 1|0:1.198:0.133,0.535,0.331 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.638:0.009,0.344,0.647 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.719:0.03,0.221,0.749 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0.001,0.038,0.962 1|1:2:0,0,1 0|0:0.103:0.898,0.102,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 1|0:1.092:0.208,0.492,0.3 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.885:0.002,0.111,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.959:0.049,0.943,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.287:0.045,0.622,0.332 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.004,0.114,0.882 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.911:0,0.088,0.912 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19805536 SNP-3.19804046. C A . PASS AR2=0.99;DR2=0.992;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.713:0.017,0.253,0.73 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.985:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.49:0.017,0.477,0.506 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:1.927:0.001,0.071,0.928 0|0:0:1,0,0 1|1:1.875:0.002,0.122,0.876 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.767:0.008,0.218,0.774 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.075:0.079,0.768,0.153 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.028:0.972,0.028,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.969:0.001,0.03,0.969 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.883:0.004,0.109,0.887 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.878:0.002,0.118,0.88 0|0:0:1,0,0 +3 19808714 SNP-3.19807224. C A . PASS AR2=0.966;DR2=0.974;AF=0.281 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1.43:0.077,0.415,0.507 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.631:0.052,0.264,0.683 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.053:0.948,0.05,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.721:0.031,0.217,0.752 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.535:0.051,0.364,0.586 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.011,0.196,0.793 1|1:1.824:0.008,0.16,0.832 0|0:0:1,0,0 1|1:1.772:0.01,0.207,0.783 1|1:1.846:0.004,0.146,0.85 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.895:0.003,0.099,0.898 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.73:0.02,0.231,0.75 0|0:0:1,0,0 1|1:1.563:0.037,0.362,0.6 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.703:0.013,0.271,0.716 1|0:0.775:0.263,0.699,0.038 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.093:0.911,0.086,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.005,0.131,0.864 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.828:0.01,0.152,0.838 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.959:0.05,0.941,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.002,0.096,0.902 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.964:0.093,0.851,0.056 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.819:0.008,0.165,0.827 1|1:2:0,0,1 1|1:1.704:0.021,0.255,0.725 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.82:0.007,0.165,0.827 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.428:0.051,0.47,0.479 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.006,0.091,0.903 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19810983 SNP-3.19809493. A G . PASS AR2=0.978;DR2=0.98;AF=0.504 GT:DS:GP 1|1:1.826:0.007,0.161,0.832 0|0:0:1,0,0 1|1:1.955:0.001,0.042,0.956 0|0:0:1,0,0 1|1:1.905:0.004,0.088,0.908 1|1:2:0,0,1 1|1:1.901:0.003,0.092,0.905 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.891:0.003,0.102,0.895 1|1:1.927:0.003,0.067,0.93 1|1:1.903:0.003,0.091,0.906 1|1:2:0,0,1 1|1:1.891:0.004,0.102,0.894 0|0:0:1,0,0 1|1:1.891:0.003,0.102,0.895 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.905:0.003,0.089,0.908 1|1:2:0,0,1 1|1:1.911:0.002,0.084,0.913 1|1:1.897:0.004,0.095,0.901 0|0:0:1,0,0 1|1:1.895:0.003,0.099,0.898 1|1:1.89:0.004,0.103,0.894 1|1:1.891:0.004,0.101,0.895 1|1:1.894:0.003,0.1,0.897 1|1:1.891:0.004,0.102,0.895 1|1:1.884:0.005,0.107,0.888 1|1:2:0,0,1 1|1:1.891:0.004,0.101,0.895 1|1:1.924:0.002,0.073,0.925 1|1:1.942:0.002,0.053,0.944 1|1:1.89:0.003,0.103,0.893 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.865:0.004,0.127,0.869 1|1:1.907:0.004,0.085,0.911 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.852:0.004,0.14,0.856 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.005,0.137,0.858 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.04,0.959 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.893:0.003,0.101,0.896 1|1:1.902:0.004,0.091,0.906 1|1:1.907:0.004,0.086,0.911 1|1:1.894:0.003,0.099,0.898 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.894:0.003,0.1,0.897 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.896:0.003,0.098,0.899 0|0:0:1,0,0 1|1:1.899:0.003,0.096,0.902 1|1:1.899:0.003,0.096,0.901 1|1:2:0,0,1 1|1:1.893:0.003,0.101,0.896 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.002,0.109,0.889 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.021:0.979,0.021,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.904:0.003,0.089,0.908 1|1:1.895:0.003,0.098,0.899 1|1:1.909:0.002,0.086,0.912 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.808:0.005,0.181,0.813 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.01,0.158,0.832 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.904:0.003,0.091,0.907 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.9:0.005,0.09,0.905 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.893:0.003,0.1,0.896 1|1:1.909:0.004,0.083,0.913 1|1:1.909:0.003,0.085,0.912 1|1:1.909:0.004,0.083,0.913 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 +3 19811307 SNP-3.19809817. A G . PASS AR2=0.996;DR2=0.997;AF=0.527 GT:DS:GP 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:1.703:0,0.297,0.703 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.987:0,0.013,0.987 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0.001,0.039,0.96 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.039:0.015,0.931,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.199:0.012,0.776,0.212 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.03:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.941:0.002,0.055,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.97:0,0.029,0.97 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19815261 SNP-3.19813771. C A . PASS AR2=0.995;DR2=0.996;AF=0.325 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.023:0.977,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.964:0.001,0.035,0.965 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.949:0.001,0.048,0.95 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.959:0.001,0.04,0.959 0|1:1:0,1,0 0|0:0.074:0.926,0.074,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.95:0.001,0.048,0.951 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.899:0.002,0.096,0.901 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 0|0:0:1,0,0 1|0:1.406:0.019,0.557,0.424 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19816969 SNP-3.19815479. C A . PASS AR2=0.992;DR2=0.993;AF=0.358 GT:DS:GP 0|0:0:1,0,0 1|1:1.941:0.001,0.058,0.942 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|0:1:0,1,0 0|0:0.094:0.907,0.093,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.9,0.099,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.894:0.005,0.097,0.898 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.01:0.022,0.946,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.918:0.002,0.079,0.919 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.917:0.001,0.08,0.919 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:1.889:0.002,0.107,0.891 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.611:0.003,0.382,0.614 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.04:0.002,0.955,0.042 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.965:0,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.282:0.719,0.281,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19821451 SNP-3.19819961. A G . PASS AR2=0.888;DR2=0.919;AF=0.307 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.42:0.627,0.325,0.047 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1.189:0.009,0.794,0.198 0|0:0.435:0.617,0.33,0.053 0|1:1:0,1,0 0|1:1.085:0.025,0.866,0.109 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.7:0.424,0.452,0.124 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.706:0.421,0.453,0.126 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.715:0.415,0.455,0.13 1|0:0.735:0.4,0.465,0.135 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.737:0.399,0.465,0.136 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.782:0.37,0.478,0.152 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.383:0.62,0.378,0.003 1|0:0.567:0.513,0.406,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.513,0.406,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.735:0.4,0.465,0.135 1|1:2:0,0,1 0|1:0.596:0.493,0.418,0.089 1|1:2:0,0,1 0|0:0.112:0.888,0.112,0 1|0:0.735:0.4,0.465,0.135 1|0:0.567:0.513,0.406,0.081 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.735:0.4,0.465,0.135 0|0:0.395:0.655,0.294,0.051 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.568:0.513,0.406,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.568:0.513,0.406,0.081 0|0:0.743:0.395,0.467,0.138 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.938:0.322,0.419,0.26 0|0:0.336:0.664,0.336,0 1|1:2:0,0,1 0|0:0.736:0.4,0.464,0.136 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.612:0.482,0.424,0.094 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.513,0.406,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.735:0.4,0.465,0.135 1|1:2:0,0,1 0|0:0.4:0.652,0.297,0.052 1|0:0.4:0.651,0.297,0.052 0|0:0.399:0.652,0.296,0.052 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.4:0.652,0.297,0.052 0|0:0.399:0.653,0.295,0.052 0|0:0.445:0.609,0.337,0.054 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.445:0.609,0.337,0.054 1|1:2:0,0,1 0|0:0.112:0.896,0.096,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.513,0.406,0.081 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.501:0.564,0.371,0.065 0|1:0.884:0.297,0.522,0.181 0|0:0.629:0.517,0.337,0.146 0|0:0.383:0.661,0.294,0.045 0|0:0:1,0,0 1|1:2:0,0,1 +3 19823020 SNP-3.19821530. A G . PASS AR2=0.863;DR2=0.898;AF=0.237 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 1|1:1.703:0.02,0.258,0.722 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.151:0.851,0.147,0.002 1|0:1.068:0.083,0.766,0.151 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.179:0.823,0.176,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.426:0.092,0.391,0.518 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.264:0.138,0.459,0.403 0|0:0:1,0,0 1|1:1.707:0.028,0.237,0.735 0|1:1.037:0.098,0.768,0.135 1|1:1.4:0.103,0.394,0.503 0|0:0:1,0,0 1|1:1.704:0.029,0.239,0.732 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.584:0.481,0.455,0.064 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.683:0.432,0.453,0.115 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.63:0.47,0.43,0.1 1|1:2:0,0,1 0|1:0.693:0.429,0.449,0.122 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.614:0.489,0.407,0.104 0|0:0:1,0,0 0|0:0.769:0.379,0.474,0.147 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.785:0.37,0.475,0.155 1|1:2:0,0,1 0|0:0.674:0.444,0.438,0.118 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.717:0.389,0.504,0.106 0|0:0:1,0,0 0|0:0.243:0.772,0.212,0.015 0|0:0:1,0,0 0|1:0.915:0.244,0.596,0.159 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.684:0.433,0.449,0.117 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.861:0.311,0.517,0.172 0|1:0.687:0.436,0.441,0.123 1|0:0.741:0.401,0.456,0.142 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.92,0.08,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.04:0.961,0.039,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.589:0.494,0.423,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0.706:0.413,0.468,0.119 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.676:0.442,0.439,0.118 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 1|1:1.523:0.073,0.331,0.596 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.784:0.369,0.478,0.153 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.149:0.136,0.58,0.285 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.673:0.032,0.263,0.705 1|1:1.593:0.057,0.294,0.649 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.264:0.753,0.229,0.018 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.918:0.327,0.429,0.244 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.447:0.618,0.318,0.064 0|0:0:1,0,0 1|1:1.465:0.081,0.373,0.546 1|1:2:0,0,1 0|0:0.709:0.418,0.454,0.127 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.684:0.431,0.454,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.651,0.297,0.052 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.443:0.615,0.328,0.057 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.401:0.651,0.297,0.052 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.677:0.442,0.439,0.119 +3 19825097 SNP-3.19823607. C A . PASS AR2=0.988;DR2=0.991;AF=0.372 GT:DS:GP 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0.062:0.939,0.06,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.117:0.891,0.101,0.008 0|0:0:1,0,0 0|0:0.006:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.927:0,0.073,0.927 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.539:0.463,0.535,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.108:0.01,0.873,0.117 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.189:0.001,0.81,0.19 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.081:0.92,0.079,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.353:0.661,0.324,0.015 1|0:1.282:0,0.718,0.282 0|0:0.007:0.993,0.007,0 0|0:0.144:0.87,0.116,0.014 0|0:0:1,0,0 0|0:0.217:0.787,0.209,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.079:0.923,0.075,0.002 0|0:0.077:0.925,0.073,0.002 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19825898 SNP-3.19824408. A G . PASS AR2=0.992;DR2=0.994;AF=0.495 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.274:0.742,0.241,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1.12:0.215,0.45,0.335 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.605:0.471,0.454,0.075 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.3:0.007,0.685,0.308 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 +3 19827035 SNP-3.19825545. A G . PASS AR2=0.968;DR2=0.975;AF=0.283 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.164:0.844,0.148,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.907,0.089,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.959:0.001,0.04,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.21:0.799,0.192,0.009 0|0:0.174:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0.142:0.864,0.13,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.207:0.793,0.207,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:1.976:0.001,0.023,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:1.983:0,0.016,0.984 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.345:0.669,0.317,0.014 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.177:0.831,0.161,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.912:0.088,0.912,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.17:0.837,0.155,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.851,0.143,0.006 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0.456:0.621,0.303,0.076 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.831,0.161,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.842,0.151,0.007 0|0:0:1,0,0 0|0:0.165:0.842,0.151,0.007 0|0:0.162:0.845,0.149,0.007 0|0:0.191:0.818,0.172,0.009 0|0:0:1,0,0 0|0:0.169:0.838,0.155,0.007 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.8:0.001,0.199,0.8 0|0:0.214:0.793,0.199,0.007 0|0:0.137:0.869,0.125,0.006 0|0:0.23:0.781,0.208,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0.001,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.097:0.907,0.089,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.904,0.092,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.882,0.118,0 0|0:0.793:0.442,0.323,0.235 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19827178 SNP-3.19825688ct. C A . PASS AR2=0.997;DR2=0.997;AF=0.449 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.99:0.011,0.987,0.001 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.895:0.001,0.103,0.896 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:1.914:0.001,0.083,0.915 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.996:0.026,0.952,0.022 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.231:0.772,0.226,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.049,0.95 0|0:0:1,0,0 +3 19827206 SNP-3.19825716. C A . PASS AR2=0.991;DR2=0.992;AF=0.36 GT:DS:GP 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.058,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.114:0.889,0.107,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.478:0.625,0.272,0.103 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.973,0.027,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.929,0.069,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.025,0 1|1:2:0,0,1 0|0:0.003:0.997,0.003,0 0|0:0.053:0.948,0.052,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.009:0.991,0.008,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0.162:0.845,0.149,0.007 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.087:0.914,0.084,0.002 0|0:0.112:0.891,0.106,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.068,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.209:0.799,0.194,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.855,0.139,0.007 0|0:0:1,0,0 0|0:0.098:0.905,0.092,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19831789 SNP-3.19830299. C A . PASS AR2=0.999;DR2=0.999;AF=0.408 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.95:0.052,0.946,0.002 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.896:0.007,0.09,0.903 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19832788 SNP-3.19831298. C A . PASS AR2=0.977;DR2=0.98;AF=0.418 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.809,0.177,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.052:0.218,0.511,0.27 0|1:0.995:0.256,0.494,0.25 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.013:0.987,0.013,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.74:0.425,0.411,0.164 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.947,0.051,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.783:0.001,0.215,0.784 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.953:0.275,0.497,0.228 0|0:0:1,0,0 1|0:0.952:0.275,0.497,0.228 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.951:0.276,0.497,0.227 0|1:0.958:0.273,0.497,0.231 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.953:0.275,0.497,0.228 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19834159 SNP-3.19832669. A G . PASS AR2=0.996;DR2=0.997;AF=0.253 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.362:0.639,0.36,0.001 0|1:0.536:0.468,0.528,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19834518 SNP-3.19833028. C A . PASS AR2=0.984;DR2=0.987;AF=0.389 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.051:0.95,0.05,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.938,0.059,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.167:0.844,0.145,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.928,0.07,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.038:0.001,0.961,0.038 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.016:0.001,0.983,0.017 1|1:2:0,0,1 1|1:1.007:0.245,0.503,0.252 0|1:0.755:0.388,0.468,0.144 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0,0.142,0.858 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0.621:0.469,0.442,0.09 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.076:0.927,0.071,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.969,0.031,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.938,0.059,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.755:0.388,0.468,0.144 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19834644 SNP-3.19833154. C A . PASS AR2=0.957;DR2=0.969;AF=0.415 GT:DS:GP 0|0:0:1,0,0 1|1:1.782:0.011,0.196,0.793 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.651:0.027,0.294,0.678 1|1:2:0,0,1 1|1:1.669:0.036,0.258,0.706 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.03,0.969 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.914:0.086,0.914,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.543:0.048,0.361,0.591 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.84:0.007,0.147,0.847 0|1:1.503:0.063,0.371,0.566 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.556:0.044,0.357,0.6 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.554:0.057,0.332,0.611 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.597:0.041,0.322,0.637 1|1:1.61:0,0.39,0.61 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.593:0.042,0.323,0.635 1|1:2:0,0,1 1|0:1.043:0.18,0.596,0.224 1|1:2:0,0,1 1|1:1.778:0.017,0.188,0.795 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.003,0.184,0.813 1|1:2:0,0,1 1|1:1.634:0.033,0.301,0.667 1|1:1.698:0.032,0.239,0.729 1|1:1.598:0.039,0.323,0.637 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.932:0,0.067,0.932 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.496:0.065,0.373,0.561 1|1:1.89:0.008,0.094,0.898 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.537:0.059,0.345,0.596 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0.001,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.855:0.026,0.093,0.881 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.614:0.027,0.331,0.642 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.673:0.032,0.262,0.705 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.525:0.05,0.375,0.575 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.409:0.088,0.415,0.497 0|0:0:1,0,0 +3 19834860 SNP-3.19833370. A G . PASS AR2=1;DR2=1;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.983:0,0.017,0.983 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.994:0,0.005,0.994 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19834876 SNP-3.19833386. C A . PASS AR2=0.986;DR2=0.988;AF=0.394 GT:DS:GP 0|0:0.181:0.823,0.173,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.178:0.829,0.163,0.008 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.163:0.843,0.15,0.007 0|0:0.042:0.959,0.041,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.866,0.129,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.175:0.831,0.164,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.336:0.693,0.278,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.144:0.861,0.135,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.722:0,0.278,0.722 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.009,0.991 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.279:0.001,0.719,0.28 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.216:0.003,0.778,0.219 1|1:2:0,0,1 0|1:1.192:0.043,0.721,0.236 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.204:0.804,0.187,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.892,0.103,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.135:0.87,0.126,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19835332 SNP-3.19833842. A G . PASS AR2=0.967;DR2=0.978;AF=0.516 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.726:0.024,0.227,0.749 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0,0.203,0.796 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.765:0.013,0.209,0.778 1|1:1.593:0.018,0.372,0.61 1|1:1.153:0.308,0.231,0.461 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.683:0.32,0.677,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.878:0.002,0.118,0.88 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.817:0.007,0.168,0.825 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.517:0.058,0.366,0.576 1|1:1.553:0.05,0.348,0.603 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.941:0.002,0.056,0.943 1|1:1.917:0.002,0.079,0.919 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.457:0.072,0.398,0.53 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.535:0.02,0.425,0.555 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.524:0.056,0.363,0.581 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.857:0.005,0.133,0.862 1|1:1.74:0.027,0.206,0.767 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.565:0.047,0.341,0.612 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.652:0.035,0.277,0.688 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.563:0.048,0.341,0.611 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19836206 SNP-3.19834716. C A . PASS AR2=0.972;DR2=0.978;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.693:0.023,0.26,0.717 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:0.913:0.207,0.673,0.12 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:1.814:0.011,0.163,0.826 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.112:0.093,0.702,0.205 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.684:0.026,0.265,0.709 0|0:0:1,0,0 1|1:1.751:0.015,0.219,0.766 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.575:0.037,0.352,0.611 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.819:0.009,0.163,0.828 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.772:0.012,0.204,0.784 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.702:0.328,0.642,0.03 1|0:1:0,1,0 1|1:1.887:0.002,0.108,0.889 1|1:1.927:0.002,0.069,0.929 1|1:2:0,0,1 1|1:1.709:0.021,0.248,0.731 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.912:0.002,0.085,0.913 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.742:0.016,0.227,0.758 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.519:0.036,0.41,0.554 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.824:0.007,0.162,0.831 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.007,0.143,0.85 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.704:0.022,0.251,0.726 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.006,0.146,0.848 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.699:0.023,0.256,0.721 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19836924 SNP-3.19835434. C A . PASS AR2=0.999;DR2=0.999;AF=0.368 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.861:0,0.139,0.861 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.101:0.901,0.096,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19846674 SNP-3.19845184. C A . PASS AR2=0.986;DR2=0.989;AF=0.395 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.151:0.855,0.139,0.006 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.232:0.78,0.209,0.012 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.181:0.826,0.166,0.007 0|0:0.268:0.749,0.233,0.018 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.505:0.512,0.471,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.429:0.606,0.359,0.035 0|0:0.037:0.964,0.036,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.079:0.925,0.072,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.032:0.007,0.954,0.039 0|1:1.023:0.007,0.964,0.029 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.278:0.001,0.72,0.279 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.172:0.834,0.16,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.022:0.007,0.964,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.158:0.85,0.143,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.112:0.891,0.106,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.113:0.891,0.105,0.004 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19846719 SNP-3.19845229. C A . PASS AR2=1;DR2=1;AF=0.473 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19858269 SNP-3.19856779. C A . PASS AR2=1;DR2=1;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.066:0.934,0.065,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19858450 SNP-3.19856960. A G . PASS AR2=0.984;DR2=0.987;AF=0.263 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.179:0.827,0.168,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.623:0.035,0.308,0.658 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.867,0.127,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.782:0.004,0.21,0.786 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.832:0.003,0.162,0.835 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.624:0.023,0.329,0.648 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.104:0.896,0.104,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.001,0.093,0.907 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.138:0.139,0.584,0.277 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.115,0.004 1|0:1:0,1,0 0|0:0.164:0.842,0.153,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.629:0.003,0.366,0.631 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19859491 SNP-3.19858001. A G . PASS AR2=0.98;DR2=0.986;AF=0.216 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.497:0.565,0.372,0.063 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.123:0.877,0.122,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.294:0.735,0.235,0.03 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.959,0.04,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.111:0.891,0.108,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.021:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.327:0.695,0.283,0.022 0|0:0.115:0.886,0.112,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.508:0.543,0.406,0.051 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.491:0.515,0.479,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.348:0.677,0.299,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19860748 SNP-3.19859258. A G . PASS AR2=0.997;DR2=0.997;AF=0.267 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.93,0.07,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0.143,0.714,0.143 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.894,0.103,0.003 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19861709 SNP-3.19860219. C A . PASS AR2=0.974;DR2=0.979;AF=0.456 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.319:0.059,0.562,0.378 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.248:0.771,0.211,0.019 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.077:0.924,0.075,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.188:0.818,0.176,0.006 1|1:1.835:0.009,0.147,0.844 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.688:0.025,0.262,0.713 0|0:0:1,0,0 1|1:1.849:0.008,0.134,0.858 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.584:0.04,0.336,0.624 1|1:2:0,0,1 0|0:0.144:0.859,0.138,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.369:0.668,0.295,0.037 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.78:0.376,0.468,0.156 1|1:2:0,0,1 0|1:0.768:0.313,0.607,0.08 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.596:0.012,0.381,0.608 1|1:2:0,0,1 0|0:0.78:0.376,0.468,0.156 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.353:0.061,0.525,0.414 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:1.845:0.008,0.139,0.853 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.777:0.378,0.467,0.155 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.146:0.856,0.141,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:1.845:0.008,0.138,0.854 0|0:0:1,0,0 0|0:0.025:0.976,0.024,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19862076 SNP-3.19860586. A G . PASS AR2=0.999;DR2=0.999;AF=0.261 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.081:0.919,0.081,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.039:0.961,0.039,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19864083 SNP-3.19862593. A G . PASS AR2=0.964;DR2=0.972;AF=0.464 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:1.839:0.005,0.15,0.844 0|0:0.345:0.661,0.334,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.799:0.009,0.183,0.808 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.742:0.016,0.226,0.758 1|1:2:0,0,1 1|1:1.703:0.022,0.254,0.725 1|1:2:0,0,1 0|0:0.133:0.873,0.122,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.719:0.017,0.248,0.736 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.74:0.017,0.225,0.758 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.019,0.298,0.683 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.104:0.069,0.758,0.173 1|1:2:0,0,1 1|1:1.788:0.006,0.199,0.794 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.871:0.008,0.113,0.879 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.2:0.8,0.2,0 0|0:0:1,0,0 1|1:1.668:0.015,0.303,0.682 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.564:0.053,0.33,0.617 0|1:0.983:0.216,0.585,0.199 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.009,0.235,0.756 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0.001,0.044,0.956 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.822:0.006,0.167,0.828 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.736:0.017,0.229,0.754 1|1:1.611:0.03,0.329,0.641 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.511:0.064,0.361,0.575 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.73:0.022,0.226,0.752 0|1:0.899:0.122,0.858,0.02 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.006,0.164,0.83 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.883:0.003,0.111,0.886 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.003,0.093,0.904 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.015,0.213,0.772 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.382:0.088,0.442,0.47 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19864785 SNP-3.19863295. A G . PASS AR2=0.944;DR2=0.958;AF=0.265 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.177:0.83,0.163,0.007 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.495:0.059,0.388,0.554 0|0:0:1,0,0 0|0:0.297:0.723,0.257,0.02 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.177,0.009 0|0:0:1,0,0 0|0:0.335:0.69,0.285,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.273:0.744,0.239,0.017 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.196:0.812,0.18,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.766:0.015,0.205,0.781 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.66:0.44,0.46,0.1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.232:0.781,0.205,0.014 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.062:0.938,0.061,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.315:0.699,0.286,0.015 0|0:0.388:0.646,0.319,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.186:0.822,0.17,0.008 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.237:0.777,0.208,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.244:0.771,0.214,0.015 0|0:0.439:0.598,0.365,0.037 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.422:0.624,0.331,0.045 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.08:0.923,0.075,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.714,0.263,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.328:0.698,0.275,0.027 0|0:0:1,0,0 1|1:1.739:0.016,0.228,0.756 1|1:1.672:0.027,0.275,0.698 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.779,0.207,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.232:0.781,0.205,0.014 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.14:0.869,0.122,0.009 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.052:0.95,0.048,0.002 0|0:0.076:0.924,0.075,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.422:0.624,0.331,0.045 0|0:0.235:0.779,0.207,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.324:0.052,0.572,0.376 0|0:0.208:0.813,0.165,0.021 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19865578 SNP-3.19864088. C A . PASS AR2=0.987;DR2=0.989;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.946 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.064:0.937,0.061,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.124:0.88,0.116,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.341:0.662,0.335,0.003 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.031:0.969,0.031,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.893,0.107,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0.019:0.981,0.018,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.08:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0.337:0.67,0.324,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.215:0.112,0.561,0.327 1|1:2:0,0,1 1|0:1.108:0.084,0.724,0.192 1|0:1.19:0.02,0.77,0.21 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.007:0.993,0.007,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.623:0.034,0.309,0.657 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.92 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.041:0.959,0.04,0 0|0:0.002:0.998,0.002,0 0|0:0.024:0.976,0.024,0 1|1:2:0,0,1 0|0:0.007:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.949:0.001,0.05,0.949 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 +3 19866828 SNP-3.19865338. C A . PASS AR2=0.995;DR2=0.996;AF=0.352 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.019,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.825:0.003,0.17,0.827 1|1:2:0,0,1 1|1:1.804:0,0.196,0.804 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.805:0.206,0.783,0.011 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.917:0.001,0.081,0.918 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|1:0.709:0.294,0.703,0.003 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19866953 SNP-3.19865463. C A . PASS AR2=0.984;DR2=0.987;AF=0.354 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.81:0.004,0.181,0.815 0|0:0:1,0,0 0|0:0.089:0.913,0.085,0.002 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.595:0.64,0.125,0.235 0|0:0.084:0.918,0.081,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.082:0.92,0.079,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.028,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.057,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.027,0.972 1|1:2:0,0,1 1|1:1.949:0.001,0.05,0.95 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.978:0.053,0.916,0.031 1|1:2:0,0,1 1|1:1.922:0.001,0.076,0.923 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.052,0.948 0|0:0:1,0,0 1|1:1.926:0.002,0.071,0.928 1|1:2:0,0,1 1|1:1.989:0,0.01,0.989 0|0:0.023:0.977,0.023,0 0|1:0.901:0.118,0.864,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.003,0.066,0.931 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0,0.04,0.959 1|1:1.96:0,0.04,0.96 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:1.958:0,0.042,0.958 1|1:1.926:0.001,0.071,0.927 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0.001,0.039,0.959 0|0:0:1,0,0 0|0:0.037:0.963,0.037,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 0|0:0.075:0.926,0.072,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0.062:0.939,0.06,0.001 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.502:0.018,0.463,0.519 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.084:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19868815 SNP-3.19867325. C A . PASS AR2=0.996;DR2=0.996;AF=0.363 GT:DS:GP 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0.065:0.936,0.063,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.075:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.078:0.923,0.075,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.049:0.952,0.048,0 0|1:0.965:0.054,0.927,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.008:0.992,0.008,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.072:0.929,0.069,0.001 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0.078:0.924,0.075,0.002 0|0:0.076:0.926,0.073,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19869761 SNP-3.19868271. A G . PASS AR2=0.99;DR2=0.992;AF=0.258 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.89,0.103,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.041,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0.063:0.937,0.062,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.031:0.969,0.031,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.079:0.922,0.078,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 1|0:1.003:0.001,0.996,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.003:0,0.997,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.957:0.044,0.956,0.001 0|0:0.08:0.92,0.079,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.504:0,0.495,0.505 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.11:0.892,0.106,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.068:0.934,0.064,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.046,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.053:0.948,0.051,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.063:0.937,0.062,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.096:0.906,0.093,0.001 0|0:0:1,0,0 0|0:0.048:0.954,0.045,0.001 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 1|1:2:0,0,1 +3 19871920 SNP-3.19870430. A G . PASS AR2=0.994;DR2=0.995;AF=0.279 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.142,0.006 0|0:0.139:0.865,0.13,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.748:0.288,0.677,0.035 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.322:0.693,0.291,0.015 0|0:0.017:0.983,0.017,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.879,0.117,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.971:0.001,0.028,0.971 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19871999 SNP-3.19870509. C A . PASS AR2=0.937;DR2=0.947;AF=0.248 GT:DS:GP 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:1.087:0.191,0.532,0.278 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.093:0.198,0.511,0.291 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.916:0.003,0.079,0.918 1|0:1:0,1,0 1|1:1.465:0.053,0.429,0.518 0|0:0.321:0.689,0.301,0.01 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.729:0.013,0.246,0.741 1|0:1:0,1,0 0|0:0.766:0.381,0.473,0.147 1|0:1:0,1,0 1|0:0.751:0.393,0.463,0.144 0|1:0.928:0.283,0.505,0.211 0|0:0.586:0.487,0.44,0.073 1|0:0.443:0.576,0.405,0.019 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.971:0.26,0.51,0.231 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.726:0.407,0.46,0.133 0|1:1.242:0.115,0.528,0.357 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.345:0.072,0.512,0.417 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.076:0.203,0.517,0.279 0|1:1:0,1,0 0|0:0.97:0.26,0.51,0.23 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0.013:0.987,0.013,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.922:0.003,0.072,0.925 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.78:0.012,0.196,0.792 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.392:0.062,0.484,0.454 0|0:0:1,0,0 1|1:1.905:0.008,0.079,0.913 0|0:0:1,0,0 1|1:1.985:0,0.014,0.986 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.162:0.182,0.474,0.344 1|1:1.799:0.012,0.177,0.811 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.779:0.371,0.478,0.15 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19872532 SNP-3.19871042. C A . PASS AR2=0.975;DR2=0.979;AF=0.404 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.188:0.821,0.169,0.01 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.181:0.827,0.164,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.825,0.167,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.224:0.788,0.2,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.272:0.749,0.231,0.02 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.21:0.802,0.187,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.126:0.878,0.119,0.003 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.037:0.026,0.912,0.062 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 0|0:0.321:0.698,0.283,0.019 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.176:0.832,0.16,0.008 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.196:0.814,0.176,0.01 0|0:0.093:0.909,0.088,0.002 0|0:0:1,0,0 0|0:0.304:0.721,0.255,0.024 0|0:0.12:0.883,0.113,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.192:0.817,0.173,0.009 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.183:0.826,0.166,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.303:0.721,0.255,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.159:0.848,0.145,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.85,0.145,0.005 0|0:0.107:0.896,0.102,0.003 0|0:0.078:0.924,0.075,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.184:0.824,0.167,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.826,0.165,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.194:0.816,0.174,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.789,0.197,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.317:0.71,0.264,0.026 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19873068 SNP-3.19871578. C A . PASS AR2=0.914;DR2=0.934;AF=0.248 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.865,0.129,0.006 0|1:0.795:0.356,0.493,0.151 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.689:0.425,0.462,0.114 0|1:0.947:0.27,0.513,0.217 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.886,0.108,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.954:0.239,0.569,0.192 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.81,0.18,0.01 0|0:0.181:0.821,0.177,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.143:0.861,0.135,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.218:0.794,0.194,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.943:0.277,0.503,0.22 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.279:0.087,0.547,0.366 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.77:0.003,0.223,0.774 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.978:0,0.021,0.978 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.547:0.501,0.45,0.048 0|0:0:1,0,0 0|1:0.716:0.484,0.317,0.2 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.437:0.612,0.339,0.049 0|0:0:1,0,0 1|1:1.107:0.233,0.426,0.34 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.994:0.225,0.557,0.219 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.613:0.034,0.318,0.647 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.363:0.1,0.437,0.463 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.822:0.281,0.616,0.103 0|0:0.432:0.611,0.346,0.043 1|1:1.806:0.011,0.172,0.817 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.891:0.269,0.572,0.159 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.939:0.075,0.912,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.163:0.845,0.147,0.008 0|0:0.2:0.811,0.179,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.424:0.618,0.34,0.042 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.134:0.871,0.125,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.954,0.046,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.941:0.001,0.057,0.942 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.279:0.051,0.619,0.33 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.154:0.853,0.139,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.567:0.517,0.399,0.084 0|0:0.563:0.52,0.397,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.567:0.517,0.399,0.084 0|0:0.565:0.519,0.398,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.967:0,0.032,0.967 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.975 1|1:2:0,0,1 0|1:0.901:0.185,0.729,0.086 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.818,0.173,0.009 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19873396 SNP-3.19871906. C A . PASS AR2=0.995;DR2=0.996;AF=0.357 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.145,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.679:0,0.32,0.68 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.621:0.009,0.362,0.63 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.002,0.05,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.952:0.001,0.046,0.953 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.978:0,0.022,0.978 0|0:0:1,0,0 +3 19874408 SNP-3.19872918. C A . PASS AR2=0.967;DR2=0.977;AF=0.31 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.095:0.905,0.095,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.924:0,0.076,0.924 1|1:1.482:0.066,0.387,0.548 0|1:1.486:0.068,0.378,0.554 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.599:0.042,0.316,0.641 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.532:0.06,0.349,0.591 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.457:0.075,0.393,0.532 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.065:0.937,0.062,0.001 0|1:0.729:0.324,0.622,0.054 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.544:0.044,0.367,0.589 1|1:1.768:0.012,0.208,0.78 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.559:0.002,0.437,0.561 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.949:0.002,0.048,0.951 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.077,0.921 1|1:2:0,0,1 1|1:1.527:0.061,0.351,0.588 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.472:0.071,0.386,0.543 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.454:0.052,0.443,0.506 0|0:0:1,0,0 +3 19877262 SNP-3.19875772. A G . PASS AR2=0.88;DR2=0.902;AF=0.34 GT:DS:GP 0|1:0.936:0.28,0.503,0.216 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.428:0.597,0.378,0.025 1|1:1.097:0.201,0.501,0.298 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.909:0.323,0.444,0.233 1|1:2:0,0,1 0|1:1.158:0.173,0.497,0.331 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.053:0.221,0.504,0.274 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.13:0.152,0.566,0.282 1|1:1.347:0.108,0.437,0.455 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.436:0.082,0.4,0.518 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.512:0.046,0.396,0.558 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.118:0.193,0.496,0.311 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.188:0.156,0.499,0.345 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.212:0.162,0.465,0.374 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.247:0.144,0.465,0.391 1|1:2:0,0,1 0|1:1.156:0.186,0.472,0.342 0|0:1.189:0.171,0.469,0.36 0|1:1.079:0.225,0.471,0.304 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.799:0.338,0.526,0.137 1|1:1.293:0.135,0.438,0.427 0|0:0.586:0.554,0.306,0.14 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.069:0.219,0.493,0.288 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.076:0.216,0.491,0.292 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.094:0.217,0.473,0.31 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.365:0.113,0.41,0.478 0|0:0:1,0,0 1|1:1.441:0.083,0.393,0.524 1|1:1.648:0.032,0.288,0.68 1|1:1.447:0.092,0.368,0.539 0|1:1.018:0.252,0.477,0.271 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.15:0.181,0.489,0.33 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.333:0.113,0.44,0.446 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.577:0.039,0.345,0.616 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0,0.141,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.282:0.127,0.465,0.409 0|1:0.625:0.389,0.596,0.015 0|1:1.147:0.186,0.481,0.333 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.172:0.175,0.477,0.348 0|0:0:1,0,0 0|1:1.156:0.174,0.495,0.331 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.268:0.135,0.462,0.403 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.077:0.216,0.491,0.293 0|0:0:1,0,0 1|1:1.142:0.188,0.483,0.329 1|0:1.14:0.189,0.482,0.329 1|1:2:0,0,1 1|0:1.333:0.113,0.44,0.446 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.284:0.138,0.441,0.421 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.123:0.192,0.493,0.315 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.156:0.189,0.467,0.344 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.794:0.028,0.15,0.822 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19879414 SNP-3.19877924. A G . PASS AR2=0.99;DR2=0.992;AF=0.236 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.864:0.006,0.124,0.87 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.837:0.004,0.155,0.841 1|1:1.919:0.002,0.077,0.921 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.914:0.002,0.081,0.917 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.7:0.023,0.255,0.723 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.903:0.003,0.091,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.337:0.017,0.629,0.354 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.846:0.156,0.841,0.002 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.99,0.01,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.856:0.006,0.132,0.862 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.873:0.005,0.118,0.877 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19879842 SNP-3.19878352. C A . PASS AR2=0.995;DR2=0.995;AF=0.476 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.941,0.058,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.944,0.056,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.001,0.119,0.879 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.206:0.798,0.198,0.004 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.789:0.044,0.123,0.833 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.13:0.876,0.119,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.095:0.908,0.09,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.029:0.971,0.028,0 0|0:0:1,0,0 0|0:0.036:0.965,0.035,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19880957 SNP-3.19879467. C A . PASS AR2=0.999;DR2=0.999;AF=0.362 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 0|0:0.063:0.938,0.062,0 0|1:0.868:0.134,0.865,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 +3 19881090 SNP-3.19879600. C A . PASS AR2=0.987;DR2=0.988;AF=0.332 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.86:0.005,0.13,0.865 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.949:0.001,0.048,0.95 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.945:0.001,0.052,0.947 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0.001,0.049,0.949 1|1:2:0,0,1 1|1:1.942:0.001,0.055,0.943 1|1:1.902:0.002,0.094,0.904 1|1:1.834:0.003,0.16,0.837 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.002,0.065,0.933 0|0:0:1,0,0 1|1:1.872:0.004,0.12,0.876 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.879:0.004,0.114,0.883 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.073:0.93,0.067,0.003 0|1:0.868:0.14,0.852,0.008 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.005,0.123,0.872 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.017,0.302,0.681 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 1|1:1.888:0.003,0.106,0.891 1|1:1.829:0.007,0.157,0.836 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.764:0.034,0.168,0.798 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.942:0.001,0.056,0.943 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.921 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.955:0,0.045,0.955 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.883:0.004,0.109,0.887 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.888:0.003,0.106,0.891 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.033,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.905:0.003,0.09,0.908 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19885100 SNP-3.19883610. A G . PASS AR2=0.98;DR2=0.983;AF=0.242 GT:DS:GP 1|1:1.869:0.006,0.118,0.876 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.871:0.206,0.717,0.077 1|1:2:0,0,1 1|1:1.804:0.009,0.177,0.813 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0.012,0.173,0.815 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.903:0.003,0.092,0.906 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.67:0.028,0.274,0.698 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.693:0.021,0.266,0.713 1|1:1.584:0.038,0.341,0.621 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.18:0.061,0.699,0.24 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.003,0.127,0.869 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.003,0.097,0.9 0|1:1.152:0.094,0.66,0.246 1|1:1.907:0.001,0.091,0.908 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.892:0.003,0.102,0.895 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.887:0.003,0.106,0.89 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.726:0.019,0.236,0.745 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19885279 SNP-3.19883789. C A . PASS AR2=0.982;DR2=0.985;AF=0.379 GT:DS:GP 1|1:2:0,0,1 1|1:1.871:0.002,0.125,0.873 1|1:2:0,0,1 1|1:1.675:0.013,0.3,0.687 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.929:0.001,0.069,0.93 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.038:0.963,0.036,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.855,0.143,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.046:0.955,0.045,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.391:0.619,0.372,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.119:0.885,0.111,0.004 0|0:0.067:0.934,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.149:0.856,0.14,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.001,0.09,0.909 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.031:0.969,0.031,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.797:0.01,0.183,0.807 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.125:0.88,0.116,0.004 0|0:0.094:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.288:0.77,0.172,0.058 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.074:0.092,0.743,0.166 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0 0|0:0.088:0.915,0.083,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.032:0.968,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.09,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.951,0.048,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.094:0.907,0.092,0.001 0|0:0.356:0.653,0.338,0.009 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:1.997:0,0.003,0.997 1|1:1.997:0,0.003,0.997 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.015,0.085,0.9 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.094:0.909,0.089,0.003 +3 19885950 SNP-3.19884460. C A . PASS AR2=0.976;DR2=0.981;AF=0.406 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.764,0.219,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.141:0.874,0.11,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.354:0.649,0.348,0.003 0|0:0.204:0.806,0.183,0.011 0|0:0.277:0.743,0.238,0.019 0|0:0:1,0,0 0|0:0.311:0.712,0.265,0.023 0|1:1:0,1,0 0|0:0.284:0.737,0.243,0.02 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.315:0.708,0.268,0.024 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.279:0.747,0.227,0.026 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.022:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.86,0.135,0.005 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:1.978:0,0.022,0.978 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 1|1:1.984:0,0.016,0.984 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.975:0,0.024,0.975 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.555:0.502,0.441,0.057 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.235:0.778,0.208,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.152:0.855,0.139,0.006 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.15:0.856,0.138,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.301:0.733,0.234,0.033 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.3:0.727,0.246,0.027 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.13:0.874,0.121,0.004 0|0:0:1,0,0 0|0:0.131:0.874,0.122,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.913,0.085,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19886370 SNP-3.19884880. C A . PASS AR2=0.981;DR2=0.985;AF=0.376 GT:DS:GP 0|0:0.127:0.877,0.12,0.004 1|1:2:0,0,1 0|0:0.103:0.9,0.098,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.099:0.904,0.094,0.003 0|0:0:1,0,0 0|0:0.166:0.842,0.149,0.008 0|0:0:1,0,0 0|0:0.092:0.91,0.088,0.002 0|0:0.096:0.906,0.092,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.168:0.842,0.147,0.011 0|0:0.37:0.63,0.37,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.163:0.844,0.149,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.61:0.542,0.306,0.152 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.154:0.852,0.141,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.105:0.901,0.093,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.164:0.843,0.15,0.007 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.396:0.63,0.343,0.026 0|1:0.822:0.263,0.651,0.085 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.14:0.866,0.128,0.006 1|0:1:0,1,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.824,0.168,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.147:0.858,0.136,0.006 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19886609 SNP-3.19885119. C A . PASS AR2=0.987;DR2=0.989;AF=0.302 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:0.875:0.214,0.697,0.089 1|0:1:0,1,0 0|1:1:0,1,0 1|0:1.024:0.09,0.796,0.114 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.918:0.002,0.078,0.92 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.729:0.015,0.242,0.744 0|1:1:0,1,0 1|1:1.777:0.012,0.199,0.789 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.927:0.002,0.069,0.929 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.009,0.15,0.842 1|1:1.548:0.037,0.378,0.585 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.854:0.005,0.136,0.859 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.889:0.002,0.106,0.892 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.871:0.004,0.121,0.875 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.818:0.009,0.164,0.827 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.007:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19886701 SNP-3.19885211. C A . PASS AR2=0.988;DR2=0.992;AF=0.317 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:1.76:0.008,0.223,0.768 1|1:1.84:0.006,0.148,0.846 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.519:0.086,0.309,0.605 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.989:0,0.011,0.989 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 1|1:1.98:0,0.019,0.98 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.321:0.133,0.413,0.454 0|1:1:0,1,0 1|1:1.703:0.011,0.275,0.714 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.909:0.002,0.086,0.912 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.947:0.001,0.05,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19887075 SNP-3.19885585. A G . PASS AR2=0.99;DR2=0.992;AF=0.285 GT:DS:GP 1|1:2:0,0,1 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.771:0,0.229,0.771 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.995:0,0.005,0.995 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.225:0.781,0.213,0.006 0|0:0.435:0.607,0.351,0.042 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.126:0.879,0.116,0.005 0|0:0.105:0.898,0.1,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0.013:0.988,0.012,0 0|0:0.036:0.964,0.036,0 0|0:0.043:0.957,0.043,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.125:0.88,0.116,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 1|1:2:0,0,1 0|0:0.153:0.855,0.137,0.008 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.969,0.031,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 +3 19887290 SNP-3.19885800. A G . PASS AR2=0.902;DR2=0.923;AF=0.363 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.501:0.562,0.375,0.063 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.502:0.543,0.411,0.045 0|0:0.378:0.657,0.308,0.035 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.341:0.69,0.28,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.391:0.645,0.318,0.037 0|0:0.204:0.813,0.169,0.017 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.506:0.562,0.37,0.068 0|0:0.373:0.662,0.303,0.035 0|0:0.34:0.69,0.28,0.03 0|1:1:0,1,0 0|0:0.388:0.65,0.312,0.038 0|0:0.43:0.617,0.336,0.047 0|0:0:1,0,0 0|0:0.482:0.591,0.335,0.074 0|0:0.582:0.491,0.436,0.073 0|0:0.401:0.638,0.323,0.039 0|0:0.37:0.665,0.3,0.035 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.316:0.708,0.267,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.324:0.701,0.274,0.025 1|1:2:0,0,1 1|0:1.377:0.066,0.49,0.444 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.041:0.233,0.493,0.274 0|0:0:1,0,0 0|1:1.53:0.003,0.464,0.533 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.009:0.251,0.49,0.26 0|1:1.041:0.233,0.493,0.274 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:0.93:0.287,0.496,0.217 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.288:0.736,0.24,0.024 1|0:1.001:0.258,0.482,0.259 0|1:1.041:0.233,0.493,0.274 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.708,0.266,0.026 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.348:0.682,0.288,0.03 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.922:0.291,0.496,0.213 0|0:0.216:0.796,0.192,0.012 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.041:0.233,0.493,0.274 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.405:0.637,0.322,0.042 0|0:0.334:0.695,0.275,0.029 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.292:0.733,0.242,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.965:0.267,0.5,0.232 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.311:0.715,0.26,0.025 0|0:0:1,0,0 0|0:0.373:0.662,0.303,0.035 0|0:0:1,0,0 0|0:0.509:0.558,0.376,0.066 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.336:0.693,0.278,0.029 0|0:0.405:0.637,0.322,0.042 0|0:0.355:0.677,0.291,0.032 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.249:0.768,0.215,0.017 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.214:0.799,0.189,0.012 1|1:2:0,0,1 0|0:0.214:0.798,0.189,0.012 0|0:0:1,0,0 0|0:0.214:0.799,0.189,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.304:0.721,0.255,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.041:0.233,0.493,0.274 0|0:0.358:0.676,0.291,0.034 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19887468 SNP-3.19885978. C A . PASS AR2=0.999;DR2=0.999;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.929,0.07,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.088:0.914,0.085,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19887739 SNP-3.19886249. C A . PASS AR2=0.955;DR2=0.963;AF=0.408 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.126:0.878,0.119,0.003 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.494:0.533,0.441,0.027 0|0:0.145:0.86,0.135,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.124:0.881,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.072:0.93,0.069,0.001 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.145:0.859,0.136,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.487:0.595,0.322,0.083 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.091:0.911,0.087,0.002 0|0:0:1,0,0 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.085:0.917,0.081,0.002 0|0:0:1,0,0 0|0:0.074:0.927,0.072,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.073:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0.053:0.948,0.051,0.001 0|0:0.049:0.952,0.048,0.001 0|0:0.129:0.876,0.119,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.046:0.955,0.044,0.001 1|1:1.436:0.105,0.354,0.541 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.095:0.22,0.465,0.315 1|0:1:0,1,0 0|0:0:1,0,0 1|0:0.927:0.289,0.496,0.215 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.318:0.7,0.283,0.018 0|0:0.067:0.934,0.065,0.001 0|0:0.085:0.917,0.082,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.374:0.642,0.343,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.128:0.19,0.492,0.318 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.673:0.409,0.508,0.082 0|0:0.573:0.471,0.484,0.044 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.02:0.236,0.508,0.256 0|0:0.069:0.932,0.066,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.918:0.306,0.469,0.225 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.932,0.067,0.001 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.815:0.337,0.51,0.152 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.939:0.282,0.497,0.221 0|0:0.069:0.932,0.066,0.001 0|0:0.284:0.755,0.206,0.039 0|0:0:1,0,0 1|0:0.495:0.516,0.473,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.949:0.254,0.542,0.204 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19887755 SNP-3.19886265. C A . PASS AR2=0.995;DR2=0.996;AF=0.328 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.038,0.961 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.929:0.001,0.07,0.93 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.152:0.848,0.152,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.529:0.054,0.364,0.583 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.787:0.023,0.166,0.81 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19891404 SNP-3.19889914. A G . PASS AR2=0.968;DR2=0.98;AF=0.299 GT:DS:GP 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.798,0.173,0.029 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.169:0.839,0.152,0.009 0|0:0:1,0,0 0|0:0.128:0.878,0.117,0.005 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.531:0.48,0.508,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.346:0.135,0.384,0.481 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.116:0.889,0.106,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.124:0.303,0.271,0.426 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.27:0.17,0.39,0.44 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.94:0.152,0.757,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.137:0.867,0.129,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.992:0,0.008,0.992 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.175:0.836,0.152,0.012 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.105:0.897,0.1,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.108:0.894,0.105,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.115:0.888,0.109,0.003 0|0:0.214:0.793,0.2,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.879:0.004,0.112,0.884 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19892516 SNP-3.19891026. C A . PASS AR2=0.956;DR2=0.964;AF=0.297 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.005,0.123,0.872 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0.015,0.219,0.767 0|0:0:1,0,0 1|1:1.872:0.005,0.119,0.877 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.167:0.116,0.6,0.284 1|1:2:0,0,1 1|1:1.659:0.028,0.286,0.687 0|0:0:1,0,0 1|1:1.776:0.01,0.203,0.787 1|1:1.691:0.025,0.259,0.716 1|1:1.701:0.023,0.252,0.725 1|1:1.764:0.012,0.212,0.776 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:1.884:0.003,0.109,0.888 1|0:1.461:0.132,0.276,0.592 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.118:0.05,0.782,0.168 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.884:0.004,0.109,0.888 0|0:0:1,0,0 0|0:0.671:0.428,0.473,0.099 0|0:0:1,0,0 1|1:1.452:0.037,0.474,0.489 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.059:0.943,0.056,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.736:0.018,0.229,0.754 1|1:1.907:0.003,0.088,0.91 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.223:0.1,0.578,0.322 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.299:0.044,0.614,0.343 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.056:0.945,0.053,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 0|0:0.037:0.963,0.037,0 0|0:0.047:0.953,0.046,0.001 0|0:0.045:0.956,0.044,0 1|1:2:0,0,1 1|1:1.841:0.007,0.145,0.848 1|1:2:0,0,1 1|1:1.958:0.001,0.039,0.96 0|0:0.039:0.962,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.88:0.004,0.113,0.883 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.602:0.028,0.342,0.63 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.896:0.003,0.099,0.898 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:1.895:0.003,0.099,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.95:0.002,0.047,0.952 0|0:0:1,0,0 1|1:1.854:0.006,0.135,0.859 1|1:1.896:0.003,0.098,0.899 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.238:0.057,0.649,0.294 1|1:1.859:0.006,0.129,0.865 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.12:0.087,0.705,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.755:0.013,0.219,0.768 0|0:0.038:0.963,0.037,0 +3 19892740 SNP-3.19891250. C A . PASS AR2=0.962;DR2=0.969;AF=0.278 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.949:0.148,0.754,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.532:0.041,0.386,0.573 1|1:2:0,0,1 1|0:1.03:0.213,0.545,0.242 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.102:0.176,0.546,0.278 1|1:1.625:0.035,0.304,0.661 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.628:0.03,0.313,0.657 0|1:1.352:0.096,0.456,0.448 1|1:2:0,0,1 1|1:1.76:0.008,0.225,0.768 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.762:0.01,0.219,0.772 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.822:0.023,0.133,0.844 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.765:0.017,0.202,0.782 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.697:0.023,0.258,0.719 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.906:0.002,0.09,0.908 1|1:1.932:0.002,0.065,0.934 1|1:1.901:0.002,0.094,0.903 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0.002,0.035,0.963 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.824:0.349,0.478,0.173 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.772:0.017,0.194,0.789 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.409:0.044,0.504,0.453 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.804:0.391,0.415,0.194 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.933:0.002,0.064,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.616:0.033,0.317,0.649 0|0:0:1,0,0 +3 19895384 SNP-3.19893894. A G . PASS AR2=0.872;DR2=0.903;AF=0.312 GT:DS:GP 0|1:0.555:0.494,0.456,0.05 0|0:0:1,0,0 0|0:0.441:0.623,0.313,0.064 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.964:0.275,0.485,0.239 0|1:1.059:0.232,0.478,0.291 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.996:0.209,0.586,0.205 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.9:0.274,0.551,0.175 0|1:0.95:0.243,0.565,0.192 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.423:0.051,0.475,0.474 0|0:0:1,0,0 1|1:1.69:0.013,0.283,0.704 1|1:2:0,0,1 1|0:1.456:0.058,0.429,0.513 1|1:1.287:0.121,0.471,0.408 0|1:1.398:0.093,0.416,0.491 0|0:0:1,0,0 1|1:1.227:0.148,0.478,0.375 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.404:0.654,0.287,0.058 0|0:0:1,0,0 1|1:1.171:0.175,0.479,0.346 1|1:1.17:0.176,0.479,0.346 1|1:2:0,0,1 1|0:1.29:0.129,0.453,0.418 0|0:0:1,0,0 1|1:1.325:0.122,0.432,0.447 1|1:1.294:0.129,0.447,0.424 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.284:0.756,0.205,0.04 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.258:0.781,0.179,0.039 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.322:0.124,0.43,0.446 0|1:1.209:0.161,0.468,0.37 1|0:0.89:0.281,0.547,0.172 1|1:2:0,0,1 1|0:1.167:0.169,0.495,0.336 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.285:0.724,0.266,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.344:0.672,0.312,0.016 1|0:1.115:0.201,0.483,0.316 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.935,0.061,0.004 0|0:0:1,0,0 1|1:1.475:0.077,0.37,0.552 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:1.53:0.056,0.357,0.586 0|0:0.031:0.969,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.704:0.324,0.648,0.028 0|0:0:1,0,0 1|1:1.395:0.074,0.457,0.469 0|0:0.291:0.747,0.215,0.038 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|1:1.264:0.122,0.492,0.386 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.036:0.965,0.034,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.906:0.322,0.45,0.228 1|1:2:0,0,1 1|1:1.711:0.016,0.257,0.727 0|0:0.069:0.933,0.066,0.002 1|1:2:0,0,1 0|0:0.3:0.741,0.219,0.041 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.253:0.135,0.476,0.389 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.21:0.156,0.478,0.366 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.38:0.1,0.42,0.48 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.059:0.942,0.058,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 1|1:1.395:0.094,0.418,0.489 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.138:0.191,0.48,0.329 1|1:1.617:0.043,0.296,0.661 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.453:0.075,0.397,0.528 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.326:0.122,0.431,0.448 1|1:1.895:0.005,0.095,0.9 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.39:0.68,0.25,0.07 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.875:0.007,0.111,0.882 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.023,0 1|1:1.433:0.089,0.389,0.522 +3 19899833 SNP-3.19898343. C A . PASS AR2=0.969;DR2=0.978;AF=0.427 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.203:0.8,0.196,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.01:0.02,0.95,0.03 1|1:1.475:0.072,0.381,0.547 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.125:0.876,0.122,0.001 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.842:0.007,0.145,0.849 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.627:0.041,0.291,0.668 1|1:1.852:0.006,0.137,0.857 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.803:0.01,0.177,0.813 1|1:1.859:0.001,0.139,0.86 0|1:0.851:0.21,0.728,0.062 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.404:0.092,0.413,0.496 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.957,0.041,0.001 1|1:1.933:0.002,0.063,0.935 1|1:1.596:0.042,0.319,0.638 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.855:0.011,0.124,0.865 0|1:1.404:0.092,0.413,0.496 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.673:0.029,0.268,0.702 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.404:0.092,0.413,0.496 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.789:0.001,0.209,0.79 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.938:0.002,0.058,0.94 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.485:0.049,0.418,0.534 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0.063:0.939,0.059,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.94:0.002,0.057,0.941 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.192:0.829,0.15,0.021 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19901647 SNP-3.19900157. C A . PASS AR2=0.958;DR2=0.965;AF=0.296 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.377:0.085,0.453,0.462 1|1:2:0,0,1 1|1:1.096:0.209,0.486,0.305 1|1:2:0,0,1 0|1:0.908:0.17,0.752,0.078 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.006:0.248,0.498,0.254 1|0:1.023:0.243,0.491,0.266 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.984:0.261,0.493,0.245 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:0.754:0.313,0.62,0.067 0|0:0:1,0,0 1|1:1.908:0.001,0.089,0.909 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.047:0.953,0.047,0 1|1:1.944:0.001,0.054,0.945 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1.216:0.127,0.53,0.343 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.619:0.023,0.336,0.641 1|1:1.613:0.037,0.313,0.65 0|0:0.343:0.687,0.283,0.03 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.866:0.004,0.127,0.87 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.721,0.258,0.021 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.018:0.243,0.496,0.261 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.343:0.687,0.283,0.03 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.821:0.01,0.158,0.831 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.919:0.002,0.078,0.92 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.343:0.687,0.283,0.03 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.119:0.183,0.514,0.302 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.601:0.023,0.353,0.624 0|0:0:1,0,0 +3 19902294 SNP-3.19900804. C A . PASS AR2=0.976;DR2=0.983;AF=0.341 GT:DS:GP 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.815:0,0.184,0.816 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.015:0.985,0.015,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.324:0.708,0.261,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.902:0.003,0.091,0.905 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.89:0.003,0.103,0.893 1|1:1.8:0.008,0.184,0.808 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.058:0.942,0.058,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.004,0.133,0.863 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0.474:0.583,0.361,0.056 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.066,0.933 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.423:0.62,0.336,0.043 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.474:0.583,0.361,0.056 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.474:0.583,0.361,0.056 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.474:0.583,0.361,0.056 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.961:0,0.038,0.961 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.086:0.914,0.086,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.474:0.583,0.361,0.056 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.927:0.001,0.071,0.928 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.815:0.008,0.169,0.823 0|0:0:1,0,0 +3 19904535 SNP-3.19903045. A G . PASS AR2=0.958;DR2=0.973;AF=0.346 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.044,0.249,0.708 1|1:2:0,0,1 1|1:1.89:0.015,0.08,0.905 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.531:0.058,0.353,0.589 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.106:0.901,0.093,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.528:0.003,0.466,0.531 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.373:0.111,0.405,0.484 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.374:0.111,0.404,0.485 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.672:0.031,0.267,0.702 1|1:2:0,0,1 1|1:1.444:0.086,0.385,0.53 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.887:0.005,0.102,0.893 1|1:1.373:0.111,0.405,0.484 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.724:0.021,0.235,0.744 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.373:0.111,0.405,0.484 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.373:0.111,0.405,0.484 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.544:0.038,0.38,0.582 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.373:0.111,0.405,0.484 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.373:0.111,0.405,0.484 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.226:0.799,0.175,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19905964 SNP-3.19904474. C A . PASS AR2=1;DR2=1;AF=0.34 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.015,0.984 0|0:0:1,0,0 +3 19906300 SNP-3.19904810. C A . PASS AR2=0.979;DR2=0.985;AF=0.422 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.792:0.011,0.187,0.803 0|0:0:1,0,0 1|1:1.787:0.012,0.188,0.8 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.836:0.007,0.151,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.768:0.014,0.203,0.782 0|0:0.273:0.731,0.264,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.789:0.011,0.19,0.799 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.794:0.011,0.184,0.805 0|0:0.004:0.996,0.004,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.08:0.922,0.076,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.3:0.141,0.418,0.441 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.972:0.169,0.689,0.141 0|0:0.552:0.549,0.349,0.102 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.405:0.114,0.367,0.519 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.214:0.796,0.193,0.01 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.18:0.82,0.18,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.98:0.129,0.762,0.109 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19906507 SNP-3.19905017. A G . PASS AR2=0.982;DR2=0.985;AF=0.53 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.054:0.234,0.478,0.288 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.943:0.001,0.056,0.943 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:1.957:0.001,0.042,0.958 1|1:1.919:0.002,0.078,0.921 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.658:0.008,0.326,0.666 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:1.999:0,0.001,0.999 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0:1,0,0 1|1:1.948:0,0.052,0.948 1|1:1.909:0.001,0.089,0.91 1|1:1.874:0.005,0.116,0.879 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.946:0.001,0.053,0.946 1|1:1.938:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.971:0,0.029,0.971 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.74:0.01,0.241,0.75 1|1:1.917:0.001,0.081,0.918 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0.032,0.176,0.792 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.909:0.001,0.089,0.91 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.49:0.57,0.37,0.06 0|1:1.202:0.17,0.458,0.372 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.907:0.004,0.086,0.91 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.175:0.826,0.173,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.867:0.005,0.123,0.872 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.776:0.011,0.201,0.787 0|0:0:1,0,0 1|1:1.971:0,0.028,0.972 1|1:1.952:0.001,0.047,0.952 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.067,0.932 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.962:0,0.037,0.963 +3 19906601 SNP-3.19905111. C A . PASS AR2=0.999;DR2=0.999;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.008:0.992,0.008,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|0:0.808:0.192,0.808,0 0|0:0.096:0.904,0.096,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19906624 SNP-3.19905134. A G . PASS AR2=1;DR2=1;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19907698 SNP-3.19906208. C A . PASS AR2=0.998;DR2=0.999;AF=0.334 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.916:0.002,0.081,0.917 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.87:0.013,0.103,0.884 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.932:0.001,0.065,0.933 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19908511 SNP-3.19907021. A G . PASS AR2=0.999;DR2=0.999;AF=0.251 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.904:0.003,0.09,0.907 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.025,0.975 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.013:0.987,0.013,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.021,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.995:0,0.005,0.995 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19908967 SNP-3.19907477. A G . PASS AR2=0.989;DR2=0.991;AF=0.225 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.854:0.005,0.136,0.859 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.551:0.012,0.426,0.562 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.173:0.834,0.158,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.82,0.171,0.009 0|0:0.166:0.841,0.152,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.101:0.902,0.095,0.003 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.177:0.831,0.16,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.222:0.8,0.178,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19909565 SNP-3.19908075. A G . PASS AR2=0.979;DR2=0.983;AF=0.477 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.731:0.408,0.454,0.138 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.662:0.04,0.258,0.702 1|1:2:0,0,1 1|0:1.677:0.027,0.269,0.704 1|1:1.623:0.045,0.286,0.669 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.866:0.323,0.488,0.189 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.855:0.006,0.132,0.862 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.886:0.004,0.106,0.89 1|0:0.886:0.31,0.494,0.196 1|1:1.623:0.037,0.302,0.66 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.969:0,0.031,0.969 1|1:1.952:0.001,0.047,0.953 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0.001 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.097:0.904,0.096,0.001 0|0:0.047:0.953,0.046,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.66:0.038,0.264,0.698 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.748:0.011,0.23,0.759 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.962:0,0.037,0.962 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.869:0.005,0.121,0.874 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.859:0.006,0.128,0.866 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19909852 SNP-3.19908362. C A . PASS AR2=0.979;DR2=0.984;AF=0.32 GT:DS:GP 0|0:0:1,0,0 1|1:1.95:0.001,0.049,0.95 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.726:0.023,0.229,0.749 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.481:0.022,0.476,0.502 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.101:0.901,0.097,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.033:0.967,0.032,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0.037:0.963,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.987,0.013,0 0|0:0.03:0.97,0.03,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.239:0.218,0.325,0.457 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.826:0.007,0.16,0.833 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.823:0.008,0.16,0.831 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.813:0.007,0.174,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.164:0.84,0.156,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.053:0.947,0.053,0 1|1:1.952:0.001,0.046,0.953 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.818:0.007,0.167,0.826 1|1:2:0,0,1 1|0:0.941:0.071,0.916,0.013 0|0:0.319:0.701,0.279,0.02 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.972:0,0.027,0.973 1|1:2:0,0,1 1|1:1.93:0.001,0.068,0.931 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.866:0.007,0.12,0.873 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.714:0.022,0.242,0.736 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.919:0.002,0.078,0.92 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.867:0.003,0.127,0.87 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.022,0.978 1|1:1.974:0,0.025,0.974 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19917770 SNP-3.19916280. C A . PASS AR2=0.994;DR2=0.995;AF=0.354 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.972:0,0.028,0.972 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.051:0.951,0.048,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.855:0.148,0.85,0.002 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.996:0,0.004,0.996 0|0:0.316:0.687,0.31,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.005:0.995,0.005,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.022:0.019,0.941,0.041 0|0:0.482:0.611,0.296,0.093 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.054:0.946,0.054,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.018,0.982 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.017,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19917982 SNP-3.19916492. A G . PASS AR2=0.958;DR2=0.969;AF=0.338 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.632:0.462,0.444,0.094 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.759:0.386,0.469,0.145 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.303:0.72,0.256,0.024 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.277:0.744,0.234,0.021 1|1:2:0,0,1 0|0:0.528:0.543,0.387,0.071 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.219:0.794,0.193,0.013 0|0:0.189:0.823,0.166,0.012 0|0:0:1,0,0 0|0:0.578:0.513,0.397,0.09 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.557:0.518,0.408,0.075 0|0:0.211:0.807,0.176,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.953,0.047,0.001 0|0:0:1,0,0 0|0:0.053:0.947,0.052,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.033:0.967,0.033,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.314:0.73,0.226,0.044 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.751:0.378,0.493,0.129 0|0:0:1,0,0 0|0:0.138:0.862,0.138,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.202:0.815,0.169,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.03:0.97,0.029,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.03:0.97,0.029,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.224:0.79,0.197,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.2:0.813,0.174,0.013 0|0:0:1,0,0 0|0:0.324:0.702,0.273,0.026 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.256:0.762,0.219,0.018 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.211:0.803,0.182,0.014 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.203:0.81,0.177,0.013 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.185:0.827,0.161,0.012 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.347:0.686,0.282,0.032 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19918171 SNP-3.19916681. C A . PASS AR2=0.964;DR2=0.97;AF=0.403 GT:DS:GP 0|0:0:1,0,0 1|1:1.813:0.01,0.168,0.822 0|0:0:1,0,0 1|1:1.88:0.003,0.113,0.883 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.258:0.141,0.459,0.399 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.868:0.003,0.125,0.871 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.053:0.951,0.046,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.97:0.001,0.029,0.97 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.924:0.003,0.07,0.927 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.01:0.99,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.992:0,0.008,0.992 1|0:1.26:0.141,0.458,0.401 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.03,0.969 1|1:2:0,0,1 1|1:1.235:0.146,0.472,0.381 0|1:1:0,1,0 0|1:1.247:0.145,0.463,0.392 1|0:1.247:0.141,0.47,0.389 1|1:2:0,0,1 0|1:1.257:0.141,0.461,0.398 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.251:0.145,0.459,0.396 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.873:0.003,0.121,0.876 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.475:0.061,0.404,0.536 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.578:0.033,0.357,0.61 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.013,0.987 1|1:1.879:0.003,0.116,0.881 1|0:1:0,1,0 1|1:1.934:0.001,0.065,0.934 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.914:0.002,0.082,0.916 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.923:0.002,0.073,0.925 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.194:0.165,0.475,0.36 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.931:0.002,0.066,0.933 1|1:1.74:0.015,0.231,0.755 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.047:0.202,0.549,0.249 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.474:0.022,0.481,0.496 0|0:0:1,0,0 +3 19918273 SNP-3.19916783. A G . PASS AR2=0.86;DR2=0.892;AF=0.236 GT:DS:GP 0|0:0.695:0.429,0.448,0.124 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.043:0.957,0.042,0.001 0|1:1.088:0.201,0.511,0.289 0|0:0.415:0.619,0.348,0.033 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.085:0.22,0.476,0.305 0|0:0.277:0.745,0.233,0.022 0|0:0.455:0.588,0.369,0.043 0|0:0.248:0.766,0.219,0.014 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.56:0.493,0.455,0.053 0|1:1.031:0.236,0.498,0.266 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.131:0.874,0.122,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.909,0.088,0.003 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.223:0.787,0.202,0.01 0|0:0.183:0.826,0.166,0.008 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.45:0.571,0.408,0.021 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.579:0.49,0.442,0.069 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.532:0.54,0.389,0.072 1|1:2:0,0,1 0|0:0.425:0.587,0.402,0.012 0|0:0.002:0.998,0.002,0 0|1:0.611:0.486,0.417,0.097 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.901:0.005,0.09,0.905 0|0:0.698:0.436,0.429,0.134 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.345:0.11,0.434,0.455 0|1:0.95:0.051,0.948,0.001 0|0:0.299:0.722,0.257,0.021 0|0:0:1,0,0 0|0:0.108:0.896,0.1,0.004 1|1:2:0,0,1 1|0:1.101:0.18,0.539,0.281 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.842,0.151,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.605:0.477,0.441,0.082 0|1:0.967:0.251,0.531,0.218 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.698:0.304,0.694,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.336:0.678,0.308,0.014 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.159:0.162,0.516,0.322 0|0:0:1,0,0 0|0:0.125:0.877,0.121,0.002 0|1:1.137:0.18,0.504,0.316 0|0:0.033:0.967,0.032,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.071:0.93,0.069,0.001 1|1:2:0,0,1 0|0:0.483:0.523,0.471,0.006 0|1:1.064:0.16,0.616,0.224 1|1:1.044:0.2,0.556,0.244 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.593:0.461,0.486,0.053 1|1:2:0,0,1 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.286:0.721,0.272,0.007 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.009:0.991,0.009,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.197:0.816,0.17,0.013 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.121:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.419:0.598,0.385,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.452:0.554,0.439,0.007 0|0:0:1,0,0 0|0:0.413:0.6,0.386,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.86:0.288,0.565,0.147 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.17:0.163,0.504,0.333 0|0:0.1:0.903,0.093,0.003 0|0:0:1,0,0 1|0:1.008:0.249,0.494,0.257 0|0:0.185:0.829,0.158,0.013 0|0:0.39:0.632,0.346,0.022 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.071:0.929,0.071,0 0|0:0.307:0.716,0.261,0.023 0|0:0:1,0,0 0|0:0.21:0.801,0.189,0.011 0|1:0.955:0.281,0.484,0.236 0|0:0:1,0,0 1|0:0.614:0.425,0.535,0.04 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.72:0.395,0.49,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.339:0.672,0.318,0.01 0|0:0.019:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.876,0.119,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.225:0.793,0.189,0.018 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.212:0.807,0.173,0.019 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19918600 SNP-3.19917110. C A . PASS AR2=0.987;DR2=0.991;AF=0.341 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.998:0,0.002,0.998 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.388:0.009,0.594,0.397 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 0|0:0.04:0.961,0.038,0.001 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.831:0,0.169,0.831 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.017:0.983,0.017,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.044:0.172,0.612,0.216 1|1:2:0,0,1 1|1:1.717:0.011,0.261,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.936:0.002,0.059,0.939 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.497:0.513,0.476,0.01 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.049,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.987:0,0.013,0.987 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.718:0.005,0.271,0.724 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.686:0.006,0.302,0.692 0|0:0:1,0,0 +3 19918707 SNP-3.19917217. A G . PASS AR2=0.914;DR2=0.934;AF=0.411 GT:DS:GP 0|0:0.806:0.358,0.478,0.164 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.52:0.057,0.365,0.578 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.67:0.441,0.448,0.111 1|1:1.717:0.021,0.242,0.738 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.594:0.04,0.325,0.635 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.793:0.009,0.188,0.802 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.552:0.05,0.347,0.602 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.561:0.048,0.343,0.609 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.738:0.018,0.225,0.756 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.948:0.001,0.05,0.949 1|0:1.232:0.136,0.496,0.368 1|1:1.484:0.034,0.447,0.519 1|1:1.92:0.002,0.076,0.922 0|0:0.216:0.797,0.189,0.013 0|0:0.395:0.647,0.311,0.042 1|0:0.693:0.431,0.444,0.125 0|0:0.697:0.427,0.449,0.124 0|0:0:1,0,0 0|0:0.569:0.51,0.411,0.079 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.142:0.862,0.133,0.005 0|0:0:1,0,0 0|1:0.83:0.352,0.466,0.182 1|1:2:0,0,1 0|1:1:0,1,0 0|1:1.201:0.163,0.474,0.363 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.659:0.029,0.283,0.688 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.464:0.589,0.358,0.053 0|0:0:1,0,0 1|0:0.675:0.442,0.441,0.117 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.861:0.331,0.477,0.192 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.262:0.743,0.253,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.989:0,0.011,0.989 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.749:0.017,0.217,0.766 0|1:1:0,1,0 1|0:0.808:0.343,0.506,0.151 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.834:0.01,0.146,0.844 1|1:1.564:0.047,0.341,0.612 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.552:0.052,0.344,0.604 1|1:2:0,0,1 1|1:1.554:0.05,0.346,0.604 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:0.831:0.345,0.479,0.176 1|1:1.128:0.184,0.504,0.312 1|0:0.764:0.379,0.479,0.143 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.711:0.419,0.451,0.13 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.425:0.62,0.336,0.045 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.683:0.437,0.444,0.119 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.227:0.154,0.466,0.38 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 1|1:2:0,0,1 0|1:1.439:0.138,0.285,0.577 0|0:0:1,0,0 1|0:1:0,1,0 +3 19919419 SNP-3.19917929. C A . PASS AR2=0.974;DR2=0.98;AF=0.278 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.736:0.018,0.228,0.754 0|0:0:1,0,0 1|1:1.705:0.022,0.251,0.727 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.711:0.02,0.249,0.731 0|1:1.112:0.174,0.54,0.286 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.552:0.044,0.359,0.597 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.717:0.021,0.241,0.738 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.773:0.014,0.198,0.788 1|1:1.704:0.022,0.252,0.726 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.737:0.017,0.228,0.754 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.022,0.251,0.728 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1.293:0.063,0.581,0.356 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.706:0.022,0.25,0.728 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.694:0.024,0.258,0.718 1|1:1.712:0.033,0.222,0.745 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19920044 SNP-3.19918554. C A . PASS AR2=0.97;DR2=0.979;AF=0.31 GT:DS:GP 0|0:0:1,0,0 1|1:1.9:0.004,0.092,0.904 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.503:0.564,0.368,0.068 0|0:0:1,0,0 1|1:1.708:0.023,0.245,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.406:0.008,0.579,0.413 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.975:0,0.025,0.975 1|1:2:0,0,1 1|1:1.65:0.04,0.271,0.689 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.599:0.059,0.283,0.658 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.049,0.322,0.629 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.905:0.002,0.091,0.907 0|0:0:1,0,0 1|1:1.981:0,0.019,0.981 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 1|1:1.967:0,0.032,0.967 0|0:0:1,0,0 1|1:1.864:0.001,0.134,0.865 1|1:2:0,0,1 1|1:1.802:0.011,0.176,0.813 0|0:0:1,0,0 1|0:0.704:0.296,0.704,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.819:0.007,0.167,0.826 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.06,0.939 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.67:0.005,0.319,0.675 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.413:0.076,0.434,0.489 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.929:0,0.07,0.93 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.783:0.008,0.202,0.791 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.544:0.053,0.349,0.597 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.855:0.002,0.14,0.857 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.691:0.01,0.29,0.7 0|0:0:1,0,0 +3 19921742 SNP-3.19920252. C A . PASS AR2=0.993;DR2=0.994;AF=0.396 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.166:0.841,0.152,0.007 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.307:0.707,0.279,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.056:0.945,0.055,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.169:0.838,0.156,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0.315:0.718,0.25,0.033 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.057:0.944,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.136:0.869,0.127,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.904,0.093,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.126:0.879,0.117,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.1:0.903,0.095,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19922833 SNP-3.19921343. C A . PASS AR2=0.979;DR2=0.982;AF=0.398 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.231:0.782,0.205,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.107:0.896,0.102,0.002 1|0:1:0,1,0 0|0:0.083:0.917,0.082,0 0|0:0.132:0.872,0.123,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.895,0.101,0.004 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.215:0.801,0.183,0.016 0|0:0.123:0.881,0.115,0.004 0|0:0.135:0.87,0.125,0.005 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0.094:0.908,0.089,0.002 0|0:0.479:0.594,0.333,0.073 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.126:0.878,0.118,0.004 0|0:0:1,0,0 0|0:0.111:0.892,0.105,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.109:0.894,0.104,0.003 0|0:0:1,0,0 0|0:0.142:0.864,0.131,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.984:0,0.015,0.985 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.14:0.865,0.13,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.162:0.845,0.148,0.007 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.138:0.868,0.126,0.006 1|0:1:0,1,0 0|0:0.233:0.783,0.201,0.016 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.249:0.771,0.21,0.019 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.205:0.806,0.183,0.011 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.13:0.874,0.121,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.123:0.881,0.115,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.142:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.131:0.873,0.124,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.185:0.821,0.173,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.146:0.86,0.134,0.006 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.929,0.068,0.003 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19922943 SNP-3.19921453. A G . PASS AR2=1;DR2=1;AF=0.255 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.982:0,0.018,0.982 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19924759 SNP-3.19923269. A G . PASS AR2=0.879;DR2=0.907;AF=0.298 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.377:0.091,0.441,0.468 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.697:0.023,0.257,0.72 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.507:0.047,0.399,0.554 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.724:0.022,0.231,0.747 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.046:0.191,0.572,0.237 0|1:1.363:0.098,0.44,0.462 0|1:0.767:0.361,0.512,0.127 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.388:0.643,0.326,0.031 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.435:0.082,0.401,0.517 1|1:2:0,0,1 1|1:1.255:0.137,0.47,0.392 0|0:0.764:0.382,0.472,0.146 0|1:0.892:0.303,0.503,0.194 1|1:2:0,0,1 1|0:1.249:0.14,0.47,0.389 0|1:0.697:0.418,0.467,0.115 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.974:0.262,0.502,0.236 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.36:0.107,0.426,0.467 0|0:0:1,0,0 1|0:0.787:0.356,0.5,0.143 0|0:0.462:0.651,0.237,0.113 1|0:1.371:0.05,0.529,0.421 0|0:0:1,0,0 0|1:1.216:0.14,0.505,0.356 0|0:0.694:0.431,0.445,0.124 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1.245:0.149,0.456,0.395 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.735:0.006,0.253,0.741 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.012:0.988,0.012,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.993:0,0.007,0.993 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.287:0.138,0.438,0.424 1|1:2:0,0,1 0|0:0:1,0,0 1|0:0.998:0.255,0.491,0.254 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.942:0.002,0.055,0.943 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.536:0.045,0.373,0.582 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.629:0.033,0.306,0.661 0|0:0.076:0.924,0.076,0 1|1:2:0,0,1 1|0:0.625:0.467,0.441,0.092 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.011:0.082,0.824,0.093 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.046:0.954,0.045,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.411:0.088,0.414,0.499 0|0:0:1,0,0 0|0:0.914:0.289,0.508,0.203 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.253:0.144,0.459,0.397 0|0:0:1,0,0 1|0:0.885:0.311,0.493,0.196 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.721:0.44,0.398,0.161 1|1:1.669:0.03,0.271,0.699 0|1:0.896:0.299,0.507,0.194 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.408:0.091,0.41,0.499 1|1:1.362:0.106,0.426,0.468 1|1:1.639:0.035,0.29,0.674 1|1:1.43:0.073,0.424,0.503 1|1:2:0,0,1 1|0:1.068:0.055,0.822,0.123 0|0:0.932:0.289,0.489,0.222 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.932:0.289,0.489,0.222 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.446:0.078,0.397,0.525 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19924786 SNP-3.19923296. C A . PASS AR2=0.998;DR2=0.999;AF=0.466 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.001:0.004,0.99,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.007:0,0.993,0.007 1|0:1.387:0,0.613,0.387 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19929387 SNP-3.19927897. C A . PASS AR2=0.985;DR2=0.988;AF=0.343 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.145:0.856,0.143,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.958:0.001,0.041,0.959 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.078:0.926,0.071,0.004 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.164:0.839,0.158,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.03:0.97,0.03,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.833:0.004,0.16,0.837 1|1:2:0,0,1 0|0:0.022:0.978,0.022,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0.011,0.143,0.845 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.976:0,0.023,0.976 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.607:0.399,0.594,0.006 1|1:1.949:0.001,0.05,0.95 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.792:0.006,0.197,0.798 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.265:0.101,0.533,0.366 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.843:0.004,0.149,0.847 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.038:0.962,0.037,0 0|0:0.002:0.998,0.002,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.205:0.079,0.638,0.283 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.796:0.011,0.181,0.807 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.886:0.003,0.108,0.889 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.922:0.002,0.074,0.924 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.034:0.967,0.032,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.975:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.955:0.001,0.044,0.956 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:1.956:0.001,0.042,0.957 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19929707 SNP-3.19928217. C A . PASS AR2=0.998;DR2=0.998;AF=0.353 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.966 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.997:0.003,0.997,0 1|0:1.357:0.032,0.579,0.389 0|0:0.042:0.96,0.038,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.991:0,0.009,0.991 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19930698 SNP-3.19929208. A G . PASS AR2=0.988;DR2=0.99;AF=0.205 GT:DS:GP 0|0:0.05:0.951,0.048,0.001 1|0:1:0,1,0 1|1:1.701:0.036,0.228,0.737 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.065:0.937,0.06,0.002 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.118:0.886,0.11,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.038,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0.212:0.788,0.212,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.242:0.769,0.221,0.01 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.782:0.022,0.175,0.803 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.201:0.811,0.178,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.022:0.978,0.021,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.048:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.958,0.04,0.002 0|0:0:1,0,0 0|0:0:1,0,0 +3 19931769 SNP-3.19930279. C A . PASS AR2=0.997;DR2=0.997;AF=0.336 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.048:0.041,0.87,0.089 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.994:0,0.006,0.994 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.928:0.001,0.07,0.929 1|0:1:0,1,0 1|0:1:0,1,0 1|0:0.999:0.078,0.845,0.077 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.067,0.932 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.016:0.984,0.016,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.023:0.977,0.023,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0.02:0.981,0.019,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.935:0.003,0.059,0.938 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19932125 SNP-3.19930635. C A . PASS AR2=0.993;DR2=0.995;AF=0.372 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.018:0.982,0.018,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.021:0.98,0.02,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.026:0,0.974,0.026 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.038:0.962,0.037,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.348:0.688,0.276,0.036 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.926:0,0.074,0.926 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.343:0.692,0.273,0.035 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0.016:0.984,0.016,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.363:0.673,0.29,0.037 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19932245 SNP-3.19930755. A G . PASS AR2=0.902;DR2=0.926;AF=0.325 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.698:0.024,0.254,0.722 0|1:0.594:0.49,0.425,0.085 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.156:0.163,0.518,0.319 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.669:0.027,0.277,0.696 1|0:1.513:0.05,0.387,0.563 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.352:0.071,0.506,0.423 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.807:0.01,0.173,0.817 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.799,0.197,0.004 0|0:0.501:0.573,0.354,0.074 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.958:0.251,0.54,0.209 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.815:0.011,0.162,0.826 0|0:0:1,0,0 0|0:0.769:0.348,0.534,0.117 0|1:1:0,1,0 1|1:1.828:0.008,0.156,0.836 1|1:2:0,0,1 0|0:0.797:0.378,0.447,0.175 0|0:0:1,0,0 0|0:0.45:0.622,0.305,0.073 0|1:0.363:0.637,0.363,0 1|1:2:0,0,1 0|1:0.986:0.208,0.597,0.195 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 1|1:1.51:0.064,0.362,0.574 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.036:0.964,0.036,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.069:0.933,0.065,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.075:0.927,0.071,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.929:0.279,0.513,0.208 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.694:0.369,0.568,0.063 0|0:0.285:0.742,0.231,0.027 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.771:0.014,0.202,0.785 0|0:0:1,0,0 1|0:1.072:0.186,0.556,0.258 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.081:0.924,0.071,0.005 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.781:0.014,0.19,0.795 1|1:1.758:0.014,0.213,0.773 1|1:1.783:0.013,0.19,0.797 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.47:0.043,0.444,0.513 0|0:0:1,0,0 0|0:0.608:0.465,0.461,0.074 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.308:0.724,0.244,0.032 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1.438:0.079,0.403,0.518 0|0:0.598:0.486,0.43,0.084 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.926,0.072,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.893:0.308,0.492,0.201 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.814:0.01,0.166,0.824 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.315:0.123,0.44,0.438 0|0:0.574:0.524,0.378,0.098 0|0:0.486:0.585,0.343,0.072 0|0:0.395:0.646,0.313,0.041 1|1:2:0,0,1 0|0:0.306:0.719,0.255,0.025 0|1:1.315:0.123,0.44,0.438 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.306:0.719,0.255,0.025 0|0:0.28:0.741,0.238,0.021 1|1:2:0,0,1 1|1:1.764:0.008,0.219,0.773 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.046:0.954,0.045,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.414:0.635,0.317,0.049 0|0:0:1,0,0 1|1:2:0,0,1 +3 19935876 SNP-3.19934386. C A . PASS AR2=0.993;DR2=0.995;AF=0.364 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.99:0,0.01,0.99 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.04:0.961,0.038,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.982:0.027,0.965,0.008 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.546:0.031,0.392,0.577 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.85:0.003,0.143,0.854 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.511:0.054,0.381,0.565 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.021:0.979,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.092:0.912,0.084,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.062,0.937 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19936724 SNP-3.19935234. C A . PASS AR2=0.987;DR2=0.99;AF=0.379 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:1.994:0,0.006,0.994 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.086:0.916,0.082,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.121:0.882,0.114,0.004 0|1:1:0,1,0 0|0:0:1,0,0 1|0:0.992:0.008,0.992,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.078:0.924,0.074,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.097:0.905,0.093,0.002 0|0:0:1,0,0 0|0:0.124:0.878,0.119,0.002 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.061:0.94,0.059,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.042:0.958,0.042,0 0|0:0.009:0.991,0.008,0 0|1:1:0,1,0 0|0:0.122:0.882,0.115,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.634:0.014,0.337,0.649 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.785:0.012,0.191,0.797 1|1:1.923:0.001,0.075,0.924 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.613:0.405,0.578,0.018 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.001,0.081,0.918 1|1:1.992:0,0.008,0.992 1|1:1.998:0,0.002,0.998 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.035:0.965,0.035,0 0|0:0:1,0,0 0|0:0.007:0.993,0.007,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.088:0.916,0.08,0.004 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.76:0,0.24,0.76 0|0:0:1,0,0 0|0:0.097:0.905,0.092,0.002 0|0:0.081:0.921,0.077,0.002 0|0:0:1,0,0 0|0:0.12:0.883,0.113,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.056:0.945,0.055,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.982:0,0.017,0.983 0|0:0:1,0,0 +3 19939524 SNP-3.19938034. A G . PASS AR2=0.957;DR2=0.966;AF=0.471 GT:DS:GP 1|1:1.62:0.036,0.307,0.657 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.998:0,0.002,0.998 1|1:1.581:0.026,0.367,0.607 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.746:0.015,0.224,0.761 1|1:1.684:0.025,0.266,0.709 1|1:1.773:0.012,0.204,0.785 1|1:1.773:0.013,0.201,0.786 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.83:0.007,0.156,0.837 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.52:0.04,0.4,0.56 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.664:0.027,0.281,0.692 1|1:2:0,0,1 1|1:1.641:0.038,0.284,0.679 0|1:1:0,1,0 1|1:1.837:0.009,0.145,0.846 1|1:1.799:0.007,0.188,0.806 1|1:1.992:0,0.008,0.992 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.75:0.018,0.213,0.769 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 1|1:1.61:0.037,0.316,0.647 1|1:1.728:0.018,0.237,0.746 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.832:0.007,0.155,0.838 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.787:0.015,0.183,0.802 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.679:0.013,0.294,0.693 1|1:1.853:0.006,0.135,0.859 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.025:0.975,0.025,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.816,0.184,0 0|0:0.523:0.478,0.522,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.782:0.013,0.192,0.795 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.843:0.009,0.139,0.852 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.779:0.014,0.192,0.794 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.831:0.009,0.151,0.84 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.552:0.049,0.35,0.601 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:1.653:0.029,0.289,0.682 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.716:0.021,0.242,0.737 1|1:1.687:0.023,0.267,0.71 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.877:0.003,0.116,0.88 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.838:0.009,0.144,0.847 1|1:1.756:0.015,0.214,0.771 1|1:1.815:0.01,0.165,0.825 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.92:0.002,0.076,0.922 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.837:0.009,0.145,0.846 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.079,0.919 1|1:1.903:0.002,0.093,0.905 1|1:2:0,0,1 1|1:1.902:0.003,0.093,0.905 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19941914 SNP-3.19940424. C A . PASS AR2=0.99;DR2=0.992;AF=0.381 GT:DS:GP 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.107:0.895,0.103,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.189:0.82,0.172,0.009 0|0:0.05:0.951,0.048,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.138:0.868,0.127,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.11:0.893,0.104,0.003 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.95,0.05,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.119:0.881,0.119,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.966,0.034,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.834:0,0.166,0.834 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.999:0,0.001,0.999 1|1:2:0,0,1 0|0:0.066:0.934,0.066,0 1|1:2:0,0,1 1|0:0.542:0.479,0.5,0.021 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.14:0.001,0.858,0.141 1|0:1.116:0.035,0.813,0.151 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.996:0,0.004,0.996 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0.089:0.912,0.086,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.118:0.886,0.109,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19942216 SNP-3.19940726. A G . PASS AR2=0.997;DR2=0.998;AF=0.254 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.829:0.171,0.829,0 0|1:0.657:0.345,0.652,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19944547 SNP-3.19943057. C A . PASS AR2=1;DR2=1;AF=0.463 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19944661 SNP-3.19943171. A G . PASS AR2=0.983;DR2=0.986;AF=0.21 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.845:0.005,0.145,0.85 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.747:0.016,0.22,0.763 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.858:0.004,0.135,0.861 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.176:0.831,0.161,0.007 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0.1:0.9,0.1,0 0|0:0.298:0.702,0.298,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.315:0.685,0.315,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.213:0.799,0.19,0.011 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.232:0.782,0.205,0.014 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.189:0.821,0.17,0.009 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.839:0.007,0.147,0.846 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.23:0.783,0.203,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19948191 SNP-3.19946701. C A . PASS AR2=0.983;DR2=0.987;AF=0.368 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.063:0.938,0.061,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.962:0.001,0.036,0.963 0|0:0:1,0,0 0|0:0.115:0.887,0.111,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.043:0.958,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.044:0.956,0.044,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.057:0.945,0.054,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.873,0.126,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.071:0.929,0.071,0 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.083:0.919,0.079,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.948:0.052,0.948,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.901:0.001,0.096,0.902 1|0:1.033:0.031,0.905,0.064 0|0:0:1,0,0 1|1:1.809:0.004,0.183,0.813 1|1:1.625:0.015,0.346,0.639 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.97:0,0.03,0.97 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.894:0.003,0.101,0.896 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.488:0.574,0.365,0.061 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0.136:0.866,0.132,0.002 0|0:0:1,0,0 0|0:0.077:0.925,0.073,0.002 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.074:0.928,0.071,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.937:0.001,0.061,0.938 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.916,0.082,0.002 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.476:0.582,0.359,0.059 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.043,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.039:0.962,0.038,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.068:0.933,0.065,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.049:0.952,0.047,0.001 0|0:0:1,0,0 0|0:0.039:0.961,0.038,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19948632 SNP-3.19947142. A G . PASS AR2=0.981;DR2=0.985;AF=0.219 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.055:0.946,0.052,0.001 0|0:0:1,0,0 1|1:1.868:0.004,0.124,0.872 1|1:1.627:0.026,0.321,0.653 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.118:0.885,0.111,0.003 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.809:0.011,0.17,0.82 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.759:0.013,0.215,0.772 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.158:0.848,0.145,0.006 0|0:0:1,0,0 0|0:0.019:0.981,0.019,0 0|0:0:1,0,0 0|0:0.12:0.884,0.112,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.12:0.884,0.112,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.031:0.97,0.03,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.028:0.972,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.089:0.913,0.086,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.388:0.613,0.386,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.95:0.001,0.048,0.951 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.859:0.004,0.132,0.864 0|1:1:0,1,0 1|1:1.922:0.002,0.074,0.924 1|1:2:0,0,1 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.01:0.99,0.01,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.047:0.953,0.046,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.003,0.111,0.886 1|1:1.848:0.006,0.14,0.854 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:1.889:0.003,0.105,0.892 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.037:0.964,0.035,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.05:0.952,0.047,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.07:0.933,0.065,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19948939 SNP-3.19947449. C A . PASS AR2=0.996;DR2=0.997;AF=0.425 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.51:0.49,0.51,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1.158:0.194,0.453,0.353 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19949392 SNP-3.19947902. A G . PASS AR2=0.936;DR2=0.962;AF=0.247 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.059:0.942,0.057,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.032:0.968,0.032,0 0|0:0.069:0.934,0.063,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.092:0.909,0.09,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.618:0.488,0.406,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.594:0.495,0.416,0.089 1|1:2:0,0,1 0|1:0.655:0.451,0.443,0.106 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.607:0.491,0.411,0.098 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.593:0.584,0.239,0.177 0|1:1:0,1,0 0|0:0.601:0.496,0.407,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.592:0.504,0.399,0.096 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.646:0.457,0.44,0.103 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.617:0.398,0.586,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.653:0.453,0.442,0.105 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.061:0.939,0.06,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.554:0.538,0.37,0.092 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.616:0.483,0.418,0.099 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.041:0.959,0.04,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.626:0.476,0.422,0.102 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.149:0.857,0.137,0.006 0|0:0:1,0,0 0|0:0.265:0.759,0.218,0.024 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 +3 19952853 SNP-3.19951363. C A . PASS AR2=0.982;DR2=0.987;AF=0.355 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.957:0.001,0.041,0.958 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.031,0.968 1|1:1.958:0,0.042,0.958 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:1.896:0,0.103,0.896 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.305:0.718,0.26,0.022 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 1|0:1:0,1,0 1|0:1.183:0.013,0.791,0.196 0|0:0.45:0.596,0.358,0.046 0|0:0.306:0.718,0.257,0.024 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.307:0.718,0.258,0.024 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.31:0.715,0.261,0.025 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.306:0.718,0.257,0.024 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.307:0.718,0.258,0.024 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.984:0,0.016,0.984 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.306:0.719,0.257,0.024 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.043,0.956 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.948:0,0.051,0.948 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.328:0.698,0.275,0.026 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.961:0,0.038,0.962 0|0:0:1,0,0 +3 19953252 SNP-3.19951762. C A . PASS AR2=0.991;DR2=0.992;AF=0.373 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.958:0,0.042,0.958 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.99:0,0.01,0.99 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.002,0.049,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.387:0.014,0.585,0.401 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.812:0.361,0.466,0.173 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.811:0.362,0.466,0.173 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.822:0.354,0.471,0.175 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19956745 SNP-3.19955255. C A . PASS AR2=0.97;DR2=0.977;AF=0.449 GT:DS:GP 0|0:0:1,0,0 1|1:1.891:0.003,0.103,0.894 0|0:0.121:0.883,0.113,0.004 1|1:1.932:0.002,0.065,0.934 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.016:0.984,0.016,0 1|0:1.014:0.053,0.88,0.067 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.221:0.79,0.199,0.011 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.358:0.685,0.273,0.042 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.043:0.957,0.042,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.034:0.966,0.033,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.024:0.976,0.023,0 0|0:0:1,0,0 0|0:0.015:0.985,0.015,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.181:0.822,0.175,0.003 0|0:0.041:0.96,0.04,0.001 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.956:0,0.044,0.956 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.916:0.002,0.08,0.918 1|0:1.339:0.108,0.444,0.448 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.207:0.793,0.206,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.131:0.182,0.504,0.314 1|1:1.401:0.092,0.414,0.493 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.73:0.005,0.259,0.735 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.307:0.121,0.45,0.429 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.204:0.808,0.181,0.011 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.009:0.056,0.879,0.065 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.122:0.882,0.114,0.004 0|0:0:1,0,0 1|1:1.302:0.124,0.451,0.426 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.889,0.108,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.3:0.124,0.451,0.425 1|0:1:0,1,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 0|0:0.024:0.976,0.024,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.878:0.004,0.114,0.882 0|0:0:1,0,0 1|1:1.903:0.003,0.092,0.906 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.09:0.912,0.085,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.997:0,0.003,0.997 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19957190 SNP-3.19955700. A G . PASS AR2=0.973;DR2=0.977;AF=0.5 GT:DS:GP 1|1:1.93:0.001,0.067,0.932 0|0:0:1,0,0 1|1:1.921:0.002,0.076,0.923 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.68:0.017,0.285,0.697 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.832:0.007,0.155,0.839 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.689:0.018,0.275,0.707 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.911:0.002,0.085,0.913 0|0:0:1,0,0 1|1:1.781:0.013,0.193,0.794 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.827:0.007,0.158,0.835 1|1:2:0,0,1 1|1:1.76:0.015,0.209,0.775 1|1:2:0,0,1 1|1:1.621:0.044,0.29,0.666 1|1:1.85:0.005,0.141,0.855 1|1:2:0,0,1 1|1:1.655:0.021,0.302,0.677 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.897:0.003,0.097,0.9 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.926:0.002,0.071,0.928 1|1:1.916:0.002,0.08,0.918 1|1:1.926:0.002,0.071,0.927 1|1:2:0,0,1 1|1:1.922:0.002,0.075,0.923 1|1:2:0,0,1 1|1:1.903:0.002,0.093,0.905 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.904:0.002,0.091,0.906 1|1:1.906:0.002,0.09,0.908 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.911:0.002,0.085,0.913 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.861:0.005,0.129,0.866 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.933:0.001,0.065,0.934 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.875:0.004,0.117,0.879 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.58:0.022,0.377,0.601 0|1:0.961:0.039,0.961,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.852:0.004,0.14,0.856 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.931:0.001,0.067,0.932 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.011:0.989,0.011,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.917:0.002,0.08,0.919 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.601:0.051,0.298,0.651 1|1:1.899:0.003,0.096,0.901 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.877:0.004,0.114,0.881 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.873:0.002,0.124,0.875 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.927:0.002,0.07,0.928 1|1:1.648:0.02,0.313,0.667 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.938:0.001,0.06,0.939 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.887:0.003,0.107,0.89 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.939:0.001,0.059,0.94 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.937:0.001,0.061,0.938 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.935:0,0.065,0.935 0|0:0:1,0,0 1|1:1.909:0.003,0.086,0.911 1|1:1.893:0.004,0.1,0.896 0|0:0:1,0,0 1|1:2:0,0,1 +3 19957532 SNP-3.19956042. A G . PASS AR2=0.95;DR2=0.96;AF=0.454 GT:DS:GP 1|1:1.752:0.016,0.217,0.768 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.847:0.006,0.14,0.853 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.63:0.033,0.304,0.663 0|0:0.762:0.332,0.574,0.094 0|1:1:0,1,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.513:0.06,0.367,0.573 1|1:1.381:0.063,0.493,0.444 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1.456:0.038,0.468,0.494 1|1:2:0,0,1 1|1:1.64:0.03,0.3,0.67 1|1:1.532:0.056,0.355,0.588 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.083:0.233,0.45,0.316 1|1:1.66:0.022,0.297,0.681 1|1:2:0,0,1 0|1:1.055:0.139,0.667,0.194 0|1:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.749:0.016,0.219,0.765 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.752:0.016,0.216,0.768 1|0:1:0,1,0 1|1:1.76:0.014,0.211,0.774 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.761:0.014,0.21,0.775 1|1:1.761:0.014,0.21,0.775 1|1:1.768:0.014,0.204,0.782 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:1.712:0.02,0.249,0.731 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.777:0.013,0.197,0.79 1|1:1.768:0.014,0.205,0.782 1|1:2:0,0,1 1|1:1.783:0.013,0.192,0.795 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|1:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.761:0.014,0.21,0.776 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.762:0.014,0.209,0.776 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.853:0.005,0.136,0.858 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.84:0.006,0.147,0.846 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.802:0.004,0.19,0.806 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.731:0.019,0.232,0.749 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.757:0.015,0.214,0.771 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.848:0.006,0.139,0.854 1|1:1.94:0.001,0.058,0.941 1|1:1.677:0.029,0.266,0.705 1|1:1.772:0.013,0.201,0.785 1|1:1.939:0.001,0.059,0.94 1|1:1.769:0.014,0.204,0.783 1|1:2:0,0,1 1|1:1.871:0.004,0.12,0.875 1|1:1.979:0,0.02,0.979 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.947:0.002,0.048,0.949 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.732:0.018,0.231,0.751 0|0:0:1,0,0 1|1:1.772:0.013,0.201,0.785 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.875:0.002,0.122,0.876 0|0:0:1,0,0 1|1:1.886:0.005,0.104,0.891 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 +3 19961777 SNP-3.19960287. C A . PASS AR2=0.997;DR2=0.998;AF=0.339 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.026,0.974 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.985:0,0.015,0.985 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.029:0.971,0.029,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.045:0.955,0.045,0 1|0:1.359:0.01,0.622,0.369 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.875:0.004,0.117,0.879 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19962829 SNP-3.19961339. C A . PASS AR2=0.976;DR2=0.981;AF=0.453 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.184:0.825,0.166,0.009 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.098:0.905,0.093,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.252:0.765,0.218,0.017 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0.11:0.894,0.102,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.319:0.719,0.242,0.038 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.334:0.694,0.278,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.231:0.781,0.206,0.013 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.3:0.723,0.255,0.023 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.863,0.132,0.005 0|0:0:1,0,0 0|0:0.342:0.683,0.292,0.025 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.333:0.692,0.283,0.025 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.923:0.003,0.071,0.926 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.982:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:1.977:0,0.023,0.977 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.108:0.894,0.103,0.003 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.19:0.819,0.173,0.008 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.329:0.698,0.275,0.027 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.088:0.914,0.084,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0.317:0.703,0.277,0.02 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.784:0.368,0.48,0.152 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.21:0.802,0.186,0.012 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.087:0.916,0.082,0.002 0|0:0:1,0,0 0|0:0.084:0.918,0.08,0.002 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.867,0.128,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.076:0.927,0.071,0.002 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19969198 SNP-3.19967708. A G . PASS AR2=0.833;DR2=0.862;AF=0.292 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.04:0.219,0.522,0.259 0|0:0:1,0,0 0|0:0.812:0.355,0.479,0.167 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.793:0.357,0.494,0.15 0|0:0:1,0,0 1|1:1.344:0.101,0.453,0.445 0|1:0.541:0.487,0.485,0.028 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.177:0.144,0.535,0.321 0|0:0:1,0,0 0|1:0.951:0.284,0.481,0.235 0|1:0.707:0.388,0.516,0.095 0|1:1:0,1,0 0|0:0.74:0.395,0.47,0.135 0|0:0:1,0,0 0|0:0.765:0.372,0.491,0.137 1|0:0.836:0.316,0.532,0.152 0|1:0.624:0.425,0.526,0.049 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.776:0.376,0.472,0.152 0|0:0.473:0.544,0.439,0.017 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.825:0.347,0.481,0.172 0|0:0.155:0.846,0.154,0.001 1|0:0.867:0.324,0.485,0.191 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.784:0.014,0.189,0.797 0|0:0:1,0,0 0|1:1.076:0.183,0.557,0.26 0|1:1:0,1,0 0|1:0.902:0.302,0.495,0.203 0|0:0:1,0,0 1|0:1:0,1,0 1|1:1.463:0.068,0.4,0.531 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.132:0.188,0.491,0.32 0|0:0:1,0,0 1|1:1.023:0.253,0.472,0.276 1|1:2:0,0,1 0|1:1.013:0.084,0.818,0.098 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.442:0.053,0.452,0.495 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.618:0.462,0.458,0.08 0|0:0:1,0,0 1|1:1.314:0.067,0.552,0.381 1|1:2:0,0,1 0|1:0.679:0.424,0.474,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.741:0.366,0.528,0.106 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.478:0.081,0.36,0.559 0|0:0.774:0.376,0.473,0.151 0|1:0.527:0.491,0.491,0.018 1|0:1.133:0.189,0.488,0.322 0|0:0:1,0,0 1|1:1.224:0.129,0.518,0.353 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.105:0.187,0.522,0.292 0|0:0:1,0,0 0|1:0.939:0.281,0.498,0.221 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.462:0.082,0.375,0.544 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.846:0.316,0.522,0.162 1|1:2:0,0,1 0|0:0.699:0.437,0.428,0.135 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.764:0.381,0.474,0.145 0|0:0:1,0,0 0|1:1.225:0.068,0.639,0.293 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0.525:0.488,0.499,0.013 0|1:0.768:0.38,0.471,0.149 0|0:0:1,0,0 0|1:1.05:0.221,0.509,0.27 0|1:1.113:0.201,0.485,0.314 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.736:0.015,0.234,0.751 0|1:0.935:0.234,0.597,0.169 0|1:1.138:0.189,0.484,0.327 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.814:0.353,0.479,0.168 1|1:2:0,0,1 1|1:1.22:0.164,0.452,0.384 0|1:1.418:0.086,0.41,0.504 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.572:0.492,0.444,0.064 1|1:2:0,0,1 0|1:1.129:0.19,0.49,0.319 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.744:0.022,0.213,0.766 1|1:1.808:0.014,0.164,0.822 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.693:0.017,0.272,0.711 1|1:2:0,0,1 1|1:1.853:0.006,0.135,0.859 0|1:0.875:0.324,0.477,0.199 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.663:0.025,0.288,0.687 0|0:0:1,0,0 1|1:2:0,0,1 0|0:1.131:0.221,0.427,0.352 0|0:0:1,0,0 1|1:2:0,0,1 +3 19969228 SNP-3.19967738. C A . PASS AR2=0.998;DR2=0.998;AF=0.375 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1.001:0,0.999,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.99:0.255,0.5,0.245 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19969947 SNP-3.19968457. C A . PASS AR2=0.997;DR2=0.998;AF=0.365 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.065:0.936,0.063,0.001 0|1:0.61:0.405,0.581,0.014 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.004:0.996,0.004,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.002:0.998,0.002,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.993:0,0.007,0.993 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:1.94:0.001,0.059,0.941 1|1:1.988:0,0.012,0.988 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19970174 SNP-3.19968684. C A . PASS AR2=1;DR2=1;AF=0.399 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19970612 SNP-3.19969122. A G . PASS AR2=0.999;DR2=0.999;AF=0.247 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.921:0.001,0.077,0.922 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.979:0,0.021,0.979 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.965:0.001,0.034,0.965 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.943:0.001,0.055,0.944 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.973:0,0.027,0.973 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19971695 SNP-3.19970205. C A . PASS AR2=0.995;DR2=0.996;AF=0.344 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.06:0.942,0.056,0.002 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:0.696:0.313,0.678,0.009 1|0:0.656:0.351,0.641,0.008 0|0:0.044:0.957,0.042,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.063:0.938,0.061,0.001 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.058:0.942,0.057,0.001 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.044:0.957,0.042,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.017:0.983,0.016,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.078:0.923,0.076,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.06:0.942,0.056,0.002 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19973386 SNP-3.19971896. C A . PASS AR2=0.974;DR2=0.977;AF=0.445 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.974:0,0.026,0.974 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.237:0,0.763,0.237 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:2:0,0,1 0|1:1.145:0.185,0.486,0.33 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.551:0.009,0.432,0.559 1|0:1.564:0.004,0.429,0.567 1|0:1.134:0.189,0.488,0.323 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.143:0.185,0.487,0.328 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:1.001:0.256,0.488,0.257 1|1:2:0,0,1 1|0:1.14:0.186,0.489,0.326 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.152:0.181,0.486,0.333 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.134:0.189,0.488,0.323 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.126:0.192,0.491,0.318 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.138:0.187,0.489,0.324 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.145:0.185,0.486,0.33 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19974011 SNP-3.19972521. A G . PASS AR2=0.977;DR2=0.987;AF=0.302 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:1.935:0.001,0.063,0.936 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.959:0,0.041,0.959 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.883:0.004,0.11,0.886 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.627:0.474,0.425,0.101 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.315:0.687,0.312,0.002 0|1:0.628:0.472,0.428,0.1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.035:0.965,0.035,0 0|1:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.628:0.472,0.428,0.1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.603:0.493,0.41,0.097 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.627:0.474,0.425,0.101 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19975116 SNP-3.19973626. A G . PASS AR2=0.876;DR2=0.902;AF=0.341 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.26:0.085,0.569,0.345 0|0:0.911:0.292,0.505,0.203 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.379:0.04,0.54,0.42 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.287:0.088,0.537,0.375 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.681:0.021,0.277,0.702 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1.226:0.146,0.482,0.372 0|0:0.663:0.438,0.46,0.102 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.743:0.38,0.497,0.123 1|1:2:0,0,1 1|0:0.977:0.272,0.478,0.25 1|1:2:0,0,1 0|0:0.587:0.506,0.401,0.093 1|1:2:0,0,1 0|1:0.622:0.457,0.465,0.078 0|0:0:1,0,0 1|1:1.279:0.118,0.484,0.398 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.386:0.095,0.423,0.481 1|0:1.279:0.127,0.468,0.406 1|1:1.413:0.084,0.418,0.497 0|1:1.242:0.144,0.471,0.385 0|0:0:1,0,0 1|1:1.512:0.052,0.385,0.564 1|1:1.593:0.035,0.337,0.628 1|1:1.573:0.048,0.331,0.621 0|0:0:1,0,0 1|1:1.34:0.107,0.446,0.447 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.691:0.015,0.278,0.707 1|1:2:0,0,1 1|0:1.389:0.071,0.469,0.46 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|0:0.901:0.268,0.562,0.169 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.729:0.022,0.227,0.751 1|1:1.647:0.037,0.279,0.684 0|0:0:1,0,0 0|1:0.672:0.328,0.672,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:0.864:0.269,0.598,0.133 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.507:0.078,0.336,0.585 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.899:0.158,0.785,0.057 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.95:0.277,0.496,0.227 1|1:1.643:0.028,0.302,0.67 1|1:1.529:0.05,0.372,0.579 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1.23:0.15,0.47,0.38 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.244:0.145,0.466,0.389 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.808:0.343,0.507,0.151 0|0:0:1,0,0 1|0:0.816:0.335,0.514,0.151 0|0:0:1,0,0 1|0:1.248:0.136,0.479,0.384 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:1.444:0.039,0.478,0.483 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.237:0.1,0.564,0.336 0|1:1.391:0.091,0.426,0.483 1|1:2:0,0,1 1|1:1.35:0.109,0.433,0.459 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1.075:0.15,0.626,0.224 1|1:1.437:0.08,0.403,0.517 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.208:0.159,0.475,0.366 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.259:0.142,0.456,0.401 1|1:1.841:0.012,0.135,0.853 1|1:1.883:0.005,0.108,0.888 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.968:0.267,0.497,0.235 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.762:0.019,0.2,0.781 1|1:1.799:0.015,0.171,0.814 1|1:1.717:0.013,0.257,0.73 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.908:0.004,0.084,0.912 1|1:1.716:0.04,0.205,0.755 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.796:0.017,0.17,0.813 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.837:0.016,0.13,0.854 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.051:0.262,0.425,0.313 0|0:0:1,0,0 1|1:2:0,0,1 +3 19976521 SNP-3.19975031. C A . PASS AR2=0.989;DR2=0.992;AF=0.366 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.082:0.92,0.079,0.002 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.981:0,0.018,0.981 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.054:0.947,0.052,0.001 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.02:0.98,0.02,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.186:0.815,0.183,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0.181:0.836,0.148,0.016 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 1|1:2:0,0,1 1|0:1:0,1,0 1|0:1:0,1,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.379:0.658,0.304,0.037 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.026:0.974,0.026,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.393:0.647,0.312,0.04 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.467:0.596,0.341,0.063 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.181:0.836,0.148,0.016 0|0:0:1,0,0 1|1:1.987:0,0.012,0.987 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19983247 SNP-3.19981757. C A . PASS AR2=0.943;DR2=0.954;AF=0.271 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.001:0.999,0.001,0 0|0:0:1,0,0 0|1:1.357:0.028,0.587,0.385 1|1:2:0,0,1 1|0:0.754:0.392,0.462,0.146 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1.262:0.03,0.677,0.293 0|1:0.985:0.24,0.534,0.226 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.122:0.15,0.577,0.273 1|1:2:0,0,1 0|0:1.036:0.215,0.535,0.25 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.986:0,0.014,0.986 1|1:1.984:0,0.016,0.984 1|0:1.365:0.018,0.598,0.384 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.867:0.005,0.124,0.871 1|1:1.56:0.03,0.38,0.59 1|1:2:0,0,1 0|0:0.035:0.966,0.033,0.001 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:0.968:0.246,0.54,0.214 1|1:1.205:0.131,0.534,0.336 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.669:0.418,0.496,0.087 1|0:1.159:0.11,0.621,0.269 0|1:1.371:0.021,0.586,0.392 0|1:0.688:0.413,0.487,0.1 1|1:1.983:0,0.017,0.983 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.626:0.505,0.365,0.13 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1.534:0.044,0.378,0.578 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:0.9:0.305,0.489,0.206 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:0.831:0.343,0.483,0.174 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.93:0.001,0.068,0.931 1|1:1.962:0,0.037,0.963 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:0.669:0.417,0.496,0.087 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1.349:0.006,0.64,0.355 1|0:0.842:0.337,0.484,0.179 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1.213:0.068,0.652,0.28 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.979:0,0.021,0.979 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.98:0,0.02,0.98 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19989349 SNP-3.19987859. C A . PASS AR2=0.975;DR2=0.979;AF=0.352 GT:DS:GP 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.861,0.133,0.005 1|1:2:0,0,1 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.005 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|0:1:0,1,0 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.144:0.861,0.133,0.005 1|1:2:0,0,1 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.897:0.001,0.102,0.898 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.577:0.017,0.389,0.594 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.747:0.27,0.714,0.016 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.005 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 0|0:0.144:0.861,0.133,0.005 1|1:1.784:0.012,0.192,0.796 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.761:0.015,0.209,0.776 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.785:0.012,0.191,0.797 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.144:0.861,0.133,0.005 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.005 1|0:1:0,1,0 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.144:0.861,0.133,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 +3 19989539 SNP-3.19988049. C A . PASS AR2=0.965;DR2=0.972;AF=0.375 GT:DS:GP 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.045:0.955,0.044,0.001 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0.045:0.955,0.044,0.001 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.68:0.03,0.259,0.71 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0.112:0.891,0.105,0.004 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.127:0.877,0.12,0.004 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.129:0.875,0.121,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.128:0.876,0.12,0.004 0|0:0.131:0.874,0.122,0.004 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.752:0.005,0.237,0.757 1|1:2:0,0,1 0|0:0.116:0.888,0.109,0.004 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.96:0,0.039,0.96 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.969:0,0.031,0.969 1|0:1.343:0.009,0.638,0.353 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.916:0.002,0.08,0.918 0|0:0.132:0.875,0.118,0.007 1|1:2:0,0,1 0|0:0.157:0.849,0.145,0.006 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:0.625:0.4,0.576,0.024 1|0:0.604:0.419,0.558,0.023 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.228:0.787,0.198,0.015 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:0.432:0.584,0.4,0.016 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.212:0.801,0.186,0.013 0|0:0.104:0.899,0.098,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.234:0.781,0.204,0.015 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.044:0.956,0.043,0.001 0|0:0:1,0,0 1|1:1.835:0.006,0.152,0.842 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.915:0.002,0.081,0.917 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 1|1:2:0,0,1 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.247:0.769,0.215,0.016 1|1:2:0,0,1 0|0:0.125:0.878,0.118,0.004 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.139:0.866,0.129,0.005 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.262:0.759,0.22,0.021 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.91:0.002,0.086,0.912 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0.419:0.604,0.373,0.023 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0.111:0.893,0.104,0.003 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.141:0.864,0.131,0.005 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.045:0.955,0.044,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.132:0.875,0.119,0.007 0|0:0:1,0,0 1|1:1.997:0,0.003,0.997 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0.05:0.951,0.048,0.001 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 +3 19991345 SNP-3.19989855. A G . PASS AR2=0.993;DR2=0.994;AF=0.306 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0.156:0.85,0.144,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.85,0.144,0.006 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.156:0.85,0.144,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.156:0.85,0.144,0.006 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0.156:0.85,0.144,0.006 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.098:0.903,0.097,0.001 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.037:0.963,0.036,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.027:0.973,0.027,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.005:0.995,0.005,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.115:0.885,0.115,0 0|0:0.052:0.948,0.052,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.003:0.997,0.003,0 0|0:0.003:0.997,0.003,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.953:0.001,0.046,0.953 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.968:0,0.032,0.968 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0.035:0.966,0.034,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|1:1:0,1,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0.156:0.85,0.144,0.006 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.014:0.986,0.014,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 +3 19991997 SNP-3.19990507. A G . PASS AR2=0.996;DR2=0.996;AF=0.241 GT:DS:GP 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.976:0,0.023,0.977 1|1:1.976:0,0.024,0.976 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|0:1:0,1,0 1|1:1.97:0,0.029,0.97 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.968:0,0.032,0.968 0|0:0:1,0,0 0|1:1:0,1,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.959:0.001,0.04,0.96 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0.006:0.994,0.006,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.256:0.006,0.731,0.262 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:1.956:0.001,0.043,0.957 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:1.758:0.005,0.232,0.763 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:1.966:0,0.034,0.966 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1.032:0.012,0.944,0.044 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 1|1:2:0,0,1 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 1|1:2:0,0,1 1|1:2:0,0,1 0|0:0:1,0,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|1:2:0,0,1 +3 19992016 SNP-3.19990526. C A . 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